Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023830 | KEH23114.1 | 62.698 | 126 | 41 | 2 | 2 | 127 | 155 | 274 | 1.83e-38 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023830 | A0A072U004 | 62.698 | 126 | 41 | 2 | 2 | 127 | 155 | 274 | 8.75e-39 | 145 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016570 | Msa1023830 | 0.802538 | 5.349060e-49 | -8.615850e-47 |
| Msa0064970 | Msa1023830 | 0.800878 | 1.172384e-48 | -8.615850e-47 |
| Msa0804210 | Msa1023830 | 0.804911 | 1.720966e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023830 | MtrunA17_Chr7g0241511 | 62.698 | 126 | 41 | 2 | 2 | 127 | 174 | 293 | 4.68e-42 | 144 |
| Msa1023830 | MtrunA17_Chr7g0241511 | 63.934 | 61 | 17 | 2 | 128 | 188 | 17 | 72 | 1.94e-13 | 67.4 |
| Msa1023830 | MtrunA17_Chr2g0292001 | 63.492 | 126 | 42 | 3 | 2 | 127 | 29 | 150 | 1.97e-41 | 139 |
| Msa1023830 | MtrunA17_Chr7g0237451 | 56.349 | 126 | 50 | 3 | 3 | 127 | 316 | 437 | 1.05e-34 | 127 |
| Msa1023830 | MtrunA17_Chr7g0237451 | 65.574 | 61 | 20 | 1 | 128 | 188 | 155 | 214 | 4.93e-17 | 78.2 |
| Msa1023830 | MtrunA17_Chr7g0241431 | 50.360 | 139 | 54 | 4 | 1 | 130 | 288 | 420 | 1.03e-31 | 119 |
| Msa1023830 | MtrunA17_Chr7g0241421 | 45.669 | 127 | 65 | 1 | 1 | 127 | 325 | 447 | 1.43e-23 | 97.1 |
| Msa1023830 | MtrunA17_Chr7g0241421 | 57.377 | 61 | 25 | 1 | 128 | 188 | 165 | 224 | 3.73e-13 | 67.0 |
| Msa1023830 | MtrunA17_Chr7g0218371 | 46.565 | 131 | 59 | 3 | 1 | 127 | 286 | 409 | 1.52e-20 | 88.2 |
| Msa1023830 | MtrunA17_Chr7g0241161 | 44.961 | 129 | 37 | 4 | 2 | 130 | 303 | 397 | 1.30e-18 | 82.4 |
| Msa1023830 | MtrunA17_Chr7g0241331 | 35.971 | 139 | 80 | 3 | 2 | 135 | 326 | 460 | 8.40e-15 | 71.6 |
| Msa1023830 | MtrunA17_Chr7g0241291 | 35.714 | 126 | 51 | 4 | 2 | 127 | 188 | 283 | 1.19e-13 | 67.8 |
| Msa1023830 | MtrunA17_Chr3g0110221 | 34.459 | 148 | 82 | 4 | 1 | 138 | 189 | 331 | 3.77e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATGATACCTCGTGATTT+TGG | 0.193051 | 7_1:+52005442 | Msa1023830:CDS |
| GTCATACTTGCTTGGATTCA+CGG | 0.366327 | 7_1:+52003100 | Msa1023830:CDS |
| CATAGGTCCGTTGATTTACA+TGG | 0.376695 | 7_1:+52003260 | Msa1023830:CDS |
| AATGTGTGTAACTTTAAATT+TGG | 0.383037 | 7_1:+52003188 | Msa1023830:CDS |
| TTATTATTGTCATACTTGCT+TGG | 0.407081 | 7_1:+52003092 | Msa1023830:CDS |
| ATAAACAGGTAAGTTAGCTT+TGG | 0.421133 | 7_1:-52003073 | None:intergenic |
| CAAGTATGACAATAATAAAC+AGG | 0.432319 | 7_1:-52003087 | None:intergenic |
| TCTTAAAGGTGAACTGTCAA+AGG | 0.457206 | 7_1:-52005690 | Msa1023840:intron |
| CTTAAAGGTGAACTGTCAAA+GGG | 0.464095 | 7_1:-52005689 | Msa1023840:intron |
| TGATATTCTCAAGTTGTCAA+TGG | 0.475919 | 7_1:+52005656 | Msa1023830:CDS |
| AGTTGTGGAGAATTTGTCAT+AGG | 0.484038 | 7_1:+52003243 | Msa1023830:CDS |
| ACACACATTTCACCAGAACT+AGG | 0.487924 | 7_1:-52003174 | None:intergenic |
| CACTAACATTGGTGCTATTG+TGG | 0.488349 | 7_1:+52005498 | Msa1023830:CDS |
| GGTAAGTTAGCTTTGGCGAT+GGG | 0.500925 | 7_1:-52003066 | None:intergenic |
| TAGTTCAAATGTTCCTATGT+TGG | 0.512314 | 7_1:+52003341 | Msa1023830:CDS |
| AATGGGTGTAGTACTAAGAG+TGG | 0.513643 | 7_1:-52003139 | None:intergenic |
| ATGATCAATGTTGCGGTGGT+GGG | 0.516744 | 7_1:-52005403 | Msa1023840:intron |
| AATGATCAATGTTGCGGTGG+TGG | 0.520339 | 7_1:-52005404 | Msa1023840:intron |
| AAATGTTCCTATGTTGGATG+TGG | 0.524555 | 7_1:+52003347 | Msa1023830:CDS |
| TCAAATTGTGCTGCAATGGT+AGG | 0.554233 | 7_1:-52003024 | None:intergenic |
| ATTACCTCCACATCCAACAT+AGG | 0.567883 | 7_1:-52003354 | None:intergenic |
| AAACTTGAAGTCACTAACAT+TGG | 0.568670 | 7_1:+52005487 | Msa1023830:CDS |
| AGGTAAGTTAGCTTTGGCGA+TGG | 0.569451 | 7_1:-52003067 | None:intergenic |
| TAGATGTGAAATAGCAGTGA+AGG | 0.576058 | 7_1:-52003316 | None:intergenic |
| TTACATGGTAACAGATGACT+TGG | 0.593082 | 7_1:+52003275 | Msa1023830:CDS |
| TGATCAATGTTGCGGTGGTG+GGG | 0.594075 | 7_1:-52005402 | Msa1023840:intron |
| GCTTCAACATCATCAAGTTG+TGG | 0.609223 | 7_1:+52003228 | Msa1023830:CDS |
| GATGTTGAAGCATAGTACTT+CGG | 0.614337 | 7_1:-52003216 | None:intergenic |
| TGTTCCTATGTTGGATGTGG+AGG | 0.616781 | 7_1:+52003350 | Msa1023830:CDS |
| GTCAGAAATGATCAATGTTG+CGG | 0.618018 | 7_1:-52005410 | Msa1023840:intron |
| ATGGGTGTAGTACTAAGAGT+GGG | 0.620275 | 7_1:-52003138 | None:intergenic |
| GAGCTCAAATTGTGCTGCAA+TGG | 0.620620 | 7_1:-52003028 | None:intergenic |
| TCTGTTACCATGTAAATCAA+CGG | 0.630403 | 7_1:-52003267 | None:intergenic |
| ATAGCAGTGAAGGATGACAT+TGG | 0.632785 | 7_1:-52003306 | None:intergenic |
| AGAAATGATCAATGTTGCGG+TGG | 0.692689 | 7_1:-52005407 | Msa1023840:intron |
| TTAAAGGTGAACTGTCAAAG+GGG | 0.705742 | 7_1:-52005688 | Msa1023840:intron |
| ACAACTGTTCCAAAATCACG+AGG | 0.713033 | 7_1:-52005451 | Msa1023840:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATCATAAAGTTAATCA+CGG | - | chr7_1:52003550-52003569 | None:intergenic | 15.0% |
| !!! | AAATTTTTCTTAAAAACGTT+GGG | + | chr7_1:52003588-52003607 | Msa1023830:intron | 15.0% |
| !!! | CAAAATTTTTAAATTTCCAT+CGG | + | chr7_1:52003624-52003643 | Msa1023830:intron | 15.0% |
| !!! | AAAATTTTTAAATTTCCATC+GGG | + | chr7_1:52003625-52003644 | Msa1023830:intron | 15.0% |
| !! | TATCTAATGTTAATCTATAT+TGG | + | chr7_1:52004961-52004980 | Msa1023830:intron | 15.0% |
| !!! | ACATACTAATTTTAATCATT+TGG | - | chr7_1:52005015-52005034 | None:intergenic | 15.0% |
| !!! | AAAGCATTTTCTATAAAATA+TGG | - | chr7_1:52005167-52005186 | None:intergenic | 15.0% |
| !!! | TTTTATAGAAAATGCTTTAA+TGG | + | chr7_1:52005169-52005188 | Msa1023830:intron | 15.0% |
| !! | TTAATGGTATAATTTGAAAA+AGG | + | chr7_1:52005185-52005204 | Msa1023830:intron | 15.0% |
| !!! | TCAATATTTTTAATATTTGC+AGG | + | chr7_1:52005629-52005648 | Msa1023830:intron | 15.0% |
| !! | AATGTGTGTAACTTTAAATT+TGG | + | chr7_1:52003188-52003207 | Msa1023830:CDS | 20.0% |
| !! | GTGATTAACTTTATGATATT+TGG | + | chr7_1:52003549-52003568 | Msa1023830:intron | 20.0% |
| !!! | CAAATTTTTCTTAAAAACGT+TGG | + | chr7_1:52003587-52003606 | Msa1023830:intron | 20.0% |
| !!! | AAATTTTTAAATTTCCATCG+GGG | + | chr7_1:52003626-52003645 | Msa1023830:intron | 20.0% |
| !!! | ATAGATTTACAAACCAATTT+TGG | - | chr7_1:52003723-52003742 | None:intergenic | 20.0% |
| !!! | ACAGAAGAAATATTTAGTTT+TGG | - | chr7_1:52003910-52003929 | None:intergenic | 20.0% |
| !!! | AGTTTGTTATAATCTGATTT+TGG | - | chr7_1:52004042-52004061 | None:intergenic | 20.0% |
| !! | ATAATATCAAACTACAACTT+AGG | - | chr7_1:52004263-52004282 | None:intergenic | 20.0% |
| !!! | CATTTTTCTTGTAAATAACT+TGG | - | chr7_1:52004498-52004517 | None:intergenic | 20.0% |
| !! | GTGAAAATAAATTAGAAGAA+AGG | + | chr7_1:52004522-52004541 | Msa1023830:intron | 20.0% |
| !!! | TTTCTACATTTTGAAAAAGA+TGG | - | chr7_1:52004836-52004855 | None:intergenic | 20.0% |
| !! | TCAAAATGTAGAAATTAGTT+AGG | + | chr7_1:52004842-52004861 | Msa1023830:intron | 20.0% |
| !! | CAAAATGTAGAAATTAGTTA+GGG | + | chr7_1:52004843-52004862 | Msa1023830:intron | 20.0% |
| !! | TTAATTATTAGAGGACATAA+TGG | - | chr7_1:52005128-52005147 | None:intergenic | 20.0% |
| !! | AAGTTAATGATATACATGAT+GGG | - | chr7_1:52005576-52005595 | Msa1023840:intron | 20.0% |
| !! | AAAGTTAATGATATACATGA+TGG | - | chr7_1:52005577-52005596 | Msa1023840:intron | 20.0% |
| ! | CAAGTATGACAATAATAAAC+AGG | - | chr7_1:52003090-52003109 | None:intergenic | 25.0% |
| ! | TTATTATTGTCATACTTGCT+TGG | + | chr7_1:52003092-52003111 | Msa1023830:CDS | 25.0% |
| ! | CTAGGAAAAACAATTTGAAT+GGG | - | chr7_1:52003159-52003178 | None:intergenic | 25.0% |
| ! | ACTAGGAAAAACAATTTGAA+TGG | - | chr7_1:52003160-52003179 | None:intergenic | 25.0% |
| ! | TTCAGATAGAACTGATATTT+GGG | - | chr7_1:52003672-52003691 | None:intergenic | 25.0% |
| !! | ATTTACAAACCAATTTTGGA+CGG | - | chr7_1:52003719-52003738 | None:intergenic | 25.0% |
| !!! | TGCCAAAATGATATTTTTAC+TGG | + | chr7_1:52003742-52003761 | Msa1023830:intron | 25.0% |
| !! | CACCAGTAAAAATATCATTT+TGG | - | chr7_1:52003747-52003766 | None:intergenic | 25.0% |
| ! | TGCTGATACATAAATGAATT+TGG | + | chr7_1:52003953-52003972 | Msa1023830:intron | 25.0% |
| !! | TAACATGCCATTTATAAGAT+TGG | + | chr7_1:52004106-52004125 | Msa1023830:intron | 25.0% |
| !! | GATACTAAGACAAATCTTTT+AGG | + | chr7_1:52004196-52004215 | Msa1023830:intron | 25.0% |
| ! | GATTGTTGTATTATATGACT+TGG | + | chr7_1:52004315-52004334 | Msa1023830:intron | 25.0% |
| ! | TGGTAATTCTCATAATCAAA+AGG | + | chr7_1:52004335-52004354 | Msa1023830:intron | 25.0% |
| !! | AATTAGTTAGGGATTGATTT+AGG | + | chr7_1:52004854-52004873 | Msa1023830:intron | 25.0% |
| !! | AGTAAAATCACTTTCTCTTT+TGG | + | chr7_1:52004886-52004905 | Msa1023830:intron | 25.0% |
| !! | TCTCTTTTGGTATCTAAATT+CGG | + | chr7_1:52004899-52004918 | Msa1023830:intron | 25.0% |
| !! | TAGTTTCTAGACTAAAGAAA+CGG | - | chr7_1:52005070-52005089 | None:intergenic | 25.0% |
| !!! | AAGAAAAATGTGTTACTTCA+AGG | - | chr7_1:52005098-52005117 | None:intergenic | 25.0% |
| ! | CTTGCTTCTTTAATTATTAG+AGG | - | chr7_1:52005137-52005156 | None:intergenic | 25.0% |
| ! | AATATTGAAGCAGTGAAATT+TGG | + | chr7_1:52005320-52005339 | Msa1023830:intron | 25.0% |
| ! | TTGATATCAGCAATAAAAAG+AGG | + | chr7_1:52005530-52005549 | Msa1023830:intron | 25.0% |
| ! | ATAAACAGGTAAGTTAGCTT+TGG | - | chr7_1:52003076-52003095 | None:intergenic | 30.0% |
| !! | CAAATTGTTTTTCCTAGTTC+TGG | + | chr7_1:52003162-52003181 | Msa1023830:CDS | 30.0% |
| TCTGTTACCATGTAAATCAA+CGG | - | chr7_1:52003270-52003289 | None:intergenic | 30.0% | |
| TAGTTCAAATGTTCCTATGT+TGG | + | chr7_1:52003341-52003360 | Msa1023830:CDS | 30.0% | |
| ! | GAACTCATTGTGATAATGTA+TGG | - | chr7_1:52003434-52003453 | None:intergenic | 30.0% |
| TCTTTGATTACATATGTTGC+AGG | + | chr7_1:52003452-52003471 | Msa1023830:intron | 30.0% | |
| CTTTGATTACATATGTTGCA+GGG | + | chr7_1:52003453-52003472 | Msa1023830:intron | 30.0% | |
| CTTCAGATAGAACTGATATT+TGG | - | chr7_1:52003673-52003692 | None:intergenic | 30.0% | |
| ! | TTTACAAACCAATTTTGGAC+GGG | - | chr7_1:52003718-52003737 | None:intergenic | 30.0% |
| ACATCCTTGAAAGTTTGAAA+GGG | - | chr7_1:52003881-52003900 | None:intergenic | 30.0% | |
| GACTAATTAACCACATTATG+CGG | - | chr7_1:52004014-52004033 | None:intergenic | 30.0% | |
| ACTGCAACCAATCTTATAAA+TGG | - | chr7_1:52004116-52004135 | None:intergenic | 30.0% | |
| TATTATGCTGCATGATACAA+GGG | - | chr7_1:52004165-52004184 | None:intergenic | 30.0% | |
| ATATTATGCTGCATGATACA+AGG | - | chr7_1:52004166-52004185 | None:intergenic | 30.0% | |
| !! | GTCATCTAACATTGTTTTAC+TGG | - | chr7_1:52004235-52004254 | None:intergenic | 30.0% |
| AAACAAAAAGTTGCTCATCT+TGG | + | chr7_1:52004449-52004468 | Msa1023830:intron | 30.0% | |
| AACAAAAAGTTGCTCATCTT+GGG | + | chr7_1:52004450-52004469 | Msa1023830:intron | 30.0% | |
| !! | TCTGTTATCGTTATTTTCGA+AGG | + | chr7_1:52004563-52004582 | Msa1023830:intron | 30.0% |
| !! | TTATCGTTATTTTCGAAGGA+TGG | + | chr7_1:52004567-52004586 | Msa1023830:intron | 30.0% |
| !!! | TGTGTCCCTGTTTTTTTTTT+TGG | + | chr7_1:52004599-52004618 | Msa1023830:intron | 30.0% |
| !!! | GTGTCCCTGTTTTTTTTTTT+GGG | + | chr7_1:52004600-52004619 | Msa1023830:intron | 30.0% |
| !!! | TGTCCCTGTTTTTTTTTTTG+GGG | + | chr7_1:52004601-52004620 | Msa1023830:intron | 30.0% |
| AGAATCTGAGTTCAATTGTT+AGG | - | chr7_1:52004687-52004706 | None:intergenic | 30.0% | |
| AAATGGACACTACATTTAGT+GGG | - | chr7_1:52005044-52005063 | None:intergenic | 30.0% | |
| AAAATGGACACTACATTTAG+TGG | - | chr7_1:52005045-52005064 | None:intergenic | 30.0% | |
| GACTAAAGAAACGGAAAAAA+TGG | - | chr7_1:52005061-52005080 | None:intergenic | 30.0% | |
| GTTCTGCAATTTCAATACTA+TGG | + | chr7_1:52005220-52005239 | Msa1023830:intron | 30.0% | |
| AACTGAATCTGTTAACAAGT+TGG | + | chr7_1:52005253-52005272 | Msa1023830:intron | 30.0% | |
| AAACTTGAAGTCACTAACAT+TGG | + | chr7_1:52005487-52005506 | Msa1023830:CDS | 30.0% | |
| ! | TGATATTCTCAAGTTGTCAA+TGG | + | chr7_1:52005656-52005675 | Msa1023830:CDS | 30.0% |
| GATGTTGAAGCATAGTACTT+CGG | - | chr7_1:52003219-52003238 | None:intergenic | 35.0% | |
| AGTTGTGGAGAATTTGTCAT+AGG | + | chr7_1:52003243-52003262 | Msa1023830:CDS | 35.0% | |
| TTACATGGTAACAGATGACT+TGG | + | chr7_1:52003275-52003294 | Msa1023830:CDS | 35.0% | |
| TAGATGTGAAATAGCAGTGA+AGG | - | chr7_1:52003319-52003338 | None:intergenic | 35.0% | |
| AAATGTTCCTATGTTGGATG+TGG | + | chr7_1:52003347-52003366 | Msa1023830:CDS | 35.0% | |
| AGATAGAACTGATATTTGGG+TGG | - | chr7_1:52003669-52003688 | None:intergenic | 35.0% | |
| ATTTGTAACCCGTCCAAAAT+TGG | + | chr7_1:52003707-52003726 | Msa1023830:intron | 35.0% | |
| !! | ACAATTCACAGTTTCTAGCA+AGG | + | chr7_1:52003768-52003787 | Msa1023830:intron | 35.0% |
| ! | CTAAATTGGTTTCTGATACG+AGG | - | chr7_1:52003829-52003848 | None:intergenic | 35.0% |
| AACTCCCTTTCAAACTTTCA+AGG | + | chr7_1:52003874-52003893 | Msa1023830:intron | 35.0% | |
| GACATCCTTGAAAGTTTGAA+AGG | - | chr7_1:52003882-52003901 | None:intergenic | 35.0% | |
| TTGCCAAATTCCCATAAATC+TGG | - | chr7_1:52004431-52004450 | None:intergenic | 35.0% | |
| !!! | GTCCCTGTTTTTTTTTTTGG+GGG | + | chr7_1:52004602-52004621 | Msa1023830:intron | 35.0% |
| TGTGTCAGAACTTGAAGTAA+TGG | + | chr7_1:52005367-52005386 | Msa1023830:intron | 35.0% | |
| GTGTCAGAACTTGAAGTAAT+GGG | + | chr7_1:52005368-52005387 | Msa1023830:intron | 35.0% | |
| GTCAGAAATGATCAATGTTG+CGG | - | chr7_1:52005413-52005432 | Msa1023840:intron | 35.0% | |
| ! | TCTATGATACCTCGTGATTT+TGG | + | chr7_1:52005442-52005461 | Msa1023830:CDS | 35.0% |
| GATGGGAGTTATATATAGAG+AGG | - | chr7_1:52005559-52005578 | Msa1023840:intron | 35.0% | |
| TTAAAGGTGAACTGTCAAAG+GGG | - | chr7_1:52005691-52005710 | Msa1023840:intron | 35.0% | |
| TCAAATTGTGCTGCAATGGT+AGG | - | chr7_1:52003027-52003046 | None:intergenic | 40.0% | |
| GTCATACTTGCTTGGATTCA+CGG | + | chr7_1:52003100-52003119 | Msa1023830:CDS | 40.0% | |
| ATGGGTGTAGTACTAAGAGT+GGG | - | chr7_1:52003141-52003160 | None:intergenic | 40.0% | |
| AATGGGTGTAGTACTAAGAG+TGG | - | chr7_1:52003142-52003161 | None:intergenic | 40.0% | |
| ACACACATTTCACCAGAACT+AGG | - | chr7_1:52003177-52003196 | None:intergenic | 40.0% | |
| ! | GCTTCAACATCATCAAGTTG+TGG | + | chr7_1:52003228-52003247 | Msa1023830:CDS | 40.0% |
| !! | CATAGGTCCGTTGATTTACA+TGG | + | chr7_1:52003260-52003279 | Msa1023830:CDS | 40.0% |
| ATAGCAGTGAAGGATGACAT+TGG | - | chr7_1:52003309-52003328 | None:intergenic | 40.0% | |
| ATTACCTCCACATCCAACAT+AGG | - | chr7_1:52003357-52003376 | None:intergenic | 40.0% | |
| TTACATATGTTGCAGGGTCT+CGG | + | chr7_1:52003459-52003478 | Msa1023830:intron | 40.0% | |
| !! | TTTCCATCGGGGTATTTTAC+CGG | + | chr7_1:52003637-52003656 | Msa1023830:intron | 40.0% |
| ! | AGTTCTATCTGAAGTTCGTG+CGG | + | chr7_1:52003679-52003698 | Msa1023830:intron | 40.0% |
| ! | AGTAACTTTTACAGCGAACG+TGG | - | chr7_1:52003803-52003822 | None:intergenic | 40.0% |
| GCACAATAGTCTGGCTAAAT+TGG | - | chr7_1:52003843-52003862 | None:intergenic | 40.0% | |
| AGTCTTGAAGCACAATAGTC+TGG | - | chr7_1:52003852-52003871 | None:intergenic | 40.0% | |
| CTCTAAATCACCGCATAATG+TGG | + | chr7_1:52004001-52004020 | Msa1023830:intron | 40.0% | |
| GCATGTTAATGATCTGCAGT+TGG | - | chr7_1:52004094-52004113 | None:intergenic | 40.0% | |
| AGAAAGCTACTACAGCCTTA+TGG | + | chr7_1:52004397-52004416 | Msa1023830:intron | 40.0% | |
| GCACCAGATTTATGGGAATT+TGG | + | chr7_1:52004425-52004444 | Msa1023830:intron | 40.0% | |
| GGCCCCCAAAAAAAAAAACA+GGG | - | chr7_1:52004607-52004626 | None:intergenic | 40.0% | |
| AACCGAACTCTGGATTACAA+GGG | - | chr7_1:52004628-52004647 | None:intergenic | 40.0% | |
| TAACCGAACTCTGGATTACA+AGG | - | chr7_1:52004629-52004648 | None:intergenic | 40.0% | |
| TTGTAATCCAGAGTTCGGTT+AGG | + | chr7_1:52004628-52004647 | Msa1023830:intron | 40.0% | |
| GTTAGGAGGTAAGTAAAGTG+TGG | + | chr7_1:52004645-52004664 | Msa1023830:intron | 40.0% | |
| CATTGCATATTAGAGAGCAG+AGG | + | chr7_1:52004985-52005004 | Msa1023830:intron | 40.0% | |
| ! | CTGTTAACAAGTTGGCAAAG+AGG | + | chr7_1:52005261-52005280 | Msa1023830:intron | 40.0% |
| TGCTTCAATATTTGACGTCG+TGG | - | chr7_1:52005312-52005331 | Msa1023840:CDS | 40.0% | |
| !! | AGAACTTGAAGTAATGGGCA+GGG | + | chr7_1:52005373-52005392 | Msa1023830:intron | 40.0% |
| AGAAATGATCAATGTTGCGG+TGG | - | chr7_1:52005410-52005429 | Msa1023840:intron | 40.0% | |
| ACAACTGTTCCAAAATCACG+AGG | - | chr7_1:52005454-52005473 | Msa1023840:intron | 40.0% | |
| !! | CACTAACATTGGTGCTATTG+TGG | + | chr7_1:52005498-52005517 | Msa1023830:CDS | 40.0% |
| GAGCTCAAATTGTGCTGCAA+TGG | - | chr7_1:52003031-52003050 | None:intergenic | 45.0% | |
| !! | GGTAAGTTAGCTTTGGCGAT+GGG | - | chr7_1:52003069-52003088 | None:intergenic | 45.0% |
| !! | AGGTAAGTTAGCTTTGGCGA+TGG | - | chr7_1:52003070-52003089 | None:intergenic | 45.0% |
| TGTTCCTATGTTGGATGTGG+AGG | + | chr7_1:52003350-52003369 | Msa1023830:CDS | 45.0% | |
| TTGCAGGGTCTCGGTATATT+TGG | + | chr7_1:52003468-52003487 | Msa1023830:intron | 45.0% | |
| !! | GATATTTGGGTGGACTACAC+CGG | - | chr7_1:52003659-52003678 | None:intergenic | 45.0% |
| ! | AAGCTACTACAGCCTTATGG+AGG | + | chr7_1:52004400-52004419 | Msa1023830:intron | 45.0% |
| ATCTTGGGAAGCTAGCTGTA+GGG | + | chr7_1:52004465-52004484 | Msa1023830:intron | 45.0% | |
| GGGCCCCCAAAAAAAAAAAC+AGG | - | chr7_1:52004608-52004627 | None:intergenic | 45.0% | |
| TAATCCAGAGTTCGGTTAGG+AGG | + | chr7_1:52004631-52004650 | Msa1023830:intron | 45.0% | |
| ! | GTGAGGGACTATTGCTATTG+TGG | + | chr7_1:52005286-52005305 | Msa1023830:intron | 45.0% |
| !! | CAGAACTTGAAGTAATGGGC+AGG | + | chr7_1:52005372-52005391 | Msa1023830:intron | 45.0% |
| ATGATCAATGTTGCGGTGGT+GGG | - | chr7_1:52005406-52005425 | Msa1023840:intron | 45.0% | |
| AATGATCAATGTTGCGGTGG+TGG | - | chr7_1:52005407-52005426 | Msa1023840:intron | 45.0% | |
| ACACCGGTAAAATACCCCGA+TGG | - | chr7_1:52003643-52003662 | None:intergenic | 50.0% | |
| GCTGCATGATACAAGGGTGA+GGG | - | chr7_1:52004159-52004178 | None:intergenic | 50.0% | |
| TGCTGCATGATACAAGGGTG+AGG | - | chr7_1:52004160-52004179 | None:intergenic | 50.0% | |
| !! | AATCTGGTGCTGCCTCCATA+AGG | - | chr7_1:52004415-52004434 | None:intergenic | 50.0% |
| TGGAGGCAGCACCAGATTTA+TGG | + | chr7_1:52004417-52004436 | Msa1023830:intron | 50.0% | |
| GGAGGCAGCACCAGATTTAT+GGG | + | chr7_1:52004418-52004437 | Msa1023830:intron | 50.0% | |
| CATCTTGGGAAGCTAGCTGT+AGG | + | chr7_1:52004464-52004483 | Msa1023830:intron | 50.0% | |
| GGAAGCTAGCTGTAGGGATT+AGG | + | chr7_1:52004471-52004490 | Msa1023830:intron | 50.0% | |
| GGCCCTTGTAATCCAGAGTT+CGG | + | chr7_1:52004623-52004642 | Msa1023830:intron | 50.0% | |
| CTTACCTCCTAACCGAACTC+TGG | - | chr7_1:52004638-52004657 | None:intergenic | 50.0% | |
| AAGTTGGCAAAGAGGCAGTG+AGG | + | chr7_1:52005269-52005288 | Msa1023830:intron | 50.0% | |
| AGTTGGCAAAGAGGCAGTGA+GGG | + | chr7_1:52005270-52005289 | Msa1023830:intron | 50.0% | |
| TGATCAATGTTGCGGTGGTG+GGG | - | chr7_1:52005405-52005424 | Msa1023840:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 52002991 | 52005710 | 52002991 | ID=Msa1023830;Name=Msa1023830 |
| chr7_1 | mRNA | 52002991 | 52005710 | 52002991 | ID=Msa1023830-mRNA-1;Parent=Msa1023830;Name=Msa1023830-mRNA-1;_AED=0.34;_eAED=0.36;_QI=0|0|0|1|1|1|3|0|191 |
| chr7_1 | exon | 52002991 | 52003371 | 52002991 | ID=Msa1023830-mRNA-1:exon:10256;Parent=Msa1023830-mRNA-1 |
| chr7_1 | exon | 52005394 | 52005528 | 52005394 | ID=Msa1023830-mRNA-1:exon:10257;Parent=Msa1023830-mRNA-1 |
| chr7_1 | exon | 52005651 | 52005710 | 52005651 | ID=Msa1023830-mRNA-1:exon:10258;Parent=Msa1023830-mRNA-1 |
| chr7_1 | CDS | 52002991 | 52003371 | 52002991 | ID=Msa1023830-mRNA-1:cds;Parent=Msa1023830-mRNA-1 |
| chr7_1 | CDS | 52005394 | 52005528 | 52005394 | ID=Msa1023830-mRNA-1:cds;Parent=Msa1023830-mRNA-1 |
| chr7_1 | CDS | 52005651 | 52005710 | 52005651 | ID=Msa1023830-mRNA-1:cds;Parent=Msa1023830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
