AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1109090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1109090 MtrunA17_Chr7g0243071 97.718 482 11 0 4 485 2 483 0.0 951
Msa1109090 MtrunA17_Chr7g0243071 97.183 142 4 0 479 620 346 487 3.30e-88 282
Msa1109090 MtrunA17_Chr8g0385081 75.431 464 108 2 17 475 22 484 0.0 668
Msa1109090 MtrunA17_Chr8g0385081 67.669 133 38 1 479 606 352 484 1.33e-36 143
Msa1109090 MtrunA17_Chr1g0163571 61.746 481 155 5 14 484 14 475 0.0 569
Msa1109090 MtrunA17_Chr1g0163571 48.344 151 69 3 479 620 330 480 6.10e-33 132
Msa1109090 MtrunA17_Chr4g0007621 87.296 307 38 1 8 314 6 311 0.0 538
Msa1109090 MtrunA17_Chr7g0274111 55.150 466 177 6 16 468 13 459 1.81e-178 514
Msa1109090 MtrunA17_Chr7g0274111 38.931 131 70 2 479 599 329 459 1.07e-21 98.6
Msa1109090 MtrunA17_Chr8g0371171 60.081 248 92 2 218 459 37 283 5.86e-101 310
Msa1109090 MtrunA17_Chr8g0371171 46.980 149 63 5 476 614 161 303 5.05e-31 123
Msa1109090 MtrunA17_Chr8g0371161 64.091 220 53 4 6 218 5 205 3.20e-78 247
Msa1109090 MtrunA17_Chr4g0007611 81.818 143 25 1 479 620 10 152 4.41e-65 210
Msa1109090 MtrunA17_Chr4g0007611 78.169 142 30 1 345 485 7 148 1.21e-60 198
Msa1109090 MtrunA17_Chr1g0168631 25.478 471 288 12 24 464 48 485 9.44e-22 99.0
Msa1109090 MtrunA17_Chr1g0189971 25.662 491 294 13 24 477 47 503 6.36e-19 90.5
Msa1109090 MtrunA17_Chr7g0272721 26.216 370 230 11 131 464 123 485 4.34e-16 81.3
Msa1109090 MtrunA17_Chr3g0104661 25.319 470 258 16 42 467 31 451 1.16e-15 79.7
Msa1109090 MtrunA17_Chr7g0262361 24.211 380 229 9 131 466 123 487 7.35e-15 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1109090 AT2G38290.1 77.293 458 92 1 8 465 4 449 0.0 709
Msa1109090 AT2G38290.1 66.667 144 46 2 479 620 332 475 1.69e-53 190
Msa1109090 AT2G38290.2 80.781 333 64 0 133 465 1 333 0.0 541
Msa1109090 AT2G38290.2 66.667 144 46 2 479 620 216 359 1.13e-54 190
Msa1109090 AT3G24300.1 25.364 481 283 13 24 467 46 487 7.65e-22 99.8
Msa1109090 AT3G24290.1 26.940 464 264 15 24 451 46 470 3.27e-21 97.8
Msa1109090 AT1G64780.1 26.362 459 278 13 24 452 52 480 3.42e-21 97.8
Msa1109090 AT4G13510.1 25.210 476 284 13 24 464 42 480 1.53e-20 95.9
Msa1109090 AT4G28700.1 25.971 489 290 16 24 475 51 504 6.18e-18 87.8

Find 177 sgRNAs with CRISPR-Local

Find 531 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGTGATTGGAGCTGTTC+AGG 0.196275 7_3:+52448219 Msa1109090:CDS
TATGTTATTCATCTTTCTTC+TGG 0.220707 7_3:+52446945 Msa1109090:CDS
GGATACTTGGTCTGAATATT+TGG 0.224868 7_3:-52446171 None:intergenic
CTGGTTTCACTGCTGCTTAT+TGG 0.234954 7_3:+52446973 Msa1109090:CDS
TTGTTGGCTGGTTCTGTTCT+TGG 0.237579 7_3:+52446792 Msa1109090:CDS
TGGGGTGTTATTGATTATTC+TGG 0.250620 7_3:+52446918 Msa1109090:CDS
ACATGCTGTGGCTGGCCTAT+TGG 0.253905 7_3:+52450936 Msa1109090:CDS
ACATGCTGTGGCTGGCCTAT+TGG 0.253905 7_3:+52454492 Msa1109090:CDS
CATGCTGTGGCTGGCCTATT+GGG 0.258730 7_3:+52450937 Msa1109090:CDS
CATGCTGTGGCTGGCCTATT+GGG 0.258730 7_3:+52454493 Msa1109090:CDS
CGAGGAGGCTTATGCCCTTT+GGG 0.265996 7_3:+52451206 Msa1109090:CDS
GGAGGAAGCTTATGCCCTTT+GGG 0.268571 7_3:+52454762 Msa1109090:CDS
GTGGTGGATTTCTTTATCAT+TGG 0.270317 7_3:+52446898 Msa1109090:CDS
CATCTTTCTTCTGGAATTGC+TGG 0.270523 7_3:+52446954 Msa1109090:CDS
GGTAAAGGTGCACCAGCTTT+AGG 0.272696 7_3:+52446618 Msa1109090:CDS
TTTGGGAAGCCTTCTGTGAT+TGG 0.274978 7_3:+52448208 Msa1109090:CDS
TGGTTTCACTGCTGCTTATT+GGG 0.280966 7_3:+52446974 Msa1109090:CDS
GTGGCAGCAATGTTTGTTAT+TGG 0.287336 7_3:+52451078 Msa1109090:CDS
GTGGCAGCAATGTTTGTTAT+TGG 0.287336 7_3:+52454634 Msa1109090:CDS
TTGTTATGGATGGGTTGGTC+AGG 0.288183 7_3:+52448070 Msa1109090:CDS
TGGTGGATTTCTTTATCATT+GGG 0.295425 7_3:+52446899 Msa1109090:CDS
GGGAGGAAGCTTATGCCCTT+TGG 0.303955 7_3:+52454761 Msa1109090:CDS
TTGCTGATGCTTGCAGGTGC+TGG 0.322741 7_3:+52448046 Msa1109090:CDS
GCGAGGAGGCTTATGCCCTT+TGG 0.327798 7_3:+52451205 Msa1109090:CDS
GGCAGTGAATTCAGCTTTCA+TGG 0.342800 7_3:+52446509 Msa1109090:CDS
GTTGCTTATAGAATGGCTTT+TGG 0.349898 7_3:+52446573 Msa1109090:CDS
TCCCTATCACTCTTTATCCT+TGG 0.350780 7_3:-52448001 None:intergenic
AATTCAAGGGGTGCATTCTA+TGG 0.355468 7_3:+52451021 Msa1109090:CDS
AATTCAAGGGGTGCATTCTA+TGG 0.355468 7_3:+52454577 Msa1109090:CDS
GGTTCTTGTTGCTTATAGAA+TGG 0.366948 7_3:+52446566 Msa1109090:CDS
GTAAAGGTGCACCAGCTTTA+GGG 0.372536 7_3:+52446619 Msa1109090:CDS
CCCGACGAGCAGCTCGAAAT+CGG 0.373882 7_3:+52451165 Msa1109090:CDS
AGCATCAGCAACACATTGTT+TGG 0.375545 7_3:-52448034 None:intergenic
TTCTATCTGGGAGCATTCCT+TGG 0.377365 7_3:+52449274 Msa1109090:CDS
GCTTATGCCCTTTGGGGTGA+TGG 0.380121 7_3:+52451213 Msa1109090:CDS
GGAGTGTCACCTTATGTTAA+TGG 0.386336 7_3:+52454841 Msa1109090:CDS
CCAATTCCTAAAACAATTAG+TGG 0.393680 7_3:+52451059 Msa1109090:CDS
CCAATTCCTAAAACAATTAG+TGG 0.393680 7_3:+52454615 Msa1109090:CDS
TTGTAATAGTGAGTACTTGC+AGG 0.400657 7_3:-52446672 None:intergenic
TCTCCTTTGTTTAGCCATGC+TGG 0.405364 7_3:-52446393 None:intergenic
TGGTGATGCTGCTGCTGCCA+TGG 0.410499 7_3:-52446343 None:intergenic
ATTGTGATGGGAATTCTATC+TGG 0.411310 7_3:+52449261 Msa1109090:CDS
TCTGTGATTGGAGCTGTTCA+GGG 0.412166 7_3:+52448220 Msa1109090:CDS
CCGATTTCGAGCTGCTCGTC+AGG 0.414341 7_3:-52454721 None:intergenic
CATATATTATTACCTGCTCC+TGG 0.417231 7_3:-52448271 None:intergenic
AATGTGTTGCTGATGCTTGC+AGG 0.420148 7_3:+52448040 Msa1109090:CDS
CCTGACGAGCAGCTCGAAAT+CGG 0.420213 7_3:+52454721 Msa1109090:CDS
CTATTGGGTGGCCTACTAAC+AGG 0.422381 7_3:+52450952 Msa1109090:CDS
CTATTGGGTGGCCTACTAAC+AGG 0.422381 7_3:+52454508 Msa1109090:CDS
GCTTATGCCCTTTGGGGTGA+TGG 0.427166 7_3:+52454769 Msa1109090:CDS
CTGACGAGCAGCTCGAAATC+GGG 0.432110 7_3:+52454722 Msa1109090:CDS
GACCAAGGATAAAGAGTGAT+AGG 0.433065 7_3:+52447999 Msa1109090:CDS
AGCTACGTGTAAACTGTCAT+TGG 0.433408 7_3:-52446147 None:intergenic
CCGATTTCGAGCTGCTCGTC+GGG 0.435083 7_3:-52451165 None:intergenic
TTGCAGGTGCTGGATTGTTA+TGG 0.443343 7_3:+52448056 Msa1109090:CDS
GTGATGTTGGAAGATGTTCT+TGG 0.444031 7_3:-52446371 None:intergenic
AGGCATGGTTCGTTGAATAC+TGG 0.453886 7_3:+52451255 Msa1109090:CDS
AGGCATGGTTCGTTGAATAC+TGG 0.453886 7_3:+52454811 Msa1109090:CDS
TGTTATGGATGGGTTGGTCA+GGG 0.456410 7_3:+52448071 Msa1109090:CDS
AAAGTCAAGTCTTCTACAAA+AGG 0.456657 7_3:+52449320 Msa1109090:CDS
CGGGGACGATGCGGCTCACG+GGG 0.457266 7_3:+52454741 Msa1109090:CDS
CTGGATTGTTATGGATGGGT+TGG 0.463522 7_3:+52448065 Msa1109090:CDS
TTAAAGGTTGATGACACTCT+TGG 0.466912 7_3:+52450901 Msa1109090:intron
TGGCTGGTTCTGTTCTTGGA+AGG 0.468383 7_3:+52446796 Msa1109090:CDS
CTGGTAATAGTAATCTACAT+AGG 0.472192 7_3:-52450993 None:intergenic
CTGGTAATAGTAATCTACAT+AGG 0.472192 7_3:-52454549 None:intergenic
GATGAATATTAAAGCTTGGA+TGG 0.480445 7_3:+52446818 Msa1109090:CDS
CTGCTCGTCGGGCATCCTCA+AGG 0.482168 7_3:-52451154 None:intergenic
CTGCAAGGAGTCCTGTTAGT+AGG 0.485260 7_3:-52450963 None:intergenic
CTGCAAGGAGTCCTGTTAGT+AGG 0.485260 7_3:-52454519 None:intergenic
CCCGATTTCGAGCTGCTCGT+CGG 0.486146 7_3:-52451166 None:intergenic
TTAACGTGGAGTTGAAAAGT+TGG 0.487278 7_3:-52446192 None:intergenic
ATCGGGGACGATGCGGCTCA+CGG 0.488755 7_3:+52454739 Msa1109090:CDS
GAAGGATGAATATTAAAGCT+TGG 0.489811 7_3:+52446814 Msa1109090:CDS
GGAAGATGTTCTTGGTATGC+TGG 0.493678 7_3:-52446363 None:intergenic
AGGTGCTGGATTGTTATGGA+TGG 0.496148 7_3:+52448060 Msa1109090:CDS
TTTAGCCATGCTGGTGATGT+TGG 0.504620 7_3:-52446384 None:intergenic
CTGTTAGTAGGCCACCCAAT+AGG 0.508793 7_3:-52450951 None:intergenic
CTGTTAGTAGGCCACCCAAT+AGG 0.508793 7_3:-52454507 None:intergenic
GAGTTGAAAAGTTGGATACT+TGG 0.509474 7_3:-52446184 None:intergenic
ATGGGTTGGTCAGGGTTCAA+TGG 0.509849 7_3:+52448079 Msa1109090:CDS
GATGCAACATTTGCTGCATA+TGG 0.511907 7_3:-52448109 None:intergenic
GCATAGAGAATTACTAGTCC+TGG 0.516086 7_3:-52446465 None:intergenic
CAGCAATGTTTGTTATTGGA+TGG 0.518720 7_3:+52451082 Msa1109090:CDS
CAGCAATGTTTGTTATTGGA+TGG 0.518720 7_3:+52454638 Msa1109090:CDS
ATATATTATTACCTGCTCCT+GGG 0.518776 7_3:-52448270 None:intergenic
TATTACCAGTGACAAATTCA+AGG 0.518978 7_3:+52451007 Msa1109090:CDS
TATTACCAGTGACAAATTCA+AGG 0.518978 7_3:+52454563 Msa1109090:CDS
TTCAACGAACCATGCCTAGT+TGG 0.519712 7_3:-52451249 None:intergenic
TTCAACGAACCATGCCTAGT+TGG 0.519712 7_3:-52454805 None:intergenic
ATGTAGGGCTTGTGCAATCG+TGG 0.521283 7_3:+52449232 Msa1109090:intron
TTTCACACACATGCTGTGGC+TGG 0.523309 7_3:+52450928 Msa1109090:CDS
TTTCACACACATGCTGTGGC+TGG 0.523309 7_3:+52454484 Msa1109090:CDS
GTATGTATCACCCCAGGAGC+AGG 0.525866 7_3:+52448259 Msa1109090:CDS
GTTGGTCTACAAAGCATGCC+AGG 0.526287 7_3:+52446447 Msa1109090:CDS
GGTGCATTCTATGGTGGAAG+TGG 0.527159 7_3:+52451030 Msa1109090:CDS
GGTGCATTCTATGGTGGAAG+TGG 0.527159 7_3:+52454586 Msa1109090:CDS
AGTACTCACTATTACAAGAA+TGG 0.528187 7_3:+52446678 Msa1109090:CDS
CCTCTTGCACCATTAACATA+AGG 0.528402 7_3:-52454850 None:intergenic
GGTTGGTCAGGGTTCAATGG+TGG 0.529011 7_3:+52448082 Msa1109090:CDS
GCATTCTATGGTGGAAGTGG+TGG 0.530052 7_3:+52451033 Msa1109090:CDS
GCATTCTATGGTGGAAGTGG+TGG 0.530052 7_3:+52454589 Msa1109090:CDS
GGCATAAGCCTCCTCGCCGT+GGG 0.533986 7_3:-52451199 None:intergenic
ATCGGGGACGATGCGGCCCA+CGG 0.537452 7_3:+52451183 Msa1109090:CDS
ATGACAGCAGCAACACTAGT+TGG 0.538801 7_3:+52446429 Msa1109090:CDS
GCACCCCTTGAATTTGTCAC+TGG 0.539379 7_3:-52451012 None:intergenic
GCACCCCTTGAATTTGTCAC+TGG 0.539379 7_3:-52454568 None:intergenic
GAGGAAGCTTATGCCCTTTG+GGG 0.539536 7_3:+52454763 Msa1109090:CDS
AATAGTAATCTACATAGGGC+TGG 0.541637 7_3:-52450988 None:intergenic
AATAGTAATCTACATAGGGC+TGG 0.541637 7_3:-52454544 None:intergenic
GCTGTTCAGGGTATGATGAC+TGG 0.543025 7_3:+52448232 Msa1109090:CDS
ATTACCAGTGACAAATTCAA+GGG 0.543496 7_3:+52451008 Msa1109090:CDS
ATTACCAGTGACAAATTCAA+GGG 0.543496 7_3:+52454564 Msa1109090:CDS
GGTGTTATTGATTATTCTGG+TGG 0.544017 7_3:+52446921 Msa1109090:CDS
GCTACGTGTAAACTGTCATT+GGG 0.546755 7_3:-52446146 None:intergenic
TTGTGATGGGAATTCTATCT+GGG 0.549743 7_3:+52449262 Msa1109090:CDS
ATCGTGGGCGGCTATTGTGA+TGG 0.560238 7_3:+52449248 Msa1109090:CDS
GGTGGATTTCTTTATCATTG+GGG 0.564219 7_3:+52446900 Msa1109090:CDS
CGATGCGGCCCACGGCGAGG+AGG 0.564710 7_3:+52451191 Msa1109090:CDS
TGGTAATAGTAATCTACATA+GGG 0.566028 7_3:-52450992 None:intergenic
TGGTAATAGTAATCTACATA+GGG 0.566028 7_3:-52454548 None:intergenic
TCGTGGGCGGCTATTGTGAT+GGG 0.566243 7_3:+52449249 Msa1109090:CDS
GAGGAGGCTTATGCCCTTTG+GGG 0.566272 7_3:+52451207 Msa1109090:CDS
TGCTCGTCGGGCATCCTCAA+GGG 0.567146 7_3:-52451153 None:intergenic
TGTTGATATTGAAACACCTA+TGG 0.573116 7_3:+52446701 Msa1109090:CDS
TTAAAGGTTGATGACACTCA+TGG 0.576556 7_3:+52454457 Msa1109090:intron
GGATAAAGAGTGATAGGGAA+AGG 0.577138 7_3:+52448005 Msa1109090:CDS
ATCAGCAACACATTGTTTGG+TGG 0.581081 7_3:-52448031 None:intergenic
TACATAGGGCTGGCTCTGCA+AGG 0.581821 7_3:-52450978 None:intergenic
TACATAGGGCTGGCTCTGCA+AGG 0.581821 7_3:-52454534 None:intergenic
AAATATGATCCAACTAGGCA+TGG 0.582321 7_3:+52451240 Msa1109090:CDS
AAATATGATCCAACTAGGCA+TGG 0.582321 7_3:+52454796 Msa1109090:CDS
CCTTATGTTAATGGTGCAAG+AGG 0.587708 7_3:+52454850 Msa1109090:CDS
ACCAAGGATAAAGAGTGATA+GGG 0.587771 7_3:+52448000 Msa1109090:CDS
GGGCATAAGCCTCCTCGCCG+TGG 0.588211 7_3:-52451200 None:intergenic
CAGCAACTAGTCTTCTTGTG+TGG 0.591340 7_3:+52448164 Msa1109090:CDS
TGTAGGGCTTGTGCAATCGT+GGG 0.592002 7_3:+52449233 Msa1109090:intron
CTGCTCGTCAGGCATCCTCA+AGG 0.593904 7_3:-52454710 None:intergenic
GGTGCTGGATTGTTATGGAT+GGG 0.594178 7_3:+52448061 Msa1109090:CDS
AAATAAACAAGTGAAGCCAT+AGG 0.597753 7_3:-52446738 None:intergenic
TATAACAAGGAGAATGATTG+TGG 0.603882 7_3:-52451118 None:intergenic
TATAACAAGGAGAATGATTG+TGG 0.603882 7_3:-52454674 None:intergenic
GCTGTGGCTGGCCTATTGGG+TGG 0.604590 7_3:+52450940 Msa1109090:CDS
GCTGTGGCTGGCCTATTGGG+TGG 0.604590 7_3:+52454496 Msa1109090:CDS
TATATTATTACCTGCTCCTG+GGG 0.609021 7_3:-52448269 None:intergenic
GGACGATGCGGCTCACGGGG+AGG 0.610613 7_3:+52454744 Msa1109090:CDS
TGCTCGTCAGGCATCCTCAA+GGG 0.613907 7_3:-52454709 None:intergenic
TCGTTGAATACTGGTAACAC+TGG 0.616643 7_3:+52451264 Msa1109090:CDS
TCGTTGAATACTGGTAACAC+TGG 0.616643 7_3:+52454820 Msa1109090:CDS
GGTGCACCTTTACCCCAGAA+AGG 0.618916 7_3:-52446609 None:intergenic
TGAACAGCTCCAATCACAGA+AGG 0.622407 7_3:-52448217 None:intergenic
ATCTTCCAACATCACCAGCA+TGG 0.625038 7_3:+52446379 Msa1109090:CDS
TCAAGGGGTGCATTCTATGG+TGG 0.628215 7_3:+52451024 Msa1109090:CDS
TCAAGGGGTGCATTCTATGG+TGG 0.628215 7_3:+52454580 Msa1109090:CDS
TGACGAGCAGCTCGAAATCG+GGG 0.633869 7_3:+52454723 Msa1109090:CDS
GTATGAATAGTTGTATAACA+AGG 0.633966 7_3:-52451131 None:intergenic
GTATGAATAGTTGTATAACA+AGG 0.633966 7_3:-52454687 None:intergenic
AACAAGGAGAATGATTGTGG+TGG 0.634525 7_3:-52451115 None:intergenic
AACAAGGAGAATGATTGTGG+TGG 0.634525 7_3:-52454671 None:intergenic
CGACGAGCAGCTCGAAATCG+GGG 0.635852 7_3:+52451167 Msa1109090:CDS
GGACTTGTATGTATCACCCC+AGG 0.638350 7_3:+52448253 Msa1109090:CDS
AAAGAAAACAACATCAAGAG+AGG 0.638741 7_3:-52448188 None:intergenic
GCTCGAAATCGGGGACGATG+CGG 0.642035 7_3:+52451176 Msa1109090:CDS
GCTCGAAATCGGGGACGATG+CGG 0.643288 7_3:+52454732 Msa1109090:CDS
AGGGCTTGTGCAATCGTGGG+CGG 0.644338 7_3:+52449236 Msa1109090:intron
TACAACTATTCATACCCTTG+AGG 0.649090 7_3:+52451139 Msa1109090:CDS
TACAACTATTCATACCCTTG+AGG 0.649090 7_3:+52454695 Msa1109090:CDS
TAAACAAAGGAGACAACGCA+TGG 0.662515 7_3:+52446403 Msa1109090:CDS
TCACCAGCATGGCTAAACAA+AGG 0.671383 7_3:+52446390 Msa1109090:CDS
ATTATGTGCAGGTTGGACCA+AGG 0.677592 7_3:+52447984 Msa1109090:intron
AAGATCATCATGGAGAACCA+AGG 0.681910 7_3:-52449291 None:intergenic
AGACTTGAACAAAAGAACCA+TGG 0.689781 7_3:+52446326 Msa1109090:exon
TATAATGAAATGAATTAACG+TGG 0.695308 7_3:-52446206 None:intergenic
AGTATTTCACACACATGCTG+TGG 0.697237 7_3:+52450924 Msa1109090:CDS
TTACCAGTGACAAATTCAAG+GGG 0.721655 7_3:+52451009 Msa1109090:CDS
TTACCAGTGACAAATTCAAG+GGG 0.721655 7_3:+52454565 Msa1109090:CDS
AGTATTTCACACACATGCTG+TGG 0.745358 7_3:+52454480 Msa1109090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAAAAAATATAATAAA+AGG + chr7_3:52447232-52447251 Msa1109090:intron 0.0%
!!! TAATTTTGCTTAAAAATTTA+AGG + chr7_3:52447061-52447080 Msa1109090:intron 10.0%
!!! AATTTTGCTTAAAAATTTAA+GGG + chr7_3:52447062-52447081 Msa1109090:intron 10.0%
!!! TTAAAAGATTAGTTTATTAA+GGG - chr7_3:52448822-52448841 None:intergenic 10.0%
!!! TTTAAAAGATTAGTTTATTA+AGG - chr7_3:52448823-52448842 None:intergenic 10.0%
!!! TAGATTTTTTTTTTTACAAT+CGG - chr7_3:52449530-52449549 None:intergenic 10.0%
!! TTAAAAGAAAATATATGAAA+AGG + chr7_3:52449960-52449979 Msa1109090:intron 10.0%
!! AACAAATAAAAAAAATTACA+TGG - chr7_3:52450280-52450299 None:intergenic 10.0%
!!! TAATTTTTTTTATTTGTTTC+AGG + chr7_3:52450282-52450301 Msa1109090:intron 10.0%
!!! AATTTTTTTTATTTGTTTCA+GGG + chr7_3:52450283-52450302 Msa1109090:intron 10.0%
!! AAAAACTTATAAAAATTGTT+TGG - chr7_3:52451840-52451859 None:intergenic 10.0%
!!! ATATCGATATTTTTTTTAAA+AGG - chr7_3:52452257-52452276 None:intergenic 10.0%
!! TATAAATAAAATAATGTTTG+GGG + chr7_3:52452319-52452338 Msa1109090:intron 10.0%
!! TAAAAGCAAATATAAAATAA+AGG + chr7_3:52452967-52452986 Msa1109090:intron 10.0%
!! ACAAATAAAAAAAAATTACA+TGG - chr7_3:52453805-52453824 None:intergenic 10.0%
!!! AATTTTTTTTTATTTGTTTC+AGG + chr7_3:52453808-52453827 Msa1109090:intron 10.0%
!!! ATTTTTTTTTATTTGTTTCA+GGG + chr7_3:52453809-52453828 Msa1109090:intron 10.0%
!!! ATTTTGCTTAAAAATTTAAG+GGG + chr7_3:52447063-52447082 Msa1109090:intron 15.0%
!!! TAAAAGATTAGTTTATTAAG+GGG - chr7_3:52448821-52448840 None:intergenic 15.0%
!! ATAAAATTCATATTTCGATT+GGG - chr7_3:52448885-52448904 None:intergenic 15.0%
!! TATAAAATTCATATTTCGAT+TGG - chr7_3:52448886-52448905 None:intergenic 15.0%
!!! AGTATAGCTTAATTATATTT+TGG + chr7_3:52449394-52449413 Msa1109090:intron 15.0%
!! TTATATTAATTATAAGAAGG+AGG - chr7_3:52449937-52449956 None:intergenic 15.0%
!!! AAGTAAGTTTTTTTTTTCTA+GGG + chr7_3:52450151-52450170 Msa1109090:intron 15.0%
!!! GTGTTTTTAATATAAAAAAG+AGG - chr7_3:52450347-52450366 None:intergenic 15.0%
!!! AAATGAACAAAATTTGATTT+TGG - chr7_3:52450421-52450440 None:intergenic 15.0%
!!! TGCTTTTTTTTTTGTATTAA+AGG + chr7_3:52450885-52450904 Msa1109090:intron 15.0%
!!! AAATATCGATATTTTTATGT+CGG + chr7_3:52452265-52452284 Msa1109090:intron 15.0%
!! TTATATTAATTATAAGAAGG+AGG - chr7_3:52449937-52449956 None:intergenic 15.0%
!! TTAAAAGAAAATACATGAAA+AGG + chr7_3:52453512-52453531 Msa1109090:intron 15.0%
!!! AAATGAACAAAATTTGATTT+TGG - chr7_3:52450421-52450440 None:intergenic 15.0%
!! TTCTCTCAAAAAAAAAATTA+AGG - chr7_3:52454402-52454421 None:intergenic 15.0%
!! TATAATGAAATGAATTAACG+TGG - chr7_3:52446209-52446228 None:intergenic 20.0%
!!! TGAATCAGTTTTTGATTTTT+TGG - chr7_3:52446238-52446257 None:intergenic 20.0%
!!! CTTATTTTTTCTTATACTGT+TGG + chr7_3:52446858-52446877 Msa1109090:CDS 20.0%
!! TTAATCTTTCTTTCATCATT+TGG + chr7_3:52447000-52447019 Msa1109090:intron 20.0%
!! TAATCTTTCTTTCATCATTT+GGG + chr7_3:52447001-52447020 Msa1109090:intron 20.0%
!! TTTAAGCAAAATTAGATGAA+GGG - chr7_3:52447055-52447074 None:intergenic 20.0%
!!! TTTTAAGCAAAATTAGATGA+AGG - chr7_3:52447056-52447075 None:intergenic 20.0%
!! TTTAAGCAAAATTAGATGAA+GGG - chr7_3:52447055-52447074 None:intergenic 20.0%
!!! TTTTAAGCAAAATTAGATGA+AGG - chr7_3:52447056-52447075 None:intergenic 20.0%
!!! TTCATCTAATTTTGCTTAAA+AGG + chr7_3:52447055-52447074 Msa1109090:intron 20.0%
!!! TCATCTAATTTTGCTTAAAA+GGG + chr7_3:52447056-52447075 Msa1109090:intron 20.0%
!! ATCTATAAATTAATTGCCAT+TGG + chr7_3:52447584-52447603 Msa1109090:intron 20.0%
!!! TCATTTTTGGTATAGAAATT+TGG + chr7_3:52447938-52447957 Msa1109090:intron 20.0%
!!! ATTTGGTGTTTTTATTATTG+TGG + chr7_3:52447955-52447974 Msa1109090:intron 20.0%
!! TAAAATTCATATTTCGATTG+GGG - chr7_3:52448884-52448903 None:intergenic 20.0%
!! TATAGAATAGAAACTCATTT+AGG + chr7_3:52448908-52448927 Msa1109090:intron 20.0%
!! TATCATAATGATTCAATTAG+TGG + chr7_3:52449159-52449178 Msa1109090:intron 20.0%
!!! ATATCTAGTAATTCTTTTGA+AGG + chr7_3:52449424-52449443 Msa1109090:intron 20.0%
!! TTATAAAAATATACCACCTT+AGG - chr7_3:52449669-52449688 None:intergenic 20.0%
!!! CTATTTTTCAACATTAAACA+AGG - chr7_3:52449788-52449807 None:intergenic 20.0%
!! TGTTTAAAAAAGAATGAAAG+TGG - chr7_3:52449872-52449891 None:intergenic 20.0%
!!! CTTTCATTCTTTTTTAAACA+AGG + chr7_3:52449872-52449891 Msa1109090:intron 20.0%
!!! GAAGTAAGTTTTTTTTTTCT+AGG + chr7_3:52450150-52450169 Msa1109090:intron 20.0%
!!! TCATTTGTGTTTAATCATTT+TGG + chr7_3:52450641-52450660 Msa1109090:intron 20.0%
!! ATCAGATATAACAAGTTTAA+AGG + chr7_3:52450714-52450733 Msa1109090:intron 20.0%
!!! AAAAAAAGCACAACAAATTA+AGG - chr7_3:52450875-52450894 None:intergenic 20.0%
!!! AATATCGATATTTTTATGTC+GGG + chr7_3:52452266-52452285 Msa1109090:intron 20.0%
!!! AAGTTAGACAAGTTTTATAA+TGG + chr7_3:52452490-52452509 Msa1109090:intron 20.0%
!! AAAATAAAGGAACAAAATTG+AGG + chr7_3:52452980-52452999 Msa1109090:intron 20.0%
!!! AATTTTTCTAACATTGAACA+AGG - chr7_3:52453342-52453361 None:intergenic 20.0%
!! TGTTTAAAAAAGAATGAAAG+TGG - chr7_3:52449872-52449891 None:intergenic 20.0%
!!! CTTTCATTCTTTTTTAAACA+AGG + chr7_3:52449872-52449891 Msa1109090:intron 20.0%
!!! TGGATTTTTCTGTTTAAAAT+AGG + chr7_3:52453596-52453615 Msa1109090:intron 20.0%
!!! TTTTCTGTTTAAAATAGGTT+TGG + chr7_3:52453601-52453620 Msa1109090:intron 20.0%
!! TGAAATTGTCAAAAAATAGT+TGG + chr7_3:52450109-52450128 Msa1109090:intron 20.0%
!! GAAATTGTCAAAAAATAGTT+GGG + chr7_3:52450110-52450129 Msa1109090:intron 20.0%
!! ATGTTTAATTCCTATTAAAC+CGG + chr7_3:52453765-52453784 Msa1109090:intron 20.0%
!!! TGCGTTTTTAATATAAAAAG+AGG - chr7_3:52453873-52453892 None:intergenic 20.0%
!! ATCAGATATAACAAGTTTAA+AGG + chr7_3:52450714-52450733 Msa1109090:intron 20.0%
!!! AAAAAAAGCACAACAAATTA+AGG - chr7_3:52450875-52450894 None:intergenic 20.0%
!!! TTGTGCTTTTTTTGTATTAA+AGG + chr7_3:52454441-52454460 Msa1109090:intron 20.0%
! AAGCATAGTGAAAAAGAAAT+GGG + chr7_3:52446488-52446507 Msa1109090:CDS 25.0%
!! TGCTATTACTATGATTTTGT+TGG + chr7_3:52446776-52446795 Msa1109090:CDS 25.0%
! TAAGAAAAAATAAGCCAAAG+AGG - chr7_3:52446852-52446871 None:intergenic 25.0%
! TATGTTATTCATCTTTCTTC+TGG + chr7_3:52446945-52446964 Msa1109090:CDS 25.0%
! AATCTTTCTTTCATCATTTG+GGG + chr7_3:52447002-52447021 Msa1109090:intron 25.0%
! CATATGAATGTATGATGAAA+GGG - chr7_3:52447095-52447114 None:intergenic 25.0%
! ACATATGAATGTATGATGAA+AGG - chr7_3:52447096-52447115 None:intergenic 25.0%
! CTGAAATAAGTGAATTCAAA+GGG + chr7_3:52447405-52447424 Msa1109090:intron 25.0%
! AAAATTAGTTGAATGGTAGT+TGG - chr7_3:52447481-52447500 None:intergenic 25.0%
! TCTAAGCAAAATTAGTTGAA+TGG - chr7_3:52447488-52447507 None:intergenic 25.0%
!! ATTCAACTAATTTTGCTTAG+AGG + chr7_3:52447487-52447506 Msa1109090:intron 25.0%
!! TTCAACTAATTTTGCTTAGA+GGG + chr7_3:52447488-52447507 Msa1109090:intron 25.0%
! TATAAATTAATTGCCATTGG+TGG + chr7_3:52447587-52447606 Msa1109090:intron 25.0%
!!! ATAAGTACCGAGAAAATATA+CGG - chr7_3:52447918-52447937 None:intergenic 25.0%
! TAGTCAATTTATCGAAATCA+TGG + chr7_3:52448653-52448672 Msa1109090:intron 25.0%
! TAAGAGCTTCAATAAAATTG+TGG - chr7_3:52448684-52448703 None:intergenic 25.0%
!! TCAGTATATTACTTAAGTTG+TGG + chr7_3:52448790-52448809 Msa1109090:intron 25.0%
! TTATGACTTAAACTCAAAAG+AGG - chr7_3:52448850-52448869 None:intergenic 25.0%
! TCAAAAACATTCACTGAAAT+TGG + chr7_3:52449057-52449076 Msa1109090:intron 25.0%
! TGAACATTTATTGCTGAAAT+TGG + chr7_3:52449092-52449111 Msa1109090:intron 25.0%
! GAACATTTATTGCTGAAATT+GGG + chr7_3:52449093-52449112 Msa1109090:intron 25.0%
!! ATACTAACAAAAAGTACAGT+AGG + chr7_3:52449133-52449152 Msa1109090:intron 25.0%
! TTGTTGACAATTAATGTGAA+TGG + chr7_3:52449197-52449216 Msa1109090:intron 25.0%
!!! TAGTAATTCTTTTGAAGGAT+AGG + chr7_3:52449429-52449448 Msa1109090:intron 25.0%
!!! AGTAATTCTTTTGAAGGATA+GGG + chr7_3:52449430-52449449 Msa1109090:intron 25.0%
!! TTGGAATTTGGAATCAATAT+TGG - chr7_3:52449828-52449847 None:intergenic 25.0%
! AAAAGAAAGTTGTTGGAATT+TGG - chr7_3:52449840-52449859 None:intergenic 25.0%
! CATAAGAAAAAGAAAGTTGT+TGG - chr7_3:52449847-52449866 None:intergenic 25.0%
!! CAACAACTTTCTTTTTCTTA+TGG + chr7_3:52449845-52449864 Msa1109090:intron 25.0%
!!! ATTTCTTTTGCTGGTTTTAT+AGG - chr7_3:52450253-52450272 None:intergenic 25.0%
! ATAAAACCAGCAAAAGAAAT+TGG + chr7_3:52450253-52450272 Msa1109090:intron 25.0%
! GAATTCAAGAAATGTTAGAA+AGG - chr7_3:52450481-52450500 None:intergenic 25.0%
!!! TAGTTTGAAATTTTGTGTGA+TGG - chr7_3:52450587-52450606 None:intergenic 25.0%
! TGGTAATAGTAATCTACATA+GGG - chr7_3:52450995-52451014 None:intergenic 25.0%
! GTATGAATAGTTGTATAACA+AGG - chr7_3:52451134-52451153 None:intergenic 25.0%
! GTACAAAATGTCAAAATTCA+AGG - chr7_3:52451461-52451480 None:intergenic 25.0%
! TGATGTATCTATGAAGTTAT+AGG + chr7_3:52451506-52451525 Msa1109090:intron 25.0%
! CAGAAAATTTCTTGTAGAAT+TGG + chr7_3:52451559-52451578 Msa1109090:intron 25.0%
!! ACTTGACTTAAAGCAATTTT+GGG - chr7_3:52451765-52451784 None:intergenic 25.0%
!! TACTTGACTTAAAGCAATTT+TGG - chr7_3:52451766-52451785 None:intergenic 25.0%
! AAAATGCATCTTGTTGATAT+AGG + chr7_3:52451809-52451828 Msa1109090:intron 25.0%
! TGGATCTGTTTAAAAAGAAT+TGG - chr7_3:52452114-52452133 None:intergenic 25.0%
!! CTTTTTAAACAGATCCAATT+TGG + chr7_3:52452117-52452136 Msa1109090:intron 25.0%
! ATACCAAAATCGTAATCAAA+AGG - chr7_3:52452148-52452167 None:intergenic 25.0%
!!! ATATCGATATTTTTATGTCG+GGG + chr7_3:52452267-52452286 Msa1109090:intron 25.0%
! AAATAAAATAATGTTTGGGG+TGG + chr7_3:52452322-52452341 Msa1109090:intron 25.0%
! GTAGTATATTCCAATGTTAA+AGG + chr7_3:52449714-52449733 Msa1109090:intron 25.0%
! TAAACTTTGTCCTTTAACAT+TGG - chr7_3:52453280-52453299 None:intergenic 25.0%
! AATGTTAAAGGACAAAGTTT+AGG + chr7_3:52453279-52453298 Msa1109090:intron 25.0%
!! TGGAATTTGGAATCAAATAT+TGG - chr7_3:52453384-52453403 None:intergenic 25.0%
! AAAAGAAAGTTGTTGGAATT+TGG - chr7_3:52449840-52449859 None:intergenic 25.0%
! CATAAGAAAAAGAAAGTTGT+TGG - chr7_3:52449847-52449866 None:intergenic 25.0%
!! CAACAACTTTCTTTTTCTTA+TGG + chr7_3:52449845-52449864 Msa1109090:intron 25.0%
!!! AGAAGTAAGTTTTTTGTTTG+AGG + chr7_3:52453674-52453693 Msa1109090:intron 25.0%
!!! GAAGTAAGTTTTTTGTTTGA+GGG + chr7_3:52453675-52453694 Msa1109090:intron 25.0%
! TGGTAATAGTAATCTACATA+GGG - chr7_3:52450995-52451014 None:intergenic 25.0%
! GTATGAATAGTTGTATAACA+AGG - chr7_3:52451134-52451153 None:intergenic 25.0%
CAAGCATAGTGAAAAAGAAA+TGG + chr7_3:52446487-52446506 Msa1109090:CDS 30.0%
! TGATCAACTTTTACCTTTCT+GGG + chr7_3:52446596-52446615 Msa1109090:CDS 30.0%
AGTACTCACTATTACAAGAA+TGG + chr7_3:52446678-52446697 Msa1109090:CDS 30.0%
TGTTGATATTGAAACACCTA+TGG + chr7_3:52446701-52446720 Msa1109090:CDS 30.0%
AAATAAACAAGTGAAGCCAT+AGG - chr7_3:52446741-52446760 None:intergenic 30.0%
! ATTACTATGATTTTGTTGGC+TGG + chr7_3:52446780-52446799 Msa1109090:CDS 30.0%
GAAGGATGAATATTAAAGCT+TGG + chr7_3:52446814-52446833 Msa1109090:CDS 30.0%
GATGAATATTAAAGCTTGGA+TGG + chr7_3:52446818-52446837 Msa1109090:CDS 30.0%
!! TGGTGGATTTCTTTATCATT+GGG + chr7_3:52446899-52446918 Msa1109090:CDS 30.0%
! ACTGTTTTCATAACCTATCT+TGG + chr7_3:52447280-52447299 Msa1109090:intron 30.0%
GCTGAAATAAGTGAATTCAA+AGG + chr7_3:52447404-52447423 Msa1109090:intron 30.0%
!!! GGTACTTTCACTTTTTTCAT+GGG + chr7_3:52447509-52447528 Msa1109090:intron 30.0%
!!! GTACTTTCACTTTTTTCATG+GGG + chr7_3:52447510-52447529 Msa1109090:intron 30.0%
ATTGAAAGAGCTAGAGTAAT+TGG - chr7_3:52447796-52447815 None:intergenic 30.0%
! TCTCGGTACTTATTCATTTT+TGG + chr7_3:52447925-52447944 Msa1109090:intron 30.0%
AAAGAAAACAACATCAAGAG+AGG - chr7_3:52448191-52448210 None:intergenic 30.0%
!!! TCTCTTGATGTTGTTTTCTT+TGG + chr7_3:52448190-52448209 Msa1109090:CDS 30.0%
!!! CTCTTGATGTTGTTTTCTTT+GGG + chr7_3:52448191-52448210 Msa1109090:CDS 30.0%
ATATATTATTACCTGCTCCT+GGG - chr7_3:52448273-52448292 None:intergenic 30.0%
ATGCATCACTTTCTTATTGT+AGG + chr7_3:52448291-52448310 Msa1109090:intron 30.0%
TAATCATGCTACTCATGTAT+TGG - chr7_3:52448391-52448410 None:intergenic 30.0%
TAAATTGTGTTTAAGTCGTG+AGG + chr7_3:52448451-52448470 Msa1109090:intron 30.0%
AAATTGTGTTTAAGTCGTGA+GGG + chr7_3:52448452-52448471 Msa1109090:intron 30.0%
!!! GTCTGAATGAACTAGTTTTT+TGG + chr7_3:52448474-52448493 Msa1109090:intron 30.0%
CGAAAAGACTAACTACTAAT+AGG + chr7_3:52448558-52448577 Msa1109090:intron 30.0%
TCAATTTATCGAAATCATGG+TGG + chr7_3:52448656-52448675 Msa1109090:intron 30.0%
TTTGACAAAATTACGGTGAA+CGG - chr7_3:52448731-52448750 None:intergenic 30.0%
TGGTGAGTTTGACAAAATTA+CGG - chr7_3:52448738-52448757 None:intergenic 30.0%
GAATAGAAACTCATTTAGGT+TGG + chr7_3:52448912-52448931 Msa1109090:intron 30.0%
! CTTTTTATGCAAGATCATCA+TGG - chr7_3:52449304-52449323 None:intergenic 30.0%
AAAGTCAAGTCTTCTACAAA+AGG + chr7_3:52449320-52449339 Msa1109090:CDS 30.0%
TTAAGCTATACTATAGTGAG+TGG - chr7_3:52449386-52449405 None:intergenic 30.0%
!! GTAATTCTTTTGAAGGATAG+GGG + chr7_3:52449431-52449450 Msa1109090:intron 30.0%
TTCTTAATCAATTCCAGTCT+TGG - chr7_3:52449559-52449578 None:intergenic 30.0%
TATACATGAATAGTTGCCTA+AGG + chr7_3:52449650-52449669 Msa1109090:intron 30.0%
TATACATGAATAGTTGCCTA+AGG + chr7_3:52449650-52449669 Msa1109090:intron 30.0%
ACATTGGAATATACTACCTT+AGG - chr7_3:52449711-52449730 None:intergenic 30.0%
GGTAGTATATTCCAATGTTA+AGG + chr7_3:52449713-52449732 Msa1109090:intron 30.0%
CAATGTTAAGGATGAAGTTT+GGG + chr7_3:52449725-52449744 Msa1109090:intron 30.0%
AATTATAAGAAGGAGGATGA+AGG - chr7_3:52449930-52449949 None:intergenic 30.0%
!! TGGACTTTTCTGTTTGAAAT+AGG + chr7_3:52450073-52450092 Msa1109090:intron 30.0%
TAACTGCACAACTTAATGAA+TGG - chr7_3:52450695-52450714 None:intergenic 30.0%
TACAAACCTATATAGATGAG+TGG - chr7_3:52450781-52450800 None:intergenic 30.0%
GATAAATGATCGCGAAATAA+CGG - chr7_3:52450831-52450850 None:intergenic 30.0%
GATAAATGATCGCGAAATTA+AGG - chr7_3:52450853-52450872 None:intergenic 30.0%
CTGGTAATAGTAATCTACAT+AGG - chr7_3:52450996-52451015 None:intergenic 30.0%
TATTACCAGTGACAAATTCA+AGG + chr7_3:52451007-52451026 Msa1109090:CDS 30.0%
ATTACCAGTGACAAATTCAA+GGG + chr7_3:52451008-52451027 Msa1109090:CDS 30.0%
!!! CCACTAATTGTTTTAGGAAT+TGG - chr7_3:52451062-52451081 None:intergenic 30.0%
CCAATTCCTAAAACAATTAG+TGG + chr7_3:52451059-52451078 Msa1109090:CDS 30.0%
TATAACAAGGAGAATGATTG+TGG - chr7_3:52451121-52451140 None:intergenic 30.0%
GAGAAAAATATGATCCAACT+AGG + chr7_3:52451235-52451254 Msa1109090:CDS 30.0%
TCACAATTATAGGTTGTGTA+TGG + chr7_3:52451343-52451362 Msa1109090:intron 30.0%
AATTATAGGTTGTGTATGGA+AGG + chr7_3:52451347-52451366 Msa1109090:intron 30.0%
!!! CTCAAGTTTTGAGATCAATT+TGG + chr7_3:52451409-52451428 Msa1109090:intron 30.0%
!!! AGAAATTTTCTGAAGCTTTC+AGG - chr7_3:52451551-52451570 None:intergenic 30.0%
!!! ACTTAAAGCAATTTTGGGAT+GGG - chr7_3:52451760-52451779 None:intergenic 30.0%
GAATTGGTGAATAATGAGAT+TGG - chr7_3:52452098-52452117 None:intergenic 30.0%
ATCAAAAGGTGAATCCAAAT+TGG - chr7_3:52452134-52452153 None:intergenic 30.0%
!! TCACCTTTTGATTACGATTT+TGG + chr7_3:52452142-52452161 Msa1109090:intron 30.0%
!! TATCGATATTTTTATGTCGG+GGG + chr7_3:52452268-52452287 Msa1109090:intron 30.0%
TTCTTAATCAATTCCAGTCT+TGG - chr7_3:52449559-52449578 None:intergenic 30.0%
TATACATGAATAGTTGCCTA+AGG + chr7_3:52449650-52449669 Msa1109090:intron 30.0%
ACATTGGAATATACTACCTT+AGG - chr7_3:52449711-52449730 None:intergenic 30.0%
AATCAAATATTGGAAACCTG+GGG - chr7_3:52453374-52453393 None:intergenic 30.0%
GAATCAAATATTGGAAACCT+GGG - chr7_3:52453375-52453394 None:intergenic 30.0%
AATTATAAGAAGGAGGATGA+AGG - chr7_3:52449930-52449949 None:intergenic 30.0%
!!! ATTTCTTTTGCCGGTTTAAT+AGG - chr7_3:52453778-52453797 None:intergenic 30.0%
ATTAAACCGGCAAAAGAAAT+TGG + chr7_3:52453778-52453797 Msa1109090:intron 30.0%
GAGTTCAAGAAATGTTAGAA+AGG - chr7_3:52454007-52454026 None:intergenic 30.0%
GATATCTAGATTTGCCTAAT+TGG + chr7_3:52454077-52454096 Msa1109090:intron 30.0%
! TAGTTTGAAATCTTGTGTGA+TGG - chr7_3:52454115-52454134 None:intergenic 30.0%
! TCCATTGTGTCTAATCATTT+TGG + chr7_3:52454169-52454188 Msa1109090:intron 30.0%
ACCAAAATGATTAGACACAA+TGG - chr7_3:52454173-52454192 None:intergenic 30.0%
GATAAATGATCGCGAAATAA+CGG - chr7_3:52450831-52450850 None:intergenic 30.0%
GATAAATGATCGCGAAATTA+AGG - chr7_3:52450853-52450872 None:intergenic 30.0%
CTGGTAATAGTAATCTACAT+AGG - chr7_3:52450996-52451015 None:intergenic 30.0%
TATTACCAGTGACAAATTCA+AGG + chr7_3:52451007-52451026 Msa1109090:CDS 30.0%
ATTACCAGTGACAAATTCAA+GGG + chr7_3:52451008-52451027 Msa1109090:CDS 30.0%
!!! CCACTAATTGTTTTAGGAAT+TGG - chr7_3:52451062-52451081 None:intergenic 30.0%
CCAATTCCTAAAACAATTAG+TGG + chr7_3:52451059-52451078 Msa1109090:CDS 30.0%
TATAACAAGGAGAATGATTG+TGG - chr7_3:52451121-52451140 None:intergenic 30.0%
GAGAAAAATATGATCCAACT+AGG + chr7_3:52451235-52451254 Msa1109090:CDS 30.0%
GGATACTTGGTCTGAATATT+TGG - chr7_3:52446174-52446193 None:intergenic 35.0%
GAGTTGAAAAGTTGGATACT+TGG - chr7_3:52446187-52446206 None:intergenic 35.0%
TTAACGTGGAGTTGAAAAGT+TGG - chr7_3:52446195-52446214 None:intergenic 35.0%
AGACTTGAACAAAAGAACCA+TGG + chr7_3:52446326-52446345 Msa1109090:exon 35.0%
!! TTGCAGCAGTTTTAATCTGT+TGG + chr7_3:52446544-52446563 Msa1109090:CDS 35.0%
!! TGCAGCAGTTTTAATCTGTT+GGG + chr7_3:52446545-52446564 Msa1109090:CDS 35.0%
! GGTTCTTGTTGCTTATAGAA+TGG + chr7_3:52446566-52446585 Msa1109090:CDS 35.0%
! GTTGCTTATAGAATGGCTTT+TGG + chr7_3:52446573-52446592 Msa1109090:CDS 35.0%
! GTGATCAACTTTTACCTTTC+TGG + chr7_3:52446595-52446614 Msa1109090:CDS 35.0%
! GATCAACTTTTACCTTTCTG+GGG + chr7_3:52446597-52446616 Msa1109090:CDS 35.0%
! AGAAATTTTTGCCCTAAAGC+TGG - chr7_3:52446633-52446652 None:intergenic 35.0%
TTGTAATAGTGAGTACTTGC+AGG - chr7_3:52446675-52446694 None:intergenic 35.0%
GGAAAAAAAGGTTCTTCCAT+AGG - chr7_3:52446720-52446739 None:intergenic 35.0%
!!! GGAAGAACCTTTTTTTCCTA+TGG + chr7_3:52446722-52446741 Msa1109090:CDS 35.0%
AGTGAAGCCATAGGAAAAAA+AGG - chr7_3:52446732-52446751 None:intergenic 35.0%
!! TGTTGGTGCTTTTAGTCTTT+GGG + chr7_3:52446875-52446894 Msa1109090:CDS 35.0%
!! GTGGTGGATTTCTTTATCAT+TGG + chr7_3:52446898-52446917 Msa1109090:CDS 35.0%
! GGTGGATTTCTTTATCATTG+GGG + chr7_3:52446900-52446919 Msa1109090:CDS 35.0%
!! TGGGGTGTTATTGATTATTC+TGG + chr7_3:52446918-52446937 Msa1109090:CDS 35.0%
!! GGTGTTATTGATTATTCTGG+TGG + chr7_3:52446921-52446940 Msa1109090:CDS 35.0%
TGAATGTATGATGAAAGGGA+GGG - chr7_3:52447091-52447110 None:intergenic 35.0%
ATGAATGTATGATGAAAGGG+AGG - chr7_3:52447092-52447111 None:intergenic 35.0%
!!! TTTTTTGCTCCATGAAGGAA+GGG - chr7_3:52447447-52447466 None:intergenic 35.0%
!!! GAAACTTTTTTGCTCCATGA+AGG - chr7_3:52447452-52447471 None:intergenic 35.0%
!!! GGGTACTTTCACTTTTTTCA+TGG + chr7_3:52447508-52447527 Msa1109090:intron 35.0%
! AATTAATTGCCATTGGTGGT+TGG + chr7_3:52447591-52447610 Msa1109090:intron 35.0%
ACTGTGATTGTGATTGCAAT+TGG + chr7_3:52447721-52447740 Msa1109090:intron 35.0%
AGCTAGAGTAATTGGTTGAT+GGG - chr7_3:52447788-52447807 None:intergenic 35.0%
TTCAATCAAATCTCAACCGT+TGG + chr7_3:52447810-52447829 Msa1109090:intron 35.0%
GAACGGTTGAATTAATCCAA+CGG - chr7_3:52447829-52447848 None:intergenic 35.0%
TAAGAGATCAACACTCTGAA+CGG - chr7_3:52447846-52447865 None:intergenic 35.0%
! TCCAACTCCGTATATTTTCT+CGG + chr7_3:52447908-52447927 Msa1109090:intron 35.0%
TGTGGAAACAAATTATGTGC+AGG + chr7_3:52447973-52447992 Msa1109090:intron 35.0%
GAAACAAATTATGTGCAGGT+TGG + chr7_3:52447977-52447996 Msa1109090:intron 35.0%
ACCAAGGATAAAGAGTGATA+GGG + chr7_3:52448000-52448019 Msa1109090:CDS 35.0%
TATATTATTACCTGCTCCTG+GGG - chr7_3:52448272-52448291 None:intergenic 35.0%
CATATATTATTACCTGCTCC+TGG - chr7_3:52448274-52448293 None:intergenic 35.0%
AAAAGGGAGATGCAATGTTA+TGG + chr7_3:52448604-52448623 Msa1109090:intron 35.0%
ACTCGATGTGTTTGTATTCA+TGG - chr7_3:52448758-52448777 None:intergenic 35.0%
! ATTTTGAACCTGAAACCTTG+AGG - chr7_3:52448976-52448995 None:intergenic 35.0%
TTCACTGAAATTGGAGAAAG+TGG + chr7_3:52449066-52449085 Msa1109090:intron 35.0%
GTCAACAAAAACTGCAACTA+TGG - chr7_3:52449185-52449204 None:intergenic 35.0%
! ATTGTGATGGGAATTCTATC+TGG + chr7_3:52449261-52449280 Msa1109090:CDS 35.0%
! TTGTGATGGGAATTCTATCT+GGG + chr7_3:52449262-52449281 Msa1109090:CDS 35.0%
! AAATCTAGTTTGTCCAAGAC+TGG + chr7_3:52449543-52449562 Msa1109090:intron 35.0%
CCAAACTTCATCCTTAACAT+TGG - chr7_3:52449727-52449746 None:intergenic 35.0%
CCAATGTTAAGGATGAAGTT+TGG + chr7_3:52449724-52449743 Msa1109090:intron 35.0%
GAATCAATATTGGAAACCTG+GGG - chr7_3:52449818-52449837 None:intergenic 35.0%
GGAATCAATATTGGAAACCT+GGG - chr7_3:52449819-52449838 None:intergenic 35.0%
TGGAATCAATATTGGAAACC+TGG - chr7_3:52449820-52449839 None:intergenic 35.0%
!! TACACTCTACTTTTCTTGCT+TGG + chr7_3:52450053-52450072 Msa1109090:intron 35.0%
! GGTGATATTTGAGACTCATT+AGG - chr7_3:52450566-52450585 None:intergenic 35.0%
TTCGATCCACTCATCTATAT+AGG + chr7_3:52450772-52450791 Msa1109090:intron 35.0%
!! TTAAAGGTTGATGACACTCT+TGG + chr7_3:52450901-52450920 Msa1109090:intron 35.0%
AATAGTAATCTACATAGGGC+TGG - chr7_3:52450991-52451010 None:intergenic 35.0%
TTACCAGTGACAAATTCAAG+GGG + chr7_3:52451009-52451028 Msa1109090:CDS 35.0%
! TTGCTGCCACTAATTGTTTT+AGG - chr7_3:52451068-52451087 None:intergenic 35.0%
!! CAGCAATGTTTGTTATTGGA+TGG + chr7_3:52451082-52451101 Msa1109090:CDS 35.0%
TACAACTATTCATACCCTTG+AGG + chr7_3:52451139-52451158 Msa1109090:CDS 35.0%
AAATATGATCCAACTAGGCA+TGG + chr7_3:52451240-52451259 Msa1109090:CDS 35.0%
TGAGTCACACTCACAATTAT+AGG + chr7_3:52451333-52451352 Msa1109090:intron 35.0%
!! GACTTAAAGCAATTTTGGGA+TGG - chr7_3:52451761-52451780 None:intergenic 35.0%
GTATCAAAACAAATCTCTCC+CGG - chr7_3:52452055-52452074 None:intergenic 35.0%
!! ATTTGTCCTTGCTAGTCTTT+GGG - chr7_3:52452369-52452388 None:intergenic 35.0%
!! TATTTGTCCTTGCTAGTCTT+TGG - chr7_3:52452370-52452389 None:intergenic 35.0%
!! CATTCTAGAGTCAATGACTT+TGG - chr7_3:52452402-52452421 None:intergenic 35.0%
!! CAAAGTCATTGACTCTAGAA+TGG + chr7_3:52452400-52452419 Msa1109090:intron 35.0%
!!! GTTTTATAATGGACCGCAAT+AGG + chr7_3:52452501-52452520 Msa1109090:intron 35.0%
! AAATCTAGTTTGTCCAAGAC+TGG + chr7_3:52449543-52449562 Msa1109090:intron 35.0%
AAAGGACAAAGTTTAGGTGA+AGG + chr7_3:52453285-52453304 Msa1109090:intron 35.0%
GGAATCAAATATTGGAAACC+TGG - chr7_3:52453376-52453395 None:intergenic 35.0%
TCATCATGCCACTATCAAAA+TGG - chr7_3:52454039-52454058 None:intergenic 35.0%
TGACTGCACAACTTAATGAA+TGG - chr7_3:52454222-52454241 None:intergenic 35.0%
! TTCGATCGACTCATCTATAT+AGG + chr7_3:52454299-52454318 Msa1109090:intron 35.0%
!! TTAAAGGTTGATGACACTCA+TGG + chr7_3:52454457-52454476 Msa1109090:intron 35.0%
AATAGTAATCTACATAGGGC+TGG - chr7_3:52450991-52451010 None:intergenic 35.0%
TTACCAGTGACAAATTCAAG+GGG + chr7_3:52451009-52451028 Msa1109090:CDS 35.0%
! TTGCTGCCACTAATTGTTTT+AGG - chr7_3:52451068-52451087 None:intergenic 35.0%
!! CAGCAATGTTTGTTATTGGA+TGG + chr7_3:52451082-52451101 Msa1109090:CDS 35.0%
TACAACTATTCATACCCTTG+AGG + chr7_3:52451139-52451158 Msa1109090:CDS 35.0%
AAATATGATCCAACTAGGCA+TGG + chr7_3:52451240-52451259 Msa1109090:CDS 35.0%
GCTACGTGTAAACTGTCATT+GGG - chr7_3:52446149-52446168 None:intergenic 40.0%
AGCTACGTGTAAACTGTCAT+TGG - chr7_3:52446150-52446169 None:intergenic 40.0%
GTGATGTTGGAAGATGTTCT+TGG - chr7_3:52446374-52446393 None:intergenic 40.0%
TAAACAAAGGAGACAACGCA+TGG + chr7_3:52446403-52446422 Msa1109090:CDS 40.0%
GCATAGAGAATTACTAGTCC+TGG - chr7_3:52446468-52446487 None:intergenic 40.0%
!!! CTTTTACCTTTCTGGGGTAA+AGG + chr7_3:52446603-52446622 Msa1109090:CDS 40.0%
!! CTGTTGGTGCTTTTAGTCTT+TGG + chr7_3:52446874-52446893 Msa1109090:CDS 40.0%
!! GTTGGTGCTTTTAGTCTTTG+GGG + chr7_3:52446876-52446895 Msa1109090:CDS 40.0%
!! CATCTTTCTTCTGGAATTGC+TGG + chr7_3:52446954-52446973 Msa1109090:CDS 40.0%
! TGGTTTCACTGCTGCTTATT+GGG + chr7_3:52446974-52446993 Msa1109090:CDS 40.0%
TTTCACAAGCTCTCCAAGAT+AGG - chr7_3:52447296-52447315 None:intergenic 40.0%
TTTCTCAAGCAGTCTCACAA+AGG + chr7_3:52447364-52447383 Msa1109090:intron 40.0%
!!! CTTTTTTGCTCCATGAAGGA+AGG - chr7_3:52447448-52447467 None:intergenic 40.0%
! GCTAGAGTAATTGGTTGATG+GGG - chr7_3:52447787-52447806 None:intergenic 40.0%
GAGCTAGAGTAATTGGTTGA+TGG - chr7_3:52447789-52447808 None:intergenic 40.0%
!! TCAGAGTGTTGATCTCTTAG+CGG + chr7_3:52447847-52447866 Msa1109090:intron 40.0%
ACCGAGAAAATATACGGAGT+TGG - chr7_3:52447912-52447931 None:intergenic 40.0%
GACCAAGGATAAAGAGTGAT+AGG + chr7_3:52447999-52448018 Msa1109090:CDS 40.0%
TCCCTATCACTCTTTATCCT+TGG - chr7_3:52448004-52448023 None:intergenic 40.0%
GGATAAAGAGTGATAGGGAA+AGG + chr7_3:52448005-52448024 Msa1109090:CDS 40.0%
ATCAGCAACACATTGTTTGG+TGG - chr7_3:52448034-52448053 None:intergenic 40.0%
AGCATCAGCAACACATTGTT+TGG - chr7_3:52448037-52448056 None:intergenic 40.0%
! GATGCAACATTTGCTGCATA+TGG - chr7_3:52448112-52448131 None:intergenic 40.0%
TAATAGGTGAGTGAAGTCAC+CGG + chr7_3:52448574-52448593 Msa1109090:intron 40.0%
AAGTCACCGGAAAGTGAAAA+AGG + chr7_3:52448587-52448606 Msa1109090:intron 40.0%
AGTCACCGGAAAGTGAAAAA+GGG + chr7_3:52448588-52448607 Msa1109090:intron 40.0%
!! CATCTCCCTTTTTCACTTTC+CGG - chr7_3:52448596-52448615 None:intergenic 40.0%
TACCAACATGCACTTAACGT+GGG - chr7_3:52448632-52448651 None:intergenic 40.0%
ATACCAACATGCACTTAACG+TGG - chr7_3:52448633-52448652 None:intergenic 40.0%
!! ACTCATTTAGGTTGGTCTAG+TGG + chr7_3:52448920-52448939 Msa1109090:intron 40.0%
AAGATCATCATGGAGAACCA+AGG - chr7_3:52449294-52449313 None:intergenic 40.0%
ACATGAATAGTTGCCTAAGG+TGG + chr7_3:52449653-52449672 Msa1109090:intron 40.0%
TAAGGATGAAGTTTGGGTGA+AGG + chr7_3:52449731-52449750 Msa1109090:intron 40.0%
AAACATGTGACCTAGCAAAG+AGG - chr7_3:52449759-52449778 None:intergenic 40.0%
! CATGGACCAATTTCTTTTGC+TGG - chr7_3:52450262-52450281 None:intergenic 40.0%
CTTGTCTACCATTGTGATAG+TGG + chr7_3:52450503-52450522 Msa1109090:intron 40.0%
AGTATTTCACACACATGCTG+TGG + chr7_3:52450924-52450943 Msa1109090:CDS 40.0%
! AATTCAAGGGGTGCATTCTA+TGG + chr7_3:52451021-52451040 Msa1109090:CDS 40.0%
!! GTGGCAGCAATGTTTGTTAT+TGG + chr7_3:52451078-52451097 Msa1109090:CDS 40.0%
AACAAGGAGAATGATTGTGG+TGG - chr7_3:52451118-52451137 None:intergenic 40.0%
! TTTTTCTCCATCACCCCAAA+GGG - chr7_3:52451223-52451242 None:intergenic 40.0%
! ATTTTTCTCCATCACCCCAA+AGG - chr7_3:52451224-52451243 None:intergenic 40.0%
TCGTTGAATACTGGTAACAC+TGG + chr7_3:52451264-52451283 Msa1109090:CDS 40.0%
! GGAGTGTCACCTTATGTTAA+TGG + chr7_3:52451285-52451304 Msa1109090:intron 40.0%
CCTCTTGCACCATTAACATA+AGG - chr7_3:52451297-52451316 None:intergenic 40.0%
CCTTATGTTAATGGTGCAAG+AGG + chr7_3:52451294-52451313 Msa1109090:intron 40.0%
AGTCAAGTACGCTCAATTGT+TGG + chr7_3:52451777-52451796 Msa1109090:intron 40.0%
GTCAAGTACGCTCAATTGTT+GGG + chr7_3:52451778-52451797 Msa1109090:intron 40.0%
CAGGCAAAACTGAATCACAT+CGG - chr7_3:52451912-52451931 None:intergenic 40.0%
CTAGAGTCAATGACTTTGGA+CGG - chr7_3:52452398-52452417 None:intergenic 40.0%
!!! GCATTTTTAGCATGGCTGTA+GGG - chr7_3:52452609-52452628 None:intergenic 40.0%
AAACATGTGACTACGCAAAG+AGG - chr7_3:52453313-52453332 None:intergenic 40.0%
AAAAATTGACCATTTGCCCC+AGG + chr7_3:52453355-52453374 Msa1109090:intron 40.0%
!! GACACTCTACTTTTCTTGCT+TGG + chr7_3:52453576-52453595 Msa1109090:intron 40.0%
! CATGGACCAATTTCTTTTGC+CGG - chr7_3:52450262-52450281 None:intergenic 40.0%
GGTGATATCTCAGACCAATT+AGG - chr7_3:52454094-52454113 None:intergenic 40.0%
AGTATTTCACACACATGCTG+TGG + chr7_3:52450924-52450943 Msa1109090:CDS 40.0%
! AATTCAAGGGGTGCATTCTA+TGG + chr7_3:52451021-52451040 Msa1109090:CDS 40.0%
!! GTGGCAGCAATGTTTGTTAT+TGG + chr7_3:52451078-52451097 Msa1109090:CDS 40.0%
AACAAGGAGAATGATTGTGG+TGG - chr7_3:52451118-52451137 None:intergenic 40.0%
! TTTTTCTCCATCACCCCAAA+GGG - chr7_3:52451223-52451242 None:intergenic 40.0%
! ATTTTTCTCCATCACCCCAA+AGG - chr7_3:52451224-52451243 None:intergenic 40.0%
TCGTTGAATACTGGTAACAC+TGG + chr7_3:52451264-52451283 Msa1109090:CDS 40.0%
! GGAGTGTCACCTTATGTTAA+TGG + chr7_3:52451285-52451304 Msa1109090:intron 40.0%
CCTCTTGCACCATTAACATA+AGG - chr7_3:52451297-52451316 None:intergenic 40.0%
CCTTATGTTAATGGTGCAAG+AGG + chr7_3:52451294-52451313 Msa1109090:intron 40.0%
GGAAGATGTTCTTGGTATGC+TGG - chr7_3:52446366-52446385 None:intergenic 45.0%
ATCTTCCAACATCACCAGCA+TGG + chr7_3:52446379-52446398 Msa1109090:CDS 45.0%
! TTTAGCCATGCTGGTGATGT+TGG - chr7_3:52446387-52446406 None:intergenic 45.0%
TCACCAGCATGGCTAAACAA+AGG + chr7_3:52446390-52446409 Msa1109090:CDS 45.0%
! TCTCCTTTGTTTAGCCATGC+TGG - chr7_3:52446396-52446415 None:intergenic 45.0%
ATGACAGCAGCAACACTAGT+TGG + chr7_3:52446429-52446448 Msa1109090:CDS 45.0%
GGCAGTGAATTCAGCTTTCA+TGG + chr7_3:52446509-52446528 Msa1109090:CDS 45.0%
! GTAAAGGTGCACCAGCTTTA+GGG + chr7_3:52446619-52446638 Msa1109090:CDS 45.0%
!! TTGTTGGCTGGTTCTGTTCT+TGG + chr7_3:52446792-52446811 Msa1109090:CDS 45.0%
! GGATGGCTTTTGTTCCTCTT+TGG + chr7_3:52446835-52446854 Msa1109090:CDS 45.0%
! CTGGTTTCACTGCTGCTTAT+TGG + chr7_3:52446973-52446992 Msa1109090:CDS 45.0%
! GGAAGGGAAGGTGCATTTAA+GGG - chr7_3:52447431-52447450 None:intergenic 45.0%
! AGGAAGGGAAGGTGCATTTA+AGG - chr7_3:52447432-52447451 None:intergenic 45.0%
!!! TTGCCATTGGTGGTTGGTTT+TGG + chr7_3:52447597-52447616 Msa1109090:intron 45.0%
ATGCCAAAACCAACCACCAA+TGG - chr7_3:52447603-52447622 None:intergenic 45.0%
! ATTATGTGCAGGTTGGACCA+AGG + chr7_3:52447984-52448003 Msa1109090:intron 45.0%
! AATGTGTTGCTGATGCTTGC+AGG + chr7_3:52448040-52448059 Msa1109090:CDS 45.0%
!! TTGCAGGTGCTGGATTGTTA+TGG + chr7_3:52448056-52448075 Msa1109090:CDS 45.0%
!! AGGTGCTGGATTGTTATGGA+TGG + chr7_3:52448060-52448079 Msa1109090:CDS 45.0%
! GGTGCTGGATTGTTATGGAT+GGG + chr7_3:52448061-52448080 Msa1109090:CDS 45.0%
CTGGATTGTTATGGATGGGT+TGG + chr7_3:52448065-52448084 Msa1109090:CDS 45.0%
!! TTGTTATGGATGGGTTGGTC+AGG + chr7_3:52448070-52448089 Msa1109090:CDS 45.0%
!! TGTTATGGATGGGTTGGTCA+GGG + chr7_3:52448071-52448090 Msa1109090:CDS 45.0%
!! CAGCAACTAGTCTTCTTGTG+TGG + chr7_3:52448164-52448183 Msa1109090:CDS 45.0%
TTTGGGAAGCCTTCTGTGAT+TGG + chr7_3:52448208-52448227 Msa1109090:CDS 45.0%
TGAACAGCTCCAATCACAGA+AGG - chr7_3:52448220-52448239 None:intergenic 45.0%
TTCTGTGATTGGAGCTGTTC+AGG + chr7_3:52448219-52448238 Msa1109090:CDS 45.0%
TCTGTGATTGGAGCTGTTCA+GGG + chr7_3:52448220-52448239 Msa1109090:CDS 45.0%
AACCCACGTTAAGTGCATGT+TGG + chr7_3:52448627-52448646 Msa1109090:intron 45.0%
TTGAACCTGAAACCTTGAGG+AGG - chr7_3:52448973-52448992 None:intergenic 45.0%
ATGGTGTGTCTGCATCATGT+AGG + chr7_3:52449216-52449235 Msa1109090:intron 45.0%
TGGTGTGTCTGCATCATGTA+GGG + chr7_3:52449217-52449236 Msa1109090:intron 45.0%
!! TTCTATCTGGGAGCATTCCT+TGG + chr7_3:52449274-52449293 Msa1109090:CDS 45.0%
GAAAAATAGACGAATGCCCC+AGG + chr7_3:52449799-52449818 Msa1109090:intron 45.0%
CCATCATGCCACTATCACAA+TGG - chr7_3:52450514-52450533 None:intergenic 45.0%
!! CCATTGTGATAGTGGCATGA+TGG + chr7_3:52450511-52450530 Msa1109090:intron 45.0%
TTCAACGAACCATGCCTAGT+TGG - chr7_3:52451252-52451271 None:intergenic 45.0%
AGGCATGGTTCGTTGAATAC+TGG + chr7_3:52451255-52451274 Msa1109090:CDS 45.0%
! GGTTGTGTATGGAAGGTGTA+AGG + chr7_3:52451354-52451373 Msa1109090:intron 45.0%
! GTCTTCACTCGTACGCTTTT+CGG + chr7_3:52451715-52451734 Msa1109090:intron 45.0%
! TCTTCACTCGTACGCTTTTC+GGG + chr7_3:52451716-52451735 Msa1109090:intron 45.0%
! CGATGTGATTCAGTTTTGCC+TGG + chr7_3:52451910-52451929 Msa1109090:intron 45.0%
ATGTAACGCTTCTGCTTGGT+AGG - chr7_3:52451990-52452009 None:intergenic 45.0%
!! CGATATTTTTATGTCGGGGG+AGG + chr7_3:52452271-52452290 Msa1109090:intron 45.0%
!! TATTTTTATGTCGGGGGAGG+AGG + chr7_3:52452274-52452293 Msa1109090:intron 45.0%
GAACTTCCCAAAGACTAGCA+AGG + chr7_3:52452360-52452379 Msa1109090:intron 45.0%
!!! GGCATTTTTAGCATGGCTGT+AGG - chr7_3:52452610-52452629 None:intergenic 45.0%
TGCGCAAGTTAACTAACGCA+GGG - chr7_3:52452632-52452651 None:intergenic 45.0%
TTGCGCAAGTTAACTAACGC+AGG - chr7_3:52452633-52452652 None:intergenic 45.0%
AGCGCAAGTTAAGTGACGTA+AGG + chr7_3:52452683-52452702 Msa1109090:intron 45.0%
TATTGGAAACCTGGGGCAAA+TGG - chr7_3:52453367-52453386 None:intergenic 45.0%
!!! TCTGCCTGCCATTTTGATAG+TGG + chr7_3:52454028-52454047 Msa1109090:intron 45.0%
CATGCCACTATCAAAATGGC+AGG - chr7_3:52454035-52454054 None:intergenic 45.0%
TTCAACGAACCATGCCTAGT+TGG - chr7_3:52451252-52451271 None:intergenic 45.0%
AGGCATGGTTCGTTGAATAC+TGG + chr7_3:52451255-52451274 Msa1109090:CDS 45.0%
!! ATATTATATTAATTATAAGA+AGG - chr7_3:52449940-52449959 None:intergenic 5.0%
!!! TATTTTCATTTTTTTTTTTA+AGG - chr7_3:52450027-52450046 None:intergenic 5.0%
!! AATATAAATAAAATAATGTT+TGG + chr7_3:52452317-52452336 Msa1109090:intron 5.0%
!! ATATAAATAAAATAATGTTT+GGG + chr7_3:52452318-52452337 Msa1109090:intron 5.0%
!!! TAAGAAAATTATTTAATTTT+TGG + chr7_3:52452462-52452481 Msa1109090:intron 5.0%
!! TTAAATACAAATATAAATAA+AGG + chr7_3:52452925-52452944 Msa1109090:intron 5.0%
!! ATATTATATTAATTATAAGA+AGG - chr7_3:52449940-52449959 None:intergenic 5.0%
! GTTGGTCTACAAAGCATGCC+AGG + chr7_3:52446447-52446466 Msa1109090:CDS 50.0%
! GGTAAAGGTGCACCAGCTTT+AGG + chr7_3:52446618-52446637 Msa1109090:CDS 50.0%
!! TGGCTGGTTCTGTTCTTGGA+AGG + chr7_3:52446796-52446815 Msa1109090:CDS 50.0%
!! GGTGCTTTTAGTCTTTGGGG+TGG + chr7_3:52446879-52446898 Msa1109090:CDS 50.0%
!!! GCTTTTAGTCTTTGGGGTGG+TGG + chr7_3:52446882-52446901 Msa1109090:CDS 50.0%
ATGCACCTTCCCTTCCTTCA+TGG + chr7_3:52447435-52447454 Msa1109090:intron 50.0%
TTGCTCCATGAAGGAAGGGA+AGG - chr7_3:52447443-52447462 None:intergenic 50.0%
! CGATTGAGATTTTGCCGCAG+AGG + chr7_3:52447884-52447903 Msa1109090:intron 50.0%
ATACGGAGTTGGATCCTCTG+CGG - chr7_3:52447901-52447920 None:intergenic 50.0%
!! ATGGGTTGGTCAGGGTTCAA+TGG + chr7_3:52448079-52448098 Msa1109090:CDS 50.0%
GCTGTTCAGGGTATGATGAC+TGG + chr7_3:52448232-52448251 Msa1109090:CDS 50.0%
GGACTTGTATGTATCACCCC+AGG + chr7_3:52448253-52448272 Msa1109090:CDS 50.0%
TTGAGGAGGAACACACTCTC+AGG - chr7_3:52448959-52448978 None:intergenic 50.0%
! TGAGAGTGTGTTCCTCCTCA+AGG + chr7_3:52448958-52448977 Msa1109090:intron 50.0%
GTGTTCCTCCTCAAGGTTTC+AGG + chr7_3:52448965-52448984 Msa1109090:intron 50.0%
ATGTAGGGCTTGTGCAATCG+TGG + chr7_3:52449232-52449251 Msa1109090:intron 50.0%
TGTAGGGCTTGTGCAATCGT+GGG + chr7_3:52449233-52449252 Msa1109090:intron 50.0%
GGTGAAGGTTCCTCTTTGCT+AGG + chr7_3:52449746-52449765 Msa1109090:intron 50.0%
TTTCACACACATGCTGTGGC+TGG + chr7_3:52450928-52450947 Msa1109090:CDS 50.0%
CTGTTAGTAGGCCACCCAAT+AGG - chr7_3:52450954-52450973 None:intergenic 50.0%
CTATTGGGTGGCCTACTAAC+AGG + chr7_3:52450952-52450971 Msa1109090:CDS 50.0%
CTGCAAGGAGTCCTGTTAGT+AGG - chr7_3:52450966-52450985 None:intergenic 50.0%
GCACCCCTTGAATTTGTCAC+TGG - chr7_3:52451015-52451034 None:intergenic 50.0%
! TCAAGGGGTGCATTCTATGG+TGG + chr7_3:52451024-52451043 Msa1109090:CDS 50.0%
! GGTGCATTCTATGGTGGAAG+TGG + chr7_3:52451030-52451049 Msa1109090:CDS 50.0%
! GCATTCTATGGTGGAAGTGG+TGG + chr7_3:52451033-52451052 Msa1109090:CDS 50.0%
CATGCAGTCTCATACCTGCA+CGG + chr7_3:52451867-52451886 Msa1109090:intron 50.0%
GAGAGATCTTGAAACCGTGC+AGG - chr7_3:52451884-52451903 None:intergenic 50.0%
! AGTTTTGCCTGGAAGTTGCC+AGG + chr7_3:52451921-52451940 Msa1109090:intron 50.0%
GGGACGAACTATGCGGAAAT+TGG - chr7_3:52452018-52452037 None:intergenic 50.0%
AAATCTCTCCCGGTACGATG+TGG - chr7_3:52452045-52452064 None:intergenic 50.0%
! CAACCGTGAAGCACCTATTG+CGG - chr7_3:52452517-52452536 None:intergenic 50.0%
GGGTGCGAGCAAAATGTGTT+GGG - chr7_3:52452589-52452608 None:intergenic 50.0%
AGGGTGCGAGCAAAATGTGT+TGG - chr7_3:52452590-52452609 None:intergenic 50.0%
!!! ACGCAGGGGCATTTTTAGCA+TGG - chr7_3:52452617-52452636 None:intergenic 50.0%
GCGCAAGTTAACTAACGCAG+GGG - chr7_3:52452631-52452650 None:intergenic 50.0%
TTTCACACACATGCTGTGGC+TGG + chr7_3:52450928-52450947 Msa1109090:CDS 50.0%
CTGTTAGTAGGCCACCCAAT+AGG - chr7_3:52450954-52450973 None:intergenic 50.0%
CTATTGGGTGGCCTACTAAC+AGG + chr7_3:52450952-52450971 Msa1109090:CDS 50.0%
CTGCAAGGAGTCCTGTTAGT+AGG - chr7_3:52450966-52450985 None:intergenic 50.0%
GCACCCCTTGAATTTGTCAC+TGG - chr7_3:52451015-52451034 None:intergenic 50.0%
! TCAAGGGGTGCATTCTATGG+TGG + chr7_3:52451024-52451043 Msa1109090:CDS 50.0%
! GGTGCATTCTATGGTGGAAG+TGG + chr7_3:52451030-52451049 Msa1109090:CDS 50.0%
! GCATTCTATGGTGGAAGTGG+TGG + chr7_3:52451033-52451052 Msa1109090:CDS 50.0%
GGAGGAAGCTTATGCCCTTT+GGG + chr7_3:52454762-52454781 Msa1109090:CDS 50.0%
GAGGAAGCTTATGCCCTTTG+GGG + chr7_3:52454763-52454782 Msa1109090:CDS 50.0%
GGTGCACCTTTACCCCAGAA+AGG - chr7_3:52446612-52446631 None:intergenic 55.0%
TTGCTGATGCTTGCAGGTGC+TGG + chr7_3:52448046-52448065 Msa1109090:CDS 55.0%
! GGTTGGTCAGGGTTCAATGG+TGG + chr7_3:52448082-52448101 Msa1109090:CDS 55.0%
GTATGTATCACCCCAGGAGC+AGG + chr7_3:52448259-52448278 Msa1109090:CDS 55.0%
ATCGTGGGCGGCTATTGTGA+TGG + chr7_3:52449248-52449267 Msa1109090:CDS 55.0%
TCGTGGGCGGCTATTGTGAT+GGG + chr7_3:52449249-52449268 Msa1109090:CDS 55.0%
!! ACATGCTGTGGCTGGCCTAT+TGG + chr7_3:52450936-52450955 Msa1109090:CDS 55.0%
!! CATGCTGTGGCTGGCCTATT+GGG + chr7_3:52450937-52450956 Msa1109090:CDS 55.0%
!! TACATAGGGCTGGCTCTGCA+AGG - chr7_3:52450981-52451000 None:intergenic 55.0%
CGAGGAGGCTTATGCCCTTT+GGG + chr7_3:52451206-52451225 Msa1109090:CDS 55.0%
GAGGAGGCTTATGCCCTTTG+GGG + chr7_3:52451207-52451226 Msa1109090:CDS 55.0%
!! GCTTATGCCCTTTGGGGTGA+TGG + chr7_3:52451213-52451232 Msa1109090:CDS 55.0%
GTAACGCTCGAGGCTGATGA+GGG - chr7_3:52451964-52451983 None:intergenic 55.0%
TGTAACGCTCGAGGCTGATG+AGG - chr7_3:52451965-52451984 None:intergenic 55.0%
TGGTAGGCATGTAACGCTCG+AGG - chr7_3:52451974-52451993 None:intergenic 55.0%
GCGCATGTAACGCTTCTGCT+TGG - chr7_3:52451994-52452013 None:intergenic 55.0%
! TGGTTCGGGGACGAACTATG+CGG - chr7_3:52452025-52452044 None:intergenic 55.0%
TCTCCCGGTACGATGTGGTT+CGG - chr7_3:52452040-52452059 None:intergenic 55.0%
GGACCGCAATAGGTGCTTCA+CGG + chr7_3:52452511-52452530 Msa1109090:intron 55.0%
!! ACATGCTGTGGCTGGCCTAT+TGG + chr7_3:52450936-52450955 Msa1109090:CDS 55.0%
!! CATGCTGTGGCTGGCCTATT+GGG + chr7_3:52450937-52450956 Msa1109090:CDS 55.0%
!! TACATAGGGCTGGCTCTGCA+AGG - chr7_3:52450981-52451000 None:intergenic 55.0%
TGCTCGTCAGGCATCCTCAA+GGG - chr7_3:52454712-52454731 None:intergenic 55.0%
CCTGACGAGCAGCTCGAAAT+CGG + chr7_3:52454721-52454740 Msa1109090:CDS 55.0%
CTGACGAGCAGCTCGAAATC+GGG + chr7_3:52454722-52454741 Msa1109090:CDS 55.0%
TGACGAGCAGCTCGAAATCG+GGG + chr7_3:52454723-52454742 Msa1109090:CDS 55.0%
GGGAGGAAGCTTATGCCCTT+TGG + chr7_3:52454761-52454780 Msa1109090:CDS 55.0%
!! GCTTATGCCCTTTGGGGTGA+TGG + chr7_3:52451213-52451232 Msa1109090:CDS 55.0%
! TGGTGATGCTGCTGCTGCCA+TGG - chr7_3:52446346-52446365 None:intergenic 60.0%
AGGGCTTGTGCAATCGTGGG+CGG + chr7_3:52449236-52449255 Msa1109090:intron 60.0%
TGCTCGTCGGGCATCCTCAA+GGG - chr7_3:52451156-52451175 None:intergenic 60.0%
CCGATTTCGAGCTGCTCGTC+GGG - chr7_3:52451168-52451187 None:intergenic 60.0%
CCCGACGAGCAGCTCGAAAT+CGG + chr7_3:52451165-52451184 Msa1109090:CDS 60.0%
CCCGATTTCGAGCTGCTCGT+CGG - chr7_3:52451169-52451188 None:intergenic 60.0%
CCGACGAGCAGCTCGAAATC+GGG + chr7_3:52451166-52451185 Msa1109090:CDS 60.0%
CGACGAGCAGCTCGAAATCG+GGG + chr7_3:52451167-52451186 Msa1109090:CDS 60.0%
GCTCGAAATCGGGGACGATG+CGG + chr7_3:52451176-52451195 Msa1109090:CDS 60.0%
GCGAGGAGGCTTATGCCCTT+TGG + chr7_3:52451205-52451224 Msa1109090:CDS 60.0%
! GATGAGGGCATGGAGTGGTC+CGG - chr7_3:52451949-52451968 None:intergenic 60.0%
! AGGCTGATGAGGGCATGGAG+TGG - chr7_3:52451954-52451973 None:intergenic 60.0%
GTCCCCGAACCACATCGTAC+CGG + chr7_3:52452033-52452052 Msa1109090:intron 60.0%
TCCCCGAACCACATCGTACC+GGG + chr7_3:52452034-52452053 Msa1109090:intron 60.0%
TCCCGGTACGATGTGGTTCG+GGG - chr7_3:52452038-52452057 None:intergenic 60.0%
CTCCCGGTACGATGTGGTTC+GGG - chr7_3:52452039-52452058 None:intergenic 60.0%
CTGCTCGTCAGGCATCCTCA+AGG - chr7_3:52454713-52454732 None:intergenic 60.0%
CCGATTTCGAGCTGCTCGTC+AGG - chr7_3:52451168-52451187 None:intergenic 60.0%
GCTCGAAATCGGGGACGATG+CGG + chr7_3:52451176-52451195 Msa1109090:CDS 60.0%
!! GCTGTGGCTGGCCTATTGGG+TGG + chr7_3:52450940-52450959 Msa1109090:CDS 65.0%
CTGCTCGTCGGGCATCCTCA+AGG - chr7_3:52451157-52451176 None:intergenic 65.0%
GGCATAAGCCTCCTCGCCGT+GGG - chr7_3:52451202-52451221 None:intergenic 65.0%
GCCTGGAAGTTGCCAGGAGC+CGG + chr7_3:52451927-52451946 Msa1109090:intron 65.0%
TCCGGCTCCTGGCAACTTCC+AGG - chr7_3:52451931-52451950 None:intergenic 65.0%
GCTCGAGGCTGATGAGGGCA+TGG - chr7_3:52451959-52451978 None:intergenic 65.0%
!! GCTGTGGCTGGCCTATTGGG+TGG + chr7_3:52450940-52450959 Msa1109090:CDS 65.0%
ATCGGGGACGATGCGGCTCA+CGG + chr7_3:52454739-52454758 Msa1109090:CDS 65.0%
ATCGGGGACGATGCGGCCCA+CGG + chr7_3:52451183-52451202 Msa1109090:CDS 70.0%
GGGCATAAGCCTCCTCGCCG+TGG - chr7_3:52451203-52451222 None:intergenic 70.0%
GCATGGAGTGGTCCGGCTCC+TGG - chr7_3:52451942-52451961 None:intergenic 70.0%
TCGGGGACGATGCGGCTCAC+GGG + chr7_3:52454740-52454759 Msa1109090:CDS 70.0%
CGGGGACGATGCGGCTCACG+GGG + chr7_3:52454741-52454760 Msa1109090:CDS 75.0%
GGACGATGCGGCTCACGGGG+AGG + chr7_3:52454744-52454763 Msa1109090:CDS 75.0%
! GGACGATGCGGCCCACGGCG+AGG + chr7_3:52451188-52451207 Msa1109090:CDS 80.0%
! CGATGCGGCCCACGGCGAGG+AGG + chr7_3:52451191-52451210 Msa1109090:CDS 80.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 52446102 52454891 52446102 ID=Msa1109090;Name=Msa1109090
chr7_3 mRNA 52446102 52454891 52446102 ID=Msa1109090-mRNA-1;Parent=Msa1109090;Name=Msa1109090-mRNA-1;_AED=0.13;_eAED=0.13;_QI=243|0.75|0.6|1|1|1|5|0|620
chr7_3 exon 52446102 52446995 52446102 ID=Msa1109090-mRNA-1:exon:11014;Parent=Msa1109090-mRNA-1
chr7_3 exon 52447995 52448280 52447995 ID=Msa1109090-mRNA-1:exon:11015;Parent=Msa1109090-mRNA-1
chr7_3 exon 52449238 52449341 52449238 ID=Msa1109090-mRNA-1:exon:11016;Parent=Msa1109090-mRNA-1
chr7_3 exon 52450907 52451299 52450907 ID=Msa1109090-mRNA-1:exon:11017;Parent=Msa1109090-mRNA-1
chr7_3 exon 52454463 52454891 52454463 ID=Msa1109090-mRNA-1:exon:11018;Parent=Msa1109090-mRNA-1
chr7_3 five_prime_UTR 52446102 52446344 52446102 ID=Msa1109090-mRNA-1:five_prime_utr;Parent=Msa1109090-mRNA-1
chr7_3 CDS 52446345 52446995 52446345 ID=Msa1109090-mRNA-1:cds;Parent=Msa1109090-mRNA-1
chr7_3 CDS 52447995 52448280 52447995 ID=Msa1109090-mRNA-1:cds;Parent=Msa1109090-mRNA-1
chr7_3 CDS 52449238 52449341 52449238 ID=Msa1109090-mRNA-1:cds;Parent=Msa1109090-mRNA-1
chr7_3 CDS 52450907 52451299 52450907 ID=Msa1109090-mRNA-1:cds;Parent=Msa1109090-mRNA-1
chr7_3 CDS 52454463 52454891 52454463 ID=Msa1109090-mRNA-1:cds;Parent=Msa1109090-mRNA-1
Gene Sequence

>Msa1109090

ATGGCAGCAGCAGCATCACCAGCATACCAAGAACATCTTCCAACATCACCAGCATGGCTAAACAAAGGAGACAACGCATGGCAAATGACAGCAGCAACACTAGTTGGTCTACAAAGCATGCCAGGACTAGTAATTCTCTATGCAAGCATAGTGAAAAAGAAATGGGCAGTGAATTCAGCTTTCATGGCACTATATGCTTTTGCAGCAGTTTTAATCTGTTGGGTTCTTGTTGCTTATAGAATGGCTTTTGGTGATCAACTTTTACCTTTCTGGGGTAAAGGTGCACCAGCTTTAGGGCAAAAATTTCTTGTTGCTAGAGCGAAAGTACCTGCAAGTACTCACTATTACAAGAATGGTGTTGATATTGAAACACCTATGGAAGAACCTTTTTTTCCTATGGCTTCACTTGTTTATTTTCAGTTTACTTTTGCTGCTATTACTATGATTTTGTTGGCTGGTTCTGTTCTTGGAAGGATGAATATTAAAGCTTGGATGGCTTTTGTTCCTCTTTGGCTTATTTTTTCTTATACTGTTGGTGCTTTTAGTCTTTGGGGTGGTGGATTTCTTTATCATTGGGGTGTTATTGATTATTCTGGTGGCTATGTTATTCATCTTTCTTCTGGAATTGCTGGTTTCACTGCTGCTTATTGGGTTGGACCAAGGATAAAGAGTGATAGGGAAAGGTTTCCACCAAACAATGTGTTGCTGATGCTTGCAGGTGCTGGATTGTTATGGATGGGTTGGTCAGGGTTCAATGGTGGAGCACCATATGCAGCAAATGTTGCATCTTCAATTGCTGTATTGAACACAAACATTTGTGCAGCAACTAGTCTTCTTGTGTGGACCTCTCTTGATGTTGTTTTCTTTGGGAAGCCTTCTGTGATTGGAGCTGTTCAGGGTATGATGACTGGACTTGTATGTATCACCCCAGGAGCAGGGCTTGTGCAATCGTGGGCGGCTATTGTGATGGGAATTCTATCTGGGAGCATTCCTTGGTTCTCCATGATGATCTTGCATAAAAAGTCAAGTCTTCTACAAAAGGTTGATGACACTCTTGGAGTATTTCACACACATGCTGTGGCTGGCCTATTGGGTGGCCTACTAACAGGACTCCTTGCAGAGCCAGCCCTATGTAGATTACTATTACCAGTGACAAATTCAAGGGGTGCATTCTATGGTGGAAGTGGTGGTGTCCAATTCCTAAAACAATTAGTGGCAGCAATGTTTGTTATTGGATGGAACATAGTCTCCACCACAATCATTCTCCTTGTTATACAACTATTCATACCCTTGAGGATGCCCGACGAGCAGCTCGAAATCGGGGACGATGCGGCCCACGGCGAGGAGGCTTATGCCCTTTGGGGTGATGGAGAAAAATATGATCCAACTAGGCATGGTTCGTTGAATACTGGTAACACTGGAGTGTCACCTTATGTTGATGACACTCATGGAGTATTTCACACACATGCTGTGGCTGGCCTATTGGGTGGCCTACTAACAGGACTCCTTGCAGAGCCAGCCCTATGTAGATTACTATTACCAGTGACAAATTCAAGGGGTGCATTCTATGGTGGAAGTGGTGGTGTCCAATTCCTAAAACAATTAGTGGCAGCAATGTTTGTTATTGGATGGAACATAGTCTCCACCACAATCATTCTCCTTGTTATACAACTATTCATACCCTTGAGGATGCCTGACGAGCAGCTCGAAATCGGGGACGATGCGGCTCACGGGGAGGAAGCTTATGCCCTTTGGGGTGATGGAGAAAAATATGATCCAACTAGGCATGGTTCGTTGAATACTGGTAACACTGGAGTGTCACCTTATGTTAATGGTGCAAGAGGTGTGACTATAAATTTATGA
Protein sequence

>Msa1109090

MAAAASPAYQEHLPTSPAWLNKGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVAYRMAFGDQLLPFWGKGAPALGQKFLVARAKVPASTHYYKNGVDIETPMEEPFFPMASLVYFQFTFAAITMILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANVASSIAVLNTNICAATSLLVWTSLDVVFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWFSMMILHKKSSLLQKVDDTLGVFHTHAVAGLLGGLLTGLLAEPALCRLLLPVTNSRGAFYGGSGGVQFLKQLVAAMFVIGWNIVSTTIILLVIQLFIPLRMPDEQLEIGDDAAHGEEAYALWGDGEKYDPTRHGSLNTGNTGVSPYVDDTHGVFHTHAVAGLLGGLLTGLLAEPALCRLLLPVTNSRGAFYGGSGGVQFLKQLVAAMFVIGWNIVSTTIILLVIQLFIPLRMPDEQLEIGDDAAHGEEAYALWGDGEKYDPTRHGSLNTGNTGVSPYVNGARGVTINL*