AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0137840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137840 MtrunA17_Chr1g0210241 98.347 242 4 0 11 252 35 276 4.29e-162 450
Msa0137840 MtrunA17_Chr2g0278661 40.000 110 63 1 11 117 35 144 1.64e-17 79.3
Msa0137840 MtrunA17_Chr4g0050781 36.364 99 63 0 11 109 35 133 5.89e-16 74.3
Msa0137840 MtrunA17_Chr4g0035031 49.020 51 26 0 11 61 36 86 8.30e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137840 AT1G60650.2 50.943 265 95 7 11 252 40 292 1.40e-64 203
Msa0137840 AT1G60650.1 50.943 265 95 7 11 252 40 292 1.40e-64 203
Msa0137840 AT1G60650.3 51.527 262 92 7 14 252 6 255 2.40e-64 201
Msa0137840 AT1G60650.4 51.341 261 92 7 15 252 1 249 2.89e-63 198
Msa0137840 AT5G04280.1 49.650 286 90 13 11 252 35 310 1.02e-54 178
Msa0137840 AT5G04280.3 50.000 282 87 13 15 252 1 272 2.29e-53 174
Msa0137840 AT5G04280.4 50.000 282 87 13 15 252 1 272 2.29e-53 174
Msa0137840 AT5G04280.5 50.000 282 87 13 15 252 1 272 2.29e-53 174
Msa0137840 AT5G04280.2 50.000 282 87 13 15 252 1 272 2.29e-53 174
Msa0137840 AT3G26420.1 36.820 239 108 10 11 240 35 239 1.84e-22 92.8
Msa0137840 AT4G39260.3 51.923 52 25 0 11 62 34 85 1.82e-13 65.1
Msa0137840 AT4G39260.1 52.000 50 24 0 11 60 34 83 7.91e-12 62.4

Find 221 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAGTAAATTTGGAAATTT+AGG 0.155200 1_3:-70479373 None:intergenic
TGCAATTGAACATGGCTTTA+TGG 0.194388 1_3:+70483936 Msa0137840:three_prime_UTR
TATAATTTGGAAGGAATATT+TGG 0.196318 1_3:+70480409 Msa0137840:five_prime_UTR
GAGATAATTGTTGTCAAATA+TGG 0.215817 1_3:+70481673 Msa0137840:five_prime_UTR
TGTGATACTTGTCATAAAAT+TGG 0.245413 1_3:+70481371 Msa0137840:five_prime_UTR
AATTTCAACTTGTTCCATTC+TGG 0.251499 1_3:-70481619 None:intergenic
ACAGGACGACCACGTGGATT+TGG 0.274620 1_3:+70482531 Msa0137840:CDS
GGTTGAGATATGTTGAATTC+AGG 0.274960 1_3:+70480305 Msa0137840:five_prime_UTR
CCATAGCAGATGGGTATTAA+TGG 0.275812 1_3:+70480627 Msa0137840:five_prime_UTR
ATTTGTTGGTGGATTGGGTT+GGG 0.282263 1_3:+70479533 Msa0137840:five_prime_UTR
AACATTAGGGACGTAGTTAT+TGG 0.285692 1_3:+70483762 Msa0137840:three_prime_UTR
CGTTATGACGGAGGACGTTA+TGG 0.301748 1_3:+70482906 Msa0137840:CDS
GTTTATTTGTGGCTGCAATT+TGG 0.307072 1_3:+70481463 Msa0137840:five_prime_UTR
AGGTGATGGTGGTCGTGGTC+GGG 0.309380 1_3:+70482809 Msa0137840:CDS
GAAATGGATGGACGGGAAAT+TGG 0.316691 1_3:+70482600 Msa0137840:CDS
GGCAATTGCTGCTTAGATAG+TGG 0.316895 1_3:+70480808 Msa0137840:five_prime_UTR
GATACTAAGATTATATTTGT+TGG 0.317430 1_3:+70481560 Msa0137840:five_prime_UTR
ACAAATAAACAGCATATATA+AGG 0.323134 1_3:-70481450 None:intergenic
GGAATATTTGGCAGTAAGAT+TGG 0.323150 1_3:+70480421 Msa0137840:five_prime_UTR
GTGATGAAGGAAGGAGTTAT+AGG 0.324717 1_3:+70483622 Msa0137840:CDS
TAGCTGTATGAAAACTATTC+TGG 0.330089 1_3:+70481718 Msa0137840:exon
AATGTGGGCGTCCAGGGCAC+TGG 0.342548 1_3:+70482763 Msa0137840:CDS
GACTACCCGCAAAATGGTTA+TGG 0.347078 1_3:+70483525 Msa0137840:CDS
TGCCTATGATCCCAATGCTT+TGG 0.348772 1_3:-70480789 None:intergenic
GAAGCTATGGGGCTGGAGAT+AGG 0.348816 1_3:+70482718 Msa0137840:CDS
TGATGAAGGAAGGAGTTATA+GGG 0.349786 1_3:+70483623 Msa0137840:CDS
TCGAATATTTGTTGGTGGAT+TGG 0.355149 1_3:+70479527 Msa0137840:five_prime_UTR
TTATATATGCTGTTTATTTG+TGG 0.356341 1_3:+70481452 Msa0137840:five_prime_UTR
CAGGACGACCACGTGGATTT+GGG 0.358578 1_3:+70482532 Msa0137840:CDS
TCAGAATAGTATTGATTAGT+TGG 0.362454 1_3:+70480936 Msa0137840:five_prime_UTR
GGTGATGGTGGTCGTGGTCG+GGG 0.363476 1_3:+70482810 Msa0137840:CDS
GAGGTGATGGTGGTCGTGGT+CGG 0.367565 1_3:+70482808 Msa0137840:CDS
CGAATATTTGTTGGTGGATT+GGG 0.369450 1_3:+70479528 Msa0137840:five_prime_UTR
ACGACAGTCAGAAATAGTTT+TGG 0.373755 1_3:+70478894 Msa0137840:five_prime_UTR
TCGAAATTGGAAGCAATGTC+TGG 0.373900 1_3:+70479492 Msa0137840:five_prime_UTR
GGTTGCAGAAAGTACATAAA+AGG 0.375750 1_3:-70480680 None:intergenic
AAAGACAACACGCAAGTTAC+AGG 0.376730 1_3:-70481287 None:intergenic
TCTAACGCAGGAGCAACATT+AGG 0.379230 1_3:+70483748 Msa0137840:three_prime_UTR
GTCCTTATGACCGCCCAAGC+AGG 0.381666 1_3:+70483655 Msa0137840:CDS
GGCTCAGACTACCCGCAAAA+TGG 0.386349 1_3:+70483519 Msa0137840:CDS
TATTGTTTAAATTTATATCA+TGG 0.386442 1_3:+70481587 Msa0137840:five_prime_UTR
AGTAAGATTGGGCTGAAAAC+TGG 0.387817 1_3:+70480433 Msa0137840:five_prime_UTR
CAATCTCGGGCCCAGTGCCC+TGG 0.390225 1_3:-70482774 None:intergenic
ACTTCAAAATTAGCTATAAT+AGG 0.390937 1_3:-70480876 None:intergenic
GCCCTGCTTGGGCGGTCATA+AGG 0.391874 1_3:-70483657 None:intergenic
GGTGGTCGTGGTCGGGGTGG+TGG 0.397614 1_3:+70482816 Msa0137840:CDS
GTTGAGATATGTTGAATTCA+GGG 0.399500 1_3:+70480306 Msa0137840:five_prime_UTR
ATTGTTGTCAAATATGGGCT+TGG 0.399579 1_3:+70481679 Msa0137840:five_prime_UTR
CCCTTGTTGAGGTTGAAGCT+TGG 0.409687 1_3:-70478932 None:intergenic
TCTGATAAAATAGTAGTTTG+TGG 0.409940 1_3:+70480251 Msa0137840:five_prime_UTR
AGATAATTGTTGTCAAATAT+GGG 0.412690 1_3:+70481674 Msa0137840:five_prime_UTR
GAAGAAAATCGAATATTTGT+TGG 0.413061 1_3:+70479519 Msa0137840:five_prime_UTR
CATGTTCAATTGCATTTGAA+AGG 0.414208 1_3:-70483927 None:intergenic
CAGGAAAGAATACTTCAATA+TGG 0.416398 1_3:-70480468 None:intergenic
TGCAAATTATAATCAATCTT+AGG 0.419300 1_3:-70481169 None:intergenic
GGAGGATGCAATCAAAGAAA+TGG 0.419502 1_3:+70482584 Msa0137840:CDS
TGGATTGGGTTGGGATGTTA+CGG 0.424965 1_3:+70479542 Msa0137840:five_prime_UTR
TTGTTGTCAAATATGGGCTT+GGG 0.427812 1_3:+70481680 Msa0137840:five_prime_UTR
GTTATGACGGAGGACGTTAT+GGG 0.429311 1_3:+70482907 Msa0137840:CDS
TCAATTCAACAAACAAATAC+AGG 0.430928 1_3:-70480487 None:intergenic
TGTTTCAAATGTGGGCGTCC+AGG 0.430957 1_3:+70482756 Msa0137840:CDS
ATCCAAAGCATTGGGATCAT+AGG 0.431807 1_3:+70480787 Msa0137840:five_prime_UTR
ACGGAGGACGTTATGGGGAT+AGG 0.436200 1_3:+70482913 Msa0137840:CDS
AAAATAGTAGTTTGTGGTAA+AGG 0.440863 1_3:+70480257 Msa0137840:five_prime_UTR
TTGCTAGTATTCTCCTCCCC+AGG 0.441904 1_3:-70481192 None:intergenic
ATCATGATGGAAAGGGATAC+AGG 0.443231 1_3:+70482513 Msa0137840:CDS
GGTGGACGAGCAGCCCTGCT+TGG 0.446845 1_3:-70483669 None:intergenic
CTTTCAAATGCAATTGAACA+TGG 0.446952 1_3:+70483928 Msa0137840:three_prime_UTR
CTCCACGCGCACCACCGTTT+CGG 0.447388 1_3:-70483566 None:intergenic
CGTGGAGGTGCTGATAGATA+TGG 0.447438 1_3:+70483582 Msa0137840:CDS
CCATTAATACCCATCTGCTA+TGG 0.448776 1_3:-70480627 None:intergenic
CGGGTGGTAGGGGAAGCTAT+GGG 0.448997 1_3:+70482706 Msa0137840:CDS
TTGGTCATACACACCTGCTA+TGG 0.449305 1_3:-70480702 None:intergenic
GTGGACGAGCAGCCCTGCTT+GGG 0.450077 1_3:-70483668 None:intergenic
GCCCGAGATTGTCCTTTGGC+AGG 0.452013 1_3:+70482786 Msa0137840:CDS
GTGTTCACCAAGTCAGTTAA+GGG 0.454214 1_3:+70481059 Msa0137840:five_prime_UTR
GAATATTTGGCAGTAAGATT+GGG 0.455635 1_3:+70480422 Msa0137840:five_prime_UTR
TCGGGTGGTAGGGGAAGCTA+TGG 0.455756 1_3:+70482705 Msa0137840:CDS
GGAGCTGCAACATAGTGGTT+TGG 0.456111 1_3:+70481392 Msa0137840:five_prime_UTR
CGGAGGACGTTATGGGGATA+GGG 0.457724 1_3:+70482914 Msa0137840:CDS
CTGGGCCCGAGATTGTCCTT+TGG 0.458404 1_3:+70482782 Msa0137840:CDS
CTGCCACCCCTTAACTGACT+TGG 0.458505 1_3:-70481066 None:intergenic
GGTGTTCACCAAGTCAGTTA+AGG 0.464814 1_3:+70481058 Msa0137840:five_prime_UTR
TCCTGCCAAAGGACAATCTC+GGG 0.464866 1_3:-70482787 None:intergenic
CGATCTGCAAGTGATCGATA+TGG 0.465592 1_3:+70483492 Msa0137840:CDS
GCTCAAGGTGGAGATTAGTA+TGG 0.466638 1_3:+70480284 Msa0137840:five_prime_UTR
AACAAGGCACAGCCCAGGAT+GGG 0.467319 1_3:+70482642 Msa0137840:CDS
GATGGTGGTCGTGGTCGGGG+TGG 0.472270 1_3:+70482813 Msa0137840:CDS
TCTTCACGTCCTAGGTTTGG+AGG 0.474346 1_3:+70482846 Msa0137840:CDS
ACTACCCGCAAAATGGTTAT+GGG 0.476598 1_3:+70483526 Msa0137840:CDS
AAGCTATGGGGCTGGAGATA+GGG 0.478531 1_3:+70482719 Msa0137840:CDS
TGTCCTTTGGCAGGAGGTGA+TGG 0.487069 1_3:+70482795 Msa0137840:CDS
GGGTGGTAGGGGAAGCTATG+GGG 0.488887 1_3:+70482707 Msa0137840:CDS
TACTAATGAACCTTGTCTCT+CGG 0.493189 1_3:-70480377 None:intergenic
ATGTGGGCGTCCAGGGCACT+GGG 0.494969 1_3:+70482764 Msa0137840:CDS
GAAAATCGAATATTTGTTGG+TGG 0.498286 1_3:+70479522 Msa0137840:five_prime_UTR
TACATAAAAGGCGGAAGCAA+AGG 0.498753 1_3:-70480668 None:intergenic
GGCTGGAGATAGGGTAGGAC+AGG 0.498804 1_3:+70482728 Msa0137840:CDS
ACAAGGCACAGCCCAGGATG+GGG 0.498851 1_3:+70482643 Msa0137840:CDS
CTAACGCAGGAGCAACATTA+GGG 0.500880 1_3:+70483749 Msa0137840:three_prime_UTR
TATTTGTTGGTGGATTGGGT+TGG 0.502918 1_3:+70479532 Msa0137840:five_prime_UTR
CTTCACGTCCTAGGTTTGGA+GGG 0.505875 1_3:+70482847 Msa0137840:CDS
TCCTTATGACCGCCCAAGCA+GGG 0.508519 1_3:+70483656 Msa0137840:CDS
GACGTAGTTATTGGTTATGT+AGG 0.509664 1_3:+70483771 Msa0137840:three_prime_UTR
GATTGATTATAATTTGCACC+TGG 0.513544 1_3:+70481174 Msa0137840:five_prime_UTR
CGGCAAAATTCTCGAATGCC+AGG 0.513653 1_3:+70479596 Msa0137840:five_prime_UTR
TACTTTCTGCAACCCATAGC+AGG 0.515890 1_3:+70480689 Msa0137840:five_prime_UTR
GTTTCAAATGTGGGCGTCCA+GGG 0.516565 1_3:+70482757 Msa0137840:CDS
GACCGAAACGGTGGTGCGCG+TGG 0.518819 1_3:+70483564 Msa0137840:CDS
CAAGGCACAGCCCAGGATGG+GGG 0.520072 1_3:+70482644 Msa0137840:CDS
GGAATGCCAGCTCGTGATGA+AGG 0.520759 1_3:+70483609 Msa0137840:CDS
TAGGACCTGTCAGTGGTGTA+TGG 0.520994 1_3:-70480728 None:intergenic
GACGAGCAGCCCTGCTTGGG+CGG 0.521128 1_3:-70483665 None:intergenic
GCAATTGCTGCTTAGATAGT+GGG 0.521545 1_3:+70480809 Msa0137840:five_prime_UTR
TCCTGTAGATCATGATGGAA+AGG 0.523083 1_3:+70482505 Msa0137840:intron
CAACAAGGCACAGCCCAGGA+TGG 0.523273 1_3:+70482641 Msa0137840:CDS
CCTGTAGATCATGATGGAAA+GGG 0.526313 1_3:+70482506 Msa0137840:intron
CGAGGTATACCCATAGCAGA+TGG 0.528111 1_3:+70480617 Msa0137840:five_prime_UTR
TTCACGTCCTAGGTTTGGAG+GGG 0.528644 1_3:+70482848 Msa0137840:CDS
AATCAGTAGCGGTCAAATGA+TGG 0.528787 1_3:-70483690 None:intergenic
ACAAACGAGGGGAAGTAACT+AGG 0.530088 1_3:-70483884 None:intergenic
AACAGATTTACTACTAGAAG+AGG 0.530193 1_3:-70480545 None:intergenic
GCAGGAGGTGATGGTGGTCG+TGG 0.530483 1_3:+70482804 Msa0137840:CDS
AATCAAAGAAATGGATGGAC+GGG 0.530859 1_3:+70482593 Msa0137840:CDS
GGTAGGGGAAGCTATGGGGC+TGG 0.536168 1_3:+70482711 Msa0137840:CDS
CATGGAGTCATGAACCAGAA+TGG 0.540521 1_3:+70481605 Msa0137840:five_prime_UTR
GGCCACTATACTTGTAGTCT+CGG 0.540771 1_3:-70482950 None:intergenic
ATTGATTATAATTTGCACCT+GGG 0.540968 1_3:+70481175 Msa0137840:five_prime_UTR
AAATAATTCTCGAGCAGACA+TGG 0.541733 1_3:-70481019 None:intergenic
CTCCTTCCTTCATCACGAGC+TGG 0.543013 1_3:-70483615 None:intergenic
GCAGAAGTGAAATCAATACT+TGG 0.543335 1_3:+70481420 Msa0137840:five_prime_UTR
TGGTCATACACACCTGCTAT+GGG 0.545382 1_3:-70480701 None:intergenic
CATTAATACCCATCTGCTAT+GGG 0.545937 1_3:-70480626 None:intergenic
AACCGAGACTACAAGTATAG+TGG 0.547514 1_3:+70482948 Msa0137840:CDS
CAGGGATATGAAAGTAGCCA+AGG 0.550934 1_3:+70480324 Msa0137840:five_prime_UTR
GGGAGGAGAATACTAGCAAA+AGG 0.551136 1_3:+70481196 Msa0137840:five_prime_UTR
GCGGAAGCAAAGGCAGCATA+CGG 0.554194 1_3:-70480658 None:intergenic
CTTGGGCGGTCATAAGGACC+AGG 0.554744 1_3:-70483651 None:intergenic
GTTCTTCCTGTAGATCATGA+TGG 0.555995 1_3:+70482500 Msa0137840:intron
TTGTGTAGGTATACAACTAG+TGG 0.557536 1_3:+70483465 Msa0137840:intron
CTCCTGCCAAAGGACAATCT+CGG 0.558163 1_3:-70482788 None:intergenic
TCCAAGCTTCAACCTCAACA+AGG 0.559953 1_3:+70478931 Msa0137840:five_prime_UTR
AAGGCACAGCCCAGGATGGG+GGG 0.560024 1_3:+70482645 Msa0137840:CDS
CGAGATTGTCCTTTGGCAGG+AGG 0.560589 1_3:+70482789 Msa0137840:CDS
CAGGATGACTGTTTCAAATG+TGG 0.561074 1_3:+70482747 Msa0137840:CDS
AGGTTTGGAGGGGATCGCCT+TGG 0.561107 1_3:+70482858 Msa0137840:CDS
AATGGTTATGGGAAGGAAAG+AGG 0.565681 1_3:+70483537 Msa0137840:CDS
ATTATAATTTGCACCTGGGG+AGG 0.566749 1_3:+70481179 Msa0137840:five_prime_UTR
GTGATCGCTATGCTAGTGAC+AGG 0.568218 1_3:+70482973 Msa0137840:CDS
AGATCAGACTGATATTCCCT+TGG 0.569056 1_3:-70480341 None:intergenic
AGAATACTAGCAAAAGGTGC+TGG 0.576202 1_3:+70481202 Msa0137840:five_prime_UTR
TGCCAGCTCGTGATGAAGGA+AGG 0.577153 1_3:+70483613 Msa0137840:CDS
CAATCAAAGAAATGGATGGA+CGG 0.577207 1_3:+70482592 Msa0137840:CDS
CAGTCAACAAGGCACAGCCC+AGG 0.578143 1_3:+70482637 Msa0137840:CDS
AACCACCATACACCACTGAC+AGG 0.578147 1_3:+70480723 Msa0137840:five_prime_UTR
TTCAGACCGTCGGGGAATGG+AGG 0.579926 1_3:+70482566 Msa0137840:CDS
GATGAAGGAAGGAGTTATAG+GGG 0.585367 1_3:+70483624 Msa0137840:CDS
TGTCAGTGGTGTATGGTGGT+TGG 0.586006 1_3:-70480721 None:intergenic
AGGCGATCCCCTCCAAACCT+AGG 0.586100 1_3:-70482855 None:intergenic
AGGATGACTGTTTCAAATGT+GGG 0.586550 1_3:+70482748 Msa0137840:CDS
TTGATTATAATTTGCACCTG+GGG 0.586761 1_3:+70481176 Msa0137840:five_prime_UTR
GCAGAATTACATGAAATGCT+AGG 0.587261 1_3:+70481085 Msa0137840:five_prime_UTR
CCAGCGAGAGATTCTAACGC+AGG 0.588400 1_3:+70483736 Msa0137840:three_prime_UTR
TGTGGTAAAGGTAGAGCTCA+AGG 0.590002 1_3:+70480269 Msa0137840:five_prime_UTR
AAATTGGAGCTGCAACATAG+TGG 0.592429 1_3:+70481387 Msa0137840:five_prime_UTR
AGCAGCACTAGAGTACTCAT+AGG 0.592699 1_3:-70480747 None:intergenic
GAGGAACGATGTCAATGCAA+TGG 0.595040 1_3:+70481256 Msa0137840:five_prime_UTR
TGTCACTAGCATAGCGATCA+CGG 0.597431 1_3:-70482971 None:intergenic
TGCATTGACATCGTTCCTCG+TGG 0.598177 1_3:-70481252 None:intergenic
CCAAGCTTCAACCTCAACAA+GGG 0.599651 1_3:+70478932 Msa0137840:five_prime_UTR
TGATTGCTACTGTTGCATGT+TGG 0.603742 1_3:+70483708 Msa0137840:exon
TTTGATCTTTGAGATGCGGT+GGG 0.603751 1_3:+70480169 Msa0137840:intron
CCCGCAAAATGGTTATGGGA+AGG 0.605592 1_3:+70483530 Msa0137840:CDS
TCACAGTTTCAGACAACCGC+AGG 0.606444 1_3:+70483797 Msa0137840:three_prime_UTR
TGCTATTGTTCCGAGAGACA+AGG 0.607451 1_3:+70480367 Msa0137840:five_prime_UTR
AGTAACTGTATCTCATCAGT+TGG 0.607918 1_3:+70480849 Msa0137840:five_prime_UTR
GCAAGTGATCGATATGGCAG+TGG 0.607962 1_3:+70483498 Msa0137840:CDS
GATGCAATCAAAGAAATGGA+TGG 0.610297 1_3:+70482588 Msa0137840:CDS
TACATTGATGATCGTTATGA+CGG 0.612196 1_3:+70482894 Msa0137840:CDS
TTTGAAGGAAACCCTTGTTG+AGG 0.614606 1_3:-70478943 None:intergenic
CTACTAGAAGAGGAAGGAGG+CGG 0.614779 1_3:-70480535 None:intergenic
TTGCATCCTCCATTCCCCGA+CGG 0.618468 1_3:-70482572 None:intergenic
GAAAGAGGCTATGACCGAAA+CGG 0.621535 1_3:+70483552 Msa0137840:CDS
AGGAGTTATAGGGGTAGACC+TGG 0.622881 1_3:+70483633 Msa0137840:CDS
TTATGACGGAGGACGTTATG+GGG 0.626407 1_3:+70482908 Msa0137840:CDS
GCAGACCAACGTTACAGAGG+TGG 0.626631 1_3:+70482675 Msa0137840:CDS
CCACCATCACCTCCTGCCAA+AGG 0.626760 1_3:-70482798 None:intergenic
CCTGCGTTAGAATCTCTCGC+TGG 0.628414 1_3:-70483736 None:intergenic
GAGGTATACCCATAGCAGAT+GGG 0.634405 1_3:+70480618 Msa0137840:five_prime_UTR
CAGTAGCGGTCAAATGATGG+TGG 0.636691 1_3:-70483687 None:intergenic
GGTGCTGATAGATATGGAAG+CGG 0.637986 1_3:+70483588 Msa0137840:CDS
CAACACGCAAGTTACAGGCA+TGG 0.641717 1_3:-70481282 None:intergenic
TATGGGGCTGGAGATAGGGT+AGG 0.643765 1_3:+70482723 Msa0137840:CDS
CCTTTGGCAGGAGGTGATGG+TGG 0.645070 1_3:+70482798 Msa0137840:CDS
CGAAACGGTGGTGCGCGTGG+AGG 0.646149 1_3:+70483567 Msa0137840:CDS
TCGCATCATCTCAGTCAACA+AGG 0.646358 1_3:+70482626 Msa0137840:CDS
GACTAGCGTCAAACAAACGA+GGG 0.649922 1_3:-70483896 None:intergenic
AGGGATATGAAAGTAGCCAA+GGG 0.650486 1_3:+70480325 Msa0137840:five_prime_UTR
GACCTGTCAGTGGTGTATGG+TGG 0.656072 1_3:-70480725 None:intergenic
TGTATCGCTCACGTTCACCA+AGG 0.663256 1_3:-70482875 None:intergenic
GATTTACTACTAGAAGAGGA+AGG 0.664061 1_3:-70480541 None:intergenic
TGCAGAAAGTACATAAAAGG+CGG 0.666341 1_3:-70480677 None:intergenic
CAGTTACTCAGAATGAAGAG+AGG 0.667208 1_3:-70480834 None:intergenic
TCACCAAGTCAGTTAAGGGG+TGG 0.671167 1_3:+70481063 Msa0137840:five_prime_UTR
TGTTCACCAAGTCAGTTAAG+GGG 0.675802 1_3:+70481060 Msa0137840:five_prime_UTR
TCTATAAAACTAGAATCCTG+CGG 0.677566 1_3:-70483813 None:intergenic
AGAGGCTATGACCGAAACGG+TGG 0.684036 1_3:+70483555 Msa0137840:CDS
AGGAGGCGGATGAACAGACA+CGG 0.685938 1_3:-70480521 None:intergenic
GATGCAGACCAACGTTACAG+AGG 0.693509 1_3:+70482672 Msa0137840:CDS
TGACTAGCGTCAAACAAACG+AGG 0.699147 1_3:-70483897 None:intergenic
TCTACTGATTGAGAAAATAG+CGG 0.702550 1_3:+70481498 Msa0137840:five_prime_UTR
GTACTCATAGGACCTGTCAG+TGG 0.704206 1_3:-70480735 None:intergenic
AGGGATACAGGACGACCACG+TGG 0.710858 1_3:+70482525 Msa0137840:CDS
TTACTACTAGAAGAGGAAGG+AGG 0.714669 1_3:-70480538 None:intergenic
GATTGTAGTGAATTATAACG+AGG 0.714962 1_3:+70480599 Msa0137840:five_prime_UTR
ACTAGCGTCAAACAAACGAG+GGG 0.728863 1_3:-70483895 None:intergenic
ATTGATGATCGTTATGACGG+AGG 0.731591 1_3:+70482897 Msa0137840:CDS
GCAACAGTAGCAATCAGTAG+CGG 0.734865 1_3:-70483701 None:intergenic
GTAATAAACCCAAATCCACG+TGG 0.753361 1_3:-70482540 None:intergenic
GGTAAAGGTAGAGCTCAAGG+TGG 0.767137 1_3:+70480272 Msa0137840:five_prime_UTR
GCGAAAGCATGATCTCCACG+AGG 0.793215 1_3:+70481237 Msa0137840:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTATATAATTTGGA+AGG + chr1_3:70480400-70480419 Msa0137840:five_prime_UTR 10.0%
!! TATTGTTTAAATTTATATCA+TGG + chr1_3:70481587-70481606 Msa0137840:five_prime_UTR 10.0%
!!! TTATAATTATTTTATAGCTA+TGG - chr1_3:70483046-70483065 None:intergenic 10.0%
!! TTATGTCTAATTATATTTAT+TGG + chr1_3:70483110-70483129 Msa0137840:intron 10.0%
!!! AAGAAAAATAACATTTTAAA+TGG - chr1_3:70483253-70483272 None:intergenic 10.0%
!!! TTTCTGTATATTTAGAATTA+GGG - chr1_3:70478970-70478989 None:intergenic 15.0%
!! TACAACAACTAAAAAAAAAA+TGG - chr1_3:70479683-70479702 None:intergenic 15.0%
!!! TTCAAAATTATTGTAGTTTT+TGG + chr1_3:70479870-70479889 Msa0137840:intron 15.0%
!! ATTGAAGAATTTATTATGTT+TGG + chr1_3:70480095-70480114 Msa0137840:intron 15.0%
!!! ATTTTTTTTCTTTGTTTTTC+TGG + chr1_3:70480129-70480148 Msa0137840:intron 15.0%
!! AGTAATTCAAAAAAATCATT+CGG - chr1_3:70480902-70480921 None:intergenic 15.0%
!! AGAAAATTATATGTATACTT+AGG + chr1_3:70482041-70482060 Msa0137840:intron 15.0%
!! TAAATTGTATCTATAATTGA+TGG + chr1_3:70482085-70482104 Msa0137840:intron 15.0%
!! AAATTGTATCTATAATTGAT+GGG + chr1_3:70482086-70482105 Msa0137840:intron 15.0%
!!! TATCTAAAACTTATTTAAAC+TGG + chr1_3:70483176-70483195 Msa0137840:intron 15.0%
!!! ATCTAAAACTTATTTAAACT+GGG + chr1_3:70483177-70483196 Msa0137840:intron 15.0%
!!! ATTTTGTTTAATTGATAATG+TGG + chr1_3:70483273-70483292 Msa0137840:intron 15.0%
!!! TTTTGTTTAATTGATAATGT+GGG + chr1_3:70483274-70483293 Msa0137840:intron 15.0%
!! TGAATAAATACTACTAAAAA+GGG - chr1_3:70483353-70483372 None:intergenic 15.0%
!! ATGAATAAATACTACTAAAA+AGG - chr1_3:70483354-70483373 None:intergenic 15.0%
!!! CTTTCTGTATATTTAGAATT+AGG - chr1_3:70478971-70478990 None:intergenic 20.0%
!! TTTGTCTATTCTCAATATAA+GGG + chr1_3:70479201-70479220 Msa0137840:intron 20.0%
!! AAGAGTAAATTTGGAAATTT+AGG - chr1_3:70479376-70479395 None:intergenic 20.0%
!! CTTACAAAAAAGAGTAAATT+TGG - chr1_3:70479385-70479404 None:intergenic 20.0%
!!! AGAATTTTATTTTCCTGAAT+GGG + chr1_3:70479721-70479740 Msa0137840:intron 20.0%
!! TTACATGAAAACTTCAAAAA+TGG - chr1_3:70479805-70479824 None:intergenic 20.0%
!! ATAATAAAACAAAACAAAGC+TGG - chr1_3:70479829-70479848 None:intergenic 20.0%
!! TATAATTTGGAAGGAATATT+TGG + chr1_3:70480409-70480428 Msa0137840:five_prime_UTR 20.0%
!! ACTTCAAAATTAGCTATAAT+AGG - chr1_3:70480879-70480898 None:intergenic 20.0%
!! TGCAAATTATAATCAATCTT+AGG - chr1_3:70481172-70481191 None:intergenic 20.0%
!! TCGAAAAAAAAAATATACTC+TGG + chr1_3:70481317-70481336 Msa0137840:five_prime_UTR 20.0%
!! ACAAATAAACAGCATATATA+AGG - chr1_3:70481453-70481472 None:intergenic 20.0%
!!! TTATATATGCTGTTTATTTG+TGG + chr1_3:70481452-70481471 Msa0137840:five_prime_UTR 20.0%
!! GATACTAAGATTATATTTGT+TGG + chr1_3:70481560-70481579 Msa0137840:five_prime_UTR 20.0%
!! AGATAATTGTTGTCAAATAT+GGG + chr1_3:70481674-70481693 Msa0137840:five_prime_UTR 20.0%
!! TGTTTATAAATTTAATGTCC+CGG + chr1_3:70481884-70481903 Msa0137840:intron 20.0%
!! AAACAAGCATAAAAAAATAC+CGG - chr1_3:70481906-70481925 None:intergenic 20.0%
!! AAACTACTCAAAATTTCTAT+AGG - chr1_3:70481950-70481969 None:intergenic 20.0%
!! AATTGTATCTATAATTGATG+GGG + chr1_3:70482087-70482106 Msa0137840:intron 20.0%
!! TTATTCATATTTCCATTATC+TGG + chr1_3:70482463-70482482 Msa0137840:intron 20.0%
!! GATTGAATAAAGATTTGATT+AGG + chr1_3:70483313-70483332 Msa0137840:intron 20.0%
!!! GATTCTAGTTTTATAGATTA+TGG + chr1_3:70483819-70483838 Msa0137840:three_prime_UTR 20.0%
!!! ATTTAGAATTAGGGTTTTGA+AGG - chr1_3:70478961-70478980 None:intergenic 25.0%
! GTCAAAGATATATTTGTGTT+TGG + chr1_3:70479019-70479038 Msa0137840:intron 25.0%
! ATGAAAATGCATGTGTAAAA+TGG - chr1_3:70479107-70479126 None:intergenic 25.0%
! AATAGACAAAGTTATGGAAT+TGG - chr1_3:70479191-70479210 None:intergenic 25.0%
! ATTGAGAATAGACAAAGTTA+TGG - chr1_3:70479197-70479216 None:intergenic 25.0%
! CTTTGTCTATTCTCAATATA+AGG + chr1_3:70479200-70479219 Msa0137840:intron 25.0%
! GAAGAAAATCGAATATTTGT+TGG + chr1_3:70479519-70479538 Msa0137840:five_prime_UTR 25.0%
! AACAAATTGGGGAAAATAAA+GGG - chr1_3:70479640-70479659 None:intergenic 25.0%
! AAACAAATTGGGGAAAATAA+AGG - chr1_3:70479641-70479660 None:intergenic 25.0%
!!! GAGAATTTTATTTTCCTGAA+TGG + chr1_3:70479720-70479739 Msa0137840:intron 25.0%
!! AAATTCAGCTTTTATCACAA+TGG + chr1_3:70479921-70479940 Msa0137840:intron 25.0%
!! ACCTTTTCTTAAAACTGTTA+AGG + chr1_3:70479991-70480010 Msa0137840:intron 25.0%
!!! ACCTTAACAGTTTTAAGAAA+AGG - chr1_3:70479995-70480014 None:intergenic 25.0%
! TCTGATAAAATAGTAGTTTG+TGG + chr1_3:70480251-70480270 Msa0137840:five_prime_UTR 25.0%
!! AAAATAGTAGTTTGTGGTAA+AGG + chr1_3:70480257-70480276 Msa0137840:five_prime_UTR 25.0%
! TCAATTCAACAAACAAATAC+AGG - chr1_3:70480490-70480509 None:intergenic 25.0%
! TACTATTCTGATGTAAAAAG+TGG - chr1_3:70480927-70480946 None:intergenic 25.0%
!!! TCAGAATAGTATTGATTAGT+TGG + chr1_3:70480936-70480955 Msa0137840:five_prime_UTR 25.0%
!!! AGTTTTGCATTAGTTTTGAA+TGG + chr1_3:70480961-70480980 Msa0137840:five_prime_UTR 25.0%
!! ATTGATTATAATTTGCACCT+GGG + chr1_3:70481175-70481194 Msa0137840:five_prime_UTR 25.0%
! TGTGATACTTGTCATAAAAT+TGG + chr1_3:70481371-70481390 Msa0137840:five_prime_UTR 25.0%
! GAGATAATTGTTGTCAAATA+TGG + chr1_3:70481673-70481692 Msa0137840:five_prime_UTR 25.0%
! AACAAGCATAAAAAAATACC+GGG - chr1_3:70481905-70481924 None:intergenic 25.0%
! TTATATGTATACTTAGGAAC+TGG + chr1_3:70482047-70482066 Msa0137840:intron 25.0%
!! AGATACAATTTAAGTTACCA+AGG - chr1_3:70482077-70482096 None:intergenic 25.0%
! TTGAAATTTATGCCAGATAA+TGG - chr1_3:70482478-70482497 None:intergenic 25.0%
!!! TGGTTTATAACTTGTTTTCA+TGG + chr1_3:70483130-70483149 Msa0137840:intron 25.0%
TAAATATACAGAAAGCAGCA+AGG + chr1_3:70478976-70478995 Msa0137840:intron 30.0%
GCAAGGAAAGAAATTGATAA+TGG + chr1_3:70478993-70479012 Msa0137840:intron 30.0%
GATGCTTCTTCTGTTATTAT+AGG - chr1_3:70479049-70479068 None:intergenic 30.0%
!! TATACAGGTTGATTGAACAA+TGG - chr1_3:70479165-70479184 None:intergenic 30.0%
TTATGGAATTGGAGATATAC+AGG - chr1_3:70479180-70479199 None:intergenic 30.0%
GTGTATGGAAAGATTGTTTA+AGG - chr1_3:70479315-70479334 None:intergenic 30.0%
TTGGAAATTTAGGCTATGTT+TGG - chr1_3:70479366-70479385 None:intergenic 30.0%
! GAAAATCGAATATTTGTTGG+TGG + chr1_3:70479522-70479541 Msa0137840:five_prime_UTR 30.0%
CTGAGAATTGAAACAAATTG+GGG - chr1_3:70479651-70479670 None:intergenic 30.0%
GCTGAGAATTGAAACAAATT+GGG - chr1_3:70479652-70479671 None:intergenic 30.0%
TGCTGAGAATTGAAACAAAT+TGG - chr1_3:70479653-70479672 None:intergenic 30.0%
TTGTAGTAATTGTTGTCACA+GGG + chr1_3:70479698-70479717 Msa0137840:intron 30.0%
!!! TTTTATTTTCCTGAATGGGT+TGG + chr1_3:70479725-70479744 Msa0137840:intron 30.0%
TCTATCAGCTGTTTATGTTA+GGG + chr1_3:70480014-70480033 Msa0137840:intron 30.0%
GTTGAGATATGTTGAATTCA+GGG + chr1_3:70480306-70480325 Msa0137840:five_prime_UTR 30.0%
GAATATTTGGCAGTAAGATT+GGG + chr1_3:70480422-70480441 Msa0137840:five_prime_UTR 30.0%
CAGGAAAGAATACTTCAATA+TGG - chr1_3:70480471-70480490 None:intergenic 30.0%
AACAGATTTACTACTAGAAG+AGG - chr1_3:70480548-70480567 None:intergenic 30.0%
GATTGTAGTGAATTATAACG+AGG + chr1_3:70480599-70480618 Msa0137840:five_prime_UTR 30.0%
! AGTTTTCAAATCCAAAGCAT+TGG + chr1_3:70480778-70480797 Msa0137840:five_prime_UTR 30.0%
!! GTTTTCAAATCCAAAGCATT+GGG + chr1_3:70480779-70480798 Msa0137840:five_prime_UTR 30.0%
! TATTTTCTGCTAAAATGTCG+AGG + chr1_3:70481037-70481056 Msa0137840:five_prime_UTR 30.0%
! GATTGATTATAATTTGCACC+TGG + chr1_3:70481174-70481193 Msa0137840:five_prime_UTR 30.0%
! TTGATTATAATTTGCACCTG+GGG + chr1_3:70481176-70481195 Msa0137840:five_prime_UTR 30.0%
! TTTTATGACAAGTATCACAG+AGG - chr1_3:70481370-70481389 None:intergenic 30.0%
! TCTACTGATTGAGAAAATAG+CGG + chr1_3:70481498-70481517 Msa0137840:five_prime_UTR 30.0%
! AATTTCAACTTGTTCCATTC+TGG - chr1_3:70481622-70481641 None:intergenic 30.0%
! TGAAATTTTTGCTCAGATTG+TGG + chr1_3:70481635-70481654 Msa0137840:five_prime_UTR 30.0%
TAGCTGTATGAAAACTATTC+TGG + chr1_3:70481718-70481737 Msa0137840:exon 30.0%
AGAAACTTGTGCATTGAATA+AGG - chr1_3:70481842-70481861 None:intergenic 30.0%
ATTCAATGCACAAGTTTCTA+TGG + chr1_3:70481843-70481862 Msa0137840:intron 30.0%
TTTATGTAAGCGTCATTCTT+TGG + chr1_3:70481923-70481942 Msa0137840:intron 30.0%
!!! AAATTGCATTGCTGTTTTAG+TGG + chr1_3:70481973-70481992 Msa0137840:intron 30.0%
TATCTATAATTGATGGGGAT+GGG + chr1_3:70482092-70482111 Msa0137840:intron 30.0%
ACAAGATATAAGTAGAAGGT+AGG - chr1_3:70482231-70482250 None:intergenic 30.0%
CAAGACAAGATATAAGTAGA+AGG - chr1_3:70482235-70482254 None:intergenic 30.0%
TACAAGCAAGATGGATAAAA+TGG - chr1_3:70482320-70482339 None:intergenic 30.0%
ATAAGATCATACAAGCAAGA+TGG - chr1_3:70482329-70482348 None:intergenic 30.0%
TCATACATACAAACAAGATG+AGG - chr1_3:70482378-70482397 None:intergenic 30.0%
! TCTTGTTTGTATGTATGATG+TGG + chr1_3:70482380-70482399 Msa0137840:intron 30.0%
!! ATGATGTGGTTCTATTTTAC+TGG + chr1_3:70482394-70482413 Msa0137840:intron 30.0%
! TTATTACATTTTCAGACCGT+CGG + chr1_3:70482556-70482575 Msa0137840:CDS 30.0%
! TACATTGATGATCGTTATGA+CGG + chr1_3:70482894-70482913 Msa0137840:CDS 30.0%
GGATAGTAACAAATGATTGA+AGG + chr1_3:70483151-70483170 Msa0137840:intron 30.0%
!! TTAATTGATAATGTGGGCAA+CGG + chr1_3:70483280-70483299 Msa0137840:intron 30.0%
ATAAAGATTTGATTAGGCAC+TGG + chr1_3:70483319-70483338 Msa0137840:intron 30.0%
TAACAAATACATAGACCAGA+AGG - chr1_3:70483425-70483444 None:intergenic 30.0%
! TGTTTTGCTGAAAATTGTGT+AGG + chr1_3:70483451-70483470 Msa0137840:intron 30.0%
TCTATAAAACTAGAATCCTG+CGG - chr1_3:70483816-70483835 None:intergenic 30.0%
CATGTTCAATTGCATTTGAA+AGG - chr1_3:70483930-70483949 None:intergenic 30.0%
CTTTCAAATGCAATTGAACA+TGG + chr1_3:70483928-70483947 Msa0137840:three_prime_UTR 30.0%
! ACGACAGTCAGAAATAGTTT+TGG + chr1_3:70478894-70478913 Msa0137840:five_prime_UTR 35.0%
TTTAAGGAAGTGAGTGGAAA+GGG - chr1_3:70479299-70479318 None:intergenic 35.0%
AGATTGTTTAAGGAAGTGAG+TGG - chr1_3:70479305-70479324 None:intergenic 35.0%
! GTCAAAGGAAAGAAAGTGTA+TGG - chr1_3:70479330-70479349 None:intergenic 35.0%
! TTGATTCGTAACGAAAACTG+TGG + chr1_3:70479458-70479477 Msa0137840:intron 35.0%
! GGTTTCAGGATTTTCGAAAT+TGG + chr1_3:70479479-70479498 Msa0137840:intron 35.0%
! TCGAATATTTGTTGGTGGAT+TGG + chr1_3:70479527-70479546 Msa0137840:five_prime_UTR 35.0%
!! CGAATATTTGTTGGTGGATT+GGG + chr1_3:70479528-70479547 Msa0137840:five_prime_UTR 35.0%
! GAACATGCTTTTGATCGTTA+CGG + chr1_3:70479576-70479595 Msa0137840:five_prime_UTR 35.0%
AATTGGGGAAAATAAAGGGT+TGG - chr1_3:70479636-70479655 None:intergenic 35.0%
GTTGTAGTAATTGTTGTCAC+AGG + chr1_3:70479697-70479716 Msa0137840:intron 35.0%
! TTCAGCTTTTATCACAATGG+TGG + chr1_3:70479924-70479943 Msa0137840:intron 35.0%
GTCTATCAGCTGTTTATGTT+AGG + chr1_3:70480013-70480032 Msa0137840:intron 35.0%
! GTTAGGATGCACTCTATTTT+TGG + chr1_3:70480052-70480071 Msa0137840:intron 35.0%
!!! ACCTTTTGATCTTTGAGATG+CGG + chr1_3:70480165-70480184 Msa0137840:intron 35.0%
GGTTGAGATATGTTGAATTC+AGG + chr1_3:70480305-70480324 Msa0137840:five_prime_UTR 35.0%
TACTAATGAACCTTGTCTCT+CGG - chr1_3:70480380-70480399 None:intergenic 35.0%
GGAATATTTGGCAGTAAGAT+TGG + chr1_3:70480421-70480440 Msa0137840:five_prime_UTR 35.0%
GATTTACTACTAGAAGAGGA+AGG - chr1_3:70480544-70480563 None:intergenic 35.0%
CATTAATACCCATCTGCTAT+GGG - chr1_3:70480629-70480648 None:intergenic 35.0%
! TGCAGAAAGTACATAAAAGG+CGG - chr1_3:70480680-70480699 None:intergenic 35.0%
! GGTTGCAGAAAGTACATAAA+AGG - chr1_3:70480683-70480702 None:intergenic 35.0%
AGTAACTGTATCTCATCAGT+TGG + chr1_3:70480849-70480868 Msa0137840:five_prime_UTR 35.0%
AAATAATTCTCGAGCAGACA+TGG - chr1_3:70481022-70481041 None:intergenic 35.0%
GCAGAATTACATGAAATGCT+AGG + chr1_3:70481085-70481104 Msa0137840:five_prime_UTR 35.0%
GCAGAAGTGAAATCAATACT+TGG + chr1_3:70481420-70481439 Msa0137840:five_prime_UTR 35.0%
GTTTATTTGTGGCTGCAATT+TGG + chr1_3:70481463-70481482 Msa0137840:five_prime_UTR 35.0%
ATTGTTGTCAAATATGGGCT+TGG + chr1_3:70481679-70481698 Msa0137840:five_prime_UTR 35.0%
TTGTTGTCAAATATGGGCTT+GGG + chr1_3:70481680-70481699 Msa0137840:five_prime_UTR 35.0%
! AATGCTGTTTGCATGTTTCA+CGG + chr1_3:70481798-70481817 Msa0137840:intron 35.0%
GTATCTATAATTGATGGGGA+TGG + chr1_3:70482091-70482110 Msa0137840:intron 35.0%
ATCTATAATTGATGGGGATG+GGG + chr1_3:70482093-70482112 Msa0137840:intron 35.0%
CTTGCTTGTATGATCTTATC+TGG + chr1_3:70482330-70482349 Msa0137840:intron 35.0%
CAAACAAGATGAGGATACAA+TGG - chr1_3:70482369-70482388 None:intergenic 35.0%
! TATTACATTTTCAGACCGTC+GGG + chr1_3:70482557-70482576 Msa0137840:CDS 35.0%
GATGCAATCAAAGAAATGGA+TGG + chr1_3:70482588-70482607 Msa0137840:CDS 35.0%
CAATCAAAGAAATGGATGGA+CGG + chr1_3:70482592-70482611 Msa0137840:CDS 35.0%
AATCAAAGAAATGGATGGAC+GGG + chr1_3:70482593-70482612 Msa0137840:CDS 35.0%
! TTACAGAGGTGGTTTTTCTT+CGG + chr1_3:70482686-70482705 Msa0137840:CDS 35.0%
AGGATGACTGTTTCAAATGT+GGG + chr1_3:70482748-70482767 Msa0137840:CDS 35.0%
TTTCCATTTGTCATTCCTTC+TGG + chr1_3:70483407-70483426 Msa0137840:intron 35.0%
TTGTGTAGGTATACAACTAG+TGG + chr1_3:70483465-70483484 Msa0137840:intron 35.0%
TGATGAAGGAAGGAGTTATA+GGG + chr1_3:70483623-70483642 Msa0137840:CDS 35.0%
AACATTAGGGACGTAGTTAT+TGG + chr1_3:70483762-70483781 Msa0137840:three_prime_UTR 35.0%
! GACGTAGTTATTGGTTATGT+AGG + chr1_3:70483771-70483790 Msa0137840:three_prime_UTR 35.0%
! TGCAATTGAACATGGCTTTA+TGG + chr1_3:70483936-70483955 Msa0137840:three_prime_UTR 35.0%
TTTGAAGGAAACCCTTGTTG+AGG - chr1_3:70478946-70478965 None:intergenic 40.0%
AAACTTCTGACGTCATCGTA+AGG + chr1_3:70479131-70479150 Msa0137840:intron 40.0%
GTTTAAGGAAGTGAGTGGAA+AGG - chr1_3:70479300-70479319 None:intergenic 40.0%
GGATGAGCAATGAAAGTCAA+AGG - chr1_3:70479345-70479364 None:intergenic 40.0%
GTAACGAAAACTGTGGTTTC+AGG + chr1_3:70479465-70479484 Msa0137840:intron 40.0%
TCGAAATTGGAAGCAATGTC+TGG + chr1_3:70479492-70479511 Msa0137840:five_prime_UTR 40.0%
!! TATTTGTTGGTGGATTGGGT+TGG + chr1_3:70479532-70479551 Msa0137840:five_prime_UTR 40.0%
!! ATTTGTTGGTGGATTGGGTT+GGG + chr1_3:70479533-70479552 Msa0137840:five_prime_UTR 40.0%
!!! GATTTTGATTCTCGACACTG+CGG + chr1_3:70479896-70479915 Msa0137840:intron 40.0%
ACCGCATCTCAAAGATCAAA+AGG - chr1_3:70480169-70480188 None:intergenic 40.0%
!!! TTTTGATCTTTGAGATGCGG+TGG + chr1_3:70480168-70480187 Msa0137840:intron 40.0%
!! TTTGATCTTTGAGATGCGGT+GGG + chr1_3:70480169-70480188 Msa0137840:intron 40.0%
AGGGATATGAAAGTAGCCAA+GGG + chr1_3:70480325-70480344 Msa0137840:five_prime_UTR 40.0%
AGATCAGACTGATATTCCCT+TGG - chr1_3:70480344-70480363 None:intergenic 40.0%
AGTAAGATTGGGCTGAAAAC+TGG + chr1_3:70480433-70480452 Msa0137840:five_prime_UTR 40.0%
TTACTACTAGAAGAGGAAGG+AGG - chr1_3:70480541-70480560 None:intergenic 40.0%
CCATTAATACCCATCTGCTA+TGG - chr1_3:70480630-70480649 None:intergenic 40.0%
CCATAGCAGATGGGTATTAA+TGG + chr1_3:70480627-70480646 Msa0137840:five_prime_UTR 40.0%
TACATAAAAGGCGGAAGCAA+AGG - chr1_3:70480671-70480690 None:intergenic 40.0%
!! ATCCAAAGCATTGGGATCAT+AGG + chr1_3:70480787-70480806 Msa0137840:five_prime_UTR 40.0%
! GCAATTGCTGCTTAGATAGT+GGG + chr1_3:70480809-70480828 Msa0137840:five_prime_UTR 40.0%
CAGTTACTCAGAATGAAGAG+AGG - chr1_3:70480837-70480856 None:intergenic 40.0%
GTGTTCACCAAGTCAGTTAA+GGG + chr1_3:70481059-70481078 Msa0137840:five_prime_UTR 40.0%
TGTTCACCAAGTCAGTTAAG+GGG + chr1_3:70481060-70481079 Msa0137840:five_prime_UTR 40.0%
! ATTATAATTTGCACCTGGGG+AGG + chr1_3:70481179-70481198 Msa0137840:five_prime_UTR 40.0%
! AGAATACTAGCAAAAGGTGC+TGG + chr1_3:70481202-70481221 Msa0137840:five_prime_UTR 40.0%
AAAGACAACACGCAAGTTAC+AGG - chr1_3:70481290-70481309 None:intergenic 40.0%
AAATTGGAGCTGCAACATAG+TGG + chr1_3:70481387-70481406 Msa0137840:five_prime_UTR 40.0%
GAACACAGAAGTAAGTTGTC+TGG + chr1_3:70481754-70481773 Msa0137840:intron 40.0%
TCTATAATTGATGGGGATGG+GGG + chr1_3:70482094-70482113 Msa0137840:intron 40.0%
CACACAAGATGAGGATACAA+TGG - chr1_3:70482266-70482285 None:intergenic 40.0%
GTATCCTCATCTTGTGTGTA+TGG + chr1_3:70482268-70482287 Msa0137840:intron 40.0%
AGATCCATACACACAAGATG+AGG - chr1_3:70482275-70482294 None:intergenic 40.0%
GTTCTTCCTGTAGATCATGA+TGG + chr1_3:70482500-70482519 Msa0137840:intron 40.0%
! TCCTGTAGATCATGATGGAA+AGG + chr1_3:70482505-70482524 Msa0137840:intron 40.0%
! CCTGTAGATCATGATGGAAA+GGG + chr1_3:70482506-70482525 Msa0137840:intron 40.0%
! ATCATGATGGAAAGGGATAC+AGG + chr1_3:70482513-70482532 Msa0137840:CDS 40.0%
GTAATAAACCCAAATCCACG+TGG - chr1_3:70482543-70482562 None:intergenic 40.0%
! ATTACATTTTCAGACCGTCG+GGG + chr1_3:70482558-70482577 Msa0137840:CDS 40.0%
GGAGGATGCAATCAAAGAAA+TGG + chr1_3:70482584-70482603 Msa0137840:CDS 40.0%
AAAAACCACCTCTGTAACGT+TGG - chr1_3:70482683-70482702 None:intergenic 40.0%
! TACAGAGGTGGTTTTTCTTC+GGG + chr1_3:70482687-70482706 Msa0137840:CDS 40.0%
CAGGATGACTGTTTCAAATG+TGG + chr1_3:70482747-70482766 Msa0137840:CDS 40.0%
! GTTCATTTTCTTCACGTCCT+AGG + chr1_3:70482838-70482857 Msa0137840:CDS 40.0%
! TTTTCTTCACGTCCTAGGTT+TGG + chr1_3:70482843-70482862 Msa0137840:CDS 40.0%
! ATTGATGATCGTTATGACGG+AGG + chr1_3:70482897-70482916 Msa0137840:CDS 40.0%
AACCGAGACTACAAGTATAG+TGG + chr1_3:70482948-70482967 Msa0137840:CDS 40.0%
AAAGCACGAGTGGTGTAATT+CGG - chr1_3:70483021-70483040 None:intergenic 40.0%
TGAAAAGGATCATTAACCCC+TGG + chr1_3:70483384-70483403 Msa0137840:intron 40.0%
GAATGACAAATGGAAACCAG+GGG - chr1_3:70483403-70483422 None:intergenic 40.0%
GGAATGACAAATGGAAACCA+GGG - chr1_3:70483404-70483423 None:intergenic 40.0%
AGGAATGACAAATGGAAACC+AGG - chr1_3:70483405-70483424 None:intergenic 40.0%
AGACCAGAAGGAATGACAAA+TGG - chr1_3:70483413-70483432 None:intergenic 40.0%
ACTACCCGCAAAATGGTTAT+GGG + chr1_3:70483526-70483545 Msa0137840:CDS 40.0%
! TCCTTCCCATAACCATTTTG+CGG - chr1_3:70483534-70483553 None:intergenic 40.0%
AATGGTTATGGGAAGGAAAG+AGG + chr1_3:70483537-70483556 Msa0137840:CDS 40.0%
GTGATGAAGGAAGGAGTTAT+AGG + chr1_3:70483622-70483641 Msa0137840:CDS 40.0%
GATGAAGGAAGGAGTTATAG+GGG + chr1_3:70483624-70483643 Msa0137840:CDS 40.0%
AATCAGTAGCGGTCAAATGA+TGG - chr1_3:70483693-70483712 None:intergenic 40.0%
TGATTGCTACTGTTGCATGT+TGG + chr1_3:70483708-70483727 Msa0137840:exon 40.0%
TCCAAGCTTCAACCTCAACA+AGG + chr1_3:70478931-70478950 Msa0137840:five_prime_UTR 45.0%
CCAAGCTTCAACCTCAACAA+GGG + chr1_3:70478932-70478951 Msa0137840:five_prime_UTR 45.0%
!! TGGATTGGGTTGGGATGTTA+CGG + chr1_3:70479542-70479561 Msa0137840:five_prime_UTR 45.0%
! TAAAGGGTTGGCAGAGAAAG+AGG - chr1_3:70479624-70479643 None:intergenic 45.0%
AATCTGACACCAACCCATTC+AGG - chr1_3:70479737-70479756 None:intergenic 45.0%
CAATCTAGGTCACGAAATCG+TGG - chr1_3:70479962-70479981 None:intergenic 45.0%
CGATTTCGTGACCTAGATTG+CGG + chr1_3:70479962-70479981 Msa0137840:intron 45.0%
! GTTAGGGAAGTTGCGAGTTT+TGG + chr1_3:70480030-70480049 Msa0137840:intron 45.0%
!!! GGAAGTTGCGAGTTTTGGTT+AGG + chr1_3:70480035-70480054 Msa0137840:intron 45.0%
TGTGGTAAAGGTAGAGCTCA+AGG + chr1_3:70480269-70480288 Msa0137840:five_prime_UTR 45.0%
GCTCAAGGTGGAGATTAGTA+TGG + chr1_3:70480284-70480303 Msa0137840:five_prime_UTR 45.0%
CAGGGATATGAAAGTAGCCA+AGG + chr1_3:70480324-70480343 Msa0137840:five_prime_UTR 45.0%
TGCTATTGTTCCGAGAGACA+AGG + chr1_3:70480367-70480386 Msa0137840:five_prime_UTR 45.0%
GAGGTATACCCATAGCAGAT+GGG + chr1_3:70480618-70480637 Msa0137840:five_prime_UTR 45.0%
TACTTTCTGCAACCCATAGC+AGG + chr1_3:70480689-70480708 Msa0137840:five_prime_UTR 45.0%
TGGTCATACACACCTGCTAT+GGG - chr1_3:70480704-70480723 None:intergenic 45.0%
TTGGTCATACACACCTGCTA+TGG - chr1_3:70480705-70480724 None:intergenic 45.0%
! AGCAGCACTAGAGTACTCAT+AGG - chr1_3:70480750-70480769 None:intergenic 45.0%
TGCCTATGATCCCAATGCTT+TGG - chr1_3:70480792-70480811 None:intergenic 45.0%
! GGCAATTGCTGCTTAGATAG+TGG + chr1_3:70480808-70480827 Msa0137840:five_prime_UTR 45.0%
GGTGTTCACCAAGTCAGTTA+AGG + chr1_3:70481058-70481077 Msa0137840:five_prime_UTR 45.0%
GGGAGGAGAATACTAGCAAA+AGG + chr1_3:70481196-70481215 Msa0137840:five_prime_UTR 45.0%
GAGGAACGATGTCAATGCAA+TGG + chr1_3:70481256-70481275 Msa0137840:five_prime_UTR 45.0%
CATGGAGTCATGAACCAGAA+TGG + chr1_3:70481605-70481624 Msa0137840:five_prime_UTR 45.0%
! ACTTAGGAACTGGTTCTCCT+TGG + chr1_3:70482057-70482076 Msa0137840:intron 45.0%
CCCTTTCCATCATGATCTAC+AGG - chr1_3:70482509-70482528 None:intergenic 45.0%
GAAATGGATGGACGGGAAAT+TGG + chr1_3:70482600-70482619 Msa0137840:CDS 45.0%
TCGCATCATCTCAGTCAACA+AGG + chr1_3:70482626-70482645 Msa0137840:CDS 45.0%
! TGGTTTTTCTTCGGGTGGTA+GGG + chr1_3:70482695-70482714 Msa0137840:CDS 45.0%
! GTTATGACGGAGGACGTTAT+GGG + chr1_3:70482907-70482926 Msa0137840:CDS 45.0%
! TTATGACGGAGGACGTTATG+GGG + chr1_3:70482908-70482927 Msa0137840:CDS 45.0%
GGCCACTATACTTGTAGTCT+CGG - chr1_3:70482953-70482972 None:intergenic 45.0%
TGTCACTAGCATAGCGATCA+CGG - chr1_3:70482974-70482993 None:intergenic 45.0%
CGATCTGCAAGTGATCGATA+TGG + chr1_3:70483492-70483511 Msa0137840:CDS 45.0%
GACTACCCGCAAAATGGTTA+TGG + chr1_3:70483525-70483544 Msa0137840:CDS 45.0%
! CCTTCCCATAACCATTTTGC+GGG - chr1_3:70483533-70483552 None:intergenic 45.0%
GAAAGAGGCTATGACCGAAA+CGG + chr1_3:70483552-70483571 Msa0137840:CDS 45.0%
!! GGTGCTGATAGATATGGAAG+CGG + chr1_3:70483588-70483607 Msa0137840:CDS 45.0%
GCAACAGTAGCAATCAGTAG+CGG - chr1_3:70483704-70483723 None:intergenic 45.0%
TCTAACGCAGGAGCAACATT+AGG + chr1_3:70483748-70483767 Msa0137840:three_prime_UTR 45.0%
CTAACGCAGGAGCAACATTA+GGG + chr1_3:70483749-70483768 Msa0137840:three_prime_UTR 45.0%
ACAAACGAGGGGAAGTAACT+AGG - chr1_3:70483887-70483906 None:intergenic 45.0%
ACTAGCGTCAAACAAACGAG+GGG - chr1_3:70483898-70483917 None:intergenic 45.0%
GACTAGCGTCAAACAAACGA+GGG - chr1_3:70483899-70483918 None:intergenic 45.0%
TGACTAGCGTCAAACAAACG+AGG - chr1_3:70483900-70483919 None:intergenic 45.0%
!!! AGTAATAATTTTATATAATT+TGG + chr1_3:70480396-70480415 Msa0137840:five_prime_UTR 5.0%
CCCTTGTTGAGGTTGAAGCT+TGG - chr1_3:70478935-70478954 None:intergenic 50.0%
CGGCAAAATTCTCGAATGCC+AGG + chr1_3:70479596-70479615 Msa0137840:five_prime_UTR 50.0%
!! TTGGCAGAGAAAGAGGTACC+TGG - chr1_3:70479617-70479636 None:intergenic 50.0%
AAGGTCCATGACCGCAATCT+AGG - chr1_3:70479976-70479995 None:intergenic 50.0%
GGTAAAGGTAGAGCTCAAGG+TGG + chr1_3:70480272-70480291 Msa0137840:five_prime_UTR 50.0%
CTACTAGAAGAGGAAGGAGG+CGG - chr1_3:70480538-70480557 None:intergenic 50.0%
CGAGGTATACCCATAGCAGA+TGG + chr1_3:70480617-70480636 Msa0137840:five_prime_UTR 50.0%
TGTCAGTGGTGTATGGTGGT+TGG - chr1_3:70480724-70480743 None:intergenic 50.0%
AACCACCATACACCACTGAC+AGG + chr1_3:70480723-70480742 Msa0137840:five_prime_UTR 50.0%
TAGGACCTGTCAGTGGTGTA+TGG - chr1_3:70480731-70480750 None:intergenic 50.0%
GTACTCATAGGACCTGTCAG+TGG - chr1_3:70480738-70480757 None:intergenic 50.0%
TCACCAAGTCAGTTAAGGGG+TGG + chr1_3:70481063-70481082 Msa0137840:five_prime_UTR 50.0%
TTGCTAGTATTCTCCTCCCC+AGG - chr1_3:70481195-70481214 None:intergenic 50.0%
! TGCATTGACATCGTTCCTCG+TGG - chr1_3:70481255-70481274 None:intergenic 50.0%
CAACACGCAAGTTACAGGCA+TGG - chr1_3:70481285-70481304 None:intergenic 50.0%
GGAGCTGCAACATAGTGGTT+TGG + chr1_3:70481392-70481411 Msa0137840:five_prime_UTR 50.0%
! ATTTTCAGACCGTCGGGGAA+TGG + chr1_3:70482563-70482582 Msa0137840:CDS 50.0%
GATGCAGACCAACGTTACAG+AGG + chr1_3:70482672-70482691 Msa0137840:CDS 50.0%
! AGAGGTGGTTTTTCTTCGGG+TGG + chr1_3:70482690-70482709 Msa0137840:CDS 50.0%
! GTGGTTTTTCTTCGGGTGGT+AGG + chr1_3:70482694-70482713 Msa0137840:CDS 50.0%
! GGTTTTTCTTCGGGTGGTAG+GGG + chr1_3:70482696-70482715 Msa0137840:CDS 50.0%
AAGCTATGGGGCTGGAGATA+GGG + chr1_3:70482719-70482738 Msa0137840:CDS 50.0%
TGTTTCAAATGTGGGCGTCC+AGG + chr1_3:70482756-70482775 Msa0137840:CDS 50.0%
GTTTCAAATGTGGGCGTCCA+GGG + chr1_3:70482757-70482776 Msa0137840:CDS 50.0%
TCCTGCCAAAGGACAATCTC+GGG - chr1_3:70482790-70482809 None:intergenic 50.0%
CTCCTGCCAAAGGACAATCT+CGG - chr1_3:70482791-70482810 None:intergenic 50.0%
TCTTCACGTCCTAGGTTTGG+AGG + chr1_3:70482846-70482865 Msa0137840:CDS 50.0%
CTTCACGTCCTAGGTTTGGA+GGG + chr1_3:70482847-70482866 Msa0137840:CDS 50.0%
TTCACGTCCTAGGTTTGGAG+GGG + chr1_3:70482848-70482867 Msa0137840:CDS 50.0%
TGTATCGCTCACGTTCACCA+AGG - chr1_3:70482878-70482897 None:intergenic 50.0%
! CGTTATGACGGAGGACGTTA+TGG + chr1_3:70482906-70482925 Msa0137840:CDS 50.0%
GTGATCGCTATGCTAGTGAC+AGG + chr1_3:70482973-70482992 Msa0137840:CDS 50.0%
! AGCTATGGCAAAAGCACGAG+TGG - chr1_3:70483031-70483050 None:intergenic 50.0%
GCAAGTGATCGATATGGCAG+TGG + chr1_3:70483498-70483517 Msa0137840:CDS 50.0%
CCCGCAAAATGGTTATGGGA+AGG + chr1_3:70483530-70483549 Msa0137840:CDS 50.0%
!! CGTGGAGGTGCTGATAGATA+TGG + chr1_3:70483582-70483601 Msa0137840:CDS 50.0%
AGGAGTTATAGGGGTAGACC+TGG + chr1_3:70483633-70483652 Msa0137840:CDS 50.0%
CAGTAGCGGTCAAATGATGG+TGG - chr1_3:70483690-70483709 None:intergenic 50.0%
TCACAGTTTCAGACAACCGC+AGG + chr1_3:70483797-70483816 Msa0137840:three_prime_UTR 50.0%
CGTGACCTAGATTGCGGTCA+TGG + chr1_3:70479968-70479987 Msa0137840:intron 55.0%
AGGAGGCGGATGAACAGACA+CGG - chr1_3:70480524-70480543 None:intergenic 55.0%
GCGGAAGCAAAGGCAGCATA+CGG - chr1_3:70480661-70480680 None:intergenic 55.0%
GACCTGTCAGTGGTGTATGG+TGG - chr1_3:70480728-70480747 None:intergenic 55.0%
CTGCCACCCCTTAACTGACT+TGG - chr1_3:70481069-70481088 None:intergenic 55.0%
! GCGAAAGCATGATCTCCACG+AGG + chr1_3:70481237-70481256 Msa0137840:five_prime_UTR 55.0%
ACAGGACGACCACGTGGATT+TGG + chr1_3:70482531-70482550 Msa0137840:CDS 55.0%
CAGGACGACCACGTGGATTT+GGG + chr1_3:70482532-70482551 Msa0137840:CDS 55.0%
TTGCATCCTCCATTCCCCGA+CGG - chr1_3:70482575-70482594 None:intergenic 55.0%
AACAAGGCACAGCCCAGGAT+GGG + chr1_3:70482642-70482661 Msa0137840:CDS 55.0%
GCAGACCAACGTTACAGAGG+TGG + chr1_3:70482675-70482694 Msa0137840:CDS 55.0%
GAAGCTATGGGGCTGGAGAT+AGG + chr1_3:70482718-70482737 Msa0137840:CDS 55.0%
TATGGGGCTGGAGATAGGGT+AGG + chr1_3:70482723-70482742 Msa0137840:CDS 55.0%
CGAGATTGTCCTTTGGCAGG+AGG + chr1_3:70482789-70482808 Msa0137840:CDS 55.0%
TGTCCTTTGGCAGGAGGTGA+TGG + chr1_3:70482795-70482814 Msa0137840:CDS 55.0%
ACGGAGGACGTTATGGGGAT+AGG + chr1_3:70482913-70482932 Msa0137840:CDS 55.0%
CGGAGGACGTTATGGGGATA+GGG + chr1_3:70482914-70482933 Msa0137840:CDS 55.0%
GGCTCAGACTACCCGCAAAA+TGG + chr1_3:70483519-70483538 Msa0137840:CDS 55.0%
AGAGGCTATGACCGAAACGG+TGG + chr1_3:70483555-70483574 Msa0137840:CDS 55.0%
GGAATGCCAGCTCGTGATGA+AGG + chr1_3:70483609-70483628 Msa0137840:CDS 55.0%
TGCCAGCTCGTGATGAAGGA+AGG + chr1_3:70483613-70483632 Msa0137840:CDS 55.0%
CTCCTTCCTTCATCACGAGC+TGG - chr1_3:70483618-70483637 None:intergenic 55.0%
TCCTTATGACCGCCCAAGCA+GGG + chr1_3:70483656-70483675 Msa0137840:CDS 55.0%
CCTGCGTTAGAATCTCTCGC+TGG - chr1_3:70483739-70483758 None:intergenic 55.0%
CCAGCGAGAGATTCTAACGC+AGG + chr1_3:70483736-70483755 Msa0137840:three_prime_UTR 55.0%
TGGGGATGGGGGAAAAGAGC+TGG + chr1_3:70482105-70482124 Msa0137840:intron 60.0%
AGGGATACAGGACGACCACG+TGG + chr1_3:70482525-70482544 Msa0137840:CDS 60.0%
TTCAGACCGTCGGGGAATGG+AGG + chr1_3:70482566-70482585 Msa0137840:CDS 60.0%
CAGTCAACAAGGCACAGCCC+AGG + chr1_3:70482637-70482656 Msa0137840:CDS 60.0%
CAACAAGGCACAGCCCAGGA+TGG + chr1_3:70482641-70482660 Msa0137840:CDS 60.0%
ACAAGGCACAGCCCAGGATG+GGG + chr1_3:70482643-70482662 Msa0137840:CDS 60.0%
GCATCATCACCCCCCATCCT+GGG - chr1_3:70482657-70482676 None:intergenic 60.0%
TGCATCATCACCCCCCATCC+TGG - chr1_3:70482658-70482677 None:intergenic 60.0%
TCGGGTGGTAGGGGAAGCTA+TGG + chr1_3:70482705-70482724 Msa0137840:CDS 60.0%
CGGGTGGTAGGGGAAGCTAT+GGG + chr1_3:70482706-70482725 Msa0137840:CDS 60.0%
GGGTGGTAGGGGAAGCTATG+GGG + chr1_3:70482707-70482726 Msa0137840:CDS 60.0%
GGCTGGAGATAGGGTAGGAC+AGG + chr1_3:70482728-70482747 Msa0137840:CDS 60.0%
CTGGGCCCGAGATTGTCCTT+TGG + chr1_3:70482782-70482801 Msa0137840:CDS 60.0%
GCCCGAGATTGTCCTTTGGC+AGG + chr1_3:70482786-70482805 Msa0137840:CDS 60.0%
CCACCATCACCTCCTGCCAA+AGG - chr1_3:70482801-70482820 None:intergenic 60.0%
! CCTTTGGCAGGAGGTGATGG+TGG + chr1_3:70482798-70482817 Msa0137840:CDS 60.0%
!! GAGGTGATGGTGGTCGTGGT+CGG + chr1_3:70482808-70482827 Msa0137840:CDS 60.0%
!! AGGTGATGGTGGTCGTGGTC+GGG + chr1_3:70482809-70482828 Msa0137840:CDS 60.0%
AGGCGATCCCCTCCAAACCT+AGG - chr1_3:70482858-70482877 None:intergenic 60.0%
AGGTTTGGAGGGGATCGCCT+TGG + chr1_3:70482858-70482877 Msa0137840:CDS 60.0%
CTTGGGCGGTCATAAGGACC+AGG - chr1_3:70483654-70483673 None:intergenic 60.0%
GTCCTTATGACCGCCCAAGC+AGG + chr1_3:70483655-70483674 Msa0137840:CDS 60.0%
CAAGGCACAGCCCAGGATGG+GGG + chr1_3:70482644-70482663 Msa0137840:CDS 65.0%
AAGGCACAGCCCAGGATGGG+GGG + chr1_3:70482645-70482664 Msa0137840:CDS 65.0%
GGTAGGGGAAGCTATGGGGC+TGG + chr1_3:70482711-70482730 Msa0137840:CDS 65.0%
AATGTGGGCGTCCAGGGCAC+TGG + chr1_3:70482763-70482782 Msa0137840:CDS 65.0%
! ATGTGGGCGTCCAGGGCACT+GGG + chr1_3:70482764-70482783 Msa0137840:CDS 65.0%
!! GCAGGAGGTGATGGTGGTCG+TGG + chr1_3:70482804-70482823 Msa0137840:CDS 65.0%
!! GGTGATGGTGGTCGTGGTCG+GGG + chr1_3:70482810-70482829 Msa0137840:CDS 65.0%
CTCCACGCGCACCACCGTTT+CGG - chr1_3:70483569-70483588 None:intergenic 65.0%
GCCCTGCTTGGGCGGTCATA+AGG - chr1_3:70483660-70483679 None:intergenic 65.0%
GTGGACGAGCAGCCCTGCTT+GGG - chr1_3:70483671-70483690 None:intergenic 65.0%
CAATCTCGGGCCCAGTGCCC+TGG - chr1_3:70482777-70482796 None:intergenic 70.0%
! GATGGTGGTCGTGGTCGGGG+TGG + chr1_3:70482813-70482832 Msa0137840:CDS 70.0%
GACCGAAACGGTGGTGCGCG+TGG + chr1_3:70483564-70483583 Msa0137840:CDS 70.0%
CGAAACGGTGGTGCGCGTGG+AGG + chr1_3:70483567-70483586 Msa0137840:CDS 70.0%
GACGAGCAGCCCTGCTTGGG+CGG - chr1_3:70483668-70483687 None:intergenic 70.0%
GGTGGACGAGCAGCCCTGCT+TGG - chr1_3:70483672-70483691 None:intergenic 70.0%
GGTGGTCGTGGTCGGGGTGG+TGG + chr1_3:70482816-70482835 Msa0137840:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 70478881 70483974 70478881 ID=Msa0137840;Name=Msa0137840
chr1_3 mRNA 70478881 70483974 70478881 ID=Msa0137840-mRNA-1;Parent=Msa0137840;Name=Msa0137840-mRNA-1;_AED=0.12;_eAED=0.12;_QI=1788|1|1|1|0.4|0.33|6|264|252
chr1_3 exon 70478881 70478967 70478881 ID=Msa0137840-mRNA-1:exon:24414;Parent=Msa0137840-mRNA-1
chr1_3 exon 70479373 70479399 70479373 ID=Msa0137840-mRNA-1:exon:24415;Parent=Msa0137840-mRNA-1
chr1_3 exon 70479487 70479617 70479487 ID=Msa0137840-mRNA-1:exon:24416;Parent=Msa0137840-mRNA-1
chr1_3 exon 70480182 70481763 70480182 ID=Msa0137840-mRNA-1:exon:24417;Parent=Msa0137840-mRNA-1
chr1_3 exon 70482513 70482994 70482513 ID=Msa0137840-mRNA-1:exon:24418;Parent=Msa0137840-mRNA-1
chr1_3 exon 70483473 70483974 70483473 ID=Msa0137840-mRNA-1:exon:24419;Parent=Msa0137840-mRNA-1
chr1_3 five_prime_UTR 70478881 70478967 70478881 ID=Msa0137840-mRNA-1:five_prime_utr;Parent=Msa0137840-mRNA-1
chr1_3 five_prime_UTR 70479373 70479399 70479373 ID=Msa0137840-mRNA-1:five_prime_utr;Parent=Msa0137840-mRNA-1
chr1_3 five_prime_UTR 70479487 70479617 70479487 ID=Msa0137840-mRNA-1:five_prime_utr;Parent=Msa0137840-mRNA-1
chr1_3 five_prime_UTR 70480182 70481724 70480182 ID=Msa0137840-mRNA-1:five_prime_utr;Parent=Msa0137840-mRNA-1
chr1_3 CDS 70481725 70481763 70481725 ID=Msa0137840-mRNA-1:cds;Parent=Msa0137840-mRNA-1
chr1_3 CDS 70482513 70482994 70482513 ID=Msa0137840-mRNA-1:cds;Parent=Msa0137840-mRNA-1
chr1_3 CDS 70483473 70483710 70483473 ID=Msa0137840-mRNA-1:cds;Parent=Msa0137840-mRNA-1
chr1_3 three_prime_UTR 70483711 70483974 70483711 ID=Msa0137840-mRNA-1:three_prime_utr;Parent=Msa0137840-mRNA-1
Gene Sequence

>Msa0137840

ATGAAAACTATTCTGGTGCTTTGTCATCAGAACACAGAAATCATGATGGAAAGGGATACAGGACGACCACGTGGATTTGGGTTTATTACATTTTCAGACCGTCGGGGAATGGAGGATGCAATCAAAGAAATGGATGGACGGGAAATTGGTGATCGCATCATCTCAGTCAACAAGGCACAGCCCAGGATGGGGGGTGATGATGCAGACCAACGTTACAGAGGTGGTTTTTCTTCGGGTGGTAGGGGAAGCTATGGGGCTGGAGATAGGGTAGGACAGGATGACTGTTTCAAATGTGGGCGTCCAGGGCACTGGGCCCGAGATTGTCCTTTGGCAGGAGGTGATGGTGGTCGTGGTCGGGGTGGTGGTTCATTTTCTTCACGTCCTAGGTTTGGAGGGGATCGCCTTGGTGAACGTGAGCGATACATTGATGATCGTTATGACGGAGGACGTTATGGGGATAGGGATCGTTTAGACAACCGAGACTACAAGTATAGTGGCCGTGATCGCTATGCTAGTGACAGGTATACAACTAGTGGAGATCGATCTGCAAGTGATCGATATGGCAGTGGCTCAGACTACCCGCAAAATGGTTATGGGAAGGAAAGAGGCTATGACCGAAACGGTGGTGCGCGTGGAGGTGCTGATAGATATGGAAGCGGAATGCCAGCTCGTGATGAAGGAAGGAGTTATAGGGGTAGACCTGGTCCTTATGACCGCCCAAGCAGGGCTGCTCGTCCACCATCATTTGACCGCTACTGA
Protein sequence

>Msa0137840

MKTILVLCHQNTEIMMERDTGRPRGFGFITFSDRRGMEDAIKEMDGREIGDRIISVNKAQPRMGGDDADQRYRGGFSSGGRGSYGAGDRVGQDDCFKCGRPGHWARDCPLAGGDGGRGRGGGSFSSRPRFGGDRLGERERYIDDRYDGGRYGDRDRLDNRDYKYSGRDRYASDRYTTSGDRSASDRYGSGSDYPQNGYGKERGYDRNGGARGGADRYGSGMPARDEGRSYRGRPGPYDRPSRAARPPSFDRY*