AlfalfaGEDB | Msa1020680

M. sativa cultivar zhongmu-4 / Msa1020680

KEGG: K12489
GO: GO:0003002 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007275 GO:0007389 GO:0008047 GO:0008150 GO:0008289 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009965 GO:0010016 GO:0010033 GO:0010051 GO:0010087 GO:0012505 GO:0016020 GO:0016192 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030234 GO:0030695 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035091 GO:0042221 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050790 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097708 GO:0098657 GO:0098772 GO:0099402 GO:1905392
PFAM: PF16746.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1020680	XP_003621622.1	98.678	832	11	0	1	832	1	832	0.0	1721

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1020680	sp\|Q5W7F2\|AGD3_ARATH	77.043	832	180	3	1	832	1	821	0.0	1279

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1020680	G7KSV6	98.678	832	11	0	1	832	1	832	0.0	1721

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0230800	Msa1020680	0.819846	9.370693e-53	-8.615850e-47
Msa0230870	Msa1020680	0.817584	3.056888e-52	-8.615850e-47
Msa0436910	Msa1020680	0.804689	1.914722e-49	-8.615850e-47
Msa0541300	Msa1020680	0.802871	4.566951e-49	-8.615850e-47
Msa1020680	Msa1051840	0.922836	5.855271e-89	-8.615850e-47
Msa1020680	Msa1096960	0.903684	2.688463e-79	-8.615850e-47
Msa1020680	Msa1140220	0.867106	1.747480e-65	-8.615850e-47
Msa1020680	Msa1315130	0.815118	1.088948e-51	-8.615850e-47
Msa1020680	Msa1315160	0.836517	8.931867e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1020680	MtrunA17_Chr7g0221441	98.678	832	11	0	1	832	1	832	0.0	1721
Msa1020680	MtrunA17_Chr8g0385781	58.486	819	302	6	1	818	1	782	0.0	976
Msa1020680	MtrunA17_Chr3g0131671	58.223	833	302	9	1	825	1	795	0.0	936
Msa1020680	MtrunA17_Chr4g0037651	47.619	819	363	11	3	818	5	760	0.0	738
Msa1020680	MtrunA17_Chr2g0318391	41.259	143	53	3	500	642	14	125	1.94e-25	110
Msa1020680	MtrunA17_Chr8g0360731	41.259	143	53	3	500	642	14	125	1.24e-24	108
Msa1020680	MtrunA17_Chr8g0352731	34.857	175	84	4	513	686	5	150	2.63e-23	98.6
Msa1020680	MtrunA17_Chr6g0481511	37.908	153	59	4	491	637	17	139	9.38e-23	99.0
Msa1020680	MtrunA17_Chr2g0292461	39.535	129	53	4	514	641	30	134	3.98e-19	89.7
Msa1020680	MtrunA17_Chr3g0083541	38.686	137	59	3	505	640	54	166	1.61e-18	89.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1020680	AT5G13300.1	77.043	832	180	3	1	832	1	821	0.0	1279
Msa1020680	AT5G61980.1	66.626	827	258	9	1	820	1	816	0.0	1085
Msa1020680	AT1G10870.2	44.676	817	397	15	3	818	4	766	0.0	672
Msa1020680	AT1G10870.1	44.798	817	391	16	3	818	4	761	0.0	669
Msa1020680	AT1G60860.1	43.985	823	390	14	3	818	4	762	0.0	662
Msa1020680	AT1G60860.2	42.517	715	340	14	111	818	1	651	0.0	537
Msa1020680	AT1G60860.3	41.140	649	319	13	173	818	3	591	5.13e-153	461
Msa1020680	AT5G54310.1	43.411	129	42	3	514	642	28	125	9.14e-25	109
Msa1020680	AT3G17660.4	35.294	153	63	3	488	640	7	123	2.83e-22	95.5
Msa1020680	AT3G17660.1	36.170	141	59	2	500	640	14	123	7.83e-22	95.5

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Find 203 sgRNAs with CRISPR-Local

Find 657 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAAGAACTACACTTTGC+AGG	0.344247	7_1:-44428377	Msa1020680:intron
AACATTACTAAATTGTTGCT+TGG	0.390803	7_1:+44424979	None:intergenic
AACTGCAGACATTGGAATGG+TGG	0.635357	7_1:-44425991	Msa1020680:CDS
AAGAGAAATCGGGACATACA+AGG	0.560937	7_1:-44432108	Msa1020680:CDS
AAGAGACAGAGAAACAACGT+TGG	0.636811	7_1:+44435390	None:intergenic
AAGATGTGATACATTAGGCT+AGG	0.521762	7_1:-44424921	Msa1020680:three_prime_UTR
AAGCGTTCGTCAAACTTAAG+GGG	0.604023	7_1:-44428796	Msa1020680:CDS
AAGTTCCTCCCAGACAGAGT+TGG	0.637874	7_1:+44427052	None:intergenic
AAGTTTCTTTCACTGAGAAA+AGG	0.500366	7_1:-44429761	Msa1020680:CDS
AATAGTTCGGAGCTTGGTTC+TGG	0.296829	7_1:-44428556	Msa1020680:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CACAAAAAACGATAATTCCT+AGG	+	chr7_1:44425090-44425109	None:intergenic	30.0%
GAATGTAAGGTGAATTTCAT+TGG	-	chr7_1:44425274-44425293	Msa1020680:CDS	30.0%
AAAGTAACCGTAAAAGCTAT+AGG	+	chr7_1:44425794-44425813	None:intergenic	30.0%
TGGTAGAACAATATGATAAC+TGG	-	chr7_1:44426506-44426525	Msa1020680:intron	30.0%
AAACTTCAATTTGCATGACA+TGG	+	chr7_1:44426935-44426954	None:intergenic	30.0%
TTTGTGTATTCTATTCTCCA+TGG	-	chr7_1:44427463-44427482	Msa1020680:intron	30.0%
ATGCTTAAGATGGTTAATGA+AGG	-	chr7_1:44427815-44427834	Msa1020680:CDS	30.0%
TGCTTAAGATGGTTAATGAA+GGG	-	chr7_1:44427816-44427835	Msa1020680:CDS	30.0%
TTGACTAATGTTATCTGTCA+AGG	-	chr7_1:44427973-44427992	Msa1020680:CDS	30.0%
TAGTGAATTTGGTCATAACA+GGG	+	chr7_1:44428164-44428183	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	44424827	44435494	44424827	ID=Msa1020680;Name=Msa1020680
chr7_1	mRNA	44424827	44435494	44424827	ID=Msa1020680-mRNA-1;Parent=Msa1020680;Name=Msa1020680-mRNA-1;_AED=0.12;_eAED=0.12;_QI=294\|1\|1\|1\|1\|1\|19\|438\|832
chr7_1	exon	44424827	44425379	44424827	ID=Msa1020680-mRNA-1:exon:8652;Parent=Msa1020680-mRNA-1
chr7_1	exon	44425876	44426360	44425876	ID=Msa1020680-mRNA-1:exon:8651;Parent=Msa1020680-mRNA-1
chr7_1	exon	44426813	44426906	44426813	ID=Msa1020680-mRNA-1:exon:8650;Parent=Msa1020680-mRNA-1
chr7_1	exon	44427008	44427153	44427008	ID=Msa1020680-mRNA-1:exon:8649;Parent=Msa1020680-mRNA-1
chr7_1	exon	44427782	44428120	44427782	ID=Msa1020680-mRNA-1:exon:8648;Parent=Msa1020680-mRNA-1
chr7_1	exon	44428196	44428282	44428196	ID=Msa1020680-mRNA-1:exon:8647;Parent=Msa1020680-mRNA-1
chr7_1	exon	44428378	44428608	44428378	ID=Msa1020680-mRNA-1:exon:8646;Parent=Msa1020680-mRNA-1
chr7_1	exon	44428717	44428848	44428717	ID=Msa1020680-mRNA-1:exon:8645;Parent=Msa1020680-mRNA-1
chr7_1	exon	44428946	44429161	44428946	ID=Msa1020680-mRNA-1:exon:8644;Parent=Msa1020680-mRNA-1
chr7_1	exon	44429294	44429335	44429294	ID=Msa1020680-mRNA-1:exon:8643;Parent=Msa1020680-mRNA-1
chr7_1	exon	44429413	44429508	44429413	ID=Msa1020680-mRNA-1:exon:8642;Parent=Msa1020680-mRNA-1
chr7_1	exon	44429594	44429641	44429594	ID=Msa1020680-mRNA-1:exon:8641;Parent=Msa1020680-mRNA-1
chr7_1	exon	44429727	44429792	44429727	ID=Msa1020680-mRNA-1:exon:8640;Parent=Msa1020680-mRNA-1
chr7_1	exon	44430144	44430188	44430144	ID=Msa1020680-mRNA-1:exon:8639;Parent=Msa1020680-mRNA-1
chr7_1	exon	44431374	44431436	44431374	ID=Msa1020680-mRNA-1:exon:8638;Parent=Msa1020680-mRNA-1
chr7_1	exon	44432091	44432161	44432091	ID=Msa1020680-mRNA-1:exon:8637;Parent=Msa1020680-mRNA-1
chr7_1	exon	44432533	44432633	44432533	ID=Msa1020680-mRNA-1:exon:8636;Parent=Msa1020680-mRNA-1
chr7_1	exon	44433461	44433537	44433461	ID=Msa1020680-mRNA-1:exon:8635;Parent=Msa1020680-mRNA-1
chr7_1	exon	44435156	44435494	44435156	ID=Msa1020680-mRNA-1:exon:8634;Parent=Msa1020680-mRNA-1
chr7_1	five_prime_UTR	44435201	44435494	44435201	ID=Msa1020680-mRNA-1:five_prime_utr;Parent=Msa1020680-mRNA-1
chr7_1	CDS	44435156	44435200	44435156	ID=Msa1020680-mRNA-1:cds;Parent=Msa1020680-mRNA-1
chr7_1	CDS	44433461	44433537	44433461	ID=Msa1020680-mRNA-1:cds;Parent=Msa1020680-mRNA-1
chr7_1	CDS	44432533	44432633	44432533	ID=Msa1020680-mRNA-1:cds;Parent=Msa1020680-mRNA-1
chr7_1	CDS	44432091	44432161	44432091	ID=Msa1020680-mRNA-1:cds;Parent=Msa1020680-mRNA-1
chr7_1	CDS	44431374	44431436	44431374	ID=Msa1020680-mRNA-1:cds;Parent=Msa1020680-mRNA-1
chr7_1	CDS	44430144	44430188	44430144	ID=Msa1020680-mRNA-1:cds;Parent=Msa1020680-mRNA-1
chr7_1	CDS	44429727	44429792	44429727	ID=Msa1020680-mRNA-1:cds;Parent=Msa1020680-mRNA-1
chr7_1	CDS	44429594	44429641	44429594	ID=Msa1020680-mRNA-1:cds;Parent=Msa1020680-mRNA-1
chr7_1	CDS	44429413	44429508	44429413	ID=Msa1020680-mRNA-1:cds;Parent=Msa1020680-mRNA-1
chr7_1	CDS	44429294	44429335	44429294	ID=Msa1020680-mRNA-1:cds;Parent=Msa1020680-mRNA-1
chr7_1	CDS	44428946	44429161	44428946	ID=Msa1020680-mRNA-1:cds;Parent=Msa1020680-mRNA-1
chr7_1	CDS	44428717	44428848	44428717	ID=Msa1020680-mRNA-1:cds;Parent=Msa1020680-mRNA-1
chr7_1	CDS	44428378	44428608	44428378	ID=Msa1020680-mRNA-1:cds;Parent=Msa1020680-mRNA-1
chr7_1	CDS	44428196	44428282	44428196	ID=Msa1020680-mRNA-1:cds;Parent=Msa1020680-mRNA-1
chr7_1	CDS	44427782	44428120	44427782	ID=Msa1020680-mRNA-1:cds;Parent=Msa1020680-mRNA-1
chr7_1	CDS	44427008	44427153	44427008	ID=Msa1020680-mRNA-1:cds;Parent=Msa1020680-mRNA-1
chr7_1	CDS	44426813	44426906	44426813	ID=Msa1020680-mRNA-1:cds;Parent=Msa1020680-mRNA-1
chr7_1	CDS	44425876	44426360	44425876	ID=Msa1020680-mRNA-1:cds;Parent=Msa1020680-mRNA-1
chr7_1	CDS	44425265	44425379	44425265	ID=Msa1020680-mRNA-1:cds;Parent=Msa1020680-mRNA-1
chr7_1	three_prime_UTR	44424827	44425264	44424827	ID=Msa1020680-mRNA-1:three_prime_utr;Parent=Msa1020680-mRNA-1

Gene Sequence

>Msa1020680

ATGCAATTCGCTAAGCTTGATGATTCTCCCATGTTCCGCAAACAGATACAGGGCATGGAGGAAAGTGCCGAATCTTTGAGAGAGAGAAGTTTGAAATTTTACAAGGGATGCAGAAAATACACGGAAGGACTTGGAGAGGCATATGATGGAGACATTGCATTTGCAAGTGCCCTAGAAACTTTTGGTGGGGGCCATAATGACCCCATCAGTGTAGCTTTTGGAGGCCCTGTTATGACCAAATTCACTATAGCATTAAGAGAAATCGGGACATACAAGGAAGTCCTTCGATCACAGGTTGAGCACATGTTAAATGACAGATTGCTCCAGTTTGTCAATATTGATTTGCAAGAAGTCAAGGAAGCACGAAAACGCTTTGACAAAGCCAGCCTTATCTATGACCAGACTCGTGAAAAGTTTCTTTCACTGAGAAAAGGTACAAAAAGTGATGTAGCTACTGCCCTAGAAGAGGAGCTTCATAGTGCAAGAACTACATTTGAGCAAACTCGATTTAATCTGGTTACTGCTCTCTCAAATGTTGAAGCAAAGAAGAGATTTGAGTTTTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGTTACTTCAAACAGGGGTATGAACTATTACATCAAATGGAGCCGTACATTAACCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCCAATTATGAGCAAGCAGCTCTCAATGAAAGAATGCAAGATTACAAACGACAGATTGATCGAGAAAGTAGGTGGGCTTCTAATGGTTCTAATGGATCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAAGCAGTAATGCAGAATGCTGCCAAAGGAAAGGTTCAGACTATTCGACAAGGTTATCTCTCCAAGCGTTCGTCAAACTTAAGGGGGGACTGGAAAAGGAGATTTTTCGTTCTTGATAGTCGGGGAATGCTGTATTACTACCGTAAACAATGCAGCAAACCATCTGGCTCTAGCAGTCAACATTCTGGTCAGAGGAATAGTTCGGAGCTTGGTTCTGGACTTCTTAGTCGATGGCTGTCTTCTCATCATCATCATCATGGTGGAGTACATGATGAGAAATCCGTTGCTCATCACACTGTGAACCTGCTTACATCAACAATCAAAGTTGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGCATCATTTCACCAACAAAGAACTACACTTTGCAGGCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACAGGTGTTATTGCCTCATTGCTGAGCTCTCAGATTCCTGAAAGGTTGTTGCCGGCAAGTCCAATGGGAAGTGGTCATCTCAGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGACCACTGTGCTGTTGAAGAAAGTACAGCTGATAGATGTTTTGTGTCTTCACACCTGGAGCGTACGTCCAGAAATTTGAACCAGCAGCGATCCTGTAATAAAAGTGAAAAACCAATTGATGTGTTGCGAAGAGTTATTGGGAATGATAAATGTGCTGATTGTGGGGCCCCTGAACCAGATTGGGCATCACTAAATCTTGGCGTTCTTGTTTGCATTGAATGTTCCGGTGTTCATCGAAACCTTGGTGTGCACATATCAAAGGTTCGCTCTCTTACATTGGACGTTAAGGTGTGGGAACCTTCTGTGATAACTTTATTTCAGTCTCTTGGGAATACGTTTGCCAACTCTGTCTGGGAGGAACTTTTGCAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAGGCTCGAGCAAGTCCGATAAGCCACAAACAGTTTTCATCACCAAACCTGGTCAATATGATTCTCTAGCAGTGAAGGAAAAGTTCATCCAGGCAAAGTATGCAGAGAAGATTTTTGTTCGTAGACCGAAGGACAATCAGTACCGACTCTTAGTAGCACAACAGATCTGGGAGGCTGTTCGTGCTAATGACAAGAAAGCCGTATACCGCTACATTGTTAATTCGGATGTTGATGTCAACGTTGTTTATGAGCAAGCATGCAACAACTCTTTAACCCTTGCCAAAGTAATGCTATTACAAGAACAGGCAAACAATGATCACGGCCCTAATTTGGCAGGGAACGCATTGGACTGGTCTTCTAATTGCTCTATGAATTTGGTGGGTACTAAAGAAGGCCAGCCGATGGTCAATCTCGAAGGGTGCACACTACTTCACATTGCTTGTGAAACTGCAGACATTGGAATGGTGGAGCTCCTCCTGCAATATGGCGCAAATATTAATGCAACTGATTTGAGAGGTCGAACTCCTTTACATCGTTGTATTCTCAAAGGAAGATCTATAATTGCAAGATTGCTACTTTCAAGGGGAGGCGATCCTCGAGCTGTGGATGAGGATGGAAGAACCCCTATTGAGCTTGCTGCAGAATCAAATGCTGATGACAGAGTAGTCCATGCTCCATCAAATGATTATAATGGATGA

Protein sequence

>Msa1020680

MQFAKLDDSPMFRKQIQGMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTREKFLSLRKGTKSDVATALEEELHSARTTFEQTRFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQDYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQNAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKPSGSSSQHSGQRNSSELGSGLLSRWLSSHHHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERLLPASPMGSGHLRSTSESSSFESSDFDHCAVEESTADRCFVSSHLERTSRNLNQQRSCNKSEKPIDVLRRVIGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNTFANSVWEELLQSRSAFQVDLVPTGSSKSDKPQTVFITKPGQYDSLAVKEKFIQAKYAEKIFVRRPKDNQYRLLVAQQIWEAVRANDKKAVYRYIVNSDVDVNVVYEQACNNSLTLAKVMLLQEQANNDHGPNLAGNALDWSSNCSMNLVGTKEGQPMVNLEGCTLLHIACETADIGMVELLLQYGANINATDLRGRTPLHRCILKGRSIIARLLLSRGGDPRAVDEDGRTPIELAAESNADDRVVHAPSNDYNG*