Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025090 | PNX99441.1 | 94.000 | 150 | 9 | 0 | 12 | 161 | 28 | 177 | 9.93e-90 | 269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025090 | sp|Q9M6N7|AMT2_ARATH | 65.132 | 152 | 51 | 2 | 12 | 161 | 324 | 475 | 4.76e-61 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025090 | A0A2K3N8R6 | 94.000 | 150 | 9 | 0 | 12 | 161 | 28 | 177 | 4.74e-90 | 269 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1025080 | Msa1025090 | 0.814456 | 1.526442e-51 | -8.615850e-47 |
| Msa1025090 | Msa1109090 | 0.839765 | 1.302422e-57 | -8.615850e-47 |
| Msa0296480 | Msa1025090 | 0.804087 | 2.555834e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025090 | MtrunA17_Chr7g0243071 | 94.667 | 150 | 8 | 0 | 12 | 161 | 338 | 487 | 7.93e-91 | 272 |
| Msa1025090 | MtrunA17_Chr4g0007611 | 80.822 | 146 | 27 | 1 | 17 | 161 | 7 | 152 | 1.68e-72 | 214 |
| Msa1025090 | MtrunA17_Chr8g0385081 | 66.667 | 141 | 42 | 1 | 12 | 147 | 344 | 484 | 3.17e-44 | 151 |
| Msa1025090 | MtrunA17_Chr1g0163571 | 46.541 | 159 | 76 | 3 | 12 | 161 | 322 | 480 | 8.88e-38 | 134 |
| Msa1025090 | MtrunA17_Chr8g0371171 | 47.020 | 151 | 67 | 4 | 12 | 155 | 159 | 303 | 1.64e-36 | 127 |
| Msa1025090 | MtrunA17_Chr7g0274111 | 41.985 | 131 | 66 | 4 | 12 | 132 | 321 | 451 | 2.44e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025090 | AT2G38290.2 | 65.132 | 152 | 51 | 2 | 12 | 161 | 208 | 359 | 3.10e-63 | 198 |
| Msa1025090 | AT2G38290.1 | 65.132 | 152 | 51 | 2 | 12 | 161 | 324 | 475 | 4.84e-62 | 198 |
Find 51 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATGCTGTGGCTGGCCTAT+TGG | 0.253905 | 7_1:+55285348 | Msa1025090:CDS |
| CATGCTGTGGCTGGCCTATT+GGG | 0.258730 | 7_1:+55285349 | Msa1025090:CDS |
| GGAGGAAGCTTATGCCCTTT+GGG | 0.268571 | 7_1:+55285618 | Msa1025090:CDS |
| GTGGCAGCAATGTTTGTTAT+TGG | 0.287336 | 7_1:+55285490 | Msa1025090:CDS |
| GGGAGGAAGCTTATGCCCTT+TGG | 0.303955 | 7_1:+55285617 | Msa1025090:CDS |
| AATTCAAGGGGTGCATTCTA+TGG | 0.355468 | 7_1:+55285433 | Msa1025090:CDS |
| GGAGTGTCACCTTATGTTAA+TGG | 0.386336 | 7_1:+55285697 | Msa1025090:CDS |
| CCAATTCCTAAAACAATTAG+TGG | 0.393680 | 7_1:+55285471 | Msa1025090:CDS |
| CCGATTTCGAGCTGCTCGTC+AGG | 0.414341 | 7_1:-55285577 | None:intergenic |
| CCTGACGAGCAGCTCGAAAT+CGG | 0.420213 | 7_1:+55285577 | Msa1025090:CDS |
| CTATTGGGTGGCCTACTAAC+AGG | 0.422381 | 7_1:+55285364 | Msa1025090:CDS |
| GCTTATGCCCTTTGGGGTGA+TGG | 0.427166 | 7_1:+55285625 | Msa1025090:CDS |
| TTAAAGGTTGATGACACTCT+TGG | 0.428223 | 7_1:+55285313 | Msa1025090:intron |
| CTGACGAGCAGCTCGAAATC+GGG | 0.432110 | 7_1:+55285578 | Msa1025090:CDS |
| AGGCATGGTTCGTTGAATAC+TGG | 0.453886 | 7_1:+55285667 | Msa1025090:CDS |
| CGGGGACGATGCGGCTCACG+GGG | 0.457266 | 7_1:+55285597 | Msa1025090:CDS |
| CTGGTAATAGTAATCTACAT+AGG | 0.472192 | 7_1:-55285405 | None:intergenic |
| CTGCAAGGAGTCCTGTTAGT+AGG | 0.485260 | 7_1:-55285375 | None:intergenic |
| ATCGGGGACGATGCGGCTCA+CGG | 0.488755 | 7_1:+55285595 | Msa1025090:CDS |
| CTGTTAGTAGGCCACCCAAT+AGG | 0.508793 | 7_1:-55285363 | None:intergenic |
| CAGCAATGTTTGTTATTGGA+TGG | 0.518720 | 7_1:+55285494 | Msa1025090:CDS |
| TATTACCAGTGACAAATTCA+AGG | 0.518978 | 7_1:+55285419 | Msa1025090:CDS |
| TTCAACGAACCATGCCTAGT+TGG | 0.519712 | 7_1:-55285661 | None:intergenic |
| TTTCACACACATGCTGTGGC+TGG | 0.523309 | 7_1:+55285340 | Msa1025090:CDS |
| GGTGCATTCTATGGTGGAAG+TGG | 0.527159 | 7_1:+55285442 | Msa1025090:CDS |
| CCTCTTGCACCATTAACATA+AGG | 0.528402 | 7_1:-55285706 | None:intergenic |
| GCATTCTATGGTGGAAGTGG+TGG | 0.530052 | 7_1:+55285445 | Msa1025090:CDS |
| GCACCCCTTGAATTTGTCAC+TGG | 0.539379 | 7_1:-55285424 | None:intergenic |
| GAGGAAGCTTATGCCCTTTG+GGG | 0.539536 | 7_1:+55285619 | Msa1025090:CDS |
| AATAGTAATCTACATAGGGC+TGG | 0.541637 | 7_1:-55285400 | None:intergenic |
| ATTACCAGTGACAAATTCAA+GGG | 0.543496 | 7_1:+55285420 | Msa1025090:CDS |
| ATGCAAGGCATTGTTTGTGA+TGG | 0.561100 | 7_1:+55283646 | Msa1025090:CDS |
| TGGTAATAGTAATCTACATA+GGG | 0.566028 | 7_1:-55285404 | None:intergenic |
| TACATAGGGCTGGCTCTGCA+AGG | 0.581821 | 7_1:-55285390 | None:intergenic |
| AAATATGATCCAACTAGGCA+TGG | 0.582321 | 7_1:+55285652 | Msa1025090:CDS |
| CCTTATGTTAATGGTGCAAG+AGG | 0.587708 | 7_1:+55285706 | Msa1025090:CDS |
| CTGCTCGTCAGGCATCCTCA+AGG | 0.593904 | 7_1:-55285566 | None:intergenic |
| TATAACAAGGAGAATGATTG+TGG | 0.603882 | 7_1:-55285530 | None:intergenic |
| GCTGTGGCTGGCCTATTGGG+TGG | 0.604590 | 7_1:+55285352 | Msa1025090:CDS |
| GGACGATGCGGCTCACGGGG+AGG | 0.610613 | 7_1:+55285600 | Msa1025090:CDS |
| TGCTCGTCAGGCATCCTCAA+GGG | 0.613907 | 7_1:-55285565 | None:intergenic |
| TCGTTGAATACTGGTAACAC+TGG | 0.616643 | 7_1:+55285676 | Msa1025090:CDS |
| TGAAAATCACCACATATGCA+AGG | 0.624974 | 7_1:+55283631 | None:intergenic |
| TCAAGGGGTGCATTCTATGG+TGG | 0.628215 | 7_1:+55285436 | Msa1025090:CDS |
| TGACGAGCAGCTCGAAATCG+GGG | 0.633869 | 7_1:+55285579 | Msa1025090:CDS |
| GTATGAATAGTTGTATAACA+AGG | 0.633966 | 7_1:-55285543 | None:intergenic |
| AACAAGGAGAATGATTGTGG+TGG | 0.634525 | 7_1:-55285527 | None:intergenic |
| GCTCGAAATCGGGGACGATG+CGG | 0.643288 | 7_1:+55285588 | Msa1025090:CDS |
| TACAACTATTCATACCCTTG+AGG | 0.649090 | 7_1:+55285551 | Msa1025090:CDS |
| AGTATTTCACACACATGCTG+TGG | 0.697237 | 7_1:+55285336 | Msa1025090:CDS |
| TTACCAGTGACAAATTCAAG+GGG | 0.721655 | 7_1:+55285421 | Msa1025090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAATAAAAAAAAATTACA+TGG | - | chr7_1:55284662-55284681 | None:intergenic | 10.0% |
| !!! | AATTTTTTTTTATTTGTTTC+AGG | + | chr7_1:55284665-55284684 | Msa1025090:intron | 10.0% |
| !!! | ATTTTTTTTTATTTGTTTCA+GGG | + | chr7_1:55284666-55284685 | Msa1025090:intron | 10.0% |
| !! | ACAAATAAAAAAAAATTACA+TGG | - | chr7_1:55284662-55284681 | None:intergenic | 10.0% |
| !!! | AATTTTTTTTTATTTGTTTC+AGG | + | chr7_1:55284665-55284684 | Msa1025090:intron | 10.0% |
| !!! | ATTTTTTTTTATTTGTTTCA+GGG | + | chr7_1:55284666-55284685 | Msa1025090:intron | 10.0% |
| !! | TTATATTAATTATAAGAAGG+AGG | - | chr7_1:55284346-55284365 | None:intergenic | 15.0% |
| !! | TTAAAAGAAAATACATGAAA+AGG | + | chr7_1:55284369-55284388 | Msa1025090:intron | 15.0% |
| !!! | AAATGAACAAAATTTGATTT+TGG | - | chr7_1:55284803-55284822 | None:intergenic | 15.0% |
| !! | TTCTCTCAAAAAAAAAATTA+AGG | - | chr7_1:55285259-55285278 | None:intergenic | 15.0% |
| !! | TTATATTAATTATAAGAAGG+AGG | - | chr7_1:55284346-55284365 | None:intergenic | 15.0% |
| !! | TTAAAAGAAAATACATGAAA+AGG | + | chr7_1:55284369-55284388 | Msa1025090:intron | 15.0% |
| !!! | AAATGAACAAAATTTGATTT+TGG | - | chr7_1:55284803-55284822 | None:intergenic | 15.0% |
| !! | TTCTCTCAAAAAAAAAATTA+AGG | - | chr7_1:55285259-55285278 | None:intergenic | 15.0% |
| !! | AAAATCCTTAAACTAAGAAA+AGG | - | chr7_1:55283795-55283814 | None:intergenic | 20.0% |
| !!! | TTAGTTTAAGGATTTTTTTC+TGG | + | chr7_1:55283799-55283818 | Msa1025090:intron | 20.0% |
| !!! | AATGTTTCTTTTTGATCTAA+TGG | + | chr7_1:55284043-55284062 | Msa1025090:intron | 20.0% |
| !!! | AATTTTTCTAACATTGAACA+AGG | - | chr7_1:55284199-55284218 | None:intergenic | 20.0% |
| !! | TGTTTAAAAAAGAATGAAAG+TGG | - | chr7_1:55284286-55284305 | None:intergenic | 20.0% |
| !!! | CTTTCATTCTTTTTTAAACA+AGG | + | chr7_1:55284286-55284305 | Msa1025090:intron | 20.0% |
| !!! | TGGATTTTTCTGTTTAAAAT+AGG | + | chr7_1:55284453-55284472 | Msa1025090:intron | 20.0% |
| !!! | TTTTCTGTTTAAAATAGGTT+TGG | + | chr7_1:55284458-55284477 | Msa1025090:intron | 20.0% |
| !! | TGAAATTGTCAAAAAATAGT+TGG | + | chr7_1:55284491-55284510 | Msa1025090:intron | 20.0% |
| !! | GAAATTGTCAAAAAATAGTT+GGG | + | chr7_1:55284492-55284511 | Msa1025090:intron | 20.0% |
| !! | ATGTTTAATTCCTATTAAAC+CGG | + | chr7_1:55284622-55284641 | Msa1025090:intron | 20.0% |
| !!! | TGCGTTTTTAATATAAAAAG+AGG | - | chr7_1:55284730-55284749 | None:intergenic | 20.0% |
| !! | ATCAGATATAACAAGTTTAA+AGG | + | chr7_1:55285098-55285117 | Msa1025090:intron | 20.0% |
| !!! | AAAAAAAGCACAACAAATTA+AGG | - | chr7_1:55285291-55285310 | None:intergenic | 20.0% |
| !!! | GTTGTGCTTTTTTTTATTAA+AGG | + | chr7_1:55285297-55285316 | Msa1025090:intron | 20.0% |
| !! | AAAATCCTTAAACTAAGAAA+AGG | - | chr7_1:55283795-55283814 | None:intergenic | 20.0% |
| !!! | TTAGTTTAAGGATTTTTTTC+TGG | + | chr7_1:55283799-55283818 | Msa1025090:intron | 20.0% |
| !!! | AATGTTTCTTTTTGATCTAA+TGG | + | chr7_1:55284043-55284062 | Msa1025090:intron | 20.0% |
| !!! | AATTTTTCTAACATTGAACA+AGG | - | chr7_1:55284199-55284218 | None:intergenic | 20.0% |
| !! | TGTTTAAAAAAGAATGAAAG+TGG | - | chr7_1:55284286-55284305 | None:intergenic | 20.0% |
| !!! | CTTTCATTCTTTTTTAAACA+AGG | + | chr7_1:55284286-55284305 | Msa1025090:intron | 20.0% |
| !!! | TGGATTTTTCTGTTTAAAAT+AGG | + | chr7_1:55284453-55284472 | Msa1025090:intron | 20.0% |
| !!! | TTTTCTGTTTAAAATAGGTT+TGG | + | chr7_1:55284458-55284477 | Msa1025090:intron | 20.0% |
| !! | TGAAATTGTCAAAAAATAGT+TGG | + | chr7_1:55284491-55284510 | Msa1025090:intron | 20.0% |
| !! | GAAATTGTCAAAAAATAGTT+GGG | + | chr7_1:55284492-55284511 | Msa1025090:intron | 20.0% |
| !! | ATGTTTAATTCCTATTAAAC+CGG | + | chr7_1:55284622-55284641 | Msa1025090:intron | 20.0% |
| !!! | TGCGTTTTTAATATAAAAAG+AGG | - | chr7_1:55284730-55284749 | None:intergenic | 20.0% |
| !! | ATCAGATATAACAAGTTTAA+AGG | + | chr7_1:55285098-55285117 | Msa1025090:intron | 20.0% |
| !!! | AAAAAAAGCACAACAAATTA+AGG | - | chr7_1:55285291-55285310 | None:intergenic | 20.0% |
| !!! | GTTGTGCTTTTTTTTATTAA+AGG | + | chr7_1:55285297-55285316 | Msa1025090:intron | 20.0% |
| ! | AATAAAAAAATGCAGTGTTG+TGG | + | chr7_1:55283675-55283694 | Msa1025090:CDS | 25.0% |
| !! | GTTATTGTTGATTATGATAG+TGG | + | chr7_1:55283865-55283884 | Msa1025090:intron | 25.0% |
| ! | AAGTAGATTGAAAAATGAAG+TGG | + | chr7_1:55283954-55283973 | Msa1025090:intron | 25.0% |
| !! | ACCTTTGTATAATTTGTGTA+TGG | + | chr7_1:55284075-55284094 | Msa1025090:intron | 25.0% |
| ! | ACCATACACAAATTATACAA+AGG | - | chr7_1:55284079-55284098 | None:intergenic | 25.0% |
| ! | TAAACTTTGTCCTTTAACAT+TGG | - | chr7_1:55284136-55284155 | None:intergenic | 25.0% |
| ! | AATGTTAAAGGACAAAGTTT+AGG | + | chr7_1:55284135-55284154 | Msa1025090:intron | 25.0% |
| !! | TGGAATTTGGAATCAAATAT+TGG | - | chr7_1:55284241-55284260 | None:intergenic | 25.0% |
| ! | AAAAGAAAGTTGTTGGAATT+TGG | - | chr7_1:55284254-55284273 | None:intergenic | 25.0% |
| ! | CATAAGAAAAAGAAAGTTGT+TGG | - | chr7_1:55284261-55284280 | None:intergenic | 25.0% |
| !! | CAACAACTTTCTTTTTCTTA+TGG | + | chr7_1:55284259-55284278 | Msa1025090:intron | 25.0% |
| !!! | AGAAGTAAGTTTTTTGTTTG+AGG | + | chr7_1:55284531-55284550 | Msa1025090:intron | 25.0% |
| !!! | GAAGTAAGTTTTTTGTTTGA+GGG | + | chr7_1:55284532-55284551 | Msa1025090:intron | 25.0% |
| ! | TGGTAATAGTAATCTACATA+GGG | - | chr7_1:55285407-55285426 | None:intergenic | 25.0% |
| ! | GTATGAATAGTTGTATAACA+AGG | - | chr7_1:55285546-55285565 | None:intergenic | 25.0% |
| ! | AATAAAAAAATGCAGTGTTG+TGG | + | chr7_1:55283675-55283694 | Msa1025090:CDS | 25.0% |
| !! | GTTATTGTTGATTATGATAG+TGG | + | chr7_1:55283865-55283884 | Msa1025090:intron | 25.0% |
| ! | AAGTAGATTGAAAAATGAAG+TGG | + | chr7_1:55283954-55283973 | Msa1025090:intron | 25.0% |
| !! | ACCTTTGTATAATTTGTGTA+TGG | + | chr7_1:55284075-55284094 | Msa1025090:intron | 25.0% |
| ! | ACCATACACAAATTATACAA+AGG | - | chr7_1:55284079-55284098 | None:intergenic | 25.0% |
| ! | TAAACTTTGTCCTTTAACAT+TGG | - | chr7_1:55284136-55284155 | None:intergenic | 25.0% |
| ! | AATGTTAAAGGACAAAGTTT+AGG | + | chr7_1:55284135-55284154 | Msa1025090:intron | 25.0% |
| !! | TGGAATTTGGAATCAAATAT+TGG | - | chr7_1:55284241-55284260 | None:intergenic | 25.0% |
| ! | AAAAGAAAGTTGTTGGAATT+TGG | - | chr7_1:55284254-55284273 | None:intergenic | 25.0% |
| ! | CATAAGAAAAAGAAAGTTGT+TGG | - | chr7_1:55284261-55284280 | None:intergenic | 25.0% |
| !! | CAACAACTTTCTTTTTCTTA+TGG | + | chr7_1:55284259-55284278 | Msa1025090:intron | 25.0% |
| !!! | AGAAGTAAGTTTTTTGTTTG+AGG | + | chr7_1:55284531-55284550 | Msa1025090:intron | 25.0% |
| !!! | GAAGTAAGTTTTTTGTTTGA+GGG | + | chr7_1:55284532-55284551 | Msa1025090:intron | 25.0% |
| ! | TGGTAATAGTAATCTACATA+GGG | - | chr7_1:55285407-55285426 | None:intergenic | 25.0% |
| ! | GTATGAATAGTTGTATAACA+AGG | - | chr7_1:55285546-55285565 | None:intergenic | 25.0% |
| ! | TTTATTTCAGTGCTGAAAAG+AGG | - | chr7_1:55283757-55283776 | None:intergenic | 30.0% |
| CACTGAAATAAAAATAAGCG+TGG | + | chr7_1:55283765-55283784 | Msa1025090:intron | 30.0% | |
| !! | TGATTATGATAGTGGATTAG+TGG | + | chr7_1:55283873-55283892 | Msa1025090:intron | 30.0% |
| TAGATTGAAAAATGAAGTGG+TGG | + | chr7_1:55283957-55283976 | Msa1025090:intron | 30.0% | |
| AATCAAATATTGGAAACCTG+GGG | - | chr7_1:55284231-55284250 | None:intergenic | 30.0% | |
| GAATCAAATATTGGAAACCT+GGG | - | chr7_1:55284232-55284251 | None:intergenic | 30.0% | |
| AATTATAAGAAGGAGGATGA+AGG | - | chr7_1:55284339-55284358 | None:intergenic | 30.0% | |
| !!! | ATTTCTTTTGCCGGTTTAAT+AGG | - | chr7_1:55284635-55284654 | None:intergenic | 30.0% |
| ATTAAACCGGCAAAAGAAAT+TGG | + | chr7_1:55284635-55284654 | Msa1025090:intron | 30.0% | |
| GAGTTCAAGAAATGTTAGAA+AGG | - | chr7_1:55284864-55284883 | None:intergenic | 30.0% | |
| GATATCTAGATTTGCCTAAT+TGG | + | chr7_1:55284934-55284953 | Msa1025090:intron | 30.0% | |
| ! | TAGTTTGAAATCTTGTGTGA+TGG | - | chr7_1:55284972-55284991 | None:intergenic | 30.0% |
| ! | TCCATTGTGTCTAATCATTT+TGG | + | chr7_1:55285026-55285045 | Msa1025090:intron | 30.0% |
| ACCAAAATGATTAGACACAA+TGG | - | chr7_1:55285030-55285049 | None:intergenic | 30.0% | |
| GATAAATGATCGCGAAATAA+CGG | - | chr7_1:55285215-55285234 | None:intergenic | 30.0% | |
| GATAAATGATCGCGAAATTA+AGG | - | chr7_1:55285237-55285256 | None:intergenic | 30.0% | |
| CTGGTAATAGTAATCTACAT+AGG | - | chr7_1:55285408-55285427 | None:intergenic | 30.0% | |
| TATTACCAGTGACAAATTCA+AGG | + | chr7_1:55285419-55285438 | Msa1025090:CDS | 30.0% | |
| ATTACCAGTGACAAATTCAA+GGG | + | chr7_1:55285420-55285439 | Msa1025090:CDS | 30.0% | |
| !!! | CCACTAATTGTTTTAGGAAT+TGG | - | chr7_1:55285474-55285493 | None:intergenic | 30.0% |
| CCAATTCCTAAAACAATTAG+TGG | + | chr7_1:55285471-55285490 | Msa1025090:CDS | 30.0% | |
| TATAACAAGGAGAATGATTG+TGG | - | chr7_1:55285533-55285552 | None:intergenic | 30.0% | |
| GAGAAAAATATGATCCAACT+AGG | + | chr7_1:55285647-55285666 | Msa1025090:CDS | 30.0% | |
| ! | TTTATTTCAGTGCTGAAAAG+AGG | - | chr7_1:55283757-55283776 | None:intergenic | 30.0% |
| CACTGAAATAAAAATAAGCG+TGG | + | chr7_1:55283765-55283784 | Msa1025090:intron | 30.0% | |
| !! | TGATTATGATAGTGGATTAG+TGG | + | chr7_1:55283873-55283892 | Msa1025090:intron | 30.0% |
| TAGATTGAAAAATGAAGTGG+TGG | + | chr7_1:55283957-55283976 | Msa1025090:intron | 30.0% | |
| AATCAAATATTGGAAACCTG+GGG | - | chr7_1:55284231-55284250 | None:intergenic | 30.0% | |
| GAATCAAATATTGGAAACCT+GGG | - | chr7_1:55284232-55284251 | None:intergenic | 30.0% | |
| AATTATAAGAAGGAGGATGA+AGG | - | chr7_1:55284339-55284358 | None:intergenic | 30.0% | |
| !!! | ATTTCTTTTGCCGGTTTAAT+AGG | - | chr7_1:55284635-55284654 | None:intergenic | 30.0% |
| ATTAAACCGGCAAAAGAAAT+TGG | + | chr7_1:55284635-55284654 | Msa1025090:intron | 30.0% | |
| GAGTTCAAGAAATGTTAGAA+AGG | - | chr7_1:55284864-55284883 | None:intergenic | 30.0% | |
| GATATCTAGATTTGCCTAAT+TGG | + | chr7_1:55284934-55284953 | Msa1025090:intron | 30.0% | |
| ! | TAGTTTGAAATCTTGTGTGA+TGG | - | chr7_1:55284972-55284991 | None:intergenic | 30.0% |
| ! | TCCATTGTGTCTAATCATTT+TGG | + | chr7_1:55285026-55285045 | Msa1025090:intron | 30.0% |
| ACCAAAATGATTAGACACAA+TGG | - | chr7_1:55285030-55285049 | None:intergenic | 30.0% | |
| GATAAATGATCGCGAAATAA+CGG | - | chr7_1:55285215-55285234 | None:intergenic | 30.0% | |
| GATAAATGATCGCGAAATTA+AGG | - | chr7_1:55285237-55285256 | None:intergenic | 30.0% | |
| CTGGTAATAGTAATCTACAT+AGG | - | chr7_1:55285408-55285427 | None:intergenic | 30.0% | |
| TATTACCAGTGACAAATTCA+AGG | + | chr7_1:55285419-55285438 | Msa1025090:CDS | 30.0% | |
| ATTACCAGTGACAAATTCAA+GGG | + | chr7_1:55285420-55285439 | Msa1025090:CDS | 30.0% | |
| !!! | CCACTAATTGTTTTAGGAAT+TGG | - | chr7_1:55285474-55285493 | None:intergenic | 30.0% |
| CCAATTCCTAAAACAATTAG+TGG | + | chr7_1:55285471-55285490 | Msa1025090:CDS | 30.0% | |
| TATAACAAGGAGAATGATTG+TGG | - | chr7_1:55285533-55285552 | None:intergenic | 30.0% | |
| GAGAAAAATATGATCCAACT+AGG | + | chr7_1:55285647-55285666 | Msa1025090:CDS | 30.0% | |
| TTTGGTCATACATGAGAAGA+GGG | + | chr7_1:55283710-55283729 | Msa1025090:intron | 35.0% | |
| ! | GACAGCCTTTTCTTAGTTTA+AGG | + | chr7_1:55283787-55283806 | Msa1025090:intron | 35.0% |
| ACTTTGTCCTTTAACATTGG+TGG | - | chr7_1:55284133-55284152 | None:intergenic | 35.0% | |
| AAAGGACAAAGTTTAGGTGA+AGG | + | chr7_1:55284141-55284160 | Msa1025090:intron | 35.0% | |
| GGAATCAAATATTGGAAACC+TGG | - | chr7_1:55284233-55284252 | None:intergenic | 35.0% | |
| TCATCATGCCACTATCAAAA+TGG | - | chr7_1:55284896-55284915 | None:intergenic | 35.0% | |
| TGACTGCACAACTTAATGAA+TGG | - | chr7_1:55285079-55285098 | None:intergenic | 35.0% | |
| !! | TTAAAGGTTGATGACACTCT+TGG | + | chr7_1:55285313-55285332 | Msa1025090:intron | 35.0% |
| AATAGTAATCTACATAGGGC+TGG | - | chr7_1:55285403-55285422 | None:intergenic | 35.0% | |
| TTACCAGTGACAAATTCAAG+GGG | + | chr7_1:55285421-55285440 | Msa1025090:CDS | 35.0% | |
| ! | TTGCTGCCACTAATTGTTTT+AGG | - | chr7_1:55285480-55285499 | None:intergenic | 35.0% |
| !! | CAGCAATGTTTGTTATTGGA+TGG | + | chr7_1:55285494-55285513 | Msa1025090:CDS | 35.0% |
| TACAACTATTCATACCCTTG+AGG | + | chr7_1:55285551-55285570 | Msa1025090:CDS | 35.0% | |
| AAATATGATCCAACTAGGCA+TGG | + | chr7_1:55285652-55285671 | Msa1025090:CDS | 35.0% | |
| TTTGGTCATACATGAGAAGA+GGG | + | chr7_1:55283710-55283729 | Msa1025090:intron | 35.0% | |
| ! | GACAGCCTTTTCTTAGTTTA+AGG | + | chr7_1:55283787-55283806 | Msa1025090:intron | 35.0% |
| ACTTTGTCCTTTAACATTGG+TGG | - | chr7_1:55284133-55284152 | None:intergenic | 35.0% | |
| AAAGGACAAAGTTTAGGTGA+AGG | + | chr7_1:55284141-55284160 | Msa1025090:intron | 35.0% | |
| GGAATCAAATATTGGAAACC+TGG | - | chr7_1:55284233-55284252 | None:intergenic | 35.0% | |
| TCATCATGCCACTATCAAAA+TGG | - | chr7_1:55284896-55284915 | None:intergenic | 35.0% | |
| TGACTGCACAACTTAATGAA+TGG | - | chr7_1:55285079-55285098 | None:intergenic | 35.0% | |
| !! | TTAAAGGTTGATGACACTCT+TGG | + | chr7_1:55285313-55285332 | Msa1025090:intron | 35.0% |
| AATAGTAATCTACATAGGGC+TGG | - | chr7_1:55285403-55285422 | None:intergenic | 35.0% | |
| TTACCAGTGACAAATTCAAG+GGG | + | chr7_1:55285421-55285440 | Msa1025090:CDS | 35.0% | |
| ! | TTGCTGCCACTAATTGTTTT+AGG | - | chr7_1:55285480-55285499 | None:intergenic | 35.0% |
| !! | CAGCAATGTTTGTTATTGGA+TGG | + | chr7_1:55285494-55285513 | Msa1025090:CDS | 35.0% |
| TACAACTATTCATACCCTTG+AGG | + | chr7_1:55285551-55285570 | Msa1025090:CDS | 35.0% | |
| AAATATGATCCAACTAGGCA+TGG | + | chr7_1:55285652-55285671 | Msa1025090:CDS | 35.0% | |
| !! | ATGCAAGGCATTGTTTGTGA+TGG | + | chr7_1:55283646-55283665 | Msa1025090:CDS | 40.0% |
| CTTTGGTCATACATGAGAAG+AGG | + | chr7_1:55283709-55283728 | Msa1025090:intron | 40.0% | |
| TTGGTCATACATGAGAAGAG+GGG | + | chr7_1:55283711-55283730 | Msa1025090:intron | 40.0% | |
| ! | AATGAAGTGGTGGTGAAAAG+TGG | + | chr7_1:55283967-55283986 | Msa1025090:intron | 40.0% |
| ! | ATGAAGTGGTGGTGAAAAGT+GGG | + | chr7_1:55283968-55283987 | Msa1025090:intron | 40.0% |
| CTAAACGCCACCAATGTTAA+AGG | + | chr7_1:55284123-55284142 | Msa1025090:intron | 40.0% | |
| AAAAATTGACCATTTGCCCC+AGG | + | chr7_1:55284212-55284231 | Msa1025090:intron | 40.0% | |
| !! | GACACTCTACTTTTCTTGCT+TGG | + | chr7_1:55284433-55284452 | Msa1025090:intron | 40.0% |
| ! | CATGGACCAATTTCTTTTGC+CGG | - | chr7_1:55284644-55284663 | None:intergenic | 40.0% |
| GGTGATATCTCAGACCAATT+AGG | - | chr7_1:55284951-55284970 | None:intergenic | 40.0% | |
| AGTATTTCACACACATGCTG+TGG | + | chr7_1:55285336-55285355 | Msa1025090:CDS | 40.0% | |
| ! | AATTCAAGGGGTGCATTCTA+TGG | + | chr7_1:55285433-55285452 | Msa1025090:CDS | 40.0% |
| !! | GTGGCAGCAATGTTTGTTAT+TGG | + | chr7_1:55285490-55285509 | Msa1025090:CDS | 40.0% |
| AACAAGGAGAATGATTGTGG+TGG | - | chr7_1:55285530-55285549 | None:intergenic | 40.0% | |
| ! | TTTTTCTCCATCACCCCAAA+GGG | - | chr7_1:55285635-55285654 | None:intergenic | 40.0% |
| ! | ATTTTTCTCCATCACCCCAA+AGG | - | chr7_1:55285636-55285655 | None:intergenic | 40.0% |
| TCGTTGAATACTGGTAACAC+TGG | + | chr7_1:55285676-55285695 | Msa1025090:CDS | 40.0% | |
| ! | GGAGTGTCACCTTATGTTAA+TGG | + | chr7_1:55285697-55285716 | Msa1025090:CDS | 40.0% |
| CCTCTTGCACCATTAACATA+AGG | - | chr7_1:55285709-55285728 | None:intergenic | 40.0% | |
| CCTTATGTTAATGGTGCAAG+AGG | + | chr7_1:55285706-55285725 | Msa1025090:CDS | 40.0% | |
| !! | ATGCAAGGCATTGTTTGTGA+TGG | + | chr7_1:55283646-55283665 | Msa1025090:CDS | 40.0% |
| CTTTGGTCATACATGAGAAG+AGG | + | chr7_1:55283709-55283728 | Msa1025090:intron | 40.0% | |
| TTGGTCATACATGAGAAGAG+GGG | + | chr7_1:55283711-55283730 | Msa1025090:intron | 40.0% | |
| ! | AATGAAGTGGTGGTGAAAAG+TGG | + | chr7_1:55283967-55283986 | Msa1025090:intron | 40.0% |
| ! | ATGAAGTGGTGGTGAAAAGT+GGG | + | chr7_1:55283968-55283987 | Msa1025090:intron | 40.0% |
| CTAAACGCCACCAATGTTAA+AGG | + | chr7_1:55284123-55284142 | Msa1025090:intron | 40.0% | |
| AAAAATTGACCATTTGCCCC+AGG | + | chr7_1:55284212-55284231 | Msa1025090:intron | 40.0% | |
| !! | GACACTCTACTTTTCTTGCT+TGG | + | chr7_1:55284433-55284452 | Msa1025090:intron | 40.0% |
| ! | CATGGACCAATTTCTTTTGC+CGG | - | chr7_1:55284644-55284663 | None:intergenic | 40.0% |
| GGTGATATCTCAGACCAATT+AGG | - | chr7_1:55284951-55284970 | None:intergenic | 40.0% | |
| AGTATTTCACACACATGCTG+TGG | + | chr7_1:55285336-55285355 | Msa1025090:CDS | 40.0% | |
| ! | AATTCAAGGGGTGCATTCTA+TGG | + | chr7_1:55285433-55285452 | Msa1025090:CDS | 40.0% |
| !! | GTGGCAGCAATGTTTGTTAT+TGG | + | chr7_1:55285490-55285509 | Msa1025090:CDS | 40.0% |
| AACAAGGAGAATGATTGTGG+TGG | - | chr7_1:55285530-55285549 | None:intergenic | 40.0% | |
| ! | TTTTTCTCCATCACCCCAAA+GGG | - | chr7_1:55285635-55285654 | None:intergenic | 40.0% |
| ! | ATTTTTCTCCATCACCCCAA+AGG | - | chr7_1:55285636-55285655 | None:intergenic | 40.0% |
| TCGTTGAATACTGGTAACAC+TGG | + | chr7_1:55285676-55285695 | Msa1025090:CDS | 40.0% | |
| ! | GGAGTGTCACCTTATGTTAA+TGG | + | chr7_1:55285697-55285716 | Msa1025090:CDS | 40.0% |
| CCTCTTGCACCATTAACATA+AGG | - | chr7_1:55285709-55285728 | None:intergenic | 40.0% | |
| CCTTATGTTAATGGTGCAAG+AGG | + | chr7_1:55285706-55285725 | Msa1025090:CDS | 40.0% | |
| TTGTGGTGAGAGTGAGTCTT+TGG | + | chr7_1:55283692-55283711 | Msa1025090:intron | 45.0% | |
| AACATGTGACCTACGCAAAG+AGG | - | chr7_1:55284169-55284188 | None:intergenic | 45.0% | |
| TATTGGAAACCTGGGGCAAA+TGG | - | chr7_1:55284224-55284243 | None:intergenic | 45.0% | |
| !!! | TCTGCCTGCCATTTTGATAG+TGG | + | chr7_1:55284885-55284904 | Msa1025090:intron | 45.0% |
| CATGCCACTATCAAAATGGC+AGG | - | chr7_1:55284892-55284911 | None:intergenic | 45.0% | |
| TTCAACGAACCATGCCTAGT+TGG | - | chr7_1:55285664-55285683 | None:intergenic | 45.0% | |
| AGGCATGGTTCGTTGAATAC+TGG | + | chr7_1:55285667-55285686 | Msa1025090:CDS | 45.0% | |
| TTGTGGTGAGAGTGAGTCTT+TGG | + | chr7_1:55283692-55283711 | Msa1025090:intron | 45.0% | |
| AACATGTGACCTACGCAAAG+AGG | - | chr7_1:55284169-55284188 | None:intergenic | 45.0% | |
| TATTGGAAACCTGGGGCAAA+TGG | - | chr7_1:55284224-55284243 | None:intergenic | 45.0% | |
| !!! | TCTGCCTGCCATTTTGATAG+TGG | + | chr7_1:55284885-55284904 | Msa1025090:intron | 45.0% |
| CATGCCACTATCAAAATGGC+AGG | - | chr7_1:55284892-55284911 | None:intergenic | 45.0% | |
| TTCAACGAACCATGCCTAGT+TGG | - | chr7_1:55285664-55285683 | None:intergenic | 45.0% | |
| AGGCATGGTTCGTTGAATAC+TGG | + | chr7_1:55285667-55285686 | Msa1025090:CDS | 45.0% | |
| !! | ATATTATATTAATTATAAGA+AGG | - | chr7_1:55284349-55284368 | None:intergenic | 5.0% |
| !! | ATATTATATTAATTATAAGA+AGG | - | chr7_1:55284349-55284368 | None:intergenic | 5.0% |
| ! | AAGTGGTGGTGAAAAGTGGG+AGG | + | chr7_1:55283971-55283990 | Msa1025090:intron | 50.0% |
| ! | AGTGGTGGTGAAAAGTGGGA+GGG | + | chr7_1:55283972-55283991 | Msa1025090:intron | 50.0% |
| GTGAAGGTTCCTCTTTGCGT+AGG | + | chr7_1:55284157-55284176 | Msa1025090:intron | 50.0% | |
| TTTCACACACATGCTGTGGC+TGG | + | chr7_1:55285340-55285359 | Msa1025090:CDS | 50.0% | |
| CTGTTAGTAGGCCACCCAAT+AGG | - | chr7_1:55285366-55285385 | None:intergenic | 50.0% | |
| CTATTGGGTGGCCTACTAAC+AGG | + | chr7_1:55285364-55285383 | Msa1025090:CDS | 50.0% | |
| CTGCAAGGAGTCCTGTTAGT+AGG | - | chr7_1:55285378-55285397 | None:intergenic | 50.0% | |
| GCACCCCTTGAATTTGTCAC+TGG | - | chr7_1:55285427-55285446 | None:intergenic | 50.0% | |
| ! | TCAAGGGGTGCATTCTATGG+TGG | + | chr7_1:55285436-55285455 | Msa1025090:CDS | 50.0% |
| ! | GGTGCATTCTATGGTGGAAG+TGG | + | chr7_1:55285442-55285461 | Msa1025090:CDS | 50.0% |
| ! | GCATTCTATGGTGGAAGTGG+TGG | + | chr7_1:55285445-55285464 | Msa1025090:CDS | 50.0% |
| GGAGGAAGCTTATGCCCTTT+GGG | + | chr7_1:55285618-55285637 | Msa1025090:CDS | 50.0% | |
| GAGGAAGCTTATGCCCTTTG+GGG | + | chr7_1:55285619-55285638 | Msa1025090:CDS | 50.0% | |
| ! | AAGTGGTGGTGAAAAGTGGG+AGG | + | chr7_1:55283971-55283990 | Msa1025090:intron | 50.0% |
| ! | AGTGGTGGTGAAAAGTGGGA+GGG | + | chr7_1:55283972-55283991 | Msa1025090:intron | 50.0% |
| GTGAAGGTTCCTCTTTGCGT+AGG | + | chr7_1:55284157-55284176 | Msa1025090:intron | 50.0% | |
| TTTCACACACATGCTGTGGC+TGG | + | chr7_1:55285340-55285359 | Msa1025090:CDS | 50.0% | |
| CTGTTAGTAGGCCACCCAAT+AGG | - | chr7_1:55285366-55285385 | None:intergenic | 50.0% | |
| CTATTGGGTGGCCTACTAAC+AGG | + | chr7_1:55285364-55285383 | Msa1025090:CDS | 50.0% | |
| CTGCAAGGAGTCCTGTTAGT+AGG | - | chr7_1:55285378-55285397 | None:intergenic | 50.0% | |
| GCACCCCTTGAATTTGTCAC+TGG | - | chr7_1:55285427-55285446 | None:intergenic | 50.0% | |
| ! | TCAAGGGGTGCATTCTATGG+TGG | + | chr7_1:55285436-55285455 | Msa1025090:CDS | 50.0% |
| ! | GGTGCATTCTATGGTGGAAG+TGG | + | chr7_1:55285442-55285461 | Msa1025090:CDS | 50.0% |
| ! | GCATTCTATGGTGGAAGTGG+TGG | + | chr7_1:55285445-55285464 | Msa1025090:CDS | 50.0% |
| GGAGGAAGCTTATGCCCTTT+GGG | + | chr7_1:55285618-55285637 | Msa1025090:CDS | 50.0% | |
| GAGGAAGCTTATGCCCTTTG+GGG | + | chr7_1:55285619-55285638 | Msa1025090:CDS | 50.0% | |
| !! | ACATGCTGTGGCTGGCCTAT+TGG | + | chr7_1:55285348-55285367 | Msa1025090:CDS | 55.0% |
| !! | CATGCTGTGGCTGGCCTATT+GGG | + | chr7_1:55285349-55285368 | Msa1025090:CDS | 55.0% |
| !! | TACATAGGGCTGGCTCTGCA+AGG | - | chr7_1:55285393-55285412 | None:intergenic | 55.0% |
| TGCTCGTCAGGCATCCTCAA+GGG | - | chr7_1:55285568-55285587 | None:intergenic | 55.0% | |
| CCTGACGAGCAGCTCGAAAT+CGG | + | chr7_1:55285577-55285596 | Msa1025090:CDS | 55.0% | |
| CTGACGAGCAGCTCGAAATC+GGG | + | chr7_1:55285578-55285597 | Msa1025090:CDS | 55.0% | |
| TGACGAGCAGCTCGAAATCG+GGG | + | chr7_1:55285579-55285598 | Msa1025090:CDS | 55.0% | |
| GGGAGGAAGCTTATGCCCTT+TGG | + | chr7_1:55285617-55285636 | Msa1025090:CDS | 55.0% | |
| !! | GCTTATGCCCTTTGGGGTGA+TGG | + | chr7_1:55285625-55285644 | Msa1025090:CDS | 55.0% |
| !! | ACATGCTGTGGCTGGCCTAT+TGG | + | chr7_1:55285348-55285367 | Msa1025090:CDS | 55.0% |
| !! | CATGCTGTGGCTGGCCTATT+GGG | + | chr7_1:55285349-55285368 | Msa1025090:CDS | 55.0% |
| !! | TACATAGGGCTGGCTCTGCA+AGG | - | chr7_1:55285393-55285412 | None:intergenic | 55.0% |
| TGCTCGTCAGGCATCCTCAA+GGG | - | chr7_1:55285568-55285587 | None:intergenic | 55.0% | |
| CCTGACGAGCAGCTCGAAAT+CGG | + | chr7_1:55285577-55285596 | Msa1025090:CDS | 55.0% | |
| CTGACGAGCAGCTCGAAATC+GGG | + | chr7_1:55285578-55285597 | Msa1025090:CDS | 55.0% | |
| TGACGAGCAGCTCGAAATCG+GGG | + | chr7_1:55285579-55285598 | Msa1025090:CDS | 55.0% | |
| GGGAGGAAGCTTATGCCCTT+TGG | + | chr7_1:55285617-55285636 | Msa1025090:CDS | 55.0% | |
| !! | GCTTATGCCCTTTGGGGTGA+TGG | + | chr7_1:55285625-55285644 | Msa1025090:CDS | 55.0% |
| CTGCTCGTCAGGCATCCTCA+AGG | - | chr7_1:55285569-55285588 | None:intergenic | 60.0% | |
| CCGATTTCGAGCTGCTCGTC+AGG | - | chr7_1:55285580-55285599 | None:intergenic | 60.0% | |
| GCTCGAAATCGGGGACGATG+CGG | + | chr7_1:55285588-55285607 | Msa1025090:CDS | 60.0% | |
| CTGCTCGTCAGGCATCCTCA+AGG | - | chr7_1:55285569-55285588 | None:intergenic | 60.0% | |
| CCGATTTCGAGCTGCTCGTC+AGG | - | chr7_1:55285580-55285599 | None:intergenic | 60.0% | |
| GCTCGAAATCGGGGACGATG+CGG | + | chr7_1:55285588-55285607 | Msa1025090:CDS | 60.0% | |
| !! | GCTGTGGCTGGCCTATTGGG+TGG | + | chr7_1:55285352-55285371 | Msa1025090:CDS | 65.0% |
| ATCGGGGACGATGCGGCTCA+CGG | + | chr7_1:55285595-55285614 | Msa1025090:CDS | 65.0% | |
| !! | GCTGTGGCTGGCCTATTGGG+TGG | + | chr7_1:55285352-55285371 | Msa1025090:CDS | 65.0% |
| ATCGGGGACGATGCGGCTCA+CGG | + | chr7_1:55285595-55285614 | Msa1025090:CDS | 65.0% | |
| TCGGGGACGATGCGGCTCAC+GGG | + | chr7_1:55285596-55285615 | Msa1025090:CDS | 70.0% | |
| TCGGGGACGATGCGGCTCAC+GGG | + | chr7_1:55285596-55285615 | Msa1025090:CDS | 70.0% | |
| CGGGGACGATGCGGCTCACG+GGG | + | chr7_1:55285597-55285616 | Msa1025090:CDS | 75.0% | |
| GGACGATGCGGCTCACGGGG+AGG | + | chr7_1:55285600-55285619 | Msa1025090:CDS | 75.0% | |
| CGGGGACGATGCGGCTCACG+GGG | + | chr7_1:55285597-55285616 | Msa1025090:CDS | 75.0% | |
| GGACGATGCGGCTCACGGGG+AGG | + | chr7_1:55285600-55285619 | Msa1025090:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 55283646 | 55285747 | 55283646 | ID=Msa1025090;Name=Msa1025090 |
| chr7_1 | mRNA | 55283646 | 55285747 | 55283646 | ID=Msa1025090-mRNA-1;Parent=Msa1025090;Name=Msa1025090-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0|0|0.5|0|0.5|2|0|161 |
| chr7_1 | exon | 55283646 | 55283702 | 55283646 | ID=Msa1025090-mRNA-1:exon:11052;Parent=Msa1025090-mRNA-1 |
| chr7_1 | exon | 55285319 | 55285747 | 55285319 | ID=Msa1025090-mRNA-1:exon:11053;Parent=Msa1025090-mRNA-1 |
| chr7_1 | CDS | 55283646 | 55283702 | 55283646 | ID=Msa1025090-mRNA-1:cds;Parent=Msa1025090-mRNA-1 |
| chr7_1 | CDS | 55285319 | 55285747 | 55285319 | ID=Msa1025090-mRNA-1:cds;Parent=Msa1025090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
