Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804210 | ABN08643.1 | 82.051 | 39 | 7 | 0 | 123 | 161 | 12 | 50 | 2.04e-12 | 70.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804210 | A2Q4T2 | 82.051 | 39 | 7 | 0 | 123 | 161 | 12 | 50 | 9.74e-13 | 70.1 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0678930 | Msa0804210 | 0.802316 | 5.944150e-49 | -8.615850e-47 |
| Msa0726140 | Msa0804210 | 0.802574 | 5.260629e-49 | -8.615850e-47 |
| Msa0745060 | Msa0804210 | 0.831105 | 2.015859e-55 | -8.615850e-47 |
| Msa0804210 | Msa0825860 | 0.825590 | 4.314367e-54 | -8.615850e-47 |
| Msa0804210 | Msa0846330 | 0.802103 | 6.575830e-49 | -8.615850e-47 |
| Msa0804210 | Msa0865320 | 0.807636 | 4.588691e-50 | -8.615850e-47 |
| Msa0804210 | Msa1023830 | 0.804911 | 1.720966e-49 | -8.615850e-47 |
| Msa0804210 | Msa1024240 | 0.818763 | 1.653960e-52 | -8.615850e-47 |
| Msa0804210 | Msa1025370 | 0.802522 | 5.390811e-49 | -8.615850e-47 |
| Msa0804210 | Msa1044830 | 0.803019 | 4.256917e-49 | -8.615850e-47 |
| Msa0804210 | Msa1092990 | 0.819406 | 1.181338e-52 | -8.615850e-47 |
| Msa0804210 | Msa1136090 | 0.806967 | 6.359984e-50 | -8.615850e-47 |
| Msa0804210 | Msa1146110 | 0.816745 | 4.720816e-52 | -8.615850e-47 |
| Msa0804210 | Msa1187940 | 0.823315 | 1.479856e-53 | -8.615850e-47 |
| Msa0804210 | Msa1269670 | 0.821838 | 3.264090e-53 | -8.615850e-47 |
| Msa0804210 | Msa1270230 | 0.803296 | 3.729974e-49 | -8.615850e-47 |
| Msa0804210 | Msa1270270 | 0.815509 | 8.913701e-52 | -8.615850e-47 |
| Msa0153910 | Msa0804210 | 0.805483 | 1.306355e-49 | -8.615850e-47 |
| Msa0452900 | Msa0804210 | 0.805848 | 1.095148e-49 | -8.615850e-47 |
| Msa0482620 | Msa0804210 | 0.900742 | 5.403767e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804210 | MtrunA17_Chr7g0258371 | 69.388 | 49 | 15 | 0 | 123 | 171 | 61 | 109 | 2.12e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATTAAGGGGAAATAAAT+TGG | 0.147850 | 5_3:-19823730 | None:intergenic |
| GGAGATTGAAGGTTCGAATT+TGG | 0.197636 | 5_3:-19823924 | None:intergenic |
| AATATGGTCTCAATTACTTT+AGG | 0.247950 | 5_3:+19824158 | Msa0804210:CDS |
| ACAATGAAAGGAAAGGTATA+TGG | 0.291279 | 5_3:-19823793 | None:intergenic |
| GAGAAGACGAAACGTTATTA+AGG | 0.301950 | 5_3:-19823743 | None:intergenic |
| GCTCCTTTCATGGGTGAATA+TGG | 0.303422 | 5_3:+19824142 | Msa0804210:CDS |
| GGTGGTGGCGATGAGGGATT+TGG | 0.318629 | 5_3:-19824019 | None:intergenic |
| ATATGGTCTCAATTACTTTA+GGG | 0.318736 | 5_3:+19824159 | Msa0804210:CDS |
| TTATGTTGTTATAGATTAAA+TGG | 0.332162 | 5_3:+19823679 | Msa0804210:intron |
| AAAATGGTACTTTAAGCAAA+AGG | 0.397214 | 5_3:-19824229 | None:intergenic |
| TCAAGAATTAGCTCCTTTCA+TGG | 0.400663 | 5_3:+19824132 | Msa0804210:CDS |
| TTGAGGGTTGAGGAGATTGA+AGG | 0.418718 | 5_3:-19823935 | None:intergenic |
| GAGAAGGAAAGATGGGAAGA+AGG | 0.428213 | 5_3:-19823976 | None:intergenic |
| GGTATTGGTGGTGGCGATGA+GGG | 0.440948 | 5_3:-19824025 | None:intergenic |
| GGGAAAAGAGAAGGAAAGAT+GGG | 0.442907 | 5_3:-19823983 | None:intergenic |
| AGGGAAAAGAGAAGGAAAGA+TGG | 0.447702 | 5_3:-19823984 | None:intergenic |
| AGCTCGGAGCATGTTGGTAT+TGG | 0.456019 | 5_3:-19824040 | None:intergenic |
| GATTGCTGTAGAGCGGAAGA+AGG | 0.462911 | 5_3:-19823766 | None:intergenic |
| GAAAGATGGGAAGAAGGAAA+AGG | 0.468185 | 5_3:-19823970 | None:intergenic |
| AGAAGACGAAACGTTATTAA+GGG | 0.490647 | 5_3:-19823742 | None:intergenic |
| AAAGATGGGAAGAAGGAAAA+GGG | 0.491078 | 5_3:-19823969 | None:intergenic |
| CAATGAAAGGAAAGGTATAT+GGG | 0.498306 | 5_3:-19823792 | None:intergenic |
| AAATGGTACTTTAAGCAAAA+GGG | 0.511374 | 5_3:-19824228 | None:intergenic |
| TCGGAGCATGTTGGTATTGG+TGG | 0.520054 | 5_3:-19824037 | None:intergenic |
| CAAGAATTAGCTCCTTTCAT+GGG | 0.527832 | 5_3:+19824133 | Msa0804210:CDS |
| GGTGGCGATGAGGGATTTGG+AGG | 0.530534 | 5_3:-19824016 | None:intergenic |
| TGGTATTGGTGGTGGCGATG+AGG | 0.536480 | 5_3:-19824026 | None:intergenic |
| ATTGAAGGTTCGAATTTGGA+TGG | 0.541085 | 5_3:-19823920 | None:intergenic |
| GATTTGGAGGTGAAGTGAGA+GGG | 0.543534 | 5_3:-19824003 | None:intergenic |
| CAAAGTCACCGGAGTAAGCT+CGG | 0.545918 | 5_3:-19824056 | None:intergenic |
| AAAGTAGAGTTCAAAGTCAC+CGG | 0.546122 | 5_3:-19824067 | None:intergenic |
| GGATTTGGAGGTGAAGTGAG+AGG | 0.547495 | 5_3:-19824004 | None:intergenic |
| TTACTTTAGGGTCATTGTTG+AGG | 0.550140 | 5_3:+19824171 | Msa0804210:CDS |
| ATTGCTGTAGAGCGGAAGAA+GGG | 0.550984 | 5_3:-19823765 | None:intergenic |
| GAAGAAGGAAAAGGGTGTGT+TGG | 0.559789 | 5_3:-19823961 | None:intergenic |
| TTGTTGTCCACTGCCGTATG+TGG | 0.563716 | 5_3:+19823812 | Msa0804210:CDS |
| AGGGAATCAATCACCACATA+CGG | 0.568898 | 5_3:-19823825 | None:intergenic |
| GAAGTGAGAGGGAAAAGAGA+AGG | 0.569318 | 5_3:-19823992 | None:intergenic |
| AACATGCTCCGAGCTTACTC+CGG | 0.588128 | 5_3:+19824048 | Msa0804210:CDS |
| AGACCATATTCACCCATGAA+AGG | 0.593937 | 5_3:-19824145 | None:intergenic |
| GAGCATGTTGGTATTGGTGG+TGG | 0.594668 | 5_3:-19824034 | None:intergenic |
| GAACTTCAAAACCTCACTCA+TGG | 0.596328 | 5_3:+19823885 | Msa0804210:CDS |
| CGGCAGTGGACAACAATGAA+AGG | 0.596386 | 5_3:-19823805 | None:intergenic |
| TCAATCACCACATACGGCAG+TGG | 0.601846 | 5_3:-19823819 | None:intergenic |
| GGAGTAAGCTCGGAGCATGT+TGG | 0.624220 | 5_3:-19824046 | None:intergenic |
| GTGGACAACAATGAAAGGAA+AGG | 0.637855 | 5_3:-19823800 | None:intergenic |
| GAAGACGAAACGTTATTAAG+GGG | 0.657822 | 5_3:-19823741 | None:intergenic |
| GTTAGAGAGTGCCATGAGTG+AGG | 0.659116 | 5_3:-19823896 | None:intergenic |
| TGGGTGAGATTGCTGTAGAG+CGG | 0.684110 | 5_3:-19823773 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAGGAAAAAACTATA+GGG | - | chr5_3:19823099-19823118 | None:intergenic | 15.0% |
| !! | AAAAATTAGGAAAAAACTAT+AGG | - | chr5_3:19823100-19823119 | None:intergenic | 15.0% |
| !! | AATATTAATTGAGTGAATTA+GGG | + | chr5_3:19823495-19823514 | Msa0804210:intron | 15.0% |
| !! | TTATGTTGTTATAGATTAAA+TGG | + | chr5_3:19823679-19823698 | Msa0804210:intron | 15.0% |
| !! | AAGATGAGAAAATAAAAAAA+AGG | - | chr5_3:19824201-19824220 | None:intergenic | 15.0% |
| !! | AAAATTAGGAAAAAACTATA+GGG | - | chr5_3:19823099-19823118 | None:intergenic | 15.0% |
| !! | AAAAATTAGGAAAAAACTAT+AGG | - | chr5_3:19823100-19823119 | None:intergenic | 15.0% |
| !! | AATATTAATTGAGTGAATTA+GGG | + | chr5_3:19823495-19823514 | Msa0804210:intron | 15.0% |
| !! | TTATGTTGTTATAGATTAAA+TGG | + | chr5_3:19823679-19823698 | Msa0804210:intron | 15.0% |
| !! | AAGATGAGAAAATAAAAAAA+AGG | - | chr5_3:19824201-19824220 | None:intergenic | 15.0% |
| !!! | AAAAGGGTATCAAAAAAATT+AGG | - | chr5_3:19823113-19823132 | None:intergenic | 20.0% |
| !! | GTTATGTTTGTGTTTATATA+TGG | + | chr5_3:19823289-19823308 | Msa0804210:intron | 20.0% |
| !! | ACCGAAGAAAAATAAATAAT+GGG | - | chr5_3:19823347-19823366 | None:intergenic | 20.0% |
| !! | AACCGAAGAAAAATAAATAA+TGG | - | chr5_3:19823348-19823367 | None:intergenic | 20.0% |
| !!! | TATTTATTTTTCTTCGGTTT+TGG | + | chr5_3:19823349-19823368 | Msa0804210:intron | 20.0% |
| !! | GAATATTAATTGAGTGAATT+AGG | + | chr5_3:19823494-19823513 | Msa0804210:intron | 20.0% |
| !! | TATATATAGACACATAAATG+TGG | - | chr5_3:19823581-19823600 | None:intergenic | 20.0% |
| !! | AATTCAAAATCTGTTGAATA+TGG | - | chr5_3:19823606-19823625 | None:intergenic | 20.0% |
| !! | AAAAGAGTTCTTTAAACAAA+CGG | - | chr5_3:19823630-19823649 | None:intergenic | 20.0% |
| !! | TATACTTCAAGAACTATTAA+GGG | - | chr5_3:19823847-19823866 | None:intergenic | 20.0% |
| !!! | AAAAGGGTATCAAAAAAATT+AGG | - | chr5_3:19823113-19823132 | None:intergenic | 20.0% |
| !! | GTTATGTTTGTGTTTATATA+TGG | + | chr5_3:19823289-19823308 | Msa0804210:intron | 20.0% |
| !! | ACCGAAGAAAAATAAATAAT+GGG | - | chr5_3:19823347-19823366 | None:intergenic | 20.0% |
| !! | AACCGAAGAAAAATAAATAA+TGG | - | chr5_3:19823348-19823367 | None:intergenic | 20.0% |
| !!! | TATTTATTTTTCTTCGGTTT+TGG | + | chr5_3:19823349-19823368 | Msa0804210:intron | 20.0% |
| !! | GAATATTAATTGAGTGAATT+AGG | + | chr5_3:19823494-19823513 | Msa0804210:intron | 20.0% |
| !! | TATATATAGACACATAAATG+TGG | - | chr5_3:19823581-19823600 | None:intergenic | 20.0% |
| !! | AATTCAAAATCTGTTGAATA+TGG | - | chr5_3:19823606-19823625 | None:intergenic | 20.0% |
| !! | AAAAGAGTTCTTTAAACAAA+CGG | - | chr5_3:19823630-19823649 | None:intergenic | 20.0% |
| !! | TATACTTCAAGAACTATTAA+GGG | - | chr5_3:19823847-19823866 | None:intergenic | 20.0% |
| ! | TGTATGAACTCAATTACTAT+AGG | + | chr5_3:19823058-19823077 | Msa0804210:intron | 25.0% |
| ! | GTATGAACTCAATTACTATA+GGG | + | chr5_3:19823059-19823078 | Msa0804210:intron | 25.0% |
| ! | AAACAACTCTTTAAGCAAAA+GGG | - | chr5_3:19823129-19823148 | None:intergenic | 25.0% |
| ! | AAAACAACTCTTTAAGCAAA+AGG | - | chr5_3:19823130-19823149 | None:intergenic | 25.0% |
| ! | TGTATTGAGTGAATTGTTAT+AGG | + | chr5_3:19823182-19823201 | Msa0804210:intron | 25.0% |
| ! | GTATTGAGTGAATTGTTATA+GGG | + | chr5_3:19823183-19823202 | Msa0804210:intron | 25.0% |
| ! | AAAATCGAAGAACAAACAAT+GGG | - | chr5_3:19823224-19823243 | None:intergenic | 25.0% |
| ! | AAAAATCGAAGAACAAACAA+TGG | - | chr5_3:19823225-19823244 | None:intergenic | 25.0% |
| ! | AAAGAGTTCTTTAAGCAAAA+TGG | - | chr5_3:19823254-19823273 | None:intergenic | 25.0% |
| ! | TATATGGACTCAATTACTAT+AGG | + | chr5_3:19823305-19823324 | Msa0804210:intron | 25.0% |
| ! | ATATGGACTCAATTACTATA+GGG | + | chr5_3:19823306-19823325 | Msa0804210:intron | 25.0% |
| ! | CCGAAGAAAAATAAATAATG+GGG | - | chr5_3:19823346-19823365 | None:intergenic | 25.0% |
| !!! | CCCCATTATTTATTTTTCTT+CGG | + | chr5_3:19823343-19823362 | Msa0804210:intron | 25.0% |
| ! | ATAACATAAATCGCAAACAA+TGG | + | chr5_3:19823400-19823419 | Msa0804210:intron | 25.0% |
| ! | TAGCCATATATACAGTATTA+CGG | + | chr5_3:19823531-19823550 | Msa0804210:intron | 25.0% |
| ! | AAAGAGTTCTTTAAACAAAC+GGG | - | chr5_3:19823629-19823648 | None:intergenic | 25.0% |
| ! | GTTATTAAGGGGAAATAAAT+TGG | - | chr5_3:19823733-19823752 | None:intergenic | 25.0% |
| ! | CTATACTTCAAGAACTATTA+AGG | - | chr5_3:19823848-19823867 | None:intergenic | 25.0% |
| ! | AATATGGTCTCAATTACTTT+AGG | + | chr5_3:19824158-19824177 | Msa0804210:CDS | 25.0% |
| ! | ATATGGTCTCAATTACTTTA+GGG | + | chr5_3:19824159-19824178 | Msa0804210:CDS | 25.0% |
| ! | TGTATGAACTCAATTACTAT+AGG | + | chr5_3:19823058-19823077 | Msa0804210:intron | 25.0% |
| ! | GTATGAACTCAATTACTATA+GGG | + | chr5_3:19823059-19823078 | Msa0804210:intron | 25.0% |
| ! | AAACAACTCTTTAAGCAAAA+GGG | - | chr5_3:19823129-19823148 | None:intergenic | 25.0% |
| ! | AAAACAACTCTTTAAGCAAA+AGG | - | chr5_3:19823130-19823149 | None:intergenic | 25.0% |
| ! | TGTATTGAGTGAATTGTTAT+AGG | + | chr5_3:19823182-19823201 | Msa0804210:intron | 25.0% |
| ! | GTATTGAGTGAATTGTTATA+GGG | + | chr5_3:19823183-19823202 | Msa0804210:intron | 25.0% |
| ! | AAAATCGAAGAACAAACAAT+GGG | - | chr5_3:19823224-19823243 | None:intergenic | 25.0% |
| ! | AAAAATCGAAGAACAAACAA+TGG | - | chr5_3:19823225-19823244 | None:intergenic | 25.0% |
| ! | AAAGAGTTCTTTAAGCAAAA+TGG | - | chr5_3:19823254-19823273 | None:intergenic | 25.0% |
| ! | TATATGGACTCAATTACTAT+AGG | + | chr5_3:19823305-19823324 | Msa0804210:intron | 25.0% |
| ! | ATATGGACTCAATTACTATA+GGG | + | chr5_3:19823306-19823325 | Msa0804210:intron | 25.0% |
| ! | CCGAAGAAAAATAAATAATG+GGG | - | chr5_3:19823346-19823365 | None:intergenic | 25.0% |
| !!! | CCCCATTATTTATTTTTCTT+CGG | + | chr5_3:19823343-19823362 | Msa0804210:intron | 25.0% |
| ! | ATAACATAAATCGCAAACAA+TGG | + | chr5_3:19823400-19823419 | Msa0804210:intron | 25.0% |
| ! | TAGCCATATATACAGTATTA+CGG | + | chr5_3:19823531-19823550 | Msa0804210:intron | 25.0% |
| ! | AAAGAGTTCTTTAAACAAAC+GGG | - | chr5_3:19823629-19823648 | None:intergenic | 25.0% |
| ! | GTTATTAAGGGGAAATAAAT+TGG | - | chr5_3:19823733-19823752 | None:intergenic | 25.0% |
| ! | CTATACTTCAAGAACTATTA+AGG | - | chr5_3:19823848-19823867 | None:intergenic | 25.0% |
| ! | AATATGGTCTCAATTACTTT+AGG | + | chr5_3:19824158-19824177 | Msa0804210:CDS | 25.0% |
| ! | ATATGGTCTCAATTACTTTA+GGG | + | chr5_3:19824159-19824178 | Msa0804210:CDS | 25.0% |
| AAATCGAAGAACAAACAATG+GGG | - | chr5_3:19823223-19823242 | None:intergenic | 30.0% | |
| GATCGTTTGTTTATCCAATT+CGG | + | chr5_3:19823428-19823447 | Msa0804210:intron | 30.0% | |
| AGAAGACGAAACGTTATTAA+GGG | - | chr5_3:19823745-19823764 | None:intergenic | 30.0% | |
| ! | CAATGAAAGGAAAGGTATAT+GGG | - | chr5_3:19823795-19823814 | None:intergenic | 30.0% |
| ! | ACAATGAAAGGAAAGGTATA+TGG | - | chr5_3:19823796-19823815 | None:intergenic | 30.0% |
| ! | CTTGAACTTTTTGACGATAA+CGG | - | chr5_3:19824117-19824136 | None:intergenic | 30.0% |
| AAATCGAAGAACAAACAATG+GGG | - | chr5_3:19823223-19823242 | None:intergenic | 30.0% | |
| GATCGTTTGTTTATCCAATT+CGG | + | chr5_3:19823428-19823447 | Msa0804210:intron | 30.0% | |
| AGAAGACGAAACGTTATTAA+GGG | - | chr5_3:19823745-19823764 | None:intergenic | 30.0% | |
| ! | CAATGAAAGGAAAGGTATAT+GGG | - | chr5_3:19823795-19823814 | None:intergenic | 30.0% |
| ! | ACAATGAAAGGAAAGGTATA+TGG | - | chr5_3:19823796-19823815 | None:intergenic | 30.0% |
| ! | CTTGAACTTTTTGACGATAA+CGG | - | chr5_3:19824117-19824136 | None:intergenic | 30.0% |
| TTGTTATAGGGTCATTGTTG+AGG | + | chr5_3:19823195-19823214 | Msa0804210:intron | 35.0% | |
| TTACTATAGGGTCATTGTTG+AGG | + | chr5_3:19823318-19823337 | Msa0804210:intron | 35.0% | |
| GGACCGTAATACTGTATATA+TGG | - | chr5_3:19823537-19823556 | None:intergenic | 35.0% | |
| GAAGACGAAACGTTATTAAG+GGG | - | chr5_3:19823744-19823763 | None:intergenic | 35.0% | |
| GAGAAGACGAAACGTTATTA+AGG | - | chr5_3:19823746-19823765 | None:intergenic | 35.0% | |
| !!! | ATGAGTGAGGTTTTGAAGTT+CGG | - | chr5_3:19823886-19823905 | None:intergenic | 35.0% |
| ATTGAAGGTTCGAATTTGGA+TGG | - | chr5_3:19823923-19823942 | None:intergenic | 35.0% | |
| AAAGATGGGAAGAAGGAAAA+GGG | - | chr5_3:19823972-19823991 | None:intergenic | 35.0% | |
| AAAGTAGAGTTCAAAGTCAC+CGG | - | chr5_3:19824070-19824089 | None:intergenic | 35.0% | |
| TCAAGAATTAGCTCCTTTCA+TGG | + | chr5_3:19824132-19824151 | Msa0804210:CDS | 35.0% | |
| CAAGAATTAGCTCCTTTCAT+GGG | + | chr5_3:19824133-19824152 | Msa0804210:CDS | 35.0% | |
| !! | TTACTTTAGGGTCATTGTTG+AGG | + | chr5_3:19824171-19824190 | Msa0804210:CDS | 35.0% |
| TTGTTATAGGGTCATTGTTG+AGG | + | chr5_3:19823195-19823214 | Msa0804210:intron | 35.0% | |
| TTACTATAGGGTCATTGTTG+AGG | + | chr5_3:19823318-19823337 | Msa0804210:intron | 35.0% | |
| GGACCGTAATACTGTATATA+TGG | - | chr5_3:19823537-19823556 | None:intergenic | 35.0% | |
| GAAGACGAAACGTTATTAAG+GGG | - | chr5_3:19823744-19823763 | None:intergenic | 35.0% | |
| GAGAAGACGAAACGTTATTA+AGG | - | chr5_3:19823746-19823765 | None:intergenic | 35.0% | |
| !!! | ATGAGTGAGGTTTTGAAGTT+CGG | - | chr5_3:19823886-19823905 | None:intergenic | 35.0% |
| ATTGAAGGTTCGAATTTGGA+TGG | - | chr5_3:19823923-19823942 | None:intergenic | 35.0% | |
| AAAGATGGGAAGAAGGAAAA+GGG | - | chr5_3:19823972-19823991 | None:intergenic | 35.0% | |
| AAAGTAGAGTTCAAAGTCAC+CGG | - | chr5_3:19824070-19824089 | None:intergenic | 35.0% | |
| TCAAGAATTAGCTCCTTTCA+TGG | + | chr5_3:19824132-19824151 | Msa0804210:CDS | 35.0% | |
| CAAGAATTAGCTCCTTTCAT+GGG | + | chr5_3:19824133-19824152 | Msa0804210:CDS | 35.0% | |
| !! | TTACTTTAGGGTCATTGTTG+AGG | + | chr5_3:19824171-19824190 | Msa0804210:CDS | 35.0% |
| TTACTATAGGGTCATTGCTG+AGG | + | chr5_3:19823071-19823090 | Msa0804210:intron | 40.0% | |
| CGAGGGATATTGTTATAGTC+TGG | - | chr5_3:19823558-19823577 | None:intergenic | 40.0% | |
| TAGACACATAAATGTGGCGA+GGG | - | chr5_3:19823575-19823594 | None:intergenic | 40.0% | |
| ATAGACACATAAATGTGGCG+AGG | - | chr5_3:19823576-19823595 | None:intergenic | 40.0% | |
| GTGGACAACAATGAAAGGAA+AGG | - | chr5_3:19823803-19823822 | None:intergenic | 40.0% | |
| AGGGAATCAATCACCACATA+CGG | - | chr5_3:19823828-19823847 | None:intergenic | 40.0% | |
| GAACTTCAAAACCTCACTCA+TGG | + | chr5_3:19823885-19823904 | Msa0804210:CDS | 40.0% | |
| GGAGATTGAAGGTTCGAATT+TGG | - | chr5_3:19823927-19823946 | None:intergenic | 40.0% | |
| !!! | AAGGGTGTGTTGGTTTTTGA+GGG | - | chr5_3:19823954-19823973 | None:intergenic | 40.0% |
| !!! | AAAGGGTGTGTTGGTTTTTG+AGG | - | chr5_3:19823955-19823974 | None:intergenic | 40.0% |
| GAAAGATGGGAAGAAGGAAA+AGG | - | chr5_3:19823973-19823992 | None:intergenic | 40.0% | |
| GGGAAAAGAGAAGGAAAGAT+GGG | - | chr5_3:19823986-19824005 | None:intergenic | 40.0% | |
| AGGGAAAAGAGAAGGAAAGA+TGG | - | chr5_3:19823987-19824006 | None:intergenic | 40.0% | |
| AGACCATATTCACCCATGAA+AGG | - | chr5_3:19824148-19824167 | None:intergenic | 40.0% | |
| TTACTATAGGGTCATTGCTG+AGG | + | chr5_3:19823071-19823090 | Msa0804210:intron | 40.0% | |
| CGAGGGATATTGTTATAGTC+TGG | - | chr5_3:19823558-19823577 | None:intergenic | 40.0% | |
| TAGACACATAAATGTGGCGA+GGG | - | chr5_3:19823575-19823594 | None:intergenic | 40.0% | |
| ATAGACACATAAATGTGGCG+AGG | - | chr5_3:19823576-19823595 | None:intergenic | 40.0% | |
| GTGGACAACAATGAAAGGAA+AGG | - | chr5_3:19823803-19823822 | None:intergenic | 40.0% | |
| AGGGAATCAATCACCACATA+CGG | - | chr5_3:19823828-19823847 | None:intergenic | 40.0% | |
| GAACTTCAAAACCTCACTCA+TGG | + | chr5_3:19823885-19823904 | Msa0804210:CDS | 40.0% | |
| GGAGATTGAAGGTTCGAATT+TGG | - | chr5_3:19823927-19823946 | None:intergenic | 40.0% | |
| !!! | AAGGGTGTGTTGGTTTTTGA+GGG | - | chr5_3:19823954-19823973 | None:intergenic | 40.0% |
| !!! | AAAGGGTGTGTTGGTTTTTG+AGG | - | chr5_3:19823955-19823974 | None:intergenic | 40.0% |
| GAAAGATGGGAAGAAGGAAA+AGG | - | chr5_3:19823973-19823992 | None:intergenic | 40.0% | |
| GGGAAAAGAGAAGGAAAGAT+GGG | - | chr5_3:19823986-19824005 | None:intergenic | 40.0% | |
| AGGGAAAAGAGAAGGAAAGA+TGG | - | chr5_3:19823987-19824006 | None:intergenic | 40.0% | |
| AGACCATATTCACCCATGAA+AGG | - | chr5_3:19824148-19824167 | None:intergenic | 40.0% | |
| GTAGGCACAATTGACCGAAT+TGG | - | chr5_3:19823445-19823464 | None:intergenic | 45.0% | |
| TACTCTATAGTCGCAGAGGT+AGG | - | chr5_3:19823463-19823482 | None:intergenic | 45.0% | |
| TAGCTACTCTATAGTCGCAG+AGG | - | chr5_3:19823467-19823486 | None:intergenic | 45.0% | |
| ATTGCTGTAGAGCGGAAGAA+GGG | - | chr5_3:19823768-19823787 | None:intergenic | 45.0% | |
| TTGAGGGTTGAGGAGATTGA+AGG | - | chr5_3:19823938-19823957 | None:intergenic | 45.0% | |
| !!! | GTGTTGGTTTTTGAGGGTTG+AGG | - | chr5_3:19823948-19823967 | None:intergenic | 45.0% |
| ! | GAAGAAGGAAAAGGGTGTGT+TGG | - | chr5_3:19823964-19823983 | None:intergenic | 45.0% |
| GAGAAGGAAAGATGGGAAGA+AGG | - | chr5_3:19823979-19823998 | None:intergenic | 45.0% | |
| GAAGTGAGAGGGAAAAGAGA+AGG | - | chr5_3:19823995-19824014 | None:intergenic | 45.0% | |
| GATTTGGAGGTGAAGTGAGA+GGG | - | chr5_3:19824006-19824025 | None:intergenic | 45.0% | |
| GCTCCTTTCATGGGTGAATA+TGG | + | chr5_3:19824142-19824161 | Msa0804210:CDS | 45.0% | |
| GTAGGCACAATTGACCGAAT+TGG | - | chr5_3:19823445-19823464 | None:intergenic | 45.0% | |
| TACTCTATAGTCGCAGAGGT+AGG | - | chr5_3:19823463-19823482 | None:intergenic | 45.0% | |
| TAGCTACTCTATAGTCGCAG+AGG | - | chr5_3:19823467-19823486 | None:intergenic | 45.0% | |
| ATTGCTGTAGAGCGGAAGAA+GGG | - | chr5_3:19823768-19823787 | None:intergenic | 45.0% | |
| TTGAGGGTTGAGGAGATTGA+AGG | - | chr5_3:19823938-19823957 | None:intergenic | 45.0% | |
| !!! | GTGTTGGTTTTTGAGGGTTG+AGG | - | chr5_3:19823948-19823967 | None:intergenic | 45.0% |
| ! | GAAGAAGGAAAAGGGTGTGT+TGG | - | chr5_3:19823964-19823983 | None:intergenic | 45.0% |
| GAGAAGGAAAGATGGGAAGA+AGG | - | chr5_3:19823979-19823998 | None:intergenic | 45.0% | |
| GAAGTGAGAGGGAAAAGAGA+AGG | - | chr5_3:19823995-19824014 | None:intergenic | 45.0% | |
| GATTTGGAGGTGAAGTGAGA+GGG | - | chr5_3:19824006-19824025 | None:intergenic | 45.0% | |
| GCTCCTTTCATGGGTGAATA+TGG | + | chr5_3:19824142-19824161 | Msa0804210:CDS | 45.0% | |
| GATTGCTGTAGAGCGGAAGA+AGG | - | chr5_3:19823769-19823788 | None:intergenic | 50.0% | |
| TGGGTGAGATTGCTGTAGAG+CGG | - | chr5_3:19823776-19823795 | None:intergenic | 50.0% | |
| CGGCAGTGGACAACAATGAA+AGG | - | chr5_3:19823808-19823827 | None:intergenic | 50.0% | |
| TTGTTGTCCACTGCCGTATG+TGG | + | chr5_3:19823812-19823831 | Msa0804210:CDS | 50.0% | |
| TCAATCACCACATACGGCAG+TGG | - | chr5_3:19823822-19823841 | None:intergenic | 50.0% | |
| !! | GTTAGAGAGTGCCATGAGTG+AGG | - | chr5_3:19823899-19823918 | None:intergenic | 50.0% |
| GGATTTGGAGGTGAAGTGAG+AGG | - | chr5_3:19824007-19824026 | None:intergenic | 50.0% | |
| !! | GAGCATGTTGGTATTGGTGG+TGG | - | chr5_3:19824037-19824056 | None:intergenic | 50.0% |
| ! | TCGGAGCATGTTGGTATTGG+TGG | - | chr5_3:19824040-19824059 | None:intergenic | 50.0% |
| AGCTCGGAGCATGTTGGTAT+TGG | - | chr5_3:19824043-19824062 | None:intergenic | 50.0% | |
| AACATGCTCCGAGCTTACTC+CGG | + | chr5_3:19824048-19824067 | Msa0804210:CDS | 50.0% | |
| CAAAGTCACCGGAGTAAGCT+CGG | - | chr5_3:19824059-19824078 | None:intergenic | 50.0% | |
| GATTGCTGTAGAGCGGAAGA+AGG | - | chr5_3:19823769-19823788 | None:intergenic | 50.0% | |
| TGGGTGAGATTGCTGTAGAG+CGG | - | chr5_3:19823776-19823795 | None:intergenic | 50.0% | |
| CGGCAGTGGACAACAATGAA+AGG | - | chr5_3:19823808-19823827 | None:intergenic | 50.0% | |
| TTGTTGTCCACTGCCGTATG+TGG | + | chr5_3:19823812-19823831 | Msa0804210:CDS | 50.0% | |
| TCAATCACCACATACGGCAG+TGG | - | chr5_3:19823822-19823841 | None:intergenic | 50.0% | |
| !! | GTTAGAGAGTGCCATGAGTG+AGG | - | chr5_3:19823899-19823918 | None:intergenic | 50.0% |
| GGATTTGGAGGTGAAGTGAG+AGG | - | chr5_3:19824007-19824026 | None:intergenic | 50.0% | |
| !! | GAGCATGTTGGTATTGGTGG+TGG | - | chr5_3:19824037-19824056 | None:intergenic | 50.0% |
| ! | TCGGAGCATGTTGGTATTGG+TGG | - | chr5_3:19824040-19824059 | None:intergenic | 50.0% |
| AGCTCGGAGCATGTTGGTAT+TGG | - | chr5_3:19824043-19824062 | None:intergenic | 50.0% | |
| AACATGCTCCGAGCTTACTC+CGG | + | chr5_3:19824048-19824067 | Msa0804210:CDS | 50.0% | |
| CAAAGTCACCGGAGTAAGCT+CGG | - | chr5_3:19824059-19824078 | None:intergenic | 50.0% | |
| !! | GGTATTGGTGGTGGCGATGA+GGG | - | chr5_3:19824028-19824047 | None:intergenic | 55.0% |
| !! | TGGTATTGGTGGTGGCGATG+AGG | - | chr5_3:19824029-19824048 | None:intergenic | 55.0% |
| GGAGTAAGCTCGGAGCATGT+TGG | - | chr5_3:19824049-19824068 | None:intergenic | 55.0% | |
| !! | GGTATTGGTGGTGGCGATGA+GGG | - | chr5_3:19824028-19824047 | None:intergenic | 55.0% |
| !! | TGGTATTGGTGGTGGCGATG+AGG | - | chr5_3:19824029-19824048 | None:intergenic | 55.0% |
| GGAGTAAGCTCGGAGCATGT+TGG | - | chr5_3:19824049-19824068 | None:intergenic | 55.0% | |
| GGTGGCGATGAGGGATTTGG+AGG | - | chr5_3:19824019-19824038 | None:intergenic | 60.0% | |
| ! | GGTGGTGGCGATGAGGGATT+TGG | - | chr5_3:19824022-19824041 | None:intergenic | 60.0% |
| GGTGGCGATGAGGGATTTGG+AGG | - | chr5_3:19824019-19824038 | None:intergenic | 60.0% | |
| ! | GGTGGTGGCGATGAGGGATT+TGG | - | chr5_3:19824022-19824041 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 19823047 | 19824240 | 19823047 | ID=Msa0804210;Name=Msa0804210 |
| chr5_3 | mRNA | 19823047 | 19824240 | 19823047 | ID=Msa0804210-mRNA-1;Parent=Msa0804210;Name=Msa0804210-mRNA-1;_AED=0.63;_eAED=0.83;_QI=0|0|0|0.33|0|0|3|0|174 |
| chr5_3 | exon | 19823047 | 19823052 | 19823047 | ID=Msa0804210-mRNA-1:exon:8132;Parent=Msa0804210-mRNA-1 |
| chr5_3 | exon | 19823693 | 19823833 | 19823693 | ID=Msa0804210-mRNA-1:exon:8133;Parent=Msa0804210-mRNA-1 |
| chr5_3 | exon | 19823863 | 19824240 | 19823863 | ID=Msa0804210-mRNA-1:exon:8134;Parent=Msa0804210-mRNA-1 |
| chr5_3 | CDS | 19823047 | 19823052 | 19823047 | ID=Msa0804210-mRNA-1:cds;Parent=Msa0804210-mRNA-1 |
| chr5_3 | CDS | 19823693 | 19823833 | 19823693 | ID=Msa0804210-mRNA-1:cds;Parent=Msa0804210-mRNA-1 |
| chr5_3 | CDS | 19823863 | 19824240 | 19823863 | ID=Msa0804210-mRNA-1:cds;Parent=Msa0804210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
