Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1021420 | PNY06012.1 | 54.455 | 101 | 23 | 1 | 126 | 203 | 366 | 466 | 7.64e-21 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1021420 | A0A2K3NSK4 | 54.455 | 101 | 23 | 1 | 126 | 203 | 366 | 466 | 3.65e-21 | 102 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0744480 | Msa1021420 | 0.877640 | 5.343076e-69 | -8.615850e-47 |
| Msa1021420 | Msa1095960 | 0.846005 | 2.849207e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1021420 | MtrunA17_Chr7g0252171 | 55.446 | 101 | 22 | 1 | 126 | 203 | 364 | 464 | 9.52e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 77 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATCTCCACTTGCTTTAT+TGG | 0.176059 | 7_1:-45760264 | Msa1021420:CDS |
| CTTCCTTCTTATCTCATAAA+TGG | 0.193129 | 7_1:-45759991 | Msa1021420:three_prime_UTR |
| TAATACATCAGGTGACTTAT+TGG | 0.198252 | 7_1:-45759601 | Msa1021420:three_prime_UTR |
| TAATCAGCAGTAACATTATT+TGG | 0.248198 | 7_1:+45760411 | None:intergenic |
| GGTGAAGTGGCTAACTTCTT+TGG | 0.252456 | 7_1:-45759683 | Msa1021420:three_prime_UTR |
| CTCATAAATGGATGCACTAA+TGG | 0.290935 | 7_1:-45759979 | Msa1021420:three_prime_UTR |
| GAGAGAGAGTGAGAAGGTTC+TGG | 0.296791 | 7_1:+45761861 | None:intergenic |
| AAGAAAGGAACAAAGATATA+TGG | 0.298600 | 7_1:+45759632 | None:intergenic |
| ACTAACATAACGGTCATTAT+TGG | 0.298778 | 7_1:+45759387 | None:intergenic |
| GAAATCATATAGGATGAAAA+AGG | 0.331410 | 7_1:+45760100 | None:intergenic |
| TCACATGCGAACTTGATCTT+TGG | 0.334210 | 7_1:+45760237 | None:intergenic |
| TCCTCCAATGAGTGCGCTAA+TGG | 0.353003 | 7_1:-45759951 | Msa1021420:three_prime_UTR |
| TATGAAAATCAGATTTCAAT+AGG | 0.353141 | 7_1:-45760390 | Msa1021420:CDS |
| AAATATGTCAAAACATATAT+AGG | 0.355946 | 7_1:-45759712 | Msa1021420:three_prime_UTR |
| GAGTGTTGGAACAGAAGTTC+TGG | 0.357889 | 7_1:+45761774 | None:intergenic |
| CAAAACATATATAGGATTCC+TGG | 0.384126 | 7_1:-45759704 | Msa1021420:three_prime_UTR |
| CATGTGATAAACACAGTAAC+AGG | 0.403502 | 7_1:-45760221 | Msa1021420:CDS |
| TTTAAAGGGAGGAATGAATC+AGG | 0.405554 | 7_1:-45760435 | Msa1021420:CDS |
| ATAAAATAACAAACTTCATC+AGG | 0.411509 | 7_1:+45759534 | None:intergenic |
| TGAACTTCTGATGCAATTGT+AGG | 0.413663 | 7_1:-45759410 | Msa1021420:three_prime_UTR |
| CTTTGACGAAATAATACATC+AGG | 0.421986 | 7_1:-45759612 | Msa1021420:three_prime_UTR |
| GAGTGAGAAGGTTCTGGAGA+TGG | 0.425661 | 7_1:+45761867 | None:intergenic |
| GAGTGAGAAAGAGAGGTTCC+TGG | 0.427374 | 7_1:+45761828 | None:intergenic |
| TATTTAGGCAGCAAGGCAAT+TGG | 0.434701 | 7_1:-45760463 | Msa1021420:intron |
| AGAAAGGAACAAAGATATAT+GGG | 0.447690 | 7_1:+45759633 | None:intergenic |
| TGTATTATTTCGTCAAAGAA+AGG | 0.463318 | 7_1:+45759617 | None:intergenic |
| GTCTCCATTAGCGCACTCAT+TGG | 0.465837 | 7_1:+45759947 | None:intergenic |
| ACGTGAAAGGGTAGCGGGAT+AGG | 0.475618 | 7_1:+45761977 | None:intergenic |
| TAATTTGCAGGCAGAAGGCT+TGG | 0.477127 | 7_1:-45760288 | Msa1021420:intron |
| CACAGTAACAGGCTTCCAAC+AGG | 0.481101 | 7_1:-45760210 | Msa1021420:CDS |
| CTCAAAGTAATATTAGATAT+AGG | 0.489671 | 7_1:+45759746 | None:intergenic |
| TCTCTCTCCCTCACAGCTCC+AGG | 0.492855 | 7_1:-45761846 | Msa1021420:CDS |
| CATCCATTTATGAGATAAGA+AGG | 0.498458 | 7_1:+45759988 | None:intergenic |
| AGAGGTTCCTGGAGCTGTGA+GGG | 0.500020 | 7_1:+45761839 | None:intergenic |
| AAAAGTGCGCCACACGTGAA+AGG | 0.504445 | 7_1:+45761964 | None:intergenic |
| AAAGTGCGCCACACGTGAAA+GGG | 0.506917 | 7_1:+45761965 | None:intergenic |
| AAACACATACACATTAGTTA+TGG | 0.511165 | 7_1:-45759923 | Msa1021420:intron |
| TCCATTAGCGCACTCATTGG+AGG | 0.514548 | 7_1:+45759950 | None:intergenic |
| TTTCTTAATTTGCAGGCAGA+AGG | 0.528909 | 7_1:-45760293 | Msa1021420:intron |
| TGTCTAGAACTCTTCTGGGA+TGG | 0.529191 | 7_1:-45759789 | Msa1021420:three_prime_UTR |
| TGAGGGAGACAGTGATGGAA+TGG | 0.541483 | 7_1:+45761647 | None:intergenic |
| GCCACAGGTTTCCACTGCAA+AGG | 0.543513 | 7_1:-45759816 | Msa1021420:intron |
| GACAACGAAGAGAGTGACAG+AGG | 0.548492 | 7_1:+45761743 | None:intergenic |
| TTCTTGATATTTAGGCAGCA+AGG | 0.550166 | 7_1:-45760470 | Msa1021420:intron |
| CGCCACACGTGAAAGGGTAG+CGG | 0.554267 | 7_1:+45761971 | None:intergenic |
| AAGAAGTTAGCCACTTCACC+AGG | 0.558942 | 7_1:+45759686 | None:intergenic |
| AGAGAGTGAGAGTGATGGAG+CGG | 0.564177 | 7_1:+45761691 | None:intergenic |
| CTCTATGAGGGAGACAGTGA+TGG | 0.564661 | 7_1:+45761642 | None:intergenic |
| CAGAGGGAGAGAGTGAGTGT+TGG | 0.569370 | 7_1:+45761760 | None:intergenic |
| ACCTCTCTTTCTCACTCTCA+CGG | 0.570435 | 7_1:-45761822 | Msa1021420:CDS |
| ATATAGGATTCCTGGTGAAG+TGG | 0.572171 | 7_1:-45759696 | Msa1021420:three_prime_UTR |
| GAGGGAGAGAGTGAGAGTGA+TGG | 0.573929 | 7_1:+45761686 | None:intergenic |
| TGGTTTACCAATAAAGCAAG+TGG | 0.574147 | 7_1:+45760257 | None:intergenic |
| GCCACACGTGAAAGGGTAGC+GGG | 0.575051 | 7_1:+45761972 | None:intergenic |
| ATGAAGTGAATCAAAGGAGA+GGG | 0.586945 | 7_1:+45761931 | None:intergenic |
| TCCCGCTACCCTTTCACGTG+TGG | 0.592790 | 7_1:-45761973 | Msa1021420:CDS |
| GCCGTGAGAGTGAGAAAGAG+AGG | 0.594932 | 7_1:+45761821 | None:intergenic |
| TTAGCGCACTCATTGGAGGA+AGG | 0.595443 | 7_1:+45759954 | None:intergenic |
| TAGCGCACTCATTGGAGGAA+GGG | 0.596922 | 7_1:+45759955 | None:intergenic |
| AGTGACGGCGGCGAGTGAGA+CGG | 0.601405 | 7_1:+45761799 | None:intergenic |
| CATCACTGTCTCCCTCATAG+AGG | 0.602023 | 7_1:-45761641 | Msa1021420:intron |
| TGCAACGGCTACAGTAACAG+AGG | 0.604475 | 7_1:+45761716 | None:intergenic |
| AAAGCGTGAAACTAACATAA+CGG | 0.608728 | 7_1:+45759377 | None:intergenic |
| TATGACTAGAGTGCACCTGT+TGG | 0.613837 | 7_1:+45760195 | None:intergenic |
| AGTGATGGAGCGGTTTGCAA+CGG | 0.620178 | 7_1:+45761701 | None:intergenic |
| ACAACGAAGAGAGTGACAGA+GGG | 0.627741 | 7_1:+45761744 | None:intergenic |
| GAATGGAACGATGAGAGTGA+CGG | 0.633619 | 7_1:+45761664 | None:intergenic |
| GTGAGGGAGAGAGAGTGAGA+AGG | 0.635071 | 7_1:+45761855 | None:intergenic |
| GAGAGGTTCCTGGAGCTGTG+AGG | 0.635130 | 7_1:+45761838 | None:intergenic |
| TGGAACGATGAGAGTGACGG+AGG | 0.636331 | 7_1:+45761667 | None:intergenic |
| GCAACGGCTACAGTAACAGA+GGG | 0.637006 | 7_1:+45761717 | None:intergenic |
| AATGAAGTGAATCAAAGGAG+AGG | 0.637383 | 7_1:+45761930 | None:intergenic |
| ACAGAAGTTCTGGAGAGTGA+CGG | 0.642423 | 7_1:+45761784 | None:intergenic |
| GGAACGATGAGAGTGACGGA+GGG | 0.642773 | 7_1:+45761668 | None:intergenic |
| ACAAAGCATATAAGTTAACA+TGG | 0.643457 | 7_1:+45760015 | None:intergenic |
| GATTTCAATAGGCTATGATG+AGG | 0.681055 | 7_1:-45760379 | Msa1021420:intron |
| GAAGTTCTGGAGAGTGACGG+CGG | 0.708666 | 7_1:+45761787 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATAAATCAATTTTTTATT+TGG | - | chr7_1:45759806-45759825 | Msa1021420:three_prime_UTR | 10.0% |
| !!! | CATAAATCAATTTTTTATTT+GGG | - | chr7_1:45759807-45759826 | Msa1021420:three_prime_UTR | 10.0% |
| !! | AAAAAAATAAGAAATCATAT+AGG | + | chr7_1:45761320-45761339 | None:intergenic | 10.0% |
| !!! | ATAATTTTGATAGATATTAT+TGG | - | chr7_1:45761359-45761378 | Msa1021420:intron | 10.0% |
| !!! | AATTTTTTATTTGGGAATTA+GGG | - | chr7_1:45759815-45759834 | Msa1021420:intron | 15.0% |
| !! | TTGATGAAAAATCAATATTT+AGG | - | chr7_1:45759909-45759928 | Msa1021420:intron | 15.0% |
| !! | TGATGAAAAATCAATATTTA+GGG | - | chr7_1:45759910-45759929 | Msa1021420:intron | 15.0% |
| !!! | TTACAATTTAAGACAATTTA+AGG | - | chr7_1:45759955-45759974 | Msa1021420:three_prime_UTR | 15.0% |
| !! | AACAATAGACATAATAATAT+TGG | + | chr7_1:45760237-45760256 | None:intergenic | 15.0% |
| !! | AAATATGTCAAAACATATAT+AGG | - | chr7_1:45761695-45761714 | Msa1021420:CDS | 15.0% |
| !!! | CAATTTTTTATTTGGGAATT+AGG | - | chr7_1:45759814-45759833 | Msa1021420:intron | 20.0% |
| !!! | TCAATGAAATTGATAGTTAT+AGG | - | chr7_1:45759869-45759888 | Msa1021420:intron | 20.0% |
| !!! | CAATGAAATTGATAGTTATA+GGG | - | chr7_1:45759870-45759889 | Msa1021420:intron | 20.0% |
| !! | TGTAATATTGCAGAAAATAT+TGG | + | chr7_1:45759940-45759959 | None:intergenic | 20.0% |
| !! | ATCAAAACATTCATGATTAT+TGG | + | chr7_1:45760085-45760104 | None:intergenic | 20.0% |
| !!! | AATAATCATGAATGTTTTGA+TGG | - | chr7_1:45760084-45760103 | Msa1021420:three_prime_UTR | 20.0% |
| !! | AAAATAATCCAACACAATAA+AGG | + | chr7_1:45760184-45760203 | None:intergenic | 20.0% |
| !! | GCTAATAATAGTTTAATTCT+TGG | - | chr7_1:45760371-45760390 | Msa1021420:intron | 20.0% |
| !! | AATAGTTTAATTCTTGGTTT+AGG | - | chr7_1:45760377-45760396 | Msa1021420:intron | 20.0% |
| !!! | TATTTTTCACTATGTCAATT+AGG | - | chr7_1:45760463-45760482 | Msa1021420:intron | 20.0% |
| !! | TATGAAAATCAGATTTCAAT+AGG | - | chr7_1:45761017-45761036 | Msa1021420:intron | 20.0% |
| !! | TGCAAAAAGAAAAACAAAAA+AGG | + | chr7_1:45761252-45761271 | None:intergenic | 20.0% |
| !! | TAGTAAAAACAAGTCATTAA+TGG | + | chr7_1:45761281-45761300 | None:intergenic | 20.0% |
| !! | CTCAAAGTAATATTAGATAT+AGG | + | chr7_1:45761664-45761683 | None:intergenic | 20.0% |
| !! | ATAAAATAACAAACTTCATC+AGG | + | chr7_1:45761876-45761895 | None:intergenic | 20.0% |
| !! | AAAATTGCCTTAATTTTGTG+GGG | + | chr7_1:45759398-45759417 | None:intergenic | 25.0% |
| !! | GAAAATTGCCTTAATTTTGT+GGG | + | chr7_1:45759399-45759418 | None:intergenic | 25.0% |
| !! | TTTTCAATGAAGTGAATCAA+AGG | + | chr7_1:45759485-45759504 | None:intergenic | 25.0% |
| ! | GAATAAAAATACCTCTATGA+GGG | + | chr7_1:45759780-45759799 | None:intergenic | 25.0% |
| ! | AGAATAAAAATACCTCTATG+AGG | + | chr7_1:45759781-45759800 | None:intergenic | 25.0% |
| !! | AGTTGTATGAAGTTTGTTTA+TGG | + | chr7_1:45760002-45760021 | None:intergenic | 25.0% |
| !! | TAATGAACTTTGTTGTCTTA+GGG | - | chr7_1:45760055-45760074 | Msa1021420:three_prime_UTR | 25.0% |
| !! | GATGGTTGAAATATAACTTT+TGG | - | chr7_1:45760102-45760121 | Msa1021420:three_prime_UTR | 25.0% |
| !!! | ATTATTTTTCGCTTCTATGT+TGG | - | chr7_1:45760196-45760215 | Msa1021420:CDS | 25.0% |
| ! | TGTTCTAATTAAACTCTGTT+TGG | - | chr7_1:45760253-45760272 | Msa1021420:CDS | 25.0% |
| !! | GTTAGAAAGTTTCTAGATAA+TGG | - | chr7_1:45760291-45760310 | Msa1021420:intron | 25.0% |
| ! | GTTTATTCACTATGTCAATT+AGG | - | chr7_1:45760411-45760430 | Msa1021420:CDS | 25.0% |
| !!! | ATTTTAAGACACAATTTGTC+AGG | - | chr7_1:45760758-45760777 | Msa1021420:intron | 25.0% |
| ! | TCTCATATATCATTCTTACT+TGG | - | chr7_1:45760892-45760911 | Msa1021420:intron | 25.0% |
| ! | TTCCTTTCTTCTTGATATTT+AGG | - | chr7_1:45760929-45760948 | Msa1021420:intron | 25.0% |
| !!! | AGGCAATTGGAATTTTTTAA+AGG | - | chr7_1:45760957-45760976 | Msa1021420:intron | 25.0% |
| !!! | GGCAATTGGAATTTTTTAAA+GGG | - | chr7_1:45760958-45760977 | Msa1021420:intron | 25.0% |
| !!! | AATTGGAATTTTTTAAAGGG+AGG | - | chr7_1:45760961-45760980 | Msa1021420:intron | 25.0% |
| ! | TAATCAGCAGTAACATTATT+TGG | + | chr7_1:45760999-45761018 | None:intergenic | 25.0% |
| ! | GAAATCATATAGGATGAAAA+AGG | + | chr7_1:45761310-45761329 | None:intergenic | 25.0% |
| ! | ACAAAGCATATAAGTTAACA+TGG | + | chr7_1:45761395-45761414 | None:intergenic | 25.0% |
| ! | AAACACATACACATTAGTTA+TGG | - | chr7_1:45761484-45761503 | Msa1021420:intron | 25.0% |
| ! | GGTATTCAAACACATTTATT+TGG | - | chr7_1:45761505-45761524 | Msa1021420:intron | 25.0% |
| ! | AGAAAGGAACAAAGATATAT+GGG | + | chr7_1:45761777-45761796 | None:intergenic | 25.0% |
| ! | AAGAAAGGAACAAAGATATA+TGG | + | chr7_1:45761778-45761797 | None:intergenic | 25.0% |
| ! | TGTATTATTTCGTCAAAGAA+AGG | + | chr7_1:45761793-45761812 | None:intergenic | 25.0% |
| !! | GCAATTTTCATCTATCATTT+TGG | + | chr7_1:45761943-45761962 | None:intergenic | 25.0% |
| ! | AAATTGCCTTAATTTTGTGG+GGG | + | chr7_1:45759397-45759416 | None:intergenic | 30.0% |
| ! | GGAAAATTGCCTTAATTTTG+TGG | + | chr7_1:45759400-45759419 | None:intergenic | 30.0% |
| ! | GTAATGAACTTTGTTGTCTT+AGG | - | chr7_1:45760054-45760073 | Msa1021420:three_prime_UTR | 30.0% |
| TATACCATCCTTTATTGTGT+TGG | - | chr7_1:45760173-45760192 | Msa1021420:CDS | 30.0% | |
| TAATCCAACACAATAAAGGA+TGG | + | chr7_1:45760180-45760199 | None:intergenic | 30.0% | |
| TGCCTAAATATCAAGAAGAA+AGG | + | chr7_1:45760934-45760953 | None:intergenic | 30.0% | |
| CTTCCTTCTTATCTCATAAA+TGG | - | chr7_1:45761416-45761435 | Msa1021420:intron | 30.0% | |
| CATCCATTTATGAGATAAGA+AGG | + | chr7_1:45761422-45761441 | None:intergenic | 30.0% | |
| !! | TTTTTGTCTAGAACTCTTCT+GGG | - | chr7_1:45761614-45761633 | Msa1021420:intron | 30.0% |
| CAAAACATATATAGGATTCC+TGG | - | chr7_1:45761703-45761722 | Msa1021420:CDS | 30.0% | |
| CTTTGACGAAATAATACATC+AGG | - | chr7_1:45761795-45761814 | Msa1021420:CDS | 30.0% | |
| TAATACATCAGGTGACTTAT+TGG | - | chr7_1:45761806-45761825 | Msa1021420:CDS | 30.0% | |
| ACTAACATAACGGTCATTAT+TGG | + | chr7_1:45762023-45762042 | None:intergenic | 30.0% | |
| AAAGCGTGAAACTAACATAA+CGG | + | chr7_1:45762033-45762052 | None:intergenic | 30.0% | |
| TTCAAACCCCCACAAAATTA+AGG | - | chr7_1:45759388-45759407 | Msa1021420:three_prime_UTR | 35.0% | |
| AGCGGGATAGGTTAAAAATT+AGG | + | chr7_1:45759421-45759440 | None:intergenic | 35.0% | |
| ATGAAGTGAATCAAAGGAGA+GGG | + | chr7_1:45759479-45759498 | None:intergenic | 35.0% | |
| AATGAAGTGAATCAAAGGAG+AGG | + | chr7_1:45759480-45759499 | None:intergenic | 35.0% | |
| TTATGGCTAGTGATAGCTAT+TGG | + | chr7_1:45759985-45760004 | None:intergenic | 35.0% | |
| TAATTCTTGGTTTAGGCAGA+TGG | - | chr7_1:45760384-45760403 | Msa1021420:CDS | 35.0% | |
| AGACAACAAACTTCAAACCA+GGG | + | chr7_1:45760439-45760458 | None:intergenic | 35.0% | |
| TAGACAACAAACTTCAAACC+AGG | + | chr7_1:45760440-45760459 | None:intergenic | 35.0% | |
| AGACAACAAACTTCAAACCA+GGG | + | chr7_1:45760439-45760458 | None:intergenic | 35.0% | |
| TAGACAACAAACTTCAAACC+AGG | + | chr7_1:45760440-45760459 | None:intergenic | 35.0% | |
| ! | TGTTGATACAATGCATTGAC+TGG | + | chr7_1:45760611-45760630 | None:intergenic | 35.0% |
| TTGTATCAACACCATATACC+AGG | - | chr7_1:45760620-45760639 | Msa1021420:intron | 35.0% | |
| TGTATCAACACCATATACCA+GGG | - | chr7_1:45760621-45760640 | Msa1021420:intron | 35.0% | |
| GTAAAAATAACTAACTCCCC+TGG | + | chr7_1:45760641-45760660 | None:intergenic | 35.0% | |
| TGAGCTCTCTAAATTATGTG+TGG | + | chr7_1:45760731-45760750 | None:intergenic | 35.0% | |
| TTGCTCATCCAAATGCATAT+TGG | - | chr7_1:45760785-45760804 | Msa1021420:intron | 35.0% | |
| TAACCAGTCCAATATGCATT+TGG | + | chr7_1:45760796-45760815 | None:intergenic | 35.0% | |
| !!! | GGACTGGTTATTTTACAAGT+AGG | - | chr7_1:45760806-45760825 | Msa1021420:intron | 35.0% |
| TCATGTAACCCTATAAAGCT+TGG | + | chr7_1:45760832-45760851 | None:intergenic | 35.0% | |
| GGTTACATGAGAATAAAGAG+TGG | - | chr7_1:45760842-45760861 | Msa1021420:intron | 35.0% | |
| TTCTTGATATTTAGGCAGCA+AGG | - | chr7_1:45760937-45760956 | Msa1021420:intron | 35.0% | |
| TTTAAAGGGAGGAATGAATC+AGG | - | chr7_1:45760972-45760991 | Msa1021420:intron | 35.0% | |
| GATTTCAATAGGCTATGATG+AGG | - | chr7_1:45761028-45761047 | Msa1021420:intron | 35.0% | |
| !! | TCCACGATTTCTTAATTTGC+AGG | - | chr7_1:45761107-45761126 | Msa1021420:intron | 35.0% |
| !! | TTTCTTAATTTGCAGGCAGA+AGG | - | chr7_1:45761114-45761133 | Msa1021420:intron | 35.0% |
| TGGTTTACCAATAAAGCAAG+TGG | + | chr7_1:45761153-45761172 | None:intergenic | 35.0% | |
| CATGTGATAAACACAGTAAC+AGG | - | chr7_1:45761186-45761205 | Msa1021420:intron | 35.0% | |
| CTCATAAATGGATGCACTAA+TGG | - | chr7_1:45761428-45761447 | Msa1021420:intron | 35.0% | |
| !! | GTTTTTGTCTAGAACTCTTC+TGG | - | chr7_1:45761613-45761632 | Msa1021420:intron | 35.0% |
| TGAACTTCTGATGCAATTGT+AGG | - | chr7_1:45761997-45762016 | Msa1021420:CDS | 35.0% | |
| ATCCTGAGAGAATACCAGTA+TGG | + | chr7_1:45760585-45760604 | None:intergenic | 40.0% | |
| ATACTGGTATTCTCTCAGGA+TGG | - | chr7_1:45760584-45760603 | Msa1021420:intron | 40.0% | |
| GTATCAACACCATATACCAG+GGG | - | chr7_1:45760622-45760641 | Msa1021420:intron | 40.0% | |
| TAACTAACTCCCCTGGTATA+TGG | + | chr7_1:45760634-45760653 | None:intergenic | 40.0% | |
| CATCCAAATGCATATTGGAC+TGG | - | chr7_1:45760790-45760809 | Msa1021420:intron | 40.0% | |
| ! | ACAAGTAGGCCAAGCTTTAT+AGG | - | chr7_1:45760820-45760839 | Msa1021420:intron | 40.0% |
| ! | CAAGTAGGCCAAGCTTTATA+GGG | - | chr7_1:45760821-45760840 | Msa1021420:intron | 40.0% |
| TATTTAGGCAGCAAGGCAAT+TGG | - | chr7_1:45760944-45760963 | Msa1021420:intron | 40.0% | |
| GCCTGCAAATTAAGAAATCG+TGG | + | chr7_1:45761111-45761130 | None:intergenic | 40.0% | |
| TGCATCTCCACTTGCTTTAT+TGG | - | chr7_1:45761143-45761162 | Msa1021420:intron | 40.0% | |
| TCACATGCGAACTTGATCTT+TGG | + | chr7_1:45761173-45761192 | None:intergenic | 40.0% | |
| CTAGACAAAAACCTTTGCAG+TGG | + | chr7_1:45761605-45761624 | None:intergenic | 40.0% | |
| ATATAGGATTCCTGGTGAAG+TGG | - | chr7_1:45761711-45761730 | Msa1021420:CDS | 40.0% | |
| ACCTCTCTTTCTCACTCTCA+CGG | - | chr7_1:45759585-45759604 | Msa1021420:three_prime_UTR | 45.0% | |
| !! | ACAGAAGTTCTGGAGAGTGA+CGG | + | chr7_1:45759626-45759645 | None:intergenic | 45.0% |
| !! | GAGTGTTGGAACAGAAGTTC+TGG | + | chr7_1:45759636-45759655 | None:intergenic | 45.0% |
| ACAACGAAGAGAGTGACAGA+GGG | + | chr7_1:45759666-45759685 | None:intergenic | 45.0% | |
| GAATGGAACGATGAGAGTGA+CGG | + | chr7_1:45759746-45759765 | None:intergenic | 45.0% | |
| ACTATGTCAATTAGGAGCCC+TGG | - | chr7_1:45760419-45760438 | Msa1021420:CDS | 45.0% | |
| ACTATGTCAATTAGGAGCCC+TGG | - | chr7_1:45760419-45760438 | Msa1021420:CDS | 45.0% | |
| ACTCACTGTTCATGCCATAC+TGG | - | chr7_1:45760568-45760587 | Msa1021420:intron | 45.0% | |
| TGCCATACTGGTATTCTCTC+AGG | - | chr7_1:45760580-45760599 | Msa1021420:intron | 45.0% | |
| AATAGGAAGTGAGAGATGCG+AGG | + | chr7_1:45760679-45760698 | None:intergenic | 45.0% | |
| !! | AGCTTTGAAGTGAAGGGGAA+GGG | + | chr7_1:45760707-45760726 | None:intergenic | 45.0% |
| !! | TGTGGCAGCTTTGAAGTGAA+GGG | + | chr7_1:45760713-45760732 | None:intergenic | 45.0% |
| ! | TAATTTGCAGGCAGAAGGCT+TGG | - | chr7_1:45761119-45761138 | Msa1021420:intron | 45.0% |
| TATGACTAGAGTGCACCTGT+TGG | + | chr7_1:45761215-45761234 | None:intergenic | 45.0% | |
| CTTCAGAACATACTTGCCAC+AGG | - | chr7_1:45761576-45761595 | Msa1021420:intron | 45.0% | |
| ! | TGTCTAGAACTCTTCTGGGA+TGG | - | chr7_1:45761618-45761637 | Msa1021420:intron | 45.0% |
| AAGAAGTTAGCCACTTCACC+AGG | + | chr7_1:45761724-45761743 | None:intergenic | 45.0% | |
| GGTGAAGTGGCTAACTTCTT+TGG | - | chr7_1:45761724-45761743 | Msa1021420:CDS | 45.0% | |
| !!! | GTTATTTTATTTTTTAATTT+AGG | - | chr7_1:45761886-45761905 | Msa1021420:CDS | 5.0% |
| AAAGTGCGCCACACGTGAAA+GGG | + | chr7_1:45759445-45759464 | None:intergenic | 50.0% | |
| ! | AAAAGTGCGCCACACGTGAA+AGG | + | chr7_1:45759446-45759465 | None:intergenic | 50.0% |
| !! | GAGTGAGAAGGTTCTGGAGA+TGG | + | chr7_1:45759543-45759562 | None:intergenic | 50.0% |
| GAGAGAGAGTGAGAAGGTTC+TGG | + | chr7_1:45759549-45759568 | None:intergenic | 50.0% | |
| GAGTGAGAAAGAGAGGTTCC+TGG | + | chr7_1:45759582-45759601 | None:intergenic | 50.0% | |
| GACAACGAAGAGAGTGACAG+AGG | + | chr7_1:45759667-45759686 | None:intergenic | 50.0% | |
| GCAACGGCTACAGTAACAGA+GGG | + | chr7_1:45759693-45759712 | None:intergenic | 50.0% | |
| TGCAACGGCTACAGTAACAG+AGG | + | chr7_1:45759694-45759713 | None:intergenic | 50.0% | |
| ! | AGTGATGGAGCGGTTTGCAA+CGG | + | chr7_1:45759709-45759728 | None:intergenic | 50.0% |
| ! | AGAGAGTGAGAGTGATGGAG+CGG | + | chr7_1:45759719-45759738 | None:intergenic | 50.0% |
| ! | TGAGGGAGACAGTGATGGAA+TGG | + | chr7_1:45759763-45759782 | None:intergenic | 50.0% |
| CTCTATGAGGGAGACAGTGA+TGG | + | chr7_1:45759768-45759787 | None:intergenic | 50.0% | |
| CATCACTGTCTCCCTCATAG+AGG | - | chr7_1:45759766-45759785 | Msa1021420:three_prime_UTR | 50.0% | |
| !! | CAGCTTTGAAGTGAAGGGGA+AGG | + | chr7_1:45760708-45760727 | None:intergenic | 50.0% |
| !! | GTGGCAGCTTTGAAGTGAAG+GGG | + | chr7_1:45760712-45760731 | None:intergenic | 50.0% |
| !! | GTGTGGCAGCTTTGAAGTGA+AGG | + | chr7_1:45760714-45760733 | None:intergenic | 50.0% |
| CACAGTAACAGGCTTCCAAC+AGG | - | chr7_1:45761197-45761216 | Msa1021420:intron | 50.0% | |
| TAGCGCACTCATTGGAGGAA+GGG | + | chr7_1:45761455-45761474 | None:intergenic | 50.0% | |
| TTAGCGCACTCATTGGAGGA+AGG | + | chr7_1:45761456-45761475 | None:intergenic | 50.0% | |
| TCCTCCAATGAGTGCGCTAA+TGG | - | chr7_1:45761456-45761475 | Msa1021420:intron | 50.0% | |
| TCCATTAGCGCACTCATTGG+AGG | + | chr7_1:45761460-45761479 | None:intergenic | 50.0% | |
| GTCTCCATTAGCGCACTCAT+TGG | + | chr7_1:45761463-45761482 | None:intergenic | 50.0% | |
| ACCTTTGCAGTGGAAACCTG+TGG | + | chr7_1:45761595-45761614 | None:intergenic | 50.0% | |
| !! | ACGTGAAAGGGTAGCGGGAT+AGG | + | chr7_1:45759433-45759452 | None:intergenic | 55.0% |
| GTGAGGGAGAGAGAGTGAGA+AGG | + | chr7_1:45759555-45759574 | None:intergenic | 55.0% | |
| AGAGGTTCCTGGAGCTGTGA+GGG | + | chr7_1:45759571-45759590 | None:intergenic | 55.0% | |
| GCCGTGAGAGTGAGAAAGAG+AGG | + | chr7_1:45759589-45759608 | None:intergenic | 55.0% | |
| !! | GAAGTTCTGGAGAGTGACGG+CGG | + | chr7_1:45759623-45759642 | None:intergenic | 55.0% |
| CAGAGGGAGAGAGTGAGTGT+TGG | + | chr7_1:45759650-45759669 | None:intergenic | 55.0% | |
| GAGGGAGAGAGTGAGAGTGA+TGG | + | chr7_1:45759724-45759743 | None:intergenic | 55.0% | |
| ! | GGAACGATGAGAGTGACGGA+GGG | + | chr7_1:45759742-45759761 | None:intergenic | 55.0% |
| TGGAACGATGAGAGTGACGG+AGG | + | chr7_1:45759743-45759762 | None:intergenic | 55.0% | |
| GAAGGGGAAGGGACAGGAAT+AGG | + | chr7_1:45760696-45760715 | None:intergenic | 55.0% | |
| TGAAGTGAAGGGGAAGGGAC+AGG | + | chr7_1:45760702-45760721 | None:intergenic | 55.0% | |
| GCCACAGGTTTCCACTGCAA+AGG | - | chr7_1:45761591-45761610 | Msa1021420:intron | 55.0% | |
| TCCCGCTACCCTTTCACGTG+TGG | - | chr7_1:45759434-45759453 | Msa1021420:three_prime_UTR | 60.0% | |
| GCCACACGTGAAAGGGTAGC+GGG | + | chr7_1:45759438-45759457 | None:intergenic | 60.0% | |
| CGCCACACGTGAAAGGGTAG+CGG | + | chr7_1:45759439-45759458 | None:intergenic | 60.0% | |
| TCTCTCTCCCTCACAGCTCC+AGG | - | chr7_1:45759561-45759580 | Msa1021420:three_prime_UTR | 60.0% | |
| GAGAGGTTCCTGGAGCTGTG+AGG | + | chr7_1:45759572-45759591 | None:intergenic | 60.0% | |
| AGTGACGGCGGCGAGTGAGA+CGG | + | chr7_1:45759611-45759630 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 45759368 | 45762061 | 45759368 | ID=Msa1021420;Name=Msa1021420 |
| chr7_1 | mRNA | 45759368 | 45762061 | 45759368 | ID=Msa1021420-mRNA-1;Parent=Msa1021420;Name=Msa1021420-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.75|0.8|1|0.5|0.4|5|642|224 |
| chr7_1 | exon | 45759368 | 45759458 | 45759368 | ID=Msa1021420-mRNA-1:exon:9052;Parent=Msa1021420-mRNA-1 |
| chr7_1 | exon | 45759502 | 45759831 | 45759502 | ID=Msa1021420-mRNA-1:exon:9051;Parent=Msa1021420-mRNA-1 |
| chr7_1 | exon | 45759924 | 45760300 | 45759924 | ID=Msa1021420-mRNA-1:exon:9050;Parent=Msa1021420-mRNA-1 |
| chr7_1 | exon | 45760380 | 45760478 | 45760380 | ID=Msa1021420-mRNA-1:exon:9049;Parent=Msa1021420-mRNA-1 |
| chr7_1 | exon | 45761642 | 45762061 | 45761642 | ID=Msa1021420-mRNA-1:exon:9048;Parent=Msa1021420-mRNA-1 |
| chr7_1 | CDS | 45761642 | 45762061 | 45761642 | ID=Msa1021420-mRNA-1:cds;Parent=Msa1021420-mRNA-1 |
| chr7_1 | CDS | 45760380 | 45760478 | 45760380 | ID=Msa1021420-mRNA-1:cds;Parent=Msa1021420-mRNA-1 |
| chr7_1 | CDS | 45760145 | 45760300 | 45760145 | ID=Msa1021420-mRNA-1:cds;Parent=Msa1021420-mRNA-1 |
| chr7_1 | three_prime_UTR | 45759924 | 45760144 | 45759924 | ID=Msa1021420-mRNA-1:three_prime_utr;Parent=Msa1021420-mRNA-1 |
| chr7_1 | three_prime_UTR | 45759502 | 45759831 | 45759502 | ID=Msa1021420-mRNA-1:three_prime_utr;Parent=Msa1021420-mRNA-1 |
| chr7_1 | three_prime_UTR | 45759368 | 45759458 | 45759368 | ID=Msa1021420-mRNA-1:three_prime_utr;Parent=Msa1021420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
