AlfalfaGEDB | Msa1025070

M. sativa cultivar zhongmu-4 / Msa1025070

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1025070	XP_003623331.2	75.107	233	7	2	1	184	122	352	4.51e-99	300

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1025070	G7KSC8	75.107	233	7	2	1	184	122	352	2.15e-99	300

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0276920	Msa1025070	0.809913	1.495782e-50	-8.615850e-47
Msa0530650	Msa1025070	0.817987	2.479403e-52	-8.615850e-47
Msa0626990	Msa1025070	0.809016	2.330024e-50	-8.615850e-47
Msa0627350	Msa1025070	0.814234	1.709165e-51	-8.615850e-47
Msa1025070	Msa1109080	0.831709	1.431036e-55	-8.615850e-47
Msa1025070	Msa1152930	0.807851	4.131069e-50	-8.615850e-47

Showing 1 to 6 of 6 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1025070	MtrunA17_Chr7g0243081	75.107	233	7	2	1	184	122	352	4.15e-103	300

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 26 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTAGTTGACACAAATCA+AGG	0.545661	7_1:+55242228	Msa1025070:CDS
AAATTAAATTCAAGGAGCAA+TGG	0.605129	7_1:+55243322	Msa1025070:CDS
AATAGCAACATCAATATCCA+GGG	0.624382	7_1:+55243058	Msa1025070:CDS
AATCATCTTATGTTTGCAAA+AGG	0.448039	7_1:+55243407	Msa1025070:CDS
AATGAGAGGAAATTATCATT+TGG	0.404536	7_1:-55243145	None:intergenic
AGAAGAACAAGATAGTTCTA+AGG	0.388489	7_1:+55243435	Msa1025070:CDS
AGTTCTAAGGAGCAAGAGAA+AGG	0.525178	7_1:+55243448	Msa1025070:CDS
ATTCATGGCCACAAAATGAG+AGG	0.620365	7_1:-55243159	None:intergenic
CATAGGCTTCTTGTAGACAA+TGG	0.581433	7_1:+55242372	Msa1025070:CDS
GAAAAGAAAAGCTTCAAATA+TGG	0.323316	7_1:+55243276	Msa1025070:CDS

Showing 1 to 10 of 26 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTAGTTGACACAAATCA+AGG	+	chr7_1:55242228-55242247	Msa1025070:CDS	30.0%
ACACAAATCAAGGTACAATA+AGG	+	chr7_1:55242238-55242257	Msa1025070:intron	30.0%
TTCTTATCGAAAAACGAGAA+GGG	-	chr7_1:55242676-55242695	None:intergenic	30.0%
ATTCTTATCGAAAAACGAGA+AGG	-	chr7_1:55242677-55242696	None:intergenic	30.0%
TTTACAGATGTGGATCATAT+GGG	+	chr7_1:55242939-55242958	Msa1025070:intron	30.0%
TAATAGCAACATCAATATCC+AGG	+	chr7_1:55243057-55243076	Msa1025070:CDS	30.0%
AATAGCAACATCAATATCCA+GGG	+	chr7_1:55243058-55243077	Msa1025070:CDS	30.0%
GATCATCTCTTAAAGATTCA+TGG	-	chr7_1:55243177-55243196	None:intergenic	30.0%
TTCAAATATGGATCTTGAGT+TGG	+	chr7_1:55243288-55243307	Msa1025070:CDS	30.0%
TGGTGATCATAAATGTATAG+AGG	+	chr7_1:55243342-55243361	Msa1025070:CDS	30.0%

Showing 1 to 10 of 154 entries

Previous1 2 3 4 5…16Next

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	55242213	55243501	55242213	ID=Msa1025070;Name=Msa1025070
chr7_1	mRNA	55242213	55243501	55242213	ID=Msa1025070-mRNA-1;Parent=Msa1025070;Name=Msa1025070-mRNA-1;_AED=0.16;_eAED=0.18;_QI=0\|0\|0\|1\|0.5\|0.33\|3\|0\|184
chr7_1	exon	55242213	55242249	55242213	ID=Msa1025070-mRNA-1:exon:11049;Parent=Msa1025070-mRNA-1
chr7_1	exon	55242361	55242404	55242361	ID=Msa1025070-mRNA-1:exon:11050;Parent=Msa1025070-mRNA-1
chr7_1	exon	55243028	55243501	55243028	ID=Msa1025070-mRNA-1:exon:11051;Parent=Msa1025070-mRNA-1
chr7_1	CDS	55242213	55242249	55242213	ID=Msa1025070-mRNA-1:cds;Parent=Msa1025070-mRNA-1
chr7_1	CDS	55242361	55242404	55242361	ID=Msa1025070-mRNA-1:cds;Parent=Msa1025070-mRNA-1
chr7_1	CDS	55243028	55243501	55243028	ID=Msa1025070-mRNA-1:cds;Parent=Msa1025070-mRNA-1

Gene Sequence

>Msa1025070

ATGTATAGAAGCAAGAAAGTAGTTGACACAAATCAAGTGTTGGCTGATCATAGGCTTCTTGTAGACAATGGAGACAGAAATTTCTATGGCAAAATGATTGAGAGAACCAATAATAGCAACATCAATATCCAGGGTCATAGTATTTTCCAAATGGATTCATCCAATTTTAGAGAACTATCAACAACTAAAGTCCATGAACCAAATGATAATTTCCTCTCATTTTGTGGCCATGAATCTTTAAGAGATGATCTACAAGTTCAGCCAAGAGCACAAGATCTCATTTCGAACGATAACTTGCCTGAAAATCAAGAGGAAGAACTGAAAACAATGAAAAGAAAAGCTTCAAATATGGATCTTGAGTTGGATCTATCACTAAAATTAAATTCAAGGAGCAATGGTGATCATAAATGTATAGAGGAGCATGAAATTGATAGCAATTTATCACTCTCTTTGTATTCTCAATCATCTTATGTTTGCAAAAGGATGAAAGAAGAACAAGATAGTTCTAAGGAGCAAGAGAAAGGAGTCAATATTTCTTTGGATCTAACCATATGA

Protein sequence

>Msa1025070

MYRSKKVVDTNQVLADHRLLVDNGDRNFYGKMIERTNNSNINIQGHSIFQMDSSNFRELSTTKVHEPNDNFLSFCGHESLRDDLQVQPRAQDLISNDNLPENQEEELKTMKRKASNMDLELDLSLKLNSRSNGDHKCIEEHEIDSNLSLSLYSQSSYVCKRMKEEQDSSKEQEKGVNISLDLTI*