AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1025080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1025080 MtrunA17_Chr7g0243071 98.560 486 7 0 4 489 2 487 0.0 966
Msa1025080 MtrunA17_Chr8g0385081 75.431 464 108 2 17 475 22 484 0.0 667
Msa1025080 MtrunA17_Chr1g0163571 61.523 486 158 5 14 489 14 480 0.0 573
Msa1025080 MtrunA17_Chr4g0007621 87.296 307 38 1 8 314 6 311 0.0 538
Msa1025080 MtrunA17_Chr7g0274111 54.622 476 183 7 16 477 13 469 1.70e-180 514
Msa1025080 MtrunA17_Chr8g0371171 56.410 273 106 4 218 483 37 303 4.22e-103 311
Msa1025080 MtrunA17_Chr8g0371161 64.091 220 53 4 6 218 5 205 1.79e-79 246
Msa1025080 MtrunA17_Chr4g0007611 80.822 146 27 1 345 489 7 152 3.90e-68 215
Msa1025080 MtrunA17_Chr1g0168631 25.478 471 288 12 24 464 48 485 3.76e-22 99.4
Msa1025080 MtrunA17_Chr1g0189971 25.662 491 294 13 24 477 47 503 3.57e-19 90.5
Msa1025080 MtrunA17_Chr7g0272721 26.216 370 230 11 131 464 123 485 2.58e-16 81.3
Msa1025080 MtrunA17_Chr3g0104661 25.532 470 257 16 42 467 31 451 7.24e-16 79.7
Msa1025080 MtrunA17_Chr7g0262361 24.211 380 229 9 131 466 123 487 5.08e-15 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1025080 AT2G38290.1 75.413 484 105 3 8 489 4 475 0.0 719
Msa1025080 AT2G38290.2 77.994 359 77 2 133 489 1 359 0.0 552
Msa1025080 AT3G24300.1 25.364 481 283 13 24 467 46 487 3.29e-22 100
Msa1025080 AT3G24290.1 26.940 464 264 15 24 451 46 470 1.21e-21 98.2
Msa1025080 AT1G64780.1 26.362 459 278 13 24 452 52 480 1.52e-21 98.2
Msa1025080 AT4G13510.1 25.210 476 284 13 24 464 42 480 8.13e-21 95.9
Msa1025080 AT4G28700.1 25.971 489 290 16 24 475 51 504 3.41e-18 87.8

Find 136 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGTGATTGGAGCTGTTC+AGG 0.196275 7_1:+55275860 Msa1025080:CDS
TATGTTATTCATCTTTCTTC+TGG 0.220707 7_1:+55274604 Msa1025080:CDS
GGATACTTGGTCTGAATATT+TGG 0.224868 7_1:-55273830 None:intergenic
CAGAAAATTTCTTGTAGAAT+TGG 0.227927 7_1:+55279350 Msa1025080:three_prime_UTR
TGATGTATCTATGAAGTTAT+AGG 0.231643 7_1:+55279297 Msa1025080:three_prime_UTR
CTGGTTTCACTGCTGCTTAT+TGG 0.234954 7_1:+55274632 Msa1025080:CDS
TTGTTGGCTGGTTCTGTTCT+TGG 0.237579 7_1:+55274451 Msa1025080:CDS
TGGGGTGTTATTGATTATTC+TGG 0.250620 7_1:+55274577 Msa1025080:CDS
ACATGCTGTGGCTGGCCTAT+TGG 0.253905 7_1:+55278727 Msa1025080:CDS
CATGCTGTGGCTGGCCTATT+GGG 0.258730 7_1:+55278728 Msa1025080:CDS
TGAGTCACACTCACAATTAT+AGG 0.265054 7_1:+55279124 Msa1025080:exon
CGAGGAGGCTTATGCCCTTT+GGG 0.265996 7_1:+55278997 Msa1025080:CDS
GTGGTGGATTTCTTTATCAT+TGG 0.270317 7_1:+55274557 Msa1025080:CDS
CATCTTTCTTCTGGAATTGC+TGG 0.270523 7_1:+55274613 Msa1025080:CDS
GGTAAAGGTGCACCAGCTTT+AGG 0.272696 7_1:+55274277 Msa1025080:CDS
TTTGGGAAGCCTTCTGTGAT+TGG 0.274978 7_1:+55275849 Msa1025080:CDS
TGGTTTCACTGCTGCTTATT+GGG 0.280966 7_1:+55274633 Msa1025080:CDS
GTGGCAGCAATGTTTGTTAT+TGG 0.287336 7_1:+55278869 Msa1025080:CDS
TTGTTATGGATGGGTTGGTC+AGG 0.288183 7_1:+55275711 Msa1025080:CDS
TGGTGGATTTCTTTATCATT+GGG 0.295425 7_1:+55274558 Msa1025080:CDS
TTGCTGATGCTTGCAGGTGC+TGG 0.322741 7_1:+55275687 Msa1025080:CDS
GCGAGGAGGCTTATGCCCTT+TGG 0.327798 7_1:+55278996 Msa1025080:CDS
GGCAGTGAATTCAGCTTTCA+TGG 0.342800 7_1:+55274168 Msa1025080:CDS
GTTGCTTATAGAATGGCTTT+TGG 0.349898 7_1:+55274232 Msa1025080:CDS
TCCCTATCACTCTTTATCCT+TGG 0.350780 7_1:-55275642 None:intergenic
AATTCAAGGGGTGCATTCTA+TGG 0.355468 7_1:+55278812 Msa1025080:CDS
GGTTCTTGTTGCTTATAGAA+TGG 0.366948 7_1:+55274225 Msa1025080:CDS
GTAAAGGTGCACCAGCTTTA+GGG 0.372536 7_1:+55274278 Msa1025080:CDS
CCCGACGAGCAGCTCGAAAT+CGG 0.373882 7_1:+55278956 Msa1025080:CDS
AGCATCAGCAACACATTGTT+TGG 0.375545 7_1:-55275675 None:intergenic
TTCTATCTGGGAGCATTCCT+TGG 0.377365 7_1:+55276909 Msa1025080:CDS
GCTTATGCCCTTTGGGGTGA+TGG 0.380121 7_1:+55279004 Msa1025080:CDS
GGAGTGTCACCTTATGTTAA+TGG 0.386336 7_1:+55279076 Msa1025080:CDS
CCAATTCCTAAAACAATTAG+TGG 0.393680 7_1:+55278850 Msa1025080:CDS
TTGTAATAGTGAGTACTTGC+AGG 0.400657 7_1:-55274331 None:intergenic
TGGTGATGCTGCTGCTGCCA+TGG 0.410499 7_1:-55274002 None:intergenic
ATTGTGATGGGAATTCTATC+TGG 0.411310 7_1:+55276896 Msa1025080:CDS
TCTGTGATTGGAGCTGTTCA+GGG 0.412166 7_1:+55275861 Msa1025080:CDS
AATGTGTTGCTGATGCTTGC+AGG 0.420148 7_1:+55275681 Msa1025080:CDS
CTATTGGGTGGCCTACTAAC+AGG 0.422381 7_1:+55278743 Msa1025080:CDS
GACCAAGGATAAAGAGTGAT+AGG 0.433065 7_1:+55275640 Msa1025080:CDS
AGCTACGTGTAAACTGTCAT+TGG 0.433408 7_1:-55273806 None:intergenic
CCGATTTCGAGCTGCTCGTC+GGG 0.435083 7_1:-55278956 None:intergenic
TTGCAGGTGCTGGATTGTTA+TGG 0.443343 7_1:+55275697 Msa1025080:CDS
GTGATGTTGGAAGATGTTCT+TGG 0.444031 7_1:-55274030 None:intergenic
AAAGTCAAGTCTTCTGCAAA+AGG 0.451410 7_1:+55276955 Msa1025080:CDS
GTACAAAATGTCAAAATTCA+AGG 0.453038 7_1:-55279249 None:intergenic
AGGCATGGTTCGTTGAATAC+TGG 0.453886 7_1:+55279046 Msa1025080:CDS
GTGAGTACTTGCAGGTACTT+TGG 0.455661 7_1:-55274323 None:intergenic
TGTTATGGATGGGTTGGTCA+GGG 0.456410 7_1:+55275712 Msa1025080:CDS
CTGGATTGTTATGGATGGGT+TGG 0.463522 7_1:+55275706 Msa1025080:CDS
TTAAAGGTTGATGACACTCT+TGG 0.466912 7_1:+55278692 Msa1025080:intron
TCTCCTTTGTTTAACCATGC+TGG 0.471106 7_1:-55274052 None:intergenic
CTGGTAATAGTAATCTACAT+AGG 0.472192 7_1:-55278784 None:intergenic
GGTTGTGTATGGAAGGTGTA+AGG 0.472422 7_1:+55279145 Msa1025080:three_prime_UTR
AATGAATATTAAAGCTTGGA+TGG 0.473625 7_1:+55274477 Msa1025080:CDS
CTGCTCGTCGGGCATCCTCA+AGG 0.482168 7_1:-55278945 None:intergenic
TCACAATTATAGGTTGTGTA+TGG 0.482910 7_1:+55279134 Msa1025080:three_prime_UTR
GAAGAATGAATATTAAAGCT+TGG 0.482991 7_1:+55274473 Msa1025080:CDS
CTGCAAGGAGTCCTGTTAGT+AGG 0.485260 7_1:-55278754 None:intergenic
CCCGATTTCGAGCTGCTCGT+CGG 0.486146 7_1:-55278957 None:intergenic
TTAACGTGGAGTTGAAAAGT+TGG 0.487278 7_1:-55273851 None:intergenic
GGAAGATGTTCTTGGTATGC+TGG 0.493678 7_1:-55274022 None:intergenic
AGGTGCTGGATTGTTATGGA+TGG 0.496148 7_1:+55275701 Msa1025080:CDS
CTGTTAGTAGGCCACCCAAT+AGG 0.508793 7_1:-55278742 None:intergenic
GAGTTGAAAAGTTGGATACT+TGG 0.509474 7_1:-55273843 None:intergenic
ATGGGTTGGTCAGGGTTCAA+TGG 0.509849 7_1:+55275720 Msa1025080:CDS
GATGCAACATTTGCTGCATA+TGG 0.511907 7_1:-55275750 None:intergenic
GCATAGAGAATTACTAGTCC+TGG 0.516086 7_1:-55274124 None:intergenic
CAGCAATGTTTGTTATTGGA+TGG 0.518720 7_1:+55278873 Msa1025080:CDS
TATTACCAGTGACAAATTCA+AGG 0.518978 7_1:+55278798 Msa1025080:CDS
TTCAACGAACCATGCCTAGT+TGG 0.519712 7_1:-55279040 None:intergenic
ATGTAGGGCTTGTGCAATCG+TGG 0.521283 7_1:+55276867 Msa1025080:intron
TTTCACACACATGCTGTGGC+TGG 0.523309 7_1:+55278719 Msa1025080:CDS
GTTGGTCTACAAAGCATGCC+AGG 0.526287 7_1:+55274106 Msa1025080:CDS
GGTGCATTCTATGGTGGAAG+TGG 0.527159 7_1:+55278821 Msa1025080:CDS
AGTACTCACTATTACAAGAA+TGG 0.528187 7_1:+55274337 Msa1025080:CDS
CCTCTTGCACCATTAACATA+AGG 0.528402 7_1:-55279085 None:intergenic
GGTTGGTCAGGGTTCAATGG+TGG 0.529011 7_1:+55275723 Msa1025080:CDS
GCATTCTATGGTGGAAGTGG+TGG 0.530052 7_1:+55278824 Msa1025080:CDS
TTTAACCATGCTGGTGATGT+TGG 0.533861 7_1:-55274043 None:intergenic
GGCATAAGCCTCCTCGCCGT+GGG 0.533986 7_1:-55278990 None:intergenic
ATCGGGGACGATGCGGCCCA+CGG 0.537452 7_1:+55278974 Msa1025080:CDS
ATGACAGCAGCAACACTAGT+TGG 0.538801 7_1:+55274088 Msa1025080:CDS
GCACCCCTTGAATTTGTCAC+TGG 0.539379 7_1:-55278803 None:intergenic
AATAGTAATCTACATAGGGC+TGG 0.541637 7_1:-55278779 None:intergenic
GCTGTTCAGGGTATGATGAC+TGG 0.543025 7_1:+55275873 Msa1025080:CDS
ATTACCAGTGACAAATTCAA+GGG 0.543496 7_1:+55278799 Msa1025080:CDS
GGTGTTATTGATTATTCTGG+TGG 0.544017 7_1:+55274580 Msa1025080:CDS
GCTACGTGTAAACTGTCATT+GGG 0.546755 7_1:-55273805 None:intergenic
TTGTGATGGGAATTCTATCT+GGG 0.549743 7_1:+55276897 Msa1025080:CDS
TGCATATATATACCTGCTCC+TGG 0.556786 7_1:-55275912 None:intergenic
ATCGTGGGCGGCTATTGTGA+TGG 0.560238 7_1:+55276883 Msa1025080:CDS
GGTGGATTTCTTTATCATTG+GGG 0.564219 7_1:+55274559 Msa1025080:CDS
CGATGCGGCCCACGGCGAGG+AGG 0.564710 7_1:+55278982 Msa1025080:CDS
TGGTAATAGTAATCTACATA+GGG 0.566028 7_1:-55278783 None:intergenic
TCGTGGGCGGCTATTGTGAT+GGG 0.566243 7_1:+55276884 Msa1025080:CDS
GAGGAGGCTTATGCCCTTTG+GGG 0.566272 7_1:+55278998 Msa1025080:CDS
TGCTCGTCGGGCATCCTCAA+GGG 0.567146 7_1:-55278944 None:intergenic
AATTATAGGTTGTGTATGGA+AGG 0.573449 7_1:+55279138 Msa1025080:three_prime_UTR
GGATAAAGAGTGATAGGGAA+AGG 0.577138 7_1:+55275646 Msa1025080:CDS
ATCAGCAACACATTGTTTGG+TGG 0.581081 7_1:-55275672 None:intergenic
TACATAGGGCTGGCTCTGCA+AGG 0.581821 7_1:-55278769 None:intergenic
AAATATGATCCAACTAGGCA+TGG 0.582321 7_1:+55279031 Msa1025080:CDS
CCTTATGTTAATGGTGCAAG+AGG 0.587708 7_1:+55279085 Msa1025080:CDS
ACCAAGGATAAAGAGTGATA+GGG 0.587771 7_1:+55275641 Msa1025080:CDS
GGGCATAAGCCTCCTCGCCG+TGG 0.588211 7_1:-55278991 None:intergenic
GTATGCATCACACCAGGAGC+AGG 0.590930 7_1:+55275900 Msa1025080:CDS
CAGCAACTAGTCTTCTTGTG+TGG 0.591340 7_1:+55275805 Msa1025080:CDS
TGTAGGGCTTGTGCAATCGT+GGG 0.592002 7_1:+55276868 Msa1025080:intron
GGTGCTGGATTGTTATGGAT+GGG 0.594178 7_1:+55275702 Msa1025080:CDS
AAATAAACAAGTGAAGCCAT+AGG 0.597753 7_1:-55274397 None:intergenic
TATAACAAGGAGAATGATTG+TGG 0.603882 7_1:-55278909 None:intergenic
GCTGTGGCTGGCCTATTGGG+TGG 0.604590 7_1:+55278731 Msa1025080:CDS
TCGTTGAATACTGGTAACAC+TGG 0.616643 7_1:+55279055 Msa1025080:CDS
GGTGCACCTTTACCCCAGAA+AGG 0.618916 7_1:-55274268 None:intergenic
TGAACAGCTCCAATCACAGA+AGG 0.622407 7_1:-55275858 None:intergenic
ATCTTCCAACATCACCAGCA+TGG 0.627882 7_1:+55274038 Msa1025080:CDS
TCAAGGGGTGCATTCTATGG+TGG 0.628215 7_1:+55278815 Msa1025080:CDS
GTATGAATAGTTGTATAACA+AGG 0.633966 7_1:-55278922 None:intergenic
AACAAGGAGAATGATTGTGG+TGG 0.634525 7_1:-55278906 None:intergenic
CGACGAGCAGCTCGAAATCG+GGG 0.635852 7_1:+55278958 Msa1025080:CDS
AAAGAAAACAACATCAAGAG+AGG 0.638741 7_1:-55275829 None:intergenic
TGTTGATATTGAAACACCAA+TGG 0.641395 7_1:+55274360 Msa1025080:CDS
GCTCGAAATCGGGGACGATG+CGG 0.642035 7_1:+55278967 Msa1025080:CDS
AGGGCTTGTGCAATCGTGGG+CGG 0.644338 7_1:+55276871 Msa1025080:intron
GGACTTGTATGCATCACACC+AGG 0.644915 7_1:+55275894 Msa1025080:CDS
TACAACTATTCATACCCTTG+AGG 0.649090 7_1:+55278930 Msa1025080:CDS
ATTATGTGCAGGTTGGACCA+AGG 0.658369 7_1:+55275625 Msa1025080:intron
TAAACAAAGGAGACAACGCA+TGG 0.662925 7_1:+55274062 Msa1025080:CDS
TCACCAGCATGGTTAAACAA+AGG 0.678074 7_1:+55274049 Msa1025080:CDS
AAGATCATCATGGAGAACCA+AGG 0.681910 7_1:-55276926 None:intergenic
AGACTTGAACAAAAGAACCA+TGG 0.689781 7_1:+55273985 Msa1025080:exon
TATAATGAAATGAATTAACG+TGG 0.695308 7_1:-55273865 None:intergenic
AGTATTTCACACACATGCTG+TGG 0.697237 7_1:+55278715 Msa1025080:CDS
TTACCAGTGACAAATTCAAG+GGG 0.721655 7_1:+55278800 Msa1025080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATGAACTATATATTAA+TGG + chr7_1:55276640-55276659 Msa1025080:intron 10.0%
!! TTAAAAGAAAATATATGAAA+AGG + chr7_1:55277853-55277872 Msa1025080:intron 10.0%
!!! TATTTTCATTTTTTTTTTGA+AGG - chr7_1:55277920-55277939 None:intergenic 10.0%
!! TTTAAGCAAAATTAGATAAA+GGG - chr7_1:55274713-55274732 None:intergenic 15.0%
!!! TTTTAAGCAAAATTAGATAA+AGG - chr7_1:55274714-55274733 None:intergenic 15.0%
!!! TTTTCTTATTTTCTTATTCA+CGG - chr7_1:55276433-55276452 None:intergenic 15.0%
!! AATAAGAAAATAAGAAAACT+TGG + chr7_1:55276435-55276454 Msa1025080:intron 15.0%
!! TATAGTTCATATTTCAATTA+GGG - chr7_1:55276634-55276653 None:intergenic 15.0%
!! ATATAGTTCATATTTCAATT+AGG - chr7_1:55276635-55276654 None:intergenic 15.0%
!!! AGTATAGCTTAATTATATTT+TGG + chr7_1:55277029-55277048 Msa1025080:intron 15.0%
!!! CTAGATTTTTTTTTTACAAT+CGG - chr7_1:55277149-55277168 None:intergenic 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG - chr7_1:55277373-55277392 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr7_1:55277476-55277495 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr7_1:55277500-55277519 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr7_1:55277499-55277518 Msa1025080:intron 15.0%
!! TTATATTAATTATAAGAAGG+AGG - chr7_1:55277830-55277849 None:intergenic 15.0%
!!! AAGTAAGTTTTTTTTTTTCT+AGG + chr7_1:55278045-55278064 Msa1025080:intron 15.0%
!!! AGTAAGTTTTTTTTTTTCTA+GGG + chr7_1:55278046-55278065 Msa1025080:intron 15.0%
!!! AAATGAACAAAATTTGATTT+TGG - chr7_1:55278209-55278228 None:intergenic 15.0%
!! TATAATGAAATGAATTAACG+TGG - chr7_1:55273868-55273887 None:intergenic 20.0%
!!! TGAATCAGTTTTTGATTTTT+TGG - chr7_1:55273897-55273916 None:intergenic 20.0%
!!! CTTATTTTTTCTTATACTGT+TGG + chr7_1:55274517-55274536 Msa1025080:CDS 20.0%
!! TTAATCTTTCTTTCATCAAA+TGG + chr7_1:55274659-55274678 Msa1025080:intron 20.0%
!! TAATCTTTCTTTCATCAAAT+GGG + chr7_1:55274660-55274679 Msa1025080:intron 20.0%
!!! AATTTTGCTTAAAAACTTAG+AGG + chr7_1:55274720-55274739 Msa1025080:intron 20.0%
!!! ATTTTGCTTAAAAACTTAGA+GGG + chr7_1:55274721-55274740 Msa1025080:intron 20.0%
!! TTTAAGCAAAATTAGATGAA+GGG - chr7_1:55274806-55274825 None:intergenic 20.0%
!!! TTTTAAGCAAAATTAGATGA+AGG - chr7_1:55274807-55274826 None:intergenic 20.0%
!!! TTCATCTAATTTTGCTTAAA+AGG + chr7_1:55274806-55274825 Msa1025080:intron 20.0%
!!! TCATCTAATTTTGCTTAAAA+GGG + chr7_1:55274807-55274826 Msa1025080:intron 20.0%
!!! TGAAAAAATTGAAACTTTTG+TGG - chr7_1:55275108-55275127 None:intergenic 20.0%
!! TTTAAGCAAAATTAGATGAA+TGG - chr7_1:55274806-55274825 None:intergenic 20.0%
!! ATCTATAAATTAATTGCCAT+TGG + chr7_1:55275238-55275257 Msa1025080:intron 20.0%
!! TTTCTATACCAAATATGAAA+AGG - chr7_1:55275589-55275608 None:intergenic 20.0%
!! TCATATTTGGTATAGAAATT+TGG + chr7_1:55275591-55275610 Msa1025080:intron 20.0%
!!! TTTTTTGATTAATTATGTGC+AGG + chr7_1:55275614-55275633 Msa1025080:intron 20.0%
!! TAGCTTCTTCAAAAAAAAAA+GGG - chr7_1:55276486-55276505 None:intergenic 20.0%
!! TTAGCTTCTTCAAAAAAAAA+AGG - chr7_1:55276487-55276506 None:intergenic 20.0%
!! TATCATAATGATTCAATTAG+TGG + chr7_1:55276794-55276813 Msa1025080:intron 20.0%
!!! ATATCTAGTAATTCTTTTGA+AGG + chr7_1:55277059-55277078 Msa1025080:intron 20.0%
!! TTATAAAAATATACCACCTT+AGG - chr7_1:55277287-55277306 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr7_1:55277413-55277432 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr7_1:55277490-55277509 Msa1025080:intron 20.0%
!! AATGATTAAGAGAAAAAGAA+TGG - chr7_1:55277533-55277552 None:intergenic 20.0%
!! ATTGCATTTCTTAATATATG+TGG + chr7_1:55277550-55277569 Msa1025080:intron 20.0%
!!! CAATTTTTCAACATTAAACA+AGG - chr7_1:55277681-55277700 None:intergenic 20.0%
!! TGTTTAAAAAAGAATGAAAG+TGG - chr7_1:55277765-55277784 None:intergenic 20.0%
!!! CTTTCATTCTTTTTTAAACA+AGG + chr7_1:55277765-55277784 Msa1025080:intron 20.0%
!!! TCATTTGTGTTTAATCATTT+TGG + chr7_1:55278429-55278448 Msa1025080:intron 20.0%
!! ATCAGATATAACAAGTTTAA+AGG + chr7_1:55278502-55278521 Msa1025080:intron 20.0%
!!! AAAAAAAGCACAACAAATTA+AGG - chr7_1:55278663-55278682 None:intergenic 20.0%
! AAGCATAGTGAAAAAGAAAT+GGG + chr7_1:55274147-55274166 Msa1025080:CDS 25.0%
!! TGCTATTACTATGATTTTGT+TGG + chr7_1:55274435-55274454 Msa1025080:CDS 25.0%
! GAAGAATGAATATTAAAGCT+TGG + chr7_1:55274473-55274492 Msa1025080:CDS 25.0%
! AATGAATATTAAAGCTTGGA+TGG + chr7_1:55274477-55274496 Msa1025080:CDS 25.0%
! TAAGAAAAAATAAGCCAAAG+AGG - chr7_1:55274511-55274530 None:intergenic 25.0%
! TATGTTATTCATCTTTCTTC+TGG + chr7_1:55274604-55274623 Msa1025080:CDS 25.0%
! CAAATGAATGTATGATGAAA+GGG - chr7_1:55274753-55274772 None:intergenic 25.0%
!! AATTTTGCTTAAAAGCTTAG+AGG + chr7_1:55275141-55275160 Msa1025080:intron 25.0%
!! ATTTTGCTTAAAAGCTTAGA+GGG + chr7_1:55275142-55275161 Msa1025080:intron 25.0%
! TATAAATTAATTGCCATTGG+TGG + chr7_1:55275241-55275260 Msa1025080:intron 25.0%
! CACAATGTAATTGCAATTAT+AGG - chr7_1:55275313-55275332 None:intergenic 25.0%
! TATGAGAAAATATACAGAGT+TGG - chr7_1:55275566-55275585 None:intergenic 25.0%
!! TTCTCATACCTTTTCATATT+TGG + chr7_1:55275578-55275597 Msa1025080:intron 25.0%
! TAAATTGTATTCAGTCTTGA+GGG + chr7_1:55276093-55276112 Msa1025080:intron 25.0%
! TAGTCAATTTATCGAAATCA+CGG + chr7_1:55276328-55276347 Msa1025080:intron 25.0%
! AAGATCAAAAGAGGTAAATT+GGG - chr7_1:55276591-55276610 None:intergenic 25.0%
! TAAGATCAAAAGAGGTAAAT+TGG - chr7_1:55276592-55276611 None:intergenic 25.0%
! TTATGACTTAAGATCAAAAG+AGG - chr7_1:55276600-55276619 None:intergenic 25.0%
! TCAAAAACATTCACTGAAAT+TGG + chr7_1:55276692-55276711 Msa1025080:intron 25.0%
! TGAACATTTATTGCTGAAAT+TGG + chr7_1:55276727-55276746 Msa1025080:intron 25.0%
! GAACATTTATTGCTGAAATT+GGG + chr7_1:55276728-55276747 Msa1025080:intron 25.0%
!! ATACTAACAAAAAGTACAGT+AGG + chr7_1:55276768-55276787 Msa1025080:intron 25.0%
! TTGTTGACAATTAATGTGAA+TGG + chr7_1:55276832-55276851 Msa1025080:intron 25.0%
!!! TAGTAATTCTTTTGAAGGAT+AGG + chr7_1:55277064-55277083 Msa1025080:intron 25.0%
!!! AGTAATTCTTTTGAAGGATA+GGG + chr7_1:55277065-55277084 Msa1025080:intron 25.0%
!! TTGGAATTTGGAATCAATAT+TGG - chr7_1:55277721-55277740 None:intergenic 25.0%
! AAAAGAAAGTTGTTGGAATT+TGG - chr7_1:55277733-55277752 None:intergenic 25.0%
! CATAAGAAAAAGAAAGTTGT+TGG - chr7_1:55277740-55277759 None:intergenic 25.0%
!! CAACAACTTTCTTTTTCTTA+TGG + chr7_1:55277738-55277757 Msa1025080:intron 25.0%
!!! ATTTCTTTTGCTGGTTTTAT+AGG - chr7_1:55278148-55278167 None:intergenic 25.0%
! ATAAAACCAGCAAAAGAAAT+TGG + chr7_1:55278148-55278167 Msa1025080:intron 25.0%
! GAATTCAAGAAATGTTAGAA+AGG - chr7_1:55278269-55278288 None:intergenic 25.0%
!!! TAGTTTGAAATTTTGTGTGA+TGG - chr7_1:55278375-55278394 None:intergenic 25.0%
! TGGTAATAGTAATCTACATA+GGG - chr7_1:55278786-55278805 None:intergenic 25.0%
! GTATGAATAGTTGTATAACA+AGG - chr7_1:55278925-55278944 None:intergenic 25.0%
! GTACAAAATGTCAAAATTCA+AGG - chr7_1:55279252-55279271 None:intergenic 25.0%
! TGATGTATCTATGAAGTTAT+AGG + chr7_1:55279297-55279316 Msa1025080:three_prime_UTR 25.0%
! CAGAAAATTTCTTGTAGAAT+TGG + chr7_1:55279350-55279369 Msa1025080:three_prime_UTR 25.0%
CAAGCATAGTGAAAAAGAAA+TGG + chr7_1:55274146-55274165 Msa1025080:CDS 30.0%
! TGATCAACTTTTACCTTTCT+GGG + chr7_1:55274255-55274274 Msa1025080:CDS 30.0%
AGTACTCACTATTACAAGAA+TGG + chr7_1:55274337-55274356 Msa1025080:CDS 30.0%
TGTTGATATTGAAACACCAA+TGG + chr7_1:55274360-55274379 Msa1025080:CDS 30.0%
AAATAAACAAGTGAAGCCAT+AGG - chr7_1:55274400-55274419 None:intergenic 30.0%
! ATTACTATGATTTTGTTGGC+TGG + chr7_1:55274439-55274458 Msa1025080:CDS 30.0%
!! TGGTGGATTTCTTTATCATT+GGG + chr7_1:55274558-55274577 Msa1025080:CDS 30.0%
CCAAATGAATGTATGATGAA+AGG - chr7_1:55274754-55274773 None:intergenic 30.0%
CCTTTCATCATACATTCATT+TGG + chr7_1:55274751-55274770 Msa1025080:intron 30.0%
! ACTGTTTTCATAACCTATCT+TGG + chr7_1:55274938-55274957 Msa1025080:intron 30.0%
AATTCAACCCCATGAAAAAA+GGG - chr7_1:55275174-55275193 None:intergenic 30.0%
ATTGAAAGAGCTAGAGTAAT+TGG - chr7_1:55275450-55275469 None:intergenic 30.0%
TTCAATCAAATCTCAACCAT+TGG + chr7_1:55275464-55275483 Msa1025080:intron 30.0%
TTGATTAATTATGTGCAGGT+TGG + chr7_1:55275618-55275637 Msa1025080:intron 30.0%
AAAGAAAACAACATCAAGAG+AGG - chr7_1:55275832-55275851 None:intergenic 30.0%
!!! TCTCTTGATGTTGTTTTCTT+TGG + chr7_1:55275831-55275850 Msa1025080:CDS 30.0%
!!! CTCTTGATGTTGTTTTCTTT+GGG + chr7_1:55275832-55275851 Msa1025080:CDS 30.0%
ATGCATCACTTTCTTATTGT+AGG + chr7_1:55275930-55275949 Msa1025080:intron 30.0%
! TAATCATGCTACTCATGTTT+TGG - chr7_1:55276033-55276052 None:intergenic 30.0%
CTAAATTGTATTCAGTCTTG+AGG + chr7_1:55276092-55276111 Msa1025080:intron 30.0%
!!! TGTTGAATGAACTGGTTTTT+TGG + chr7_1:55276121-55276140 Msa1025080:intron 30.0%
TTGCGAAAAGAGTTACTTAT+AGG + chr7_1:55276202-55276221 Msa1025080:intron 30.0%
GAGTTACTTATAGGTGATAA+AGG + chr7_1:55276211-55276230 Msa1025080:intron 30.0%
GTAGATCACTAACTACTAAT+AGG + chr7_1:55276233-55276252 Msa1025080:intron 30.0%
TAAGAGCTTCAATAAAATCG+TGG - chr7_1:55276359-55276378 None:intergenic 30.0%
! ATGTAGCTTTTGCAAAATCA+TGG + chr7_1:55276380-55276399 Msa1025080:intron 30.0%
! CTTTTTATGCAAGATCATCA+TGG - chr7_1:55276939-55276958 None:intergenic 30.0%
TTAAGCTATACTATAGTGAG+TGG - chr7_1:55277021-55277040 None:intergenic 30.0%
!! GTAATTCTTTTGAAGGATAG+GGG + chr7_1:55277066-55277085 Msa1025080:intron 30.0%
TTCTTAATCAATTCCAGTCT+TGG - chr7_1:55277177-55277196 None:intergenic 30.0%
TATACATGAATAGTTGCCTA+AGG + chr7_1:55277268-55277287 Msa1025080:intron 30.0%
TATACATGAATAGTTGCCTA+AGG + chr7_1:55277268-55277287 Msa1025080:intron 30.0%
! TGTGCAGAGTATTAATTGAA+GGG - chr7_1:55277447-55277466 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr7_1:55277581-55277600 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr7_1:55277582-55277601 Msa1025080:intron 30.0%
CAATGTTAAGGATGAAGTTT+GGG + chr7_1:55277618-55277637 Msa1025080:intron 30.0%
AATTATAAGAAGGAGGATGA+AGG - chr7_1:55277823-55277842 None:intergenic 30.0%
!! TGGACTTTTCTGTTTGAAAT+AGG + chr7_1:55277966-55277985 Msa1025080:intron 30.0%
TAACTGCACAACTTAATGAA+TGG - chr7_1:55278483-55278502 None:intergenic 30.0%
TACAAACCTATATAGATGAG+TGG - chr7_1:55278569-55278588 None:intergenic 30.0%
GATAAATGATCGCGAAATAA+CGG - chr7_1:55278619-55278638 None:intergenic 30.0%
GATAAATGATCGCGAAATTA+AGG - chr7_1:55278641-55278660 None:intergenic 30.0%
CTGGTAATAGTAATCTACAT+AGG - chr7_1:55278787-55278806 None:intergenic 30.0%
TATTACCAGTGACAAATTCA+AGG + chr7_1:55278798-55278817 Msa1025080:CDS 30.0%
ATTACCAGTGACAAATTCAA+GGG + chr7_1:55278799-55278818 Msa1025080:CDS 30.0%
!!! CCACTAATTGTTTTAGGAAT+TGG - chr7_1:55278853-55278872 None:intergenic 30.0%
CCAATTCCTAAAACAATTAG+TGG + chr7_1:55278850-55278869 Msa1025080:CDS 30.0%
TATAACAAGGAGAATGATTG+TGG - chr7_1:55278912-55278931 None:intergenic 30.0%
GAGAAAAATATGATCCAACT+AGG + chr7_1:55279026-55279045 Msa1025080:CDS 30.0%
TCACAATTATAGGTTGTGTA+TGG + chr7_1:55279134-55279153 Msa1025080:three_prime_UTR 30.0%
AATTATAGGTTGTGTATGGA+AGG + chr7_1:55279138-55279157 Msa1025080:three_prime_UTR 30.0%
!!! CTCAAGTTTTGAGATCAATT+TGG + chr7_1:55279200-55279219 Msa1025080:three_prime_UTR 30.0%
!!! AGAAATTTTCTGAAGCTTTC+AGG - chr7_1:55279342-55279361 None:intergenic 30.0%
GGATACTTGGTCTGAATATT+TGG - chr7_1:55273833-55273852 None:intergenic 35.0%
GAGTTGAAAAGTTGGATACT+TGG - chr7_1:55273846-55273865 None:intergenic 35.0%
TTAACGTGGAGTTGAAAAGT+TGG - chr7_1:55273854-55273873 None:intergenic 35.0%
AGACTTGAACAAAAGAACCA+TGG + chr7_1:55273985-55274004 Msa1025080:exon 35.0%
!! TTGCAGCAGTTTTAATCTGT+TGG + chr7_1:55274203-55274222 Msa1025080:CDS 35.0%
!! TGCAGCAGTTTTAATCTGTT+GGG + chr7_1:55274204-55274223 Msa1025080:CDS 35.0%
! GGTTCTTGTTGCTTATAGAA+TGG + chr7_1:55274225-55274244 Msa1025080:CDS 35.0%
! GTTGCTTATAGAATGGCTTT+TGG + chr7_1:55274232-55274251 Msa1025080:CDS 35.0%
! GTGATCAACTTTTACCTTTC+TGG + chr7_1:55274254-55274273 Msa1025080:CDS 35.0%
! GATCAACTTTTACCTTTCTG+GGG + chr7_1:55274256-55274275 Msa1025080:CDS 35.0%
! AGAAATTTTTGCCCTAAAGC+TGG - chr7_1:55274292-55274311 None:intergenic 35.0%
TTGTAATAGTGAGTACTTGC+AGG - chr7_1:55274334-55274353 None:intergenic 35.0%
GGAAAAAAAGGTTCTTCCAT+TGG - chr7_1:55274379-55274398 None:intergenic 35.0%
!!! GGAAGAACCTTTTTTTCCTA+TGG + chr7_1:55274381-55274400 Msa1025080:CDS 35.0%
AGTGAAGCCATAGGAAAAAA+AGG - chr7_1:55274391-55274410 None:intergenic 35.0%
!! TGTTGGTGCTTTTAGTCTTT+GGG + chr7_1:55274534-55274553 Msa1025080:CDS 35.0%
!! GTGGTGGATTTCTTTATCAT+TGG + chr7_1:55274557-55274576 Msa1025080:CDS 35.0%
! GGTGGATTTCTTTATCATTG+GGG + chr7_1:55274559-55274578 Msa1025080:CDS 35.0%
!! TGGGGTGTTATTGATTATTC+TGG + chr7_1:55274577-55274596 Msa1025080:CDS 35.0%
!! GGTGTTATTGATTATTCTGG+TGG + chr7_1:55274580-55274599 Msa1025080:CDS 35.0%
TGAATGTATGATGAAAGGGA+GGG - chr7_1:55274749-55274768 None:intergenic 35.0%
ATGAATGTATGATGAAAGGG+AGG - chr7_1:55274750-55274769 None:intergenic 35.0%
TTTCACAAACTCTCCAAGAT+AGG - chr7_1:55274954-55274973 None:intergenic 35.0%
! TTTTCTCAAGAAGTCTCACA+AGG + chr7_1:55275021-55275040 Msa1025080:intron 35.0%
TTTCTCAAGAAGTCTCACAA+GGG + chr7_1:55275022-55275041 Msa1025080:intron 35.0%
!!! GGTACTTACCCTTTTTTCAT+GGG + chr7_1:55275163-55275182 Msa1025080:intron 35.0%
!!! GTACTTACCCTTTTTTCATG+GGG + chr7_1:55275164-55275183 Msa1025080:intron 35.0%
CAATTCAACCCCATGAAAAA+AGG - chr7_1:55275175-55275194 None:intergenic 35.0%
! AATTAATTGCCATTGGTGGT+TGG + chr7_1:55275245-55275264 Msa1025080:intron 35.0%
AGTGTGATTGTGATTGCAAT+TGG + chr7_1:55275375-55275394 Msa1025080:intron 35.0%
AGCTAGAGTAATTGGTTGAT+GGG - chr7_1:55275442-55275461 None:intergenic 35.0%
GAACGGTTGAATTAATCCAA+TGG - chr7_1:55275483-55275502 None:intergenic 35.0%
TAAGAGATCAACACTCTGAA+CGG - chr7_1:55275500-55275519 None:intergenic 35.0%
ACCAAGGATAAAGAGTGATA+GGG + chr7_1:55275641-55275660 Msa1025080:CDS 35.0%
! TGATACTTTTGTTGAGAGTG+AGG + chr7_1:55276179-55276198 Msa1025080:intron 35.0%
AAAAGGGAGATGCAATGTTA+TGG + chr7_1:55276279-55276298 Msa1025080:intron 35.0%
TCAATTTATCGAAATCACGG+TGG + chr7_1:55276331-55276350 Msa1025080:intron 35.0%
TCAAAAGAGGTAAATTGGGT+TGG - chr7_1:55276587-55276606 None:intergenic 35.0%
GTCAACAAAAACTGCAACTA+TGG - chr7_1:55276820-55276839 None:intergenic 35.0%
! ATTGTGATGGGAATTCTATC+TGG + chr7_1:55276896-55276915 Msa1025080:CDS 35.0%
! TTGTGATGGGAATTCTATCT+GGG + chr7_1:55276897-55276916 Msa1025080:CDS 35.0%
AAAGTCAAGTCTTCTGCAAA+AGG + chr7_1:55276955-55276974 Msa1025080:CDS 35.0%
! AAATCTAGTTTGTCCAAGAC+TGG + chr7_1:55277161-55277180 Msa1025080:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr7_1:55277347-55277366 None:intergenic 35.0%
! GTGTGCAGAGTATTAATTGA+AGG - chr7_1:55277448-55277467 None:intergenic 35.0%
! GGGAGTATATTCCAATGTTA+AGG + chr7_1:55277606-55277625 Msa1025080:intron 35.0%
CCAAACTTCATCCTTAACAT+TGG - chr7_1:55277620-55277639 None:intergenic 35.0%
CCAATGTTAAGGATGAAGTT+TGG + chr7_1:55277617-55277636 Msa1025080:intron 35.0%
GAATCAATATTGGAAACCTG+GGG - chr7_1:55277711-55277730 None:intergenic 35.0%
GGAATCAATATTGGAAACCT+GGG - chr7_1:55277712-55277731 None:intergenic 35.0%
TGGAATCAATATTGGAAACC+TGG - chr7_1:55277713-55277732 None:intergenic 35.0%
AAGTCCAAGCAAGAAAAGTA+GGG - chr7_1:55277953-55277972 None:intergenic 35.0%
AAAGTCCAAGCAAGAAAAGT+AGG - chr7_1:55277954-55277973 None:intergenic 35.0%
! CATGAACCAATTTCTTTTGC+TGG - chr7_1:55278157-55278176 None:intergenic 35.0%
! GGTGATATTTGAGACTCATT+AGG - chr7_1:55278354-55278373 None:intergenic 35.0%
TTCGATCCACTCATCTATAT+AGG + chr7_1:55278560-55278579 Msa1025080:intron 35.0%
!! TTAAAGGTTGATGACACTCT+TGG + chr7_1:55278692-55278711 Msa1025080:intron 35.0%
AATAGTAATCTACATAGGGC+TGG - chr7_1:55278782-55278801 None:intergenic 35.0%
TTACCAGTGACAAATTCAAG+GGG + chr7_1:55278800-55278819 Msa1025080:CDS 35.0%
! TTGCTGCCACTAATTGTTTT+AGG - chr7_1:55278859-55278878 None:intergenic 35.0%
!! CAGCAATGTTTGTTATTGGA+TGG + chr7_1:55278873-55278892 Msa1025080:CDS 35.0%
TACAACTATTCATACCCTTG+AGG + chr7_1:55278930-55278949 Msa1025080:CDS 35.0%
AAATATGATCCAACTAGGCA+TGG + chr7_1:55279031-55279050 Msa1025080:CDS 35.0%
TGAGTCACACTCACAATTAT+AGG + chr7_1:55279124-55279143 Msa1025080:exon 35.0%
GCTACGTGTAAACTGTCATT+GGG - chr7_1:55273808-55273827 None:intergenic 40.0%
AGCTACGTGTAAACTGTCAT+TGG - chr7_1:55273809-55273828 None:intergenic 40.0%
GTGATGTTGGAAGATGTTCT+TGG - chr7_1:55274033-55274052 None:intergenic 40.0%
! TTTAACCATGCTGGTGATGT+TGG - chr7_1:55274046-55274065 None:intergenic 40.0%
TCACCAGCATGGTTAAACAA+AGG + chr7_1:55274049-55274068 Msa1025080:CDS 40.0%
! TCTCCTTTGTTTAACCATGC+TGG - chr7_1:55274055-55274074 None:intergenic 40.0%
TAAACAAAGGAGACAACGCA+TGG + chr7_1:55274062-55274081 Msa1025080:CDS 40.0%
GCATAGAGAATTACTAGTCC+TGG - chr7_1:55274127-55274146 None:intergenic 40.0%
!!! CTTTTACCTTTCTGGGGTAA+AGG + chr7_1:55274262-55274281 Msa1025080:CDS 40.0%
!! CTGTTGGTGCTTTTAGTCTT+TGG + chr7_1:55274533-55274552 Msa1025080:CDS 40.0%
!! GTTGGTGCTTTTAGTCTTTG+GGG + chr7_1:55274535-55274554 Msa1025080:CDS 40.0%
!! CATCTTTCTTCTGGAATTGC+TGG + chr7_1:55274613-55274632 Msa1025080:CDS 40.0%
! TGGTTTCACTGCTGCTTATT+GGG + chr7_1:55274633-55274652 Msa1025080:CDS 40.0%
! GAAACTTTTGTGGTCCATGA+AGG - chr7_1:55275098-55275117 None:intergenic 40.0%
!!! GGGTACTTACCCTTTTTTCA+TGG + chr7_1:55275162-55275181 Msa1025080:intron 40.0%
! GCTAGAGTAATTGGTTGATG+GGG - chr7_1:55275441-55275460 None:intergenic 40.0%
GAGCTAGAGTAATTGGTTGA+TGG - chr7_1:55275443-55275462 None:intergenic 40.0%
!! TCAGAGTGTTGATCTCTTAG+CGG + chr7_1:55275501-55275520 Msa1025080:intron 40.0%
GACCAAGGATAAAGAGTGAT+AGG + chr7_1:55275640-55275659 Msa1025080:CDS 40.0%
TCCCTATCACTCTTTATCCT+TGG - chr7_1:55275645-55275664 None:intergenic 40.0%
GGATAAAGAGTGATAGGGAA+AGG + chr7_1:55275646-55275665 Msa1025080:CDS 40.0%
ATCAGCAACACATTGTTTGG+TGG - chr7_1:55275675-55275694 None:intergenic 40.0%
AGCATCAGCAACACATTGTT+TGG - chr7_1:55275678-55275697 None:intergenic 40.0%
! GATGCAACATTTGCTGCATA+TGG - chr7_1:55275753-55275772 None:intergenic 40.0%
TGCATATATATACCTGCTCC+TGG - chr7_1:55275915-55275934 None:intergenic 40.0%
TAATAGGTGAGTGAAGTCAC+CGG + chr7_1:55276249-55276268 Msa1025080:intron 40.0%
AAGTCACCGGAAAGTGAAAA+AGG + chr7_1:55276262-55276281 Msa1025080:intron 40.0%
AGTCACCGGAAAGTGAAAAA+GGG + chr7_1:55276263-55276282 Msa1025080:intron 40.0%
!! CATCTCCCTTTTTCACTTTC+CGG - chr7_1:55276271-55276290 None:intergenic 40.0%
TACCAACATGCACTTAACGT+GGG - chr7_1:55276307-55276326 None:intergenic 40.0%
ATACCAACATGCACTTAACG+TGG - chr7_1:55276308-55276327 None:intergenic 40.0%
CGGTGAGTTTGACAAAATCA+CGG - chr7_1:55276413-55276432 None:intergenic 40.0%
CTAAATCAGCCCACTCAAAT+TGG + chr7_1:55276503-55276522 Msa1025080:intron 40.0%
AAGATCATCATGGAGAACCA+AGG - chr7_1:55276929-55276948 None:intergenic 40.0%
ACATGAATAGTTGCCTAAGG+TGG + chr7_1:55277271-55277290 Msa1025080:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr7_1:55277586-55277605 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr7_1:55277586-55277605 Msa1025080:intron 40.0%
TAAGGATGAAGTTTGGGTGA+AGG + chr7_1:55277624-55277643 Msa1025080:intron 40.0%
AAACATGTGACCTAGCAAAG+AGG - chr7_1:55277652-55277671 None:intergenic 40.0%
!! TACACCCTACTTTTCTTGCT+TGG + chr7_1:55277946-55277965 Msa1025080:intron 40.0%
CTTGTCTACCATTGTGATAG+TGG + chr7_1:55278291-55278310 Msa1025080:intron 40.0%
AGTATTTCACACACATGCTG+TGG + chr7_1:55278715-55278734 Msa1025080:CDS 40.0%
! AATTCAAGGGGTGCATTCTA+TGG + chr7_1:55278812-55278831 Msa1025080:CDS 40.0%
!! GTGGCAGCAATGTTTGTTAT+TGG + chr7_1:55278869-55278888 Msa1025080:CDS 40.0%
AACAAGGAGAATGATTGTGG+TGG - chr7_1:55278909-55278928 None:intergenic 40.0%
! TTTTTCTCCATCACCCCAAA+GGG - chr7_1:55279014-55279033 None:intergenic 40.0%
! ATTTTTCTCCATCACCCCAA+AGG - chr7_1:55279015-55279034 None:intergenic 40.0%
TCGTTGAATACTGGTAACAC+TGG + chr7_1:55279055-55279074 Msa1025080:CDS 40.0%
! GGAGTGTCACCTTATGTTAA+TGG + chr7_1:55279076-55279095 Msa1025080:CDS 40.0%
CCTCTTGCACCATTAACATA+AGG - chr7_1:55279088-55279107 None:intergenic 40.0%
CCTTATGTTAATGGTGCAAG+AGG + chr7_1:55279085-55279104 Msa1025080:CDS 40.0%
GGAAGATGTTCTTGGTATGC+TGG - chr7_1:55274025-55274044 None:intergenic 45.0%
ATCTTCCAACATCACCAGCA+TGG + chr7_1:55274038-55274057 Msa1025080:CDS 45.0%
ATGACAGCAGCAACACTAGT+TGG + chr7_1:55274088-55274107 Msa1025080:CDS 45.0%
GGCAGTGAATTCAGCTTTCA+TGG + chr7_1:55274168-55274187 Msa1025080:CDS 45.0%
! GTAAAGGTGCACCAGCTTTA+GGG + chr7_1:55274278-55274297 Msa1025080:CDS 45.0%
GTGAGTACTTGCAGGTACTT+TGG - chr7_1:55274326-55274345 None:intergenic 45.0%
!! TTGTTGGCTGGTTCTGTTCT+TGG + chr7_1:55274451-55274470 Msa1025080:CDS 45.0%
! GGATGGCTTTTGTTCCTCTT+TGG + chr7_1:55274494-55274513 Msa1025080:CDS 45.0%
! CTGGTTTCACTGCTGCTTAT+TGG + chr7_1:55274632-55274651 Msa1025080:CDS 45.0%
!!! TTGCCATTGGTGGTTGGTTT+TGG + chr7_1:55275251-55275270 Msa1025080:intron 45.0%
ATGCCAAAACCAACCACCAA+TGG - chr7_1:55275257-55275276 None:intergenic 45.0%
ATACAGAGTTGGATCCTCTG+CGG - chr7_1:55275555-55275574 None:intergenic 45.0%
! ATTATGTGCAGGTTGGACCA+AGG + chr7_1:55275625-55275644 Msa1025080:intron 45.0%
! AATGTGTTGCTGATGCTTGC+AGG + chr7_1:55275681-55275700 Msa1025080:CDS 45.0%
!! TTGCAGGTGCTGGATTGTTA+TGG + chr7_1:55275697-55275716 Msa1025080:CDS 45.0%
!! AGGTGCTGGATTGTTATGGA+TGG + chr7_1:55275701-55275720 Msa1025080:CDS 45.0%
! GGTGCTGGATTGTTATGGAT+GGG + chr7_1:55275702-55275721 Msa1025080:CDS 45.0%
CTGGATTGTTATGGATGGGT+TGG + chr7_1:55275706-55275725 Msa1025080:CDS 45.0%
!! TTGTTATGGATGGGTTGGTC+AGG + chr7_1:55275711-55275730 Msa1025080:CDS 45.0%
!! TGTTATGGATGGGTTGGTCA+GGG + chr7_1:55275712-55275731 Msa1025080:CDS 45.0%
!! CAGCAACTAGTCTTCTTGTG+TGG + chr7_1:55275805-55275824 Msa1025080:CDS 45.0%
TTTGGGAAGCCTTCTGTGAT+TGG + chr7_1:55275849-55275868 Msa1025080:CDS 45.0%
TGAACAGCTCCAATCACAGA+AGG - chr7_1:55275861-55275880 None:intergenic 45.0%
TTCTGTGATTGGAGCTGTTC+AGG + chr7_1:55275860-55275879 Msa1025080:CDS 45.0%
TCTGTGATTGGAGCTGTTCA+GGG + chr7_1:55275861-55275880 Msa1025080:CDS 45.0%
! GGGTCTTGTGTTGAATGAAC+TGG + chr7_1:55276113-55276132 Msa1025080:intron 45.0%
AACCCACGTTAAGTGCATGT+TGG + chr7_1:55276302-55276321 Msa1025080:intron 45.0%
!! CTTGGTGGTAGTATTGGCTT+GGG - chr7_1:55276564-55276583 None:intergenic 45.0%
!! AGAGGTAAATTGGGTTGGCT+TGG - chr7_1:55276582-55276601 None:intergenic 45.0%
ATGGTGTGTCTGCATCATGT+AGG + chr7_1:55276851-55276870 Msa1025080:intron 45.0%
TGGTGTGTCTGCATCATGTA+GGG + chr7_1:55276852-55276871 Msa1025080:intron 45.0%
!! TTCTATCTGGGAGCATTCCT+TGG + chr7_1:55276909-55276928 Msa1025080:CDS 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr7_1:55277585-55277604 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr7_1:55277585-55277604 Msa1025080:intron 45.0%
GAAAAATTGACGAATGCCCC+AGG + chr7_1:55277692-55277711 Msa1025080:intron 45.0%
CCATCATGCCACTATCACAA+TGG - chr7_1:55278302-55278321 None:intergenic 45.0%
!! CCATTGTGATAGTGGCATGA+TGG + chr7_1:55278299-55278318 Msa1025080:intron 45.0%
TTCAACGAACCATGCCTAGT+TGG - chr7_1:55279043-55279062 None:intergenic 45.0%
AGGCATGGTTCGTTGAATAC+TGG + chr7_1:55279046-55279065 Msa1025080:CDS 45.0%
! GGTTGTGTATGGAAGGTGTA+AGG + chr7_1:55279145-55279164 Msa1025080:three_prime_UTR 45.0%
!! TTATAACAAAATATAATAAA+AGG + chr7_1:55274890-55274909 Msa1025080:intron 5.0%
!! ATATTATATTAATTATAAGA+AGG - chr7_1:55277833-55277852 None:intergenic 5.0%
!!! TTTTTTTTTTTTTGTATTAA+AGG + chr7_1:55278676-55278695 Msa1025080:intron 5.0%
! GTTGGTCTACAAAGCATGCC+AGG + chr7_1:55274106-55274125 Msa1025080:CDS 50.0%
! GGTAAAGGTGCACCAGCTTT+AGG + chr7_1:55274277-55274296 Msa1025080:CDS 50.0%
!! GGTGCTTTTAGTCTTTGGGG+TGG + chr7_1:55274538-55274557 Msa1025080:CDS 50.0%
!!! GCTTTTAGTCTTTGGGGTGG+TGG + chr7_1:55274541-55274560 Msa1025080:CDS 50.0%
TGGTCCATGAAGGAAGTGAG+GGG - chr7_1:55275088-55275107 None:intergenic 50.0%
GTGGTCCATGAAGGAAGTGA+GGG - chr7_1:55275089-55275108 None:intergenic 50.0%
TGTGGTCCATGAAGGAAGTG+AGG - chr7_1:55275090-55275109 None:intergenic 50.0%
! CGATTGAGATTTTGCCGCAG+AGG + chr7_1:55275538-55275557 Msa1025080:intron 50.0%
!! ATGGGTTGGTCAGGGTTCAA+TGG + chr7_1:55275720-55275739 Msa1025080:CDS 50.0%
GCTGTTCAGGGTATGATGAC+TGG + chr7_1:55275873-55275892 Msa1025080:CDS 50.0%
GGACTTGTATGCATCACACC+AGG + chr7_1:55275894-55275913 Msa1025080:CDS 50.0%
! TCTCCGGTGCCAATTTGAGT+GGG - chr7_1:55276515-55276534 None:intergenic 50.0%
!! GTAGTATTGGCTTGGGACCT+GGG - chr7_1:55276557-55276576 None:intergenic 50.0%
!! GCTTGGTGGTAGTATTGGCT+TGG - chr7_1:55276565-55276584 None:intergenic 50.0%
!! GGTTGGCTTGGTGGTAGTAT+TGG - chr7_1:55276570-55276589 None:intergenic 50.0%
!! GGTAAATTGGGTTGGCTTGG+TGG - chr7_1:55276579-55276598 None:intergenic 50.0%
ATGTAGGGCTTGTGCAATCG+TGG + chr7_1:55276867-55276886 Msa1025080:intron 50.0%
TGTAGGGCTTGTGCAATCGT+GGG + chr7_1:55276868-55276887 Msa1025080:intron 50.0%
!! AACGGAGGGAGTACTACCTT+AGG - chr7_1:55277329-55277348 None:intergenic 50.0%
GGTGAAGGTTCCTCTTTGCT+AGG + chr7_1:55277639-55277658 Msa1025080:intron 50.0%
TTTCACACACATGCTGTGGC+TGG + chr7_1:55278719-55278738 Msa1025080:CDS 50.0%
GCACCCCTTGAATTTGTCAC+TGG - chr7_1:55278806-55278825 None:intergenic 50.0%
! TCAAGGGGTGCATTCTATGG+TGG + chr7_1:55278815-55278834 Msa1025080:CDS 50.0%
! GGTGCATTCTATGGTGGAAG+TGG + chr7_1:55278821-55278840 Msa1025080:CDS 50.0%
! GCATTCTATGGTGGAAGTGG+TGG + chr7_1:55278824-55278843 Msa1025080:CDS 50.0%
GGTGCACCTTTACCCCAGAA+AGG - chr7_1:55274271-55274290 None:intergenic 55.0%
AACGCCCCTCACTTCCTTCA+TGG + chr7_1:55275081-55275100 Msa1025080:intron 55.0%
TTGCTGATGCTTGCAGGTGC+TGG + chr7_1:55275687-55275706 Msa1025080:CDS 55.0%
! GGTTGGTCAGGGTTCAATGG+TGG + chr7_1:55275723-55275742 Msa1025080:CDS 55.0%
GTATGCATCACACCAGGAGC+AGG + chr7_1:55275900-55275919 Msa1025080:CDS 55.0%
CAGCCCACTCAAATTGGCAC+CGG + chr7_1:55276509-55276528 Msa1025080:intron 55.0%
! GTCTCCGGTGCCAATTTGAG+TGG - chr7_1:55276516-55276535 None:intergenic 55.0%
!! GGTAGTATTGGCTTGGGACC+TGG - chr7_1:55276558-55276577 None:intergenic 55.0%
ATCGTGGGCGGCTATTGTGA+TGG + chr7_1:55276883-55276902 Msa1025080:CDS 55.0%
TCGTGGGCGGCTATTGTGAT+GGG + chr7_1:55276884-55276903 Msa1025080:CDS 55.0%
!! ACATGCTGTGGCTGGCCTAT+TGG + chr7_1:55278727-55278746 Msa1025080:CDS 55.0%
!! CATGCTGTGGCTGGCCTATT+GGG + chr7_1:55278728-55278747 Msa1025080:CDS 55.0%
!! TACATAGGGCTGGCTCTGCA+AGG - chr7_1:55278772-55278791 None:intergenic 55.0%
CGAGGAGGCTTATGCCCTTT+GGG + chr7_1:55278997-55279016 Msa1025080:CDS 55.0%
GAGGAGGCTTATGCCCTTTG+GGG + chr7_1:55278998-55279017 Msa1025080:CDS 55.0%
!! GCTTATGCCCTTTGGGGTGA+TGG + chr7_1:55279004-55279023 Msa1025080:CDS 55.0%
! TGGTGATGCTGCTGCTGCCA+TGG - chr7_1:55274005-55274024 None:intergenic 60.0%
! AATTGGCACCGGAGACCTCG+AGG + chr7_1:55276520-55276539 Msa1025080:intron 60.0%
AGGGCTTGTGCAATCGTGGG+CGG + chr7_1:55276871-55276890 Msa1025080:intron 60.0%
TGCTCGTCGGGCATCCTCAA+GGG - chr7_1:55278947-55278966 None:intergenic 60.0%
CCGATTTCGAGCTGCTCGTC+GGG - chr7_1:55278959-55278978 None:intergenic 60.0%
CCCGACGAGCAGCTCGAAAT+CGG + chr7_1:55278956-55278975 Msa1025080:CDS 60.0%
CCCGATTTCGAGCTGCTCGT+CGG - chr7_1:55278960-55278979 None:intergenic 60.0%
CCGACGAGCAGCTCGAAATC+GGG + chr7_1:55278957-55278976 Msa1025080:CDS 60.0%
CGACGAGCAGCTCGAAATCG+GGG + chr7_1:55278958-55278977 Msa1025080:CDS 60.0%
GCTCGAAATCGGGGACGATG+CGG + chr7_1:55278967-55278986 Msa1025080:CDS 60.0%
GCGAGGAGGCTTATGCCCTT+TGG + chr7_1:55278996-55279015 Msa1025080:CDS 60.0%
GTGCTCCTCCTCGAGGTCTC+CGG - chr7_1:55276531-55276550 None:intergenic 65.0%
! TGGGAGTGTGCTCCTCCTCG+AGG - chr7_1:55276538-55276557 None:intergenic 65.0%
! TCGAGGAGGAGCACACTCCC+AGG + chr7_1:55276537-55276556 Msa1025080:intron 65.0%
!! GCTGTGGCTGGCCTATTGGG+TGG + chr7_1:55278731-55278750 Msa1025080:CDS 65.0%
CTGCTCGTCGGGCATCCTCA+AGG - chr7_1:55278948-55278967 None:intergenic 65.0%
GGCATAAGCCTCCTCGCCGT+GGG - chr7_1:55278993-55279012 None:intergenic 65.0%
! TGGCACCGGAGACCTCGAGG+AGG + chr7_1:55276523-55276542 Msa1025080:intron 70.0%
ATCGGGGACGATGCGGCCCA+CGG + chr7_1:55278974-55278993 Msa1025080:CDS 70.0%
GGGCATAAGCCTCCTCGCCG+TGG - chr7_1:55278994-55279013 None:intergenic 70.0%
! GGACGATGCGGCCCACGGCG+AGG + chr7_1:55278979-55278998 Msa1025080:CDS 80.0%
! CGATGCGGCCCACGGCGAGG+AGG + chr7_1:55278982-55279001 Msa1025080:CDS 80.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 55273761 55279379 55273761 ID=Msa1025080;Name=Msa1025080
chr7_1 mRNA 55273761 55279379 55273761 ID=Msa1025080-mRNA-1;Parent=Msa1025080;Name=Msa1025080-mRNA-1;_AED=0.16;_eAED=0.16;_QI=243|1|1|1|1|1|4|253|489
chr7_1 exon 55273761 55274654 55273761 ID=Msa1025080-mRNA-1:exon:11045;Parent=Msa1025080-mRNA-1
chr7_1 exon 55275636 55275921 55275636 ID=Msa1025080-mRNA-1:exon:11046;Parent=Msa1025080-mRNA-1
chr7_1 exon 55276873 55276976 55276873 ID=Msa1025080-mRNA-1:exon:11047;Parent=Msa1025080-mRNA-1
chr7_1 exon 55278698 55279379 55278698 ID=Msa1025080-mRNA-1:exon:11048;Parent=Msa1025080-mRNA-1
chr7_1 five_prime_UTR 55273761 55274003 55273761 ID=Msa1025080-mRNA-1:five_prime_utr;Parent=Msa1025080-mRNA-1
chr7_1 CDS 55274004 55274654 55274004 ID=Msa1025080-mRNA-1:cds;Parent=Msa1025080-mRNA-1
chr7_1 CDS 55275636 55275921 55275636 ID=Msa1025080-mRNA-1:cds;Parent=Msa1025080-mRNA-1
chr7_1 CDS 55276873 55276976 55276873 ID=Msa1025080-mRNA-1:cds;Parent=Msa1025080-mRNA-1
chr7_1 CDS 55278698 55279126 55278698 ID=Msa1025080-mRNA-1:cds;Parent=Msa1025080-mRNA-1
chr7_1 three_prime_UTR 55279127 55279379 55279127 ID=Msa1025080-mRNA-1:three_prime_utr;Parent=Msa1025080-mRNA-1
Gene Sequence

>Msa1025080

ATGGCAGCAGCAGCATCACCAGCATACCAAGAACATCTTCCAACATCACCAGCATGGTTAAACAAAGGAGACAACGCATGGCAAATGACAGCAGCAACACTAGTTGGTCTACAAAGCATGCCAGGACTAGTAATTCTCTATGCAAGCATAGTGAAAAAGAAATGGGCAGTGAATTCAGCTTTCATGGCACTATATGCTTTTGCAGCAGTTTTAATCTGTTGGGTTCTTGTTGCTTATAGAATGGCTTTTGGTGATCAACTTTTACCTTTCTGGGGTAAAGGTGCACCAGCTTTAGGGCAAAAATTTCTTGTTGCTAGAGCCAAAGTACCTGCAAGTACTCACTATTACAAGAATGGTGTTGATATTGAAACACCAATGGAAGAACCTTTTTTTCCTATGGCTTCACTTGTTTATTTTCAGTTTACTTTTGCTGCTATTACTATGATTTTGTTGGCTGGTTCTGTTCTTGGAAGAATGAATATTAAAGCTTGGATGGCTTTTGTTCCTCTTTGGCTTATTTTTTCTTATACTGTTGGTGCTTTTAGTCTTTGGGGTGGTGGATTTCTTTATCATTGGGGTGTTATTGATTATTCTGGTGGCTATGTTATTCATCTTTCTTCTGGAATTGCTGGTTTCACTGCTGCTTATTGGGTTGGACCAAGGATAAAGAGTGATAGGGAAAGGTTTCCACCAAACAATGTGTTGCTGATGCTTGCAGGTGCTGGATTGTTATGGATGGGTTGGTCAGGGTTCAATGGTGGAGCACCATATGCAGCAAATGTTGCATCTTCAATTGCTGTATTGAACACAAACATTTGTGCAGCAACTAGTCTTCTTGTGTGGACCTCTCTTGATGTTGTTTTCTTTGGGAAGCCTTCTGTGATTGGAGCTGTTCAGGGTATGATGACTGGACTTGTATGCATCACACCAGGAGCAGGGCTTGTGCAATCGTGGGCGGCTATTGTGATGGGAATTCTATCTGGGAGCATTCCTTGGTTCTCCATGATGATCTTGCATAAAAAGTCAAGTCTTCTGCAAAAGGTTGATGACACTCTTGGAGTATTTCACACACATGCTGTGGCTGGCCTATTGGGTGGCCTACTAACAGGACTCCTTGCAGAGCCAGCCCTATGTAGATTACTATTACCAGTGACAAATTCAAGGGGTGCATTCTATGGTGGAAGTGGTGGTGTCCAATTCCTAAAACAATTAGTGGCAGCAATGTTTGTTATTGGATGGAACATAGTCTCCACCACAATCATTCTCCTTGTTATACAACTATTCATACCCTTGAGGATGCCCGACGAGCAGCTCGAAATCGGGGACGATGCGGCCCACGGCGAGGAGGCTTATGCCCTTTGGGGTGATGGAGAAAAATATGATCCAACTAGGCATGGTTCGTTGAATACTGGTAACACTGGAGTGTCACCTTATGTTAATGGTGCAAGAGGTGTGACTATAAATTTATGA

Protein sequence

>Msa1025080

MAAAASPAYQEHLPTSPAWLNKGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVAYRMAFGDQLLPFWGKGAPALGQKFLVARAKVPASTHYYKNGVDIETPMEEPFFPMASLVYFQFTFAAITMILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANVASSIAVLNTNICAATSLLVWTSLDVVFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWFSMMILHKKSSLLQKVDDTLGVFHTHAVAGLLGGLLTGLLAEPALCRLLLPVTNSRGAFYGGSGGVQFLKQLVAAMFVIGWNIVSTTIILLVIQLFIPLRMPDEQLEIGDDAAHGEEAYALWGDGEKYDPTRHGSLNTGNTGVSPYVNGARGVTINL*