AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1109080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1109080 MtrunA17_Chr7g0243081 93.220 354 18 2 1 350 1 352 0.0 644
Msa1109080 MtrunA17_Chr2g0320231 73.494 83 22 0 50 132 80 162 2.90e-37 137
Msa1109080 MtrunA17_Chr8g0379121 60.909 110 39 1 27 132 67 176 5.72e-37 137
Msa1109080 MtrunA17_Chr2g0288601 75.362 69 17 0 50 118 54 122 6.41e-32 116
Msa1109080 MtrunA17_Chr2g0283951 68.605 86 23 1 50 131 72 157 9.59e-32 122
Msa1109080 MtrunA17_Chr1g0210911 72.727 66 18 0 58 123 13 78 2.12e-28 112
Msa1109080 MtrunA17_Chr1g0162931 65.278 72 25 0 52 123 3 74 4.64e-28 110
Msa1109080 MtrunA17_Chr6g0479431 55.294 85 31 1 66 150 201 278 3.21e-23 99.0
Msa1109080 MtrunA17_Chr8g0366281 44.144 111 58 1 35 141 137 247 1.43e-22 97.1
Msa1109080 MtrunA17_Chr1g0154261 59.211 76 29 1 66 141 125 198 2.05e-22 95.5
Msa1109080 MtrunA17_Chr5g0410741 56.098 82 35 1 61 141 212 293 4.67e-22 96.3
Msa1109080 MtrunA17_Chr3g0095611 42.105 114 56 3 49 162 1 104 7.88e-22 92.0
Msa1109080 MtrunA17_Chr3g0109981 64.179 67 23 1 61 126 267 333 2.30e-21 94.7
Msa1109080 MtrunA17_Chr7g0261911 64.286 56 20 0 68 123 263 318 5.53e-19 87.8
Msa1109080 MtrunA17_Chr6g0461641 66.038 53 18 0 68 120 43 95 1.58e-18 85.9
Msa1109080 MtrunA17_Chr1g0190301 62.500 56 21 0 68 123 176 231 1.90e-18 85.5
Msa1109080 MtrunA17_Chr7g0274471 62.500 56 21 0 68 123 219 274 2.32e-18 85.9
Msa1109080 MtrunA17_Chr2g0321461 62.500 56 21 0 68 123 46 101 2.47e-18 85.5
Msa1109080 MtrunA17_Chr5g0409731 62.069 58 22 0 63 120 21 78 2.93e-18 84.0
Msa1109080 MtrunA17_Chr7g0258551 49.367 79 39 1 63 140 208 286 3.56e-18 84.7
Msa1109080 MtrunA17_Chr7g0254981 55.224 67 30 0 59 125 42 108 1.05e-17 82.0
Msa1109080 MtrunA17_Chr1g0197171 60.714 56 22 0 68 123 45 100 5.98e-17 80.1
Msa1109080 MtrunA17_Chr2g0290991 60.714 56 22 0 68 123 40 95 7.01e-17 80.1
Msa1109080 MtrunA17_Chr5g0417521 56.604 53 23 0 68 120 16 68 1.43e-16 79.7
Msa1109080 MtrunA17_Chr2g0291021 61.404 57 22 0 69 125 51 107 1.97e-16 79.3
Msa1109080 MtrunA17_Chr1g0175091 52.055 73 34 1 69 140 260 332 2.20e-16 79.7
Msa1109080 MtrunA17_Chr1g0175081 56.364 55 24 0 69 123 24 78 3.01e-16 73.6
Msa1109080 MtrunA17_Chr8g0356501 55.357 56 25 0 68 123 38 93 1.18e-15 77.0
Msa1109080 MtrunA17_Chr2g0310011 55.357 56 25 0 68 123 36 91 2.92e-15 75.9
Msa1109080 MtrunA17_Chr4g0042451 55.357 56 25 0 68 123 18 73 3.87e-15 75.5
Msa1109080 MtrunA17_Chr7g0242521 56.667 60 23 1 69 125 15 74 2.96e-13 68.6
Msa1109080 MtrunA17_Chr4g0009901 51.786 56 26 1 65 120 166 220 1.09e-12 67.4
Msa1109080 MtrunA17_Chr1g0175071 54.717 53 24 0 69 121 179 231 1.34e-12 67.8
Msa1109080 MtrunA17_Chr4g0045361 45.205 73 31 1 57 120 255 327 2.37e-12 67.8
Msa1109080 MtrunA17_Chr4g0031961 48.684 76 37 2 46 120 109 183 6.50e-12 65.9
Msa1109080 MtrunA17_Chr2g0304841 39.316 117 57 6 66 178 212 318 8.46e-12 66.2
Msa1109080 MtrunA17_Chr4g0062921 55.769 52 23 0 69 120 237 288 9.12e-12 65.9
Msa1109080 MtrunA17_Chr7g0258531 49.231 65 33 0 69 133 215 279 1.70e-11 64.7
Msa1109080 MtrunA17_Chr7g0275401 36.842 114 48 4 31 122 135 246 2.76e-11 63.5
Msa1109080 MtrunA17_Chr5g0422621 55.102 49 22 0 72 120 203 251 7.24e-11 62.8
Msa1109080 MtrunA17_Chr1g0198601 55.102 49 22 0 72 120 216 264 7.64e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1109080 AT2G38300.1 41.718 326 154 13 44 350 32 340 3.16e-57 189
Msa1109080 AT2G40260.1 54.610 141 45 2 17 157 49 170 3.53e-39 144
Msa1109080 AT2G42660.1 78.788 66 14 0 59 124 42 107 2.13e-31 119
Msa1109080 AT2G02060.2 65.432 81 28 0 40 120 2 82 1.49e-29 114
Msa1109080 AT2G02060.1 65.432 81 28 0 40 120 2 82 1.49e-29 114
Msa1109080 AT4G04605.1 59.302 86 33 1 55 138 2 87 1.71e-28 110
Msa1109080 AT1G14600.1 68.657 67 21 0 59 125 15 81 2.25e-28 111
Msa1109080 AT4G04580.1 58.209 67 28 0 57 123 4 70 3.37e-23 95.1
Msa1109080 AT5G42630.2 67.213 61 20 0 66 126 104 164 2.39e-22 94.4
Msa1109080 AT5G42630.1 67.213 61 20 0 66 126 104 164 2.49e-22 95.5
Msa1109080 AT1G32240.1 54.878 82 36 1 61 141 206 287 9.39e-22 95.5
Msa1109080 AT1G32240.2 54.878 82 36 1 61 141 206 287 1.15e-21 95.1
Msa1109080 AT4G04555.1 60.000 65 26 0 59 123 6 70 1.54e-21 88.6
Msa1109080 AT5G16560.1 58.108 74 30 1 61 133 212 285 5.53e-21 93.6
Msa1109080 AT4G17695.1 62.295 61 23 0 66 126 163 223 4.23e-20 90.1
Msa1109080 AT5G45580.1 62.069 58 22 0 63 120 3 60 1.96e-18 84.3
Msa1109080 AT5G45580.2 62.069 58 22 0 63 120 19 76 2.34e-18 84.3
Msa1109080 AT3G04030.1 58.929 56 23 0 68 123 46 101 1.77e-17 83.2
Msa1109080 AT3G04030.3 58.929 56 23 0 68 123 46 101 2.01e-17 83.2
Msa1109080 AT3G04450.3 49.333 75 30 1 57 123 220 294 2.20e-17 82.0
Msa1109080 AT3G04450.4 49.333 75 30 1 57 123 180 254 2.64e-17 82.8
Msa1109080 AT3G04450.2 49.333 75 30 1 57 123 180 254 2.64e-17 82.8
Msa1109080 AT3G04450.1 49.333 75 30 1 57 123 220 294 2.65e-17 83.2
Msa1109080 AT5G29000.1 63.636 55 20 0 69 123 190 244 3.30e-17 82.4
Msa1109080 AT5G29000.3 63.636 55 20 0 69 123 190 244 3.30e-17 82.4
Msa1109080 AT5G18240.2 58.929 56 23 0 68 123 46 101 3.44e-17 82.4
Msa1109080 AT5G18240.3 58.929 56 23 0 68 123 46 101 3.44e-17 82.4
Msa1109080 AT5G29000.4 63.636 55 20 0 69 123 233 287 3.73e-17 81.3
Msa1109080 AT4G28610.1 61.818 55 21 0 69 123 227 281 3.80e-17 82.4
Msa1109080 AT5G18240.1 58.929 56 23 0 68 123 46 101 3.87e-17 82.4
Msa1109080 AT5G18240.4 58.929 56 23 0 68 123 46 101 3.87e-17 82.4
Msa1109080 AT5G18240.5 58.929 56 23 0 68 123 46 101 4.05e-17 82.4
Msa1109080 AT5G29000.2 63.636 55 20 0 69 123 233 287 4.60e-17 82.0
Msa1109080 AT2G01060.1 61.404 57 22 0 69 125 17 73 1.08e-16 79.7
Msa1109080 AT3G12730.1 57.143 56 24 0 68 123 24 79 1.42e-16 78.6
Msa1109080 AT4G13640.1 56.604 53 23 0 68 120 38 90 5.47e-16 77.8
Msa1109080 AT4G13640.2 56.604 53 23 0 68 120 38 90 5.72e-16 77.8
Msa1109080 AT3G24120.1 56.604 53 23 0 68 120 42 94 7.13e-16 77.4
Msa1109080 AT3G24120.2 56.604 53 23 0 68 120 42 94 7.23e-16 77.4
Msa1109080 AT3G13040.3 59.649 57 23 0 69 125 243 299 8.21e-16 78.6
Msa1109080 AT3G13040.1 59.649 57 23 0 69 125 243 299 8.21e-16 78.6
Msa1109080 AT3G13040.2 59.649 57 23 0 69 125 243 299 8.21e-16 78.6
Msa1109080 AT1G79430.2 55.357 56 25 0 68 123 35 90 1.86e-15 77.0
Msa1109080 AT2G20400.2 57.895 57 24 0 69 125 233 289 1.97e-15 77.4
Msa1109080 AT2G20400.1 57.895 57 24 0 69 125 233 289 1.97e-15 77.4
Msa1109080 AT5G06800.3 54.098 61 28 0 69 129 194 254 3.23e-15 75.5
Msa1109080 AT3G04030.2 57.143 56 23 1 68 123 46 100 4.99e-15 75.9
Msa1109080 AT1G69580.1 55.357 56 25 0 68 123 35 90 6.66e-15 75.1
Msa1109080 AT1G69580.2 55.357 56 25 0 68 123 35 90 7.17e-15 75.1
Msa1109080 AT5G06800.2 54.098 61 28 0 69 129 194 254 7.64e-15 75.5
Msa1109080 AT5G06800.1 54.098 61 28 0 69 129 194 254 8.01e-15 75.1
Msa1109080 AT2G06020.1 36.522 115 62 3 15 120 27 139 5.39e-14 72.0
Msa1109080 AT5G59570.2 45.455 88 44 3 35 120 108 193 2.70e-13 70.1
Msa1109080 AT5G59570.1 45.455 88 44 3 35 120 108 193 2.70e-13 70.1
Msa1109080 AT2G40260.2 58.929 56 21 1 102 157 1 54 2.02e-12 67.4
Msa1109080 AT1G25550.1 59.184 49 20 0 72 120 214 262 2.24e-12 67.8
Msa1109080 AT2G03500.1 57.143 49 21 0 72 120 238 286 1.10e-11 66.2
Msa1109080 AT1G25550.2 46.269 67 32 1 72 138 214 276 1.46e-11 64.7
Msa1109080 AT3G46640.2 54.545 55 24 1 66 120 143 196 1.98e-11 64.7
Msa1109080 AT3G46640.1 54.545 55 24 1 66 120 143 196 1.98e-11 64.7
Msa1109080 AT3G46640.3 54.545 55 24 1 66 120 143 196 3.02e-11 64.3
Msa1109080 AT3G62670.1 43.056 72 34 2 53 120 200 268 3.50e-11 64.7

Find 71 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTGAAGAACCAATTT+TGG 0.129269 7_3:-52429535 None:intergenic
TGTTGATAGTTCTCTAAAAT+TGG 0.214021 7_3:-52430610 None:intergenic
TCTATATATATGTCAATTAT+TGG 0.224109 7_3:-52428908 None:intergenic
GATATTGATGCTGCTATTAT+TGG 0.224571 7_3:-52430556 None:intergenic
CTTCAATTGATGAACATAAA+AGG 0.228877 7_3:+52429547 Msa1109080:CDS
GAAAGGAGTCAATATTTCTT+TGG 0.270906 7_3:+52430968 Msa1109080:CDS
CTATATGATGATGTTTGATT+TGG 0.300830 7_3:-52429956 None:intergenic
GGAAATTATCATTTGGTTCA+TGG 0.310661 7_3:-52430641 None:intergenic
GAAAAGAAAAGCTTCAAATA+TGG 0.323316 7_3:+52430779 Msa1109080:CDS
TCATGTGAAGAGTCATTTAC+AGG 0.340032 7_3:+52429582 Msa1109080:CDS
AAATATTTCATTTCATCAAT+TGG 0.340801 7_3:+52428872 Msa1109080:five_prime_UTR
TGTAGGAGCAACTCCAAAAT+TGG 0.369328 7_3:+52429522 Msa1109080:intron
TAGAATATGTCTCATTCATA+TGG 0.376004 7_3:-52430997 None:intergenic
GAGGTATATAGATATATTTA+AGG 0.384760 7_3:+52428820 Msa1109080:five_prime_UTR
TCTCATATTCATCTAGCTAT+AGG 0.386781 7_3:-52428966 None:intergenic
AGAAGAACAAGATAGTTCTA+AGG 0.388489 7_3:+52430938 Msa1109080:CDS
GCCTTGAAGCATGGGAAGTT+GGG 0.390047 7_3:-52429927 None:intergenic
ATTAATTGAAACACTTGCCT+TGG 0.402233 7_3:-52429017 None:intergenic
CTCGAAGGAGGGTGAACAAT+AGG 0.402435 7_3:+52428796 Msa1109080:five_prime_UTR
TATCACTAAAATTAAATTCA+AGG 0.404007 7_3:+52430817 Msa1109080:CDS
GATCATCTCTTAAAGATTCA+TGG 0.404027 7_3:-52430677 None:intergenic
AATGAGAGGAAATTATCATT+TGG 0.404536 7_3:-52430648 None:intergenic
TAAAATTGGATGAATCCATT+TGG 0.405764 7_3:-52430596 None:intergenic
CTTCATGCTGTGCAAAGACT+TGG 0.407098 7_3:+52429217 Msa1109080:CDS
ACCCAACTTCCCATGCTTCA+AGG 0.422458 7_3:+52429926 Msa1109080:CDS
GAATCTAGAGCTGAGTTCTA+TGG 0.429313 7_3:+52430516 Msa1109080:CDS
CAAATCAAACATCATCATAT+AGG 0.434083 7_3:+52429957 Msa1109080:CDS
TTTACAGATGTGGATCATAT+GGG 0.447788 7_3:+52430442 Msa1109080:intron
AATCATCTTATGTTTGCAAA+AGG 0.448039 7_3:+52430910 Msa1109080:CDS
TAACAGTGTTGGCTGATCAT+AGG 0.450325 7_3:+52429864 Msa1109080:intron
GAAATGAGATCTTGTGCTCT+TGG 0.453092 7_3:-52430711 None:intergenic
TAATAGCAGCATCAATATCC+AGG 0.455941 7_3:+52430560 Msa1109080:CDS
AGAAAACGAAAATGAAGATC+AGG 0.462194 7_3:-52429196 None:intergenic
CCAACGTAGCCTAGGCAACT+TGG 0.470061 7_3:-52429170 None:intergenic
AGCCTTGAAGCATGGGAAGT+TGG 0.470813 7_3:-52429928 None:intergenic
GGAGTATAGCCTTGAAGCAT+GGG 0.488714 7_3:-52429935 None:intergenic
ATGAGAGAGGAAGAAACATA+TGG 0.490280 7_3:+52428983 Msa1109080:CDS
TTCAAATATGGATCTTGAGT+TGG 0.495575 7_3:+52430791 Msa1109080:CDS
CATGCTGTGCAAAGACTTGG+TGG 0.512111 7_3:+52429220 Msa1109080:CDS
TGGAGTATAGCCTTGAAGCA+TGG 0.512500 7_3:-52429936 None:intergenic
GGCAACTTGGATCTAACATA+AGG 0.518664 7_3:-52429157 None:intergenic
ATGTTAGATCCAAGTTGCCT+AGG 0.523365 7_3:+52429161 Msa1109080:CDS
AGTTCTAAGGAGCAAGAGAA+AGG 0.525178 7_3:+52430951 Msa1109080:CDS
GTGTAGAAGCTTGAAAGTTG+TGG 0.545562 7_3:+52428941 Msa1109080:five_prime_UTR
AAAGTAGTTGACACAAATCA+AGG 0.545661 7_3:+52429738 Msa1109080:CDS
TGGTGATCATAAATGTATAG+AGG 0.550152 7_3:+52430845 Msa1109080:CDS
TTTGGAAAATACTATGACCC+TGG 0.552012 7_3:-52430578 None:intergenic
AGAGATTTCTAAATTCTATG+TGG 0.554216 7_3:+52428760 None:intergenic
TCAGGAGTCCAACGTAGCCT+AGG 0.559435 7_3:-52429178 None:intergenic
CCAAGTTGCCTAGGCTACGT+TGG 0.561524 7_3:+52429170 Msa1109080:CDS
TCTTGCCATGTATGAAAACA+TGG 0.579727 7_3:+52430473 Msa1109080:CDS
TTGACATATATATAGATCAA+AGG 0.580822 7_3:+52428915 Msa1109080:five_prime_UTR
CATAGGCTTCTTGTAGACAA+TGG 0.581433 7_3:+52429881 Msa1109080:CDS
CTAACATAAGGCCTCACTGA+TGG 0.585574 7_3:-52429145 None:intergenic
TTACAGATGTGGATCATATG+GGG 0.594097 7_3:+52430443 Msa1109080:intron
TATGCTAAATTACTCGAAGG+AGG 0.598837 7_3:+52428784 Msa1109080:five_prime_UTR
ATATATATGTCAATTATTGG+TGG 0.604611 7_3:-52428905 None:intergenic
AAATTAAATTCAAGGAGCAA+TGG 0.605129 7_3:+52430825 Msa1109080:CDS
TAACTTGCCTGAAAATCAAG+AGG 0.607982 7_3:+52430740 Msa1109080:CDS
ATTCATGGCCACAAAATGAG+AGG 0.620365 7_3:-52430662 None:intergenic
GATGTGCAAAAGAACAACAA+TGG 0.621747 7_3:+52429073 Msa1109080:CDS
AATAGCAGCATCAATATCCA+GGG 0.637864 7_3:+52430561 Msa1109080:CDS
TATGATTGTGAAATTAGTGA+AGG 0.638841 7_3:+52429043 Msa1109080:CDS
ATATGGATCAGAATGTTCCA+AGG 0.643313 7_3:+52429000 Msa1109080:CDS
ATGCTAAATTACTCGAAGGA+GGG 0.643688 7_3:+52428785 Msa1109080:five_prime_UTR
GTGCAAAAGAACAACAATGG+AGG 0.658548 7_3:+52429076 Msa1109080:CDS
TAGCTAGATGAATATGAGAG+AGG 0.659511 7_3:+52428970 Msa1109080:exon
GGATATGCTAAATTACTCGA+AGG 0.659879 7_3:+52428781 Msa1109080:five_prime_UTR
ATGCTGTGCAAAGACTTGGT+GGG 0.679037 7_3:+52429221 Msa1109080:CDS
AGGAGGGTGAACAATAGGAG+AGG 0.694351 7_3:+52428801 Msa1109080:five_prime_UTR
GTGAGAAGAAACCATCAGTG+AGG 0.735513 7_3:+52429134 Msa1109080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTAATTTTATTTTT+TGG - chr7_3:52430259-52430278 None:intergenic 0.0%
!!! ATTTTTTTAATTTTATTTTT+TGG - chr7_3:52430259-52430278 None:intergenic 0.0%
!! AAATATTTCATTTCATCAAT+TGG + chr7_3:52428872-52428891 Msa1109080:five_prime_UTR 15.0%
!! TCTATATATATGTCAATTAT+TGG - chr7_3:52428911-52428930 None:intergenic 15.0%
!! TAAAAAGTCATAGATAAATA+TGG + chr7_3:52429605-52429624 Msa1109080:intron 15.0%
!! AATAAGTGATTACATAATTA+GGG + chr7_3:52429799-52429818 Msa1109080:intron 15.0%
!!! TGAATTAACCATTTTTTTTA+TGG + chr7_3:52429995-52430014 Msa1109080:intron 15.0%
!! TATCACTAAAATTAAATTCA+AGG + chr7_3:52430817-52430836 Msa1109080:CDS 15.0%
!! AAATATTTCATTTCATCAAT+TGG + chr7_3:52428872-52428891 Msa1109080:five_prime_UTR 15.0%
!! TCTATATATATGTCAATTAT+TGG - chr7_3:52428911-52428930 None:intergenic 15.0%
!! TAAAAAGTCATAGATAAATA+TGG + chr7_3:52429605-52429624 Msa1109080:intron 15.0%
!! AATAAGTGATTACATAATTA+GGG + chr7_3:52429799-52429818 Msa1109080:intron 15.0%
!!! TGAATTAACCATTTTTTTTA+TGG + chr7_3:52429995-52430014 Msa1109080:intron 15.0%
!! TATCACTAAAATTAAATTCA+AGG + chr7_3:52430817-52430836 Msa1109080:CDS 15.0%
!! GAGGTATATAGATATATTTA+AGG + chr7_3:52428820-52428839 Msa1109080:five_prime_UTR 20.0%
!! ATATATATGTCAATTATTGG+TGG - chr7_3:52428908-52428927 None:intergenic 20.0%
!! TTGACATATATATAGATCAA+AGG + chr7_3:52428915-52428934 Msa1109080:five_prime_UTR 20.0%
!! GAAAAATTGAAATCTAGAAA+AGG - chr7_3:52429384-52429403 None:intergenic 20.0%
!!! TCTAGATTTCAATTTTTCAT+AGG + chr7_3:52429386-52429405 Msa1109080:intron 20.0%
!!! CTAGATTTCAATTTTTCATA+GGG + chr7_3:52429387-52429406 Msa1109080:intron 20.0%
!!! TAGATTTCAATTTTTCATAG+GGG + chr7_3:52429388-52429407 Msa1109080:intron 20.0%
!! CAATAAGTGATTACATAATT+AGG + chr7_3:52429798-52429817 Msa1109080:intron 20.0%
!!! AAGACCTTTTTTTATTCATA+GGG + chr7_3:52430147-52430166 Msa1109080:intron 20.0%
!! AGTTATCAAAACAAATACAA+AGG + chr7_3:52430206-52430225 Msa1109080:intron 20.0%
!! GTTATCAAAACAAATACAAA+GGG + chr7_3:52430207-52430226 Msa1109080:intron 20.0%
!!! TTTTATTTTTTGGTCAAGTT+CGG - chr7_3:52430249-52430268 None:intergenic 20.0%
!!! TTTTAAACGTAAATGACTTA+AGG - chr7_3:52430334-52430353 None:intergenic 20.0%
!!! TTTTCTTTTTTTTACAGATG+TGG + chr7_3:52430432-52430451 Msa1109080:intron 20.0%
!! GAGGTATATAGATATATTTA+AGG + chr7_3:52428820-52428839 Msa1109080:five_prime_UTR 20.0%
!! ATATATATGTCAATTATTGG+TGG - chr7_3:52428908-52428927 None:intergenic 20.0%
!! TTGACATATATATAGATCAA+AGG + chr7_3:52428915-52428934 Msa1109080:five_prime_UTR 20.0%
!! GAAAAATTGAAATCTAGAAA+AGG - chr7_3:52429384-52429403 None:intergenic 20.0%
!!! TCTAGATTTCAATTTTTCAT+AGG + chr7_3:52429386-52429405 Msa1109080:intron 20.0%
!!! CTAGATTTCAATTTTTCATA+GGG + chr7_3:52429387-52429406 Msa1109080:intron 20.0%
!!! TAGATTTCAATTTTTCATAG+GGG + chr7_3:52429388-52429407 Msa1109080:intron 20.0%
!! CAATAAGTGATTACATAATT+AGG + chr7_3:52429798-52429817 Msa1109080:intron 20.0%
!!! AAGACCTTTTTTTATTCATA+GGG + chr7_3:52430147-52430166 Msa1109080:intron 20.0%
!! AGTTATCAAAACAAATACAA+AGG + chr7_3:52430206-52430225 Msa1109080:intron 20.0%
!! GTTATCAAAACAAATACAAA+GGG + chr7_3:52430207-52430226 Msa1109080:intron 20.0%
!!! TTTTATTTTTTGGTCAAGTT+CGG - chr7_3:52430249-52430268 None:intergenic 20.0%
!!! TTTTAAACGTAAATGACTTA+AGG - chr7_3:52430334-52430353 None:intergenic 20.0%
!!! TTTTCTTTTTTTTACAGATG+TGG + chr7_3:52430432-52430451 Msa1109080:intron 20.0%
! TATGATTGTGAAATTAGTGA+AGG + chr7_3:52429043-52429062 Msa1109080:CDS 25.0%
! ATACATATATGTTATGTGTG+TGG - chr7_3:52429261-52429280 None:intergenic 25.0%
!! TTAATGATTTTCTTGTGTGT+AGG + chr7_3:52429505-52429524 Msa1109080:intron 25.0%
!! ATCAATTGAAGAACCAATTT+TGG - chr7_3:52429538-52429557 None:intergenic 25.0%
! CTTCAATTGATGAACATAAA+AGG + chr7_3:52429547-52429566 Msa1109080:CDS 25.0%
! TTGTATATATGTAACAGTGT+TGG + chr7_3:52429853-52429872 Msa1109080:intron 25.0%
!! CTATATGATGATGTTTGATT+TGG - chr7_3:52429959-52429978 None:intergenic 25.0%
! CAAATCAAACATCATCATAT+AGG + chr7_3:52429957-52429976 Msa1109080:CDS 25.0%
! AGCATTCTCCATAAAAAAAA+TGG - chr7_3:52430006-52430025 None:intergenic 25.0%
!!! CAAGACCTTTTTTTATTCAT+AGG + chr7_3:52430146-52430165 Msa1109080:intron 25.0%
! TGATCCCTATGAATAAAAAA+AGG - chr7_3:52430154-52430173 None:intergenic 25.0%
! GTAAATGACTTAAGGAAATT+TGG - chr7_3:52430326-52430345 None:intergenic 25.0%
! TGTTATTGTCTTAGAATTGA+AGG + chr7_3:52430407-52430426 Msa1109080:intron 25.0%
! TAAAATTGGATGAATCCATT+TGG - chr7_3:52430599-52430618 None:intergenic 25.0%
!!! TGTTGATAGTTCTCTAAAAT+TGG - chr7_3:52430613-52430632 None:intergenic 25.0%
! AATGAGAGGAAATTATCATT+TGG - chr7_3:52430651-52430670 None:intergenic 25.0%
! GAAAAGAAAAGCTTCAAATA+TGG + chr7_3:52430779-52430798 Msa1109080:CDS 25.0%
! AAATTAAATTCAAGGAGCAA+TGG + chr7_3:52430825-52430844 Msa1109080:CDS 25.0%
! AATCATCTTATGTTTGCAAA+AGG + chr7_3:52430910-52430929 Msa1109080:CDS 25.0%
! TATGATTGTGAAATTAGTGA+AGG + chr7_3:52429043-52429062 Msa1109080:CDS 25.0%
! ATACATATATGTTATGTGTG+TGG - chr7_3:52429261-52429280 None:intergenic 25.0%
!! TTAATGATTTTCTTGTGTGT+AGG + chr7_3:52429505-52429524 Msa1109080:intron 25.0%
!! ATCAATTGAAGAACCAATTT+TGG - chr7_3:52429538-52429557 None:intergenic 25.0%
! CTTCAATTGATGAACATAAA+AGG + chr7_3:52429547-52429566 Msa1109080:CDS 25.0%
! TTGTATATATGTAACAGTGT+TGG + chr7_3:52429853-52429872 Msa1109080:intron 25.0%
!! CTATATGATGATGTTTGATT+TGG - chr7_3:52429959-52429978 None:intergenic 25.0%
! CAAATCAAACATCATCATAT+AGG + chr7_3:52429957-52429976 Msa1109080:CDS 25.0%
! AGCATTCTCCATAAAAAAAA+TGG - chr7_3:52430006-52430025 None:intergenic 25.0%
!!! CAAGACCTTTTTTTATTCAT+AGG + chr7_3:52430146-52430165 Msa1109080:intron 25.0%
! TGATCCCTATGAATAAAAAA+AGG - chr7_3:52430154-52430173 None:intergenic 25.0%
! GTAAATGACTTAAGGAAATT+TGG - chr7_3:52430326-52430345 None:intergenic 25.0%
! TGTTATTGTCTTAGAATTGA+AGG + chr7_3:52430407-52430426 Msa1109080:intron 25.0%
! TAAAATTGGATGAATCCATT+TGG - chr7_3:52430599-52430618 None:intergenic 25.0%
!!! TGTTGATAGTTCTCTAAAAT+TGG - chr7_3:52430613-52430632 None:intergenic 25.0%
! AATGAGAGGAAATTATCATT+TGG - chr7_3:52430651-52430670 None:intergenic 25.0%
! GAAAAGAAAAGCTTCAAATA+TGG + chr7_3:52430779-52430798 Msa1109080:CDS 25.0%
! AAATTAAATTCAAGGAGCAA+TGG + chr7_3:52430825-52430844 Msa1109080:CDS 25.0%
! AATCATCTTATGTTTGCAAA+AGG + chr7_3:52430910-52430929 Msa1109080:CDS 25.0%
TCTCATATTCATCTAGCTAT+AGG - chr7_3:52428969-52428988 None:intergenic 30.0%
ATTAATTGAAACACTTGCCT+TGG - chr7_3:52429020-52429039 None:intergenic 30.0%
AGAAAACGAAAATGAAGATC+AGG - chr7_3:52429199-52429218 None:intergenic 30.0%
GTAACCTAGAATTTACAACA+TGG + chr7_3:52429315-52429334 Msa1109080:intron 30.0%
ATCTATGTGTTTGATCATCA+TGG - chr7_3:52429347-52429366 None:intergenic 30.0%
TTCAATATCAAGTTAGTCCT+AGG + chr7_3:52429413-52429432 Msa1109080:intron 30.0%
AAAGCTAGCTAGCTATATAT+AGG - chr7_3:52429637-52429656 None:intergenic 30.0%
AAAGTAGTTGACACAAATCA+AGG + chr7_3:52429738-52429757 Msa1109080:CDS 30.0%
ACACAAATCAAGGTACAATA+AGG + chr7_3:52429748-52429767 Msa1109080:intron 30.0%
TTCTTATCGAAAAACGAGAA+GGG - chr7_3:52430183-52430202 None:intergenic 30.0%
ATTCTTATCGAAAAACGAGA+AGG - chr7_3:52430184-52430203 None:intergenic 30.0%
! AAGGAAATTTGGAACAAAGT+TGG - chr7_3:52430315-52430334 None:intergenic 30.0%
! CGTTTAAAATTGTAACCTCA+AGG + chr7_3:52430345-52430364 Msa1109080:intron 30.0%
! GATTTGAAGTTTAAACCTTG+AGG - chr7_3:52430363-52430382 None:intergenic 30.0%
! AGTAATTTTACAACTGTCGT+TGG - chr7_3:52430388-52430407 None:intergenic 30.0%
! TTTTACAGATGTGGATCATA+TGG + chr7_3:52430441-52430460 Msa1109080:intron 30.0%
TTTACAGATGTGGATCATAT+GGG + chr7_3:52430442-52430461 Msa1109080:intron 30.0%
! TTGTACCATGTTTTCATACA+TGG - chr7_3:52430481-52430500 None:intergenic 30.0%
GATATTGATGCTGCTATTAT+TGG - chr7_3:52430559-52430578 None:intergenic 30.0%
! GGAAATTATCATTTGGTTCA+TGG - chr7_3:52430644-52430663 None:intergenic 30.0%
! GATAATTTCCTCTCATTTTG+TGG + chr7_3:52430654-52430673 Msa1109080:CDS 30.0%
GATCATCTCTTAAAGATTCA+TGG - chr7_3:52430680-52430699 None:intergenic 30.0%
TTCAAATATGGATCTTGAGT+TGG + chr7_3:52430791-52430810 Msa1109080:CDS 30.0%
TGGTGATCATAAATGTATAG+AGG + chr7_3:52430845-52430864 Msa1109080:CDS 30.0%
! AGAAGAACAAGATAGTTCTA+AGG + chr7_3:52430938-52430957 Msa1109080:CDS 30.0%
GAAAGGAGTCAATATTTCTT+TGG + chr7_3:52430968-52430987 Msa1109080:CDS 30.0%
TCTCATATTCATCTAGCTAT+AGG - chr7_3:52428969-52428988 None:intergenic 30.0%
ATTAATTGAAACACTTGCCT+TGG - chr7_3:52429020-52429039 None:intergenic 30.0%
AGAAAACGAAAATGAAGATC+AGG - chr7_3:52429199-52429218 None:intergenic 30.0%
GTAACCTAGAATTTACAACA+TGG + chr7_3:52429315-52429334 Msa1109080:intron 30.0%
ATCTATGTGTTTGATCATCA+TGG - chr7_3:52429347-52429366 None:intergenic 30.0%
TTCAATATCAAGTTAGTCCT+AGG + chr7_3:52429413-52429432 Msa1109080:intron 30.0%
AAAGCTAGCTAGCTATATAT+AGG - chr7_3:52429637-52429656 None:intergenic 30.0%
AAAGTAGTTGACACAAATCA+AGG + chr7_3:52429738-52429757 Msa1109080:CDS 30.0%
ACACAAATCAAGGTACAATA+AGG + chr7_3:52429748-52429767 Msa1109080:intron 30.0%
TTCTTATCGAAAAACGAGAA+GGG - chr7_3:52430183-52430202 None:intergenic 30.0%
ATTCTTATCGAAAAACGAGA+AGG - chr7_3:52430184-52430203 None:intergenic 30.0%
! AAGGAAATTTGGAACAAAGT+TGG - chr7_3:52430315-52430334 None:intergenic 30.0%
! CGTTTAAAATTGTAACCTCA+AGG + chr7_3:52430345-52430364 Msa1109080:intron 30.0%
! GATTTGAAGTTTAAACCTTG+AGG - chr7_3:52430363-52430382 None:intergenic 30.0%
! AGTAATTTTACAACTGTCGT+TGG - chr7_3:52430388-52430407 None:intergenic 30.0%
! TTTTACAGATGTGGATCATA+TGG + chr7_3:52430441-52430460 Msa1109080:intron 30.0%
TTTACAGATGTGGATCATAT+GGG + chr7_3:52430442-52430461 Msa1109080:intron 30.0%
! TTGTACCATGTTTTCATACA+TGG - chr7_3:52430481-52430500 None:intergenic 30.0%
GATATTGATGCTGCTATTAT+TGG - chr7_3:52430559-52430578 None:intergenic 30.0%
! GGAAATTATCATTTGGTTCA+TGG - chr7_3:52430644-52430663 None:intergenic 30.0%
! GATAATTTCCTCTCATTTTG+TGG + chr7_3:52430654-52430673 Msa1109080:CDS 30.0%
GATCATCTCTTAAAGATTCA+TGG - chr7_3:52430680-52430699 None:intergenic 30.0%
TTCAAATATGGATCTTGAGT+TGG + chr7_3:52430791-52430810 Msa1109080:CDS 30.0%
TGGTGATCATAAATGTATAG+AGG + chr7_3:52430845-52430864 Msa1109080:CDS 30.0%
! AGAAGAACAAGATAGTTCTA+AGG + chr7_3:52430938-52430957 Msa1109080:CDS 30.0%
GAAAGGAGTCAATATTTCTT+TGG + chr7_3:52430968-52430987 Msa1109080:CDS 30.0%
GGATATGCTAAATTACTCGA+AGG + chr7_3:52428781-52428800 Msa1109080:five_prime_UTR 35.0%
TATGCTAAATTACTCGAAGG+AGG + chr7_3:52428784-52428803 Msa1109080:five_prime_UTR 35.0%
ATGCTAAATTACTCGAAGGA+GGG + chr7_3:52428785-52428804 Msa1109080:five_prime_UTR 35.0%
TAGCTAGATGAATATGAGAG+AGG + chr7_3:52428970-52428989 Msa1109080:exon 35.0%
ATGAGAGAGGAAGAAACATA+TGG + chr7_3:52428983-52429002 Msa1109080:CDS 35.0%
ATATGGATCAGAATGTTCCA+AGG + chr7_3:52429000-52429019 Msa1109080:CDS 35.0%
GATGTGCAAAAGAACAACAA+TGG + chr7_3:52429073-52429092 Msa1109080:CDS 35.0%
CACACCATGTTGTAAATTCT+AGG - chr7_3:52429322-52429341 None:intergenic 35.0%
CTAGAATTTACAACATGGTG+TGG + chr7_3:52429320-52429339 Msa1109080:intron 35.0%
ATATCAAGTTAGTCCTAGGT+AGG + chr7_3:52429417-52429436 Msa1109080:intron 35.0%
TCATGTGAAGAGTCATTTAC+AGG + chr7_3:52429582-52429601 Msa1109080:CDS 35.0%
CTTTCTTGCTTCTATACATC+TGG - chr7_3:52429722-52429741 None:intergenic 35.0%
! AATTTTACAACTGTCGTTGG+AGG - chr7_3:52430385-52430404 None:intergenic 35.0%
TTACAGATGTGGATCATATG+GGG + chr7_3:52430443-52430462 Msa1109080:intron 35.0%
TCTTGCCATGTATGAAAACA+TGG + chr7_3:52430473-52430492 Msa1109080:CDS 35.0%
TAATAGCAGCATCAATATCC+AGG + chr7_3:52430560-52430579 Msa1109080:CDS 35.0%
AATAGCAGCATCAATATCCA+GGG + chr7_3:52430561-52430580 Msa1109080:CDS 35.0%
TTTGGAAAATACTATGACCC+TGG - chr7_3:52430581-52430600 None:intergenic 35.0%
! GGGTCATAGTATTTTCCAAA+TGG + chr7_3:52430581-52430600 Msa1109080:CDS 35.0%
! TAACTTGCCTGAAAATCAAG+AGG + chr7_3:52430740-52430759 Msa1109080:CDS 35.0%
! AGTTCTTCCTCTTGATTTTC+AGG - chr7_3:52430750-52430769 None:intergenic 35.0%
GGATATGCTAAATTACTCGA+AGG + chr7_3:52428781-52428800 Msa1109080:five_prime_UTR 35.0%
TATGCTAAATTACTCGAAGG+AGG + chr7_3:52428784-52428803 Msa1109080:five_prime_UTR 35.0%
ATGCTAAATTACTCGAAGGA+GGG + chr7_3:52428785-52428804 Msa1109080:five_prime_UTR 35.0%
TAGCTAGATGAATATGAGAG+AGG + chr7_3:52428970-52428989 Msa1109080:exon 35.0%
ATGAGAGAGGAAGAAACATA+TGG + chr7_3:52428983-52429002 Msa1109080:CDS 35.0%
ATATGGATCAGAATGTTCCA+AGG + chr7_3:52429000-52429019 Msa1109080:CDS 35.0%
GATGTGCAAAAGAACAACAA+TGG + chr7_3:52429073-52429092 Msa1109080:CDS 35.0%
CACACCATGTTGTAAATTCT+AGG - chr7_3:52429322-52429341 None:intergenic 35.0%
CTAGAATTTACAACATGGTG+TGG + chr7_3:52429320-52429339 Msa1109080:intron 35.0%
ATATCAAGTTAGTCCTAGGT+AGG + chr7_3:52429417-52429436 Msa1109080:intron 35.0%
TCATGTGAAGAGTCATTTAC+AGG + chr7_3:52429582-52429601 Msa1109080:CDS 35.0%
CTTTCTTGCTTCTATACATC+TGG - chr7_3:52429722-52429741 None:intergenic 35.0%
! AATTTTACAACTGTCGTTGG+AGG - chr7_3:52430385-52430404 None:intergenic 35.0%
TTACAGATGTGGATCATATG+GGG + chr7_3:52430443-52430462 Msa1109080:intron 35.0%
TCTTGCCATGTATGAAAACA+TGG + chr7_3:52430473-52430492 Msa1109080:CDS 35.0%
TAATAGCAGCATCAATATCC+AGG + chr7_3:52430560-52430579 Msa1109080:CDS 35.0%
AATAGCAGCATCAATATCCA+GGG + chr7_3:52430561-52430580 Msa1109080:CDS 35.0%
TTTGGAAAATACTATGACCC+TGG - chr7_3:52430581-52430600 None:intergenic 35.0%
! GGGTCATAGTATTTTCCAAA+TGG + chr7_3:52430581-52430600 Msa1109080:CDS 35.0%
! TAACTTGCCTGAAAATCAAG+AGG + chr7_3:52430740-52430759 Msa1109080:CDS 35.0%
! AGTTCTTCCTCTTGATTTTC+AGG - chr7_3:52430750-52430769 None:intergenic 35.0%
GTGTAGAAGCTTGAAAGTTG+TGG + chr7_3:52428941-52428960 Msa1109080:five_prime_UTR 40.0%
GTGCAAAAGAACAACAATGG+AGG + chr7_3:52429076-52429095 Msa1109080:CDS 40.0%
GGCAACTTGGATCTAACATA+AGG - chr7_3:52429160-52429179 None:intergenic 40.0%
ATGTTAGATCCAAGTTGCCT+AGG + chr7_3:52429161-52429180 Msa1109080:CDS 40.0%
TTGAATTGACCTACCTACCT+AGG - chr7_3:52429433-52429452 None:intergenic 40.0%
TGTAGGAGCAACTCCAAAAT+TGG + chr7_3:52429522-52429541 Msa1109080:intron 40.0%
!! TAACAGTGTTGGCTGATCAT+AGG + chr7_3:52429864-52429883 Msa1109080:intron 40.0%
CATAGGCTTCTTGTAGACAA+TGG + chr7_3:52429881-52429900 Msa1109080:CDS 40.0%
ATCTTTAACCATTACCCCTG+AGG + chr7_3:52430112-52430131 Msa1109080:intron 40.0%
TCTTTAACCATTACCCCTGA+GGG + chr7_3:52430113-52430132 Msa1109080:intron 40.0%
! GAATCTAGAGCTGAGTTCTA+TGG + chr7_3:52430516-52430535 Msa1109080:CDS 40.0%
ATTCATGGCCACAAAATGAG+AGG - chr7_3:52430665-52430684 None:intergenic 40.0%
GAAATGAGATCTTGTGCTCT+TGG - chr7_3:52430714-52430733 None:intergenic 40.0%
!! AGTTCTAAGGAGCAAGAGAA+AGG + chr7_3:52430951-52430970 Msa1109080:CDS 40.0%
GTGTAGAAGCTTGAAAGTTG+TGG + chr7_3:52428941-52428960 Msa1109080:five_prime_UTR 40.0%
GTGCAAAAGAACAACAATGG+AGG + chr7_3:52429076-52429095 Msa1109080:CDS 40.0%
GGCAACTTGGATCTAACATA+AGG - chr7_3:52429160-52429179 None:intergenic 40.0%
ATGTTAGATCCAAGTTGCCT+AGG + chr7_3:52429161-52429180 Msa1109080:CDS 40.0%
TTGAATTGACCTACCTACCT+AGG - chr7_3:52429433-52429452 None:intergenic 40.0%
TGTAGGAGCAACTCCAAAAT+TGG + chr7_3:52429522-52429541 Msa1109080:intron 40.0%
!! TAACAGTGTTGGCTGATCAT+AGG + chr7_3:52429864-52429883 Msa1109080:intron 40.0%
CATAGGCTTCTTGTAGACAA+TGG + chr7_3:52429881-52429900 Msa1109080:CDS 40.0%
ATCTTTAACCATTACCCCTG+AGG + chr7_3:52430112-52430131 Msa1109080:intron 40.0%
TCTTTAACCATTACCCCTGA+GGG + chr7_3:52430113-52430132 Msa1109080:intron 40.0%
! GAATCTAGAGCTGAGTTCTA+TGG + chr7_3:52430516-52430535 Msa1109080:CDS 40.0%
ATTCATGGCCACAAAATGAG+AGG - chr7_3:52430665-52430684 None:intergenic 40.0%
GAAATGAGATCTTGTGCTCT+TGG - chr7_3:52430714-52430733 None:intergenic 40.0%
!! AGTTCTAAGGAGCAAGAGAA+AGG + chr7_3:52430951-52430970 Msa1109080:CDS 40.0%
GTGAGAAGAAACCATCAGTG+AGG + chr7_3:52429134-52429153 Msa1109080:CDS 45.0%
CTAACATAAGGCCTCACTGA+TGG - chr7_3:52429148-52429167 None:intergenic 45.0%
CTTCATGCTGTGCAAAGACT+TGG + chr7_3:52429217-52429236 Msa1109080:CDS 45.0%
! ATGCTGTGCAAAGACTTGGT+GGG + chr7_3:52429221-52429240 Msa1109080:CDS 45.0%
CAAGTTAGTCCTAGGTAGGT+AGG + chr7_3:52429421-52429440 Msa1109080:intron 45.0%
! GGAGTATAGCCTTGAAGCAT+GGG - chr7_3:52429938-52429957 None:intergenic 45.0%
! TGGAGTATAGCCTTGAAGCA+TGG - chr7_3:52429939-52429958 None:intergenic 45.0%
AATGCTAACTAGTGCCCCAA+GGG + chr7_3:52430020-52430039 Msa1109080:intron 45.0%
TTAACCAATGCATGCCCTTG+GGG - chr7_3:52430037-52430056 None:intergenic 45.0%
CTTAACCAATGCATGCCCTT+GGG - chr7_3:52430038-52430057 None:intergenic 45.0%
GTGAGAAGAAACCATCAGTG+AGG + chr7_3:52429134-52429153 Msa1109080:CDS 45.0%
CTAACATAAGGCCTCACTGA+TGG - chr7_3:52429148-52429167 None:intergenic 45.0%
CTTCATGCTGTGCAAAGACT+TGG + chr7_3:52429217-52429236 Msa1109080:CDS 45.0%
! ATGCTGTGCAAAGACTTGGT+GGG + chr7_3:52429221-52429240 Msa1109080:CDS 45.0%
CAAGTTAGTCCTAGGTAGGT+AGG + chr7_3:52429421-52429440 Msa1109080:intron 45.0%
! GGAGTATAGCCTTGAAGCAT+GGG - chr7_3:52429938-52429957 None:intergenic 45.0%
! TGGAGTATAGCCTTGAAGCA+TGG - chr7_3:52429939-52429958 None:intergenic 45.0%
AATGCTAACTAGTGCCCCAA+GGG + chr7_3:52430020-52430039 Msa1109080:intron 45.0%
TTAACCAATGCATGCCCTTG+GGG - chr7_3:52430037-52430056 None:intergenic 45.0%
CTTAACCAATGCATGCCCTT+GGG - chr7_3:52430038-52430057 None:intergenic 45.0%
CTCGAAGGAGGGTGAACAAT+AGG + chr7_3:52428796-52428815 Msa1109080:five_prime_UTR 50.0%
AGGAGGGTGAACAATAGGAG+AGG + chr7_3:52428801-52428820 Msa1109080:five_prime_UTR 50.0%
CATGCTGTGCAAAGACTTGG+TGG + chr7_3:52429220-52429239 Msa1109080:CDS 50.0%
ACCCAACTTCCCATGCTTCA+AGG + chr7_3:52429926-52429945 Msa1109080:CDS 50.0%
GCCTTGAAGCATGGGAAGTT+GGG - chr7_3:52429930-52429949 None:intergenic 50.0%
AGCCTTGAAGCATGGGAAGT+TGG - chr7_3:52429931-52429950 None:intergenic 50.0%
GAATGCTAACTAGTGCCCCA+AGG + chr7_3:52430019-52430038 Msa1109080:intron 50.0%
GCTTAACCAATGCATGCCCT+TGG - chr7_3:52430039-52430058 None:intergenic 50.0%
CTCGAAGGAGGGTGAACAAT+AGG + chr7_3:52428796-52428815 Msa1109080:five_prime_UTR 50.0%
AGGAGGGTGAACAATAGGAG+AGG + chr7_3:52428801-52428820 Msa1109080:five_prime_UTR 50.0%
CATGCTGTGCAAAGACTTGG+TGG + chr7_3:52429220-52429239 Msa1109080:CDS 50.0%
ACCCAACTTCCCATGCTTCA+AGG + chr7_3:52429926-52429945 Msa1109080:CDS 50.0%
GCCTTGAAGCATGGGAAGTT+GGG - chr7_3:52429930-52429949 None:intergenic 50.0%
AGCCTTGAAGCATGGGAAGT+TGG - chr7_3:52429931-52429950 None:intergenic 50.0%
GAATGCTAACTAGTGCCCCA+AGG + chr7_3:52430019-52430038 Msa1109080:intron 50.0%
GCTTAACCAATGCATGCCCT+TGG - chr7_3:52430039-52430058 None:intergenic 50.0%
CCAACGTAGCCTAGGCAACT+TGG - chr7_3:52429173-52429192 None:intergenic 55.0%
CCAAGTTGCCTAGGCTACGT+TGG + chr7_3:52429170-52429189 Msa1109080:CDS 55.0%
TCAGGAGTCCAACGTAGCCT+AGG - chr7_3:52429181-52429200 None:intergenic 55.0%
TTGTTAACCAGCGCCCTCAG+GGG - chr7_3:52430129-52430148 None:intergenic 55.0%
CTTGTTAACCAGCGCCCTCA+GGG - chr7_3:52430130-52430149 None:intergenic 55.0%
TCTTGTTAACCAGCGCCCTC+AGG - chr7_3:52430131-52430150 None:intergenic 55.0%
CCAACGTAGCCTAGGCAACT+TGG - chr7_3:52429173-52429192 None:intergenic 55.0%
CCAAGTTGCCTAGGCTACGT+TGG + chr7_3:52429170-52429189 Msa1109080:CDS 55.0%
TCAGGAGTCCAACGTAGCCT+AGG - chr7_3:52429181-52429200 None:intergenic 55.0%
TTGTTAACCAGCGCCCTCAG+GGG - chr7_3:52430129-52430148 None:intergenic 55.0%
CTTGTTAACCAGCGCCCTCA+GGG - chr7_3:52430130-52430149 None:intergenic 55.0%
TCTTGTTAACCAGCGCCCTC+AGG - chr7_3:52430131-52430150 None:intergenic 55.0%
! AGTGCCCCAAGGGCATGCAT+TGG + chr7_3:52430030-52430049 Msa1109080:intron 60.0%
! AGTGCCCCAAGGGCATGCAT+TGG + chr7_3:52430030-52430049 Msa1109080:intron 60.0%
! ACCATTACCCCTGAGGGCGC+TGG + chr7_3:52430119-52430138 Msa1109080:intron 65.0%
ACCAGCGCCCTCAGGGGTAA+TGG - chr7_3:52430123-52430142 None:intergenic 65.0%
! ACCATTACCCCTGAGGGCGC+TGG + chr7_3:52430119-52430138 Msa1109080:intron 65.0%
ACCAGCGCCCTCAGGGGTAA+TGG - chr7_3:52430123-52430142 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 52428768 52431004 52428768 ID=Msa1109080;Name=Msa1109080
chr7_3 mRNA 52428768 52431004 52428768 ID=Msa1109080-mRNA-1;Parent=Msa1109080;Name=Msa1109080-mRNA-1;_AED=0.01;_eAED=0.02;_QI=209|1|0.8|1|1|1|5|0|350
chr7_3 exon 52428768 52429250 52428768 ID=Msa1109080-mRNA-1:exon:11004;Parent=Msa1109080-mRNA-1
chr7_3 exon 52429527 52429603 52429527 ID=Msa1109080-mRNA-1:exon:11005;Parent=Msa1109080-mRNA-1
chr7_3 exon 52429723 52429759 52429723 ID=Msa1109080-mRNA-1:exon:11006;Parent=Msa1109080-mRNA-1
chr7_3 exon 52429870 52429978 52429870 ID=Msa1109080-mRNA-1:exon:11007;Parent=Msa1109080-mRNA-1
chr7_3 exon 52430449 52431004 52430449 ID=Msa1109080-mRNA-1:exon:11008;Parent=Msa1109080-mRNA-1
chr7_3 five_prime_UTR 52428768 52428976 52428768 ID=Msa1109080-mRNA-1:five_prime_utr;Parent=Msa1109080-mRNA-1
chr7_3 CDS 52428977 52429250 52428977 ID=Msa1109080-mRNA-1:cds;Parent=Msa1109080-mRNA-1
chr7_3 CDS 52429527 52429603 52429527 ID=Msa1109080-mRNA-1:cds;Parent=Msa1109080-mRNA-1
chr7_3 CDS 52429723 52429759 52429723 ID=Msa1109080-mRNA-1:cds;Parent=Msa1109080-mRNA-1
chr7_3 CDS 52429870 52429978 52429870 ID=Msa1109080-mRNA-1:cds;Parent=Msa1109080-mRNA-1
chr7_3 CDS 52430449 52431004 52430449 ID=Msa1109080-mRNA-1:cds;Parent=Msa1109080-mRNA-1
Gene Sequence

>Msa1109080

ATGAATATGAGAGAGGAAGAAACATATGGATCAGAATGTTCCAAGGCAAGTGTTTCAATTAATGAATATGATTGTGAAATTAGTGAAGGAAATGAAGATGTGCAAAAGAACAACAATGGAGGAATAAGCTCAAGCAATAGTACTATAGAAGAGAATTGTGAGAAGAAACCATCAGTGAGGCCTTATGTTAGATCCAAGTTGCCTAGGCTACGTTGGACTCCTGATCTTCATTTTCGTTTTCTTCATGCTGTGCAAAGACTTGGTGGGCAAGAGAGAGCAACTCCAAAATTGGTTCTTCAATTGATGAACATAAAAGGTTTAAGTATTGCTCATGTGAAGAGTCATTTACAGATGTATAGAAGCAAGAAAGTAGTTGACACAAATCAAGTGTTGGCTGATCATAGGCTTCTTGTAGACAATGGAGACAGAAATGTTTATAATCTCACCCAACTTCCCATGCTTCAAGGCTATACTCCAAATCAAACATCATCATATAGATGTGGATCATATGGGGATGCTTCTCTTGCCATGTATGAAAACATGGTACAAATGAGTTCAATAAGTGAATCTAGAGCTGAGTTCTATGGCAAAATGATTGAGAGAACCAATAATAGCAGCATCAATATCCAGGGTCATAGTATTTTCCAAATGGATTCATCCAATTTTAGAGAACTATCAACAACTAAAGTCCATGAACCAAATGATAATTTCCTCTCATTTTGTGGCCATGAATCTTTAAGAGATGATCTACAAGTTCAGCCAAGAGCACAAGATCTCATTTCGAACGATAACTTGCCTGAAAATCAAGAGGAAGAACTGAAGACAATGAAAAGAAAAGCTTCAAATATGGATCTTGAGTTGGATCTATCACTAAAATTAAATTCAAGGAGCAATGGTGATCATAAATGTATAGAGGAGCATGAAATTGATAGCAATTTATCACTCTCTTTGTATTCTCAATCATCTTATGTTTGCAAAAGGATGAAAGAAGAACAAGATAGTTCTAAGGAGCAAGAGAAAGGAGTCAATATTTCTTTGGATCTAACCATATGA
Protein sequence

>Msa1109080

MNMREEETYGSECSKASVSINEYDCEISEGNEDVQKNNNGGISSSNSTIEENCEKKPSVRPYVRSKLPRLRWTPDLHFRFLHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVVDTNQVLADHRLLVDNGDRNVYNLTQLPMLQGYTPNQTSSYRCGSYGDASLAMYENMVQMSSISESRAEFYGKMIERTNNSSINIQGHSIFQMDSSNFRELSTTKVHEPNDNFLSFCGHESLRDDLQVQPRAQDLISNDNLPENQEEELKTMKRKASNMDLELDLSLKLNSRSNGDHKCIEEHEIDSNLSLSLYSQSSYVCKRMKEEQDSSKEQEKGVNISLDLTI*