Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025070 | XP_003623331.2 | 75.107 | 233 | 7 | 2 | 1 | 184 | 122 | 352 | 4.51e-99 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025070 | G7KSC8 | 75.107 | 233 | 7 | 2 | 1 | 184 | 122 | 352 | 2.15e-99 | 300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0626990 | Msa1025070 | 0.809016 | 2.330024e-50 | -8.615850e-47 |
| Msa0627350 | Msa1025070 | 0.814234 | 1.709165e-51 | -8.615850e-47 |
| Msa1025070 | Msa1109080 | 0.831709 | 1.431036e-55 | -8.615850e-47 |
| Msa1025070 | Msa1152930 | 0.807851 | 4.131069e-50 | -8.615850e-47 |
| Msa0276920 | Msa1025070 | 0.809913 | 1.495782e-50 | -8.615850e-47 |
| Msa0530650 | Msa1025070 | 0.817987 | 2.479403e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025070 | MtrunA17_Chr7g0243081 | 75.107 | 233 | 7 | 2 | 1 | 184 | 122 | 352 | 4.15e-103 | 300 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 26 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGATAGTTCTCTAAAAT+TGG | 0.214021 | 7_1:-55243107 | None:intergenic |
| GATATTGATGTTGCTATTAT+TGG | 0.260085 | 7_1:-55243053 | None:intergenic |
| GAAAGGAGTCAATATTTCTT+TGG | 0.270906 | 7_1:+55243465 | Msa1025070:CDS |
| GGAAATTATCATTTGGTTCA+TGG | 0.310661 | 7_1:-55243138 | None:intergenic |
| GAAAAGAAAAGCTTCAAATA+TGG | 0.323316 | 7_1:+55243276 | Msa1025070:CDS |
| TAGAATATGTCTCATTCATA+TGG | 0.376004 | 7_1:-55243494 | None:intergenic |
| AGAAGAACAAGATAGTTCTA+AGG | 0.388489 | 7_1:+55243435 | Msa1025070:CDS |
| TATCACTAAAATTAAATTCA+AGG | 0.404007 | 7_1:+55243314 | Msa1025070:CDS |
| GATCATCTCTTAAAGATTCA+TGG | 0.404027 | 7_1:-55243174 | None:intergenic |
| AATGAGAGGAAATTATCATT+TGG | 0.404536 | 7_1:-55243145 | None:intergenic |
| TAAAATTGGATGAATCCATT+TGG | 0.405764 | 7_1:-55243093 | None:intergenic |
| GAATCTAGAGCTGAGTTCTA+TGG | 0.429313 | 7_1:+55243013 | Msa1025070:intron |
| AATCATCTTATGTTTGCAAA+AGG | 0.448039 | 7_1:+55243407 | Msa1025070:CDS |
| TAACAGTGTTGGCTGATCAT+AGG | 0.450325 | 7_1:+55242355 | Msa1025070:intron |
| TAATAGCAACATCAATATCC+AGG | 0.451694 | 7_1:+55243057 | Msa1025070:CDS |
| GAAATGAGATCTTGTGCTCT+TGG | 0.453092 | 7_1:-55243208 | None:intergenic |
| TTCAAATATGGATCTTGAGT+TGG | 0.495575 | 7_1:+55243288 | Msa1025070:CDS |
| AGTTCTAAGGAGCAAGAGAA+AGG | 0.525178 | 7_1:+55243448 | Msa1025070:CDS |
| AAAGTAGTTGACACAAATCA+AGG | 0.545661 | 7_1:+55242228 | Msa1025070:CDS |
| TGGTGATCATAAATGTATAG+AGG | 0.550152 | 7_1:+55243342 | Msa1025070:CDS |
| TTTGGAAAATACTATGACCC+TGG | 0.552012 | 7_1:-55243075 | None:intergenic |
| CATAGGCTTCTTGTAGACAA+TGG | 0.581433 | 7_1:+55242372 | Msa1025070:CDS |
| AAATTAAATTCAAGGAGCAA+TGG | 0.605129 | 7_1:+55243322 | Msa1025070:CDS |
| TAACTTGCCTGAAAATCAAG+AGG | 0.607982 | 7_1:+55243237 | Msa1025070:CDS |
| ATTCATGGCCACAAAATGAG+AGG | 0.620365 | 7_1:-55243159 | None:intergenic |
| AATAGCAACATCAATATCCA+GGG | 0.624382 | 7_1:+55243058 | Msa1025070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTAATTTTATTTTT+TGG | - | chr7_1:55242752-55242771 | None:intergenic | 0.0% |
| !!! | ATTTTTTTAATTTTATTTTT+TGG | - | chr7_1:55242752-55242771 | None:intergenic | 0.0% |
| !!! | AATTAACCTTTTTTTTTTTA+TGG | + | chr7_1:55242488-55242507 | Msa1025070:intron | 10.0% |
| !!! | AATTAACCTTTTTTTTTTTA+TGG | + | chr7_1:55242488-55242507 | Msa1025070:intron | 10.0% |
| !! | AATAAGTGATTACATAATTA+GGG | + | chr7_1:55242290-55242309 | Msa1025070:intron | 15.0% |
| !!! | TTTTTTTTTTTTTACAGATG+TGG | + | chr7_1:55242929-55242948 | Msa1025070:intron | 15.0% |
| !! | TATCACTAAAATTAAATTCA+AGG | + | chr7_1:55243314-55243333 | Msa1025070:CDS | 15.0% |
| !! | AATAAGTGATTACATAATTA+GGG | + | chr7_1:55242290-55242309 | Msa1025070:intron | 15.0% |
| !!! | TTTTTTTTTTTTTACAGATG+TGG | + | chr7_1:55242929-55242948 | Msa1025070:intron | 15.0% |
| !! | TATCACTAAAATTAAATTCA+AGG | + | chr7_1:55243314-55243333 | Msa1025070:CDS | 15.0% |
| !! | CAATAAGTGATTACATAATT+AGG | + | chr7_1:55242289-55242308 | Msa1025070:intron | 20.0% |
| !! | CATTCTCCATAAAAAAAAAA+AGG | - | chr7_1:55242497-55242516 | None:intergenic | 20.0% |
| !!! | AAGACCTTTTTTTATTCATA+GGG | + | chr7_1:55242640-55242659 | Msa1025070:intron | 20.0% |
| !!! | TTTTATTTTTTGGTCAAGTT+CGG | - | chr7_1:55242742-55242761 | None:intergenic | 20.0% |
| !! | GTAAATGACTTAAGAAAATT+TGG | - | chr7_1:55242819-55242838 | None:intergenic | 20.0% |
| !! | CAATAAGTGATTACATAATT+AGG | + | chr7_1:55242289-55242308 | Msa1025070:intron | 20.0% |
| !! | CATTCTCCATAAAAAAAAAA+AGG | - | chr7_1:55242497-55242516 | None:intergenic | 20.0% |
| !!! | AAGACCTTTTTTTATTCATA+GGG | + | chr7_1:55242640-55242659 | Msa1025070:intron | 20.0% |
| !!! | TTTTATTTTTTGGTCAAGTT+CGG | - | chr7_1:55242742-55242761 | None:intergenic | 20.0% |
| !! | GTAAATGACTTAAGAAAATT+TGG | - | chr7_1:55242819-55242838 | None:intergenic | 20.0% |
| ! | TTGTATATATGTAACAGTGT+TGG | + | chr7_1:55242344-55242363 | Msa1025070:intron | 25.0% |
| !! | CTATATGATGATGTTTGATT+TGG | - | chr7_1:55242450-55242469 | None:intergenic | 25.0% |
| ! | CAAATCAAACATCATCATAT+AGG | + | chr7_1:55242448-55242467 | Msa1025070:intron | 25.0% |
| !!! | TAAAAAAAGGTCTTGTTAAC+CGG | - | chr7_1:55242634-55242653 | None:intergenic | 25.0% |
| !!! | CAAGACCTTTTTTTATTCAT+AGG | + | chr7_1:55242639-55242658 | Msa1025070:intron | 25.0% |
| ! | TGATCCCTATGAATAAAAAA+AGG | - | chr7_1:55242647-55242666 | None:intergenic | 25.0% |
| ! | AGTTATCAAAACAAGTACAA+AGG | + | chr7_1:55242699-55242718 | Msa1025070:intron | 25.0% |
| ! | GTTATCAAAACAAGTACAAA+GGG | + | chr7_1:55242700-55242719 | Msa1025070:intron | 25.0% |
| !! | AAGAAAATTTGGAACAAAGT+TGG | - | chr7_1:55242808-55242827 | None:intergenic | 25.0% |
| ! | TGTTATTGTCTTAGAATTGA+AGG | + | chr7_1:55242900-55242919 | Msa1025070:intron | 25.0% |
| !! | GATATTGATGTTGCTATTAT+TGG | - | chr7_1:55243056-55243075 | None:intergenic | 25.0% |
| ! | TAAAATTGGATGAATCCATT+TGG | - | chr7_1:55243096-55243115 | None:intergenic | 25.0% |
| !!! | TGTTGATAGTTCTCTAAAAT+TGG | - | chr7_1:55243110-55243129 | None:intergenic | 25.0% |
| ! | AATGAGAGGAAATTATCATT+TGG | - | chr7_1:55243148-55243167 | None:intergenic | 25.0% |
| ! | GAAAAGAAAAGCTTCAAATA+TGG | + | chr7_1:55243276-55243295 | Msa1025070:CDS | 25.0% |
| ! | AAATTAAATTCAAGGAGCAA+TGG | + | chr7_1:55243322-55243341 | Msa1025070:CDS | 25.0% |
| ! | AATCATCTTATGTTTGCAAA+AGG | + | chr7_1:55243407-55243426 | Msa1025070:CDS | 25.0% |
| ! | TTGTATATATGTAACAGTGT+TGG | + | chr7_1:55242344-55242363 | Msa1025070:intron | 25.0% |
| !! | CTATATGATGATGTTTGATT+TGG | - | chr7_1:55242450-55242469 | None:intergenic | 25.0% |
| ! | CAAATCAAACATCATCATAT+AGG | + | chr7_1:55242448-55242467 | Msa1025070:intron | 25.0% |
| !!! | TAAAAAAAGGTCTTGTTAAC+CGG | - | chr7_1:55242634-55242653 | None:intergenic | 25.0% |
| !!! | CAAGACCTTTTTTTATTCAT+AGG | + | chr7_1:55242639-55242658 | Msa1025070:intron | 25.0% |
| ! | TGATCCCTATGAATAAAAAA+AGG | - | chr7_1:55242647-55242666 | None:intergenic | 25.0% |
| ! | AGTTATCAAAACAAGTACAA+AGG | + | chr7_1:55242699-55242718 | Msa1025070:intron | 25.0% |
| ! | GTTATCAAAACAAGTACAAA+GGG | + | chr7_1:55242700-55242719 | Msa1025070:intron | 25.0% |
| !! | AAGAAAATTTGGAACAAAGT+TGG | - | chr7_1:55242808-55242827 | None:intergenic | 25.0% |
| ! | TGTTATTGTCTTAGAATTGA+AGG | + | chr7_1:55242900-55242919 | Msa1025070:intron | 25.0% |
| !! | GATATTGATGTTGCTATTAT+TGG | - | chr7_1:55243056-55243075 | None:intergenic | 25.0% |
| ! | TAAAATTGGATGAATCCATT+TGG | - | chr7_1:55243096-55243115 | None:intergenic | 25.0% |
| !!! | TGTTGATAGTTCTCTAAAAT+TGG | - | chr7_1:55243110-55243129 | None:intergenic | 25.0% |
| ! | AATGAGAGGAAATTATCATT+TGG | - | chr7_1:55243148-55243167 | None:intergenic | 25.0% |
| ! | GAAAAGAAAAGCTTCAAATA+TGG | + | chr7_1:55243276-55243295 | Msa1025070:CDS | 25.0% |
| ! | AAATTAAATTCAAGGAGCAA+TGG | + | chr7_1:55243322-55243341 | Msa1025070:CDS | 25.0% |
| ! | AATCATCTTATGTTTGCAAA+AGG | + | chr7_1:55243407-55243426 | Msa1025070:CDS | 25.0% |
| AAAGTAGTTGACACAAATCA+AGG | + | chr7_1:55242228-55242247 | Msa1025070:CDS | 30.0% | |
| ACACAAATCAAGGTACAATA+AGG | + | chr7_1:55242238-55242257 | Msa1025070:intron | 30.0% | |
| TTCTTATCGAAAAACGAGAA+GGG | - | chr7_1:55242676-55242695 | None:intergenic | 30.0% | |
| ATTCTTATCGAAAAACGAGA+AGG | - | chr7_1:55242677-55242696 | None:intergenic | 30.0% | |
| ! | CGTTTAAAATTGTAACCTCA+AGG | + | chr7_1:55242838-55242857 | Msa1025070:intron | 30.0% |
| ! | GATTTGAAGTTTAAACCTTG+AGG | - | chr7_1:55242856-55242875 | None:intergenic | 30.0% |
| ! | AGTAATTTTACAACTGTCGT+TGG | - | chr7_1:55242881-55242900 | None:intergenic | 30.0% |
| ! | TTTTACAGATGTGGATCATA+TGG | + | chr7_1:55242938-55242957 | Msa1025070:intron | 30.0% |
| TTTACAGATGTGGATCATAT+GGG | + | chr7_1:55242939-55242958 | Msa1025070:intron | 30.0% | |
| ! | TTGTACCATGTTTTCATACA+TGG | - | chr7_1:55242978-55242997 | None:intergenic | 30.0% |
| TAATAGCAACATCAATATCC+AGG | + | chr7_1:55243057-55243076 | Msa1025070:CDS | 30.0% | |
| AATAGCAACATCAATATCCA+GGG | + | chr7_1:55243058-55243077 | Msa1025070:CDS | 30.0% | |
| ! | GGAAATTATCATTTGGTTCA+TGG | - | chr7_1:55243141-55243160 | None:intergenic | 30.0% |
| ! | GATAATTTCCTCTCATTTTG+TGG | + | chr7_1:55243151-55243170 | Msa1025070:CDS | 30.0% |
| GATCATCTCTTAAAGATTCA+TGG | - | chr7_1:55243177-55243196 | None:intergenic | 30.0% | |
| TTCAAATATGGATCTTGAGT+TGG | + | chr7_1:55243288-55243307 | Msa1025070:CDS | 30.0% | |
| TGGTGATCATAAATGTATAG+AGG | + | chr7_1:55243342-55243361 | Msa1025070:CDS | 30.0% | |
| ! | AGAAGAACAAGATAGTTCTA+AGG | + | chr7_1:55243435-55243454 | Msa1025070:CDS | 30.0% |
| GAAAGGAGTCAATATTTCTT+TGG | + | chr7_1:55243465-55243484 | Msa1025070:CDS | 30.0% | |
| AAAGTAGTTGACACAAATCA+AGG | + | chr7_1:55242228-55242247 | Msa1025070:CDS | 30.0% | |
| ACACAAATCAAGGTACAATA+AGG | + | chr7_1:55242238-55242257 | Msa1025070:intron | 30.0% | |
| TTCTTATCGAAAAACGAGAA+GGG | - | chr7_1:55242676-55242695 | None:intergenic | 30.0% | |
| ATTCTTATCGAAAAACGAGA+AGG | - | chr7_1:55242677-55242696 | None:intergenic | 30.0% | |
| ! | CGTTTAAAATTGTAACCTCA+AGG | + | chr7_1:55242838-55242857 | Msa1025070:intron | 30.0% |
| ! | GATTTGAAGTTTAAACCTTG+AGG | - | chr7_1:55242856-55242875 | None:intergenic | 30.0% |
| ! | AGTAATTTTACAACTGTCGT+TGG | - | chr7_1:55242881-55242900 | None:intergenic | 30.0% |
| ! | TTTTACAGATGTGGATCATA+TGG | + | chr7_1:55242938-55242957 | Msa1025070:intron | 30.0% |
| TTTACAGATGTGGATCATAT+GGG | + | chr7_1:55242939-55242958 | Msa1025070:intron | 30.0% | |
| ! | TTGTACCATGTTTTCATACA+TGG | - | chr7_1:55242978-55242997 | None:intergenic | 30.0% |
| TAATAGCAACATCAATATCC+AGG | + | chr7_1:55243057-55243076 | Msa1025070:CDS | 30.0% | |
| AATAGCAACATCAATATCCA+GGG | + | chr7_1:55243058-55243077 | Msa1025070:CDS | 30.0% | |
| ! | GGAAATTATCATTTGGTTCA+TGG | - | chr7_1:55243141-55243160 | None:intergenic | 30.0% |
| ! | GATAATTTCCTCTCATTTTG+TGG | + | chr7_1:55243151-55243170 | Msa1025070:CDS | 30.0% |
| GATCATCTCTTAAAGATTCA+TGG | - | chr7_1:55243177-55243196 | None:intergenic | 30.0% | |
| TTCAAATATGGATCTTGAGT+TGG | + | chr7_1:55243288-55243307 | Msa1025070:CDS | 30.0% | |
| TGGTGATCATAAATGTATAG+AGG | + | chr7_1:55243342-55243361 | Msa1025070:CDS | 30.0% | |
| ! | AGAAGAACAAGATAGTTCTA+AGG | + | chr7_1:55243435-55243454 | Msa1025070:CDS | 30.0% |
| GAAAGGAGTCAATATTTCTT+TGG | + | chr7_1:55243465-55243484 | Msa1025070:CDS | 30.0% | |
| ! | AATTTTACAACTGTCGTTGG+AGG | - | chr7_1:55242878-55242897 | None:intergenic | 35.0% |
| TTACAGATGTGGATCATATG+GGG | + | chr7_1:55242940-55242959 | Msa1025070:intron | 35.0% | |
| TCTTGCCATGTATGAAAACA+TGG | + | chr7_1:55242970-55242989 | Msa1025070:intron | 35.0% | |
| TTTGGAAAATACTATGACCC+TGG | - | chr7_1:55243078-55243097 | None:intergenic | 35.0% | |
| ! | GGGTCATAGTATTTTCCAAA+TGG | + | chr7_1:55243078-55243097 | Msa1025070:CDS | 35.0% |
| ! | TAACTTGCCTGAAAATCAAG+AGG | + | chr7_1:55243237-55243256 | Msa1025070:CDS | 35.0% |
| ! | AGTTCTTCCTCTTGATTTTC+AGG | - | chr7_1:55243247-55243266 | None:intergenic | 35.0% |
| ! | AATTTTACAACTGTCGTTGG+AGG | - | chr7_1:55242878-55242897 | None:intergenic | 35.0% |
| TTACAGATGTGGATCATATG+GGG | + | chr7_1:55242940-55242959 | Msa1025070:intron | 35.0% | |
| TCTTGCCATGTATGAAAACA+TGG | + | chr7_1:55242970-55242989 | Msa1025070:intron | 35.0% | |
| TTTGGAAAATACTATGACCC+TGG | - | chr7_1:55243078-55243097 | None:intergenic | 35.0% | |
| ! | GGGTCATAGTATTTTCCAAA+TGG | + | chr7_1:55243078-55243097 | Msa1025070:CDS | 35.0% |
| ! | TAACTTGCCTGAAAATCAAG+AGG | + | chr7_1:55243237-55243256 | Msa1025070:CDS | 35.0% |
| ! | AGTTCTTCCTCTTGATTTTC+AGG | - | chr7_1:55243247-55243266 | None:intergenic | 35.0% |
| !! | TAACAGTGTTGGCTGATCAT+AGG | + | chr7_1:55242355-55242374 | Msa1025070:intron | 40.0% |
| CATAGGCTTCTTGTAGACAA+TGG | + | chr7_1:55242372-55242391 | Msa1025070:CDS | 40.0% | |
| ATCTTTAACCATTACCCCTG+AGG | + | chr7_1:55242605-55242624 | Msa1025070:intron | 40.0% | |
| TCTTTAACCATTACCCCTGA+GGG | + | chr7_1:55242606-55242625 | Msa1025070:intron | 40.0% | |
| ! | GAATCTAGAGCTGAGTTCTA+TGG | + | chr7_1:55243013-55243032 | Msa1025070:intron | 40.0% |
| ATTCATGGCCACAAAATGAG+AGG | - | chr7_1:55243162-55243181 | None:intergenic | 40.0% | |
| GAAATGAGATCTTGTGCTCT+TGG | - | chr7_1:55243211-55243230 | None:intergenic | 40.0% | |
| !! | AGTTCTAAGGAGCAAGAGAA+AGG | + | chr7_1:55243448-55243467 | Msa1025070:CDS | 40.0% |
| !! | TAACAGTGTTGGCTGATCAT+AGG | + | chr7_1:55242355-55242374 | Msa1025070:intron | 40.0% |
| CATAGGCTTCTTGTAGACAA+TGG | + | chr7_1:55242372-55242391 | Msa1025070:CDS | 40.0% | |
| ATCTTTAACCATTACCCCTG+AGG | + | chr7_1:55242605-55242624 | Msa1025070:intron | 40.0% | |
| TCTTTAACCATTACCCCTGA+GGG | + | chr7_1:55242606-55242625 | Msa1025070:intron | 40.0% | |
| ! | GAATCTAGAGCTGAGTTCTA+TGG | + | chr7_1:55243013-55243032 | Msa1025070:intron | 40.0% |
| ATTCATGGCCACAAAATGAG+AGG | - | chr7_1:55243162-55243181 | None:intergenic | 40.0% | |
| GAAATGAGATCTTGTGCTCT+TGG | - | chr7_1:55243211-55243230 | None:intergenic | 40.0% | |
| !! | AGTTCTAAGGAGCAAGAGAA+AGG | + | chr7_1:55243448-55243467 | Msa1025070:CDS | 40.0% |
| ! | GGAGTATAGCCTTGAAGCAT+GGG | - | chr7_1:55242429-55242448 | None:intergenic | 45.0% |
| ! | TGGAGTATAGCCTTGAAGCA+TGG | - | chr7_1:55242430-55242449 | None:intergenic | 45.0% |
| AATGCTAACTAGTGCCCCAA+GGG | + | chr7_1:55242513-55242532 | Msa1025070:intron | 45.0% | |
| TTAACCAATGCATGCCCTTG+GGG | - | chr7_1:55242530-55242549 | None:intergenic | 45.0% | |
| CTTAACCAATGCATGCCCTT+GGG | - | chr7_1:55242531-55242550 | None:intergenic | 45.0% | |
| ! | GGAGTATAGCCTTGAAGCAT+GGG | - | chr7_1:55242429-55242448 | None:intergenic | 45.0% |
| ! | TGGAGTATAGCCTTGAAGCA+TGG | - | chr7_1:55242430-55242449 | None:intergenic | 45.0% |
| AATGCTAACTAGTGCCCCAA+GGG | + | chr7_1:55242513-55242532 | Msa1025070:intron | 45.0% | |
| TTAACCAATGCATGCCCTTG+GGG | - | chr7_1:55242530-55242549 | None:intergenic | 45.0% | |
| CTTAACCAATGCATGCCCTT+GGG | - | chr7_1:55242531-55242550 | None:intergenic | 45.0% | |
| ACCCAACTTCCCATGCTTCA+AGG | + | chr7_1:55242417-55242436 | Msa1025070:intron | 50.0% | |
| GCCTTGAAGCATGGGAAGTT+GGG | - | chr7_1:55242421-55242440 | None:intergenic | 50.0% | |
| AGCCTTGAAGCATGGGAAGT+TGG | - | chr7_1:55242422-55242441 | None:intergenic | 50.0% | |
| GAATGCTAACTAGTGCCCCA+AGG | + | chr7_1:55242512-55242531 | Msa1025070:intron | 50.0% | |
| GCTTAACCAATGCATGCCCT+TGG | - | chr7_1:55242532-55242551 | None:intergenic | 50.0% | |
| ACCCAACTTCCCATGCTTCA+AGG | + | chr7_1:55242417-55242436 | Msa1025070:intron | 50.0% | |
| GCCTTGAAGCATGGGAAGTT+GGG | - | chr7_1:55242421-55242440 | None:intergenic | 50.0% | |
| AGCCTTGAAGCATGGGAAGT+TGG | - | chr7_1:55242422-55242441 | None:intergenic | 50.0% | |
| GAATGCTAACTAGTGCCCCA+AGG | + | chr7_1:55242512-55242531 | Msa1025070:intron | 50.0% | |
| GCTTAACCAATGCATGCCCT+TGG | - | chr7_1:55242532-55242551 | None:intergenic | 50.0% | |
| TTGTTAACCGGTGCCCTCAG+GGG | - | chr7_1:55242622-55242641 | None:intergenic | 55.0% | |
| CTTGTTAACCGGTGCCCTCA+GGG | - | chr7_1:55242623-55242642 | None:intergenic | 55.0% | |
| TCTTGTTAACCGGTGCCCTC+AGG | - | chr7_1:55242624-55242643 | None:intergenic | 55.0% | |
| TTGTTAACCGGTGCCCTCAG+GGG | - | chr7_1:55242622-55242641 | None:intergenic | 55.0% | |
| CTTGTTAACCGGTGCCCTCA+GGG | - | chr7_1:55242623-55242642 | None:intergenic | 55.0% | |
| TCTTGTTAACCGGTGCCCTC+AGG | - | chr7_1:55242624-55242643 | None:intergenic | 55.0% | |
| ! | AGTGCCCCAAGGGCATGCAT+TGG | + | chr7_1:55242523-55242542 | Msa1025070:intron | 60.0% |
| ! | ACCATTACCCCTGAGGGCAC+CGG | + | chr7_1:55242612-55242631 | Msa1025070:intron | 60.0% |
| ! | AGTGCCCCAAGGGCATGCAT+TGG | + | chr7_1:55242523-55242542 | Msa1025070:intron | 60.0% |
| ! | ACCATTACCCCTGAGGGCAC+CGG | + | chr7_1:55242612-55242631 | Msa1025070:intron | 60.0% |
| ACCGGTGCCCTCAGGGGTAA+TGG | - | chr7_1:55242616-55242635 | None:intergenic | 65.0% | |
| ACCGGTGCCCTCAGGGGTAA+TGG | - | chr7_1:55242616-55242635 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 55242213 | 55243501 | 55242213 | ID=Msa1025070;Name=Msa1025070 |
| chr7_1 | mRNA | 55242213 | 55243501 | 55242213 | ID=Msa1025070-mRNA-1;Parent=Msa1025070;Name=Msa1025070-mRNA-1;_AED=0.16;_eAED=0.18;_QI=0|0|0|1|0.5|0.33|3|0|184 |
| chr7_1 | exon | 55242213 | 55242249 | 55242213 | ID=Msa1025070-mRNA-1:exon:11049;Parent=Msa1025070-mRNA-1 |
| chr7_1 | exon | 55242361 | 55242404 | 55242361 | ID=Msa1025070-mRNA-1:exon:11050;Parent=Msa1025070-mRNA-1 |
| chr7_1 | exon | 55243028 | 55243501 | 55243028 | ID=Msa1025070-mRNA-1:exon:11051;Parent=Msa1025070-mRNA-1 |
| chr7_1 | CDS | 55242213 | 55242249 | 55242213 | ID=Msa1025070-mRNA-1:cds;Parent=Msa1025070-mRNA-1 |
| chr7_1 | CDS | 55242361 | 55242404 | 55242361 | ID=Msa1025070-mRNA-1:cds;Parent=Msa1025070-mRNA-1 |
| chr7_1 | CDS | 55243028 | 55243501 | 55243028 | ID=Msa1025070-mRNA-1:cds;Parent=Msa1025070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
