Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026280 | XP_003623294.3 | 96.241 | 266 | 7 | 3 | 1 | 264 | 1 | 265 | 0.0 | 513 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026280 | sp|Q9M022|AIRP2_ARATH | 73.478 | 230 | 60 | 1 | 21 | 250 | 1 | 229 | 3.49e-125 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026280 | A0A396H3Z6 | 96.241 | 266 | 7 | 3 | 1 | 264 | 1 | 265 | 0.0 | 513 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0785570 | Msa1026280 | 0.804151 | 2.479293e-49 | -8.615850e-47 |
| Msa1026280 | Msa1152240 | 0.823717 | 1.191471e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026280 | MtrunA17_Chr7g0242261 | 96.241 | 266 | 7 | 3 | 1 | 264 | 1 | 265 | 0.0 | 513 |
| Msa1026280 | MtrunA17_Chr4g0006201 | 76.087 | 230 | 54 | 1 | 21 | 250 | 6 | 234 | 8.36e-134 | 377 |
| Msa1026280 | MtrunA17_Chr4g0047521 | 66.087 | 230 | 77 | 1 | 21 | 250 | 7 | 235 | 3.31e-115 | 330 |
| Msa1026280 | MtrunA17_Chr2g0281861 | 66.222 | 225 | 75 | 1 | 25 | 249 | 14 | 237 | 2.00e-110 | 318 |
| Msa1026280 | MtrunA17_Chr3g0104651 | 60.173 | 231 | 90 | 2 | 20 | 249 | 12 | 241 | 3.03e-100 | 293 |
| Msa1026280 | MtrunA17_Chr3g0123161 | 42.194 | 237 | 127 | 3 | 20 | 247 | 8 | 243 | 8.12e-60 | 190 |
| Msa1026280 | MtrunA17_Chr8g0376861 | 43.348 | 233 | 124 | 4 | 22 | 247 | 7 | 238 | 3.44e-59 | 188 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026280 | AT5G01520.1 | 73.478 | 230 | 60 | 1 | 21 | 250 | 1 | 229 | 3.55e-126 | 358 |
| Msa1026280 | AT3G47160.1 | 69.163 | 227 | 69 | 1 | 24 | 250 | 5 | 230 | 7.36e-120 | 342 |
| Msa1026280 | AT3G47160.2 | 65.690 | 239 | 69 | 2 | 24 | 250 | 5 | 242 | 2.42e-116 | 334 |
| Msa1026280 | AT5G58787.1 | 64.255 | 235 | 80 | 2 | 24 | 258 | 5 | 235 | 2.49e-104 | 303 |
| Msa1026280 | AT3G47160.3 | 68.041 | 194 | 61 | 1 | 57 | 250 | 1 | 193 | 3.73e-100 | 291 |
| Msa1026280 | AT5G01520.2 | 74.566 | 173 | 43 | 1 | 21 | 193 | 1 | 172 | 3.95e-94 | 275 |
| Msa1026280 | AT5G58787.2 | 60.426 | 235 | 74 | 3 | 24 | 258 | 5 | 220 | 1.96e-92 | 272 |
| Msa1026280 | AT5G58787.3 | 57.078 | 219 | 75 | 3 | 40 | 258 | 2 | 201 | 3.68e-80 | 240 |
| Msa1026280 | AT1G24440.1 | 43.777 | 233 | 126 | 3 | 19 | 247 | 4 | 235 | 1.70e-63 | 199 |
| Msa1026280 | AT1G13195.1 | 41.667 | 228 | 127 | 3 | 25 | 247 | 16 | 242 | 2.60e-59 | 189 |
| Msa1026280 | AT1G24440.2 | 43.069 | 202 | 110 | 3 | 50 | 247 | 3 | 203 | 9.59e-52 | 168 |
| Msa1026280 | AT1G13195.2 | 40.394 | 203 | 115 | 3 | 50 | 247 | 3 | 204 | 4.76e-50 | 164 |
Find 49 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAAGAAATAGAAGAAAA+AGG | 0.258071 | 7_1:+57969507 | Msa1026280:CDS |
| TGAAATGAGTAATAAATTAA+AGG | 0.281666 | 7_1:-57973010 | None:intergenic |
| TGGTTCTTGGCAGGCATATA+AGG | 0.285615 | 7_1:+57971473 | Msa1026280:intron |
| TAGTACTTTGGTTTGGTACT+AGG | 0.319224 | 7_1:+57969298 | Msa1026280:five_prime_UTR |
| TAATTTATTACTCATTTCAT+TGG | 0.347388 | 7_1:+57973014 | Msa1026280:three_prime_UTR |
| TGTCACCTTGCTGGAGCCTT+AGG | 0.348571 | 7_1:+57970984 | Msa1026280:CDS |
| TGATGATACCATGTGAATAT+AGG | 0.348922 | 7_1:-57972914 | None:intergenic |
| TGGACTGACTGTCACCTTGC+TGG | 0.350741 | 7_1:+57970975 | Msa1026280:CDS |
| CACTTGTGGTTGCCTCTTAG+TGG | 0.356226 | 7_1:+57972935 | Msa1026280:CDS |
| CCTTTGTCGACTAATTCTAT+AGG | 0.373123 | 7_1:-57971860 | None:intergenic |
| GCAAGTTTGAAGGAGTTCTA+TGG | 0.381001 | 7_1:+57971531 | Msa1026280:CDS |
| GCACATTGAATGATTGCAAT+TGG | 0.387477 | 7_1:-57971963 | None:intergenic |
| AATGATTAATTACAGTGTAT+TGG | 0.408248 | 7_1:-57969598 | None:intergenic |
| AAAAGGAAGAAGTGTGCAGC+TGG | 0.412811 | 7_1:-57970942 | None:intergenic |
| ATTGGGCAATACAACTATAC+TGG | 0.421843 | 7_1:-57971945 | None:intergenic |
| GATGATACCATGTGAATATA+GGG | 0.442304 | 7_1:-57972913 | None:intergenic |
| TGAAAGAAAAGCAAGTTTGA+AGG | 0.452336 | 7_1:+57971521 | Msa1026280:CDS |
| TTGAATGAGCTTCCACTAAG+AGG | 0.453265 | 7_1:-57972947 | None:intergenic |
| GATCATGCGAAAGTCTTTCA+AGG | 0.464400 | 7_1:+57969539 | Msa1026280:CDS |
| GAGTAAACTCAGGTGACCTA+TGG | 0.482995 | 7_1:+57972788 | Msa1026280:CDS |
| CGCAAGTAACTCACCAGTCT+CGG | 0.489573 | 7_1:-57971997 | None:intergenic |
| CACATTGAATGATTGCAATT+GGG | 0.497149 | 7_1:-57971962 | None:intergenic |
| TTAAGACAGTCTCGACAGAA+AGG | 0.506892 | 7_1:-57972763 | None:intergenic |
| TGTAGGACAATCTCATTTGA+AGG | 0.523036 | 7_1:-57970917 | None:intergenic |
| TCTGTGAAGTTGCAATAAAG+AGG | 0.525633 | 7_1:-57971780 | None:intergenic |
| TAAGACAGTCTCGACAGAAA+GGG | 0.534064 | 7_1:-57972762 | None:intergenic |
| GCATCAAATGCTACCGAGAC+TGG | 0.539433 | 7_1:+57971984 | Msa1026280:CDS |
| TAGGCACCATCTTGATCACT+TGG | 0.543229 | 7_1:-57970894 | None:intergenic |
| CAGAGGAATCACTGATGTTG+AGG | 0.550758 | 7_1:+57971799 | Msa1026280:CDS |
| TCTTGGCAGGCATATAAGGA+TGG | 0.551831 | 7_1:+57971477 | Msa1026280:intron |
| GAAGTGTGCAGCTGGGCTGT+AGG | 0.575455 | 7_1:-57970934 | None:intergenic |
| CTGTGAAGTTGCAATAAAGA+GGG | 0.575980 | 7_1:-57971779 | None:intergenic |
| GAATCACTGATGTTGAGGAT+AGG | 0.580470 | 7_1:+57971804 | Msa1026280:CDS |
| GGACAATCTCATTTGAAGGT+AGG | 0.590167 | 7_1:-57970913 | None:intergenic |
| AGAGTGTGATATTTGTTGCA+TGG | 0.592145 | 7_1:+57971916 | Msa1026280:CDS |
| CTTGGCAGGCATATAAGGAT+GGG | 0.594999 | 7_1:+57971478 | Msa1026280:intron |
| CCTATAGAATTAGTCGACAA+AGG | 0.597342 | 7_1:+57971860 | Msa1026280:CDS |
| TCACATGGTATCATCACTTG+TGG | 0.599219 | 7_1:+57972921 | Msa1026280:CDS |
| TGCTGCTCATGTACATCCAT+AGG | 0.601320 | 7_1:-57972804 | None:intergenic |
| ACAGTCTCGACAGAAAGGGC+AGG | 0.621628 | 7_1:-57972758 | None:intergenic |
| TGCTAGACCCTATATTCACA+TGG | 0.627686 | 7_1:+57972906 | Msa1026280:CDS |
| GATTATCCAAGTGATCAAGA+TGG | 0.631352 | 7_1:+57970888 | Msa1026280:CDS |
| TGTCTTAAAAGAGTAAACTC+AGG | 0.633716 | 7_1:+57972778 | Msa1026280:CDS |
| AAAGGAAGAAGTGTGCAGCT+GGG | 0.647627 | 7_1:-57970941 | None:intergenic |
| ATATAGGGTCTAGCAACAAG+AGG | 0.657403 | 7_1:-57972898 | None:intergenic |
| TGATCTTGCTTCAATCAACA+AGG | 0.669497 | 7_1:+57972837 | Msa1026280:CDS |
| CTTCCTTCACATGTAAAACG+AGG | 0.670577 | 7_1:+57969341 | Msa1026280:five_prime_UTR |
| GCAATCCTAAGGCTCCAGCA+AGG | 0.682338 | 7_1:-57970989 | None:intergenic |
| TCTTTATTGCAACTTCACAG+AGG | 0.700321 | 7_1:+57971782 | Msa1026280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATAAATGATATTTTATAAT+TGG | + | chr7_1:57969715-57969734 | Msa1026280:intron | 10.0% |
| !! | TATTAAAAACATTTCATAAA+AGG | - | chr7_1:57971371-57971390 | None:intergenic | 10.0% |
| !! | TTCACAAAAAATAAAATAAA+AGG | - | chr7_1:57972027-57972046 | None:intergenic | 10.0% |
| !!! | TTAATTAGTTTAAAAGAAAA+TGG | + | chr7_1:57972508-57972527 | Msa1026280:intron | 10.0% |
| !!! | GTTTATGAATATTGATTTAT+TGG | + | chr7_1:57969645-57969664 | Msa1026280:intron | 15.0% |
| !!! | AAATGATATTTTATAATTGG+TGG | + | chr7_1:57969718-57969737 | Msa1026280:intron | 15.0% |
| !!! | GAAATGTACTTTTTTTTAAT+GGG | + | chr7_1:57970601-57970620 | Msa1026280:intron | 15.0% |
| !!! | AAATGTACTTTTTTTTAATG+GGG | + | chr7_1:57970602-57970621 | Msa1026280:intron | 15.0% |
| !!! | GCTTAAAATTTTTATATACA+AGG | + | chr7_1:57971010-57971029 | Msa1026280:CDS | 15.0% |
| !! | AATAAGCTGAAAAAAATTTA+TGG | - | chr7_1:57971168-57971187 | None:intergenic | 15.0% |
| !! | GAATAACTTTAATGATAATA+AGG | + | chr7_1:57972047-57972066 | Msa1026280:intron | 15.0% |
| !! | TGAAATGAGTAATAAATTAA+AGG | - | chr7_1:57973013-57973032 | None:intergenic | 15.0% |
| !! | TAATTTATTACTCATTTCAT+TGG | + | chr7_1:57973014-57973033 | Msa1026280:three_prime_UTR | 15.0% |
| !!! | TGTTGTTGGTTTAATTAATT+TGG | + | chr7_1:57969401-57969420 | Msa1026280:intron | 20.0% |
| !! | TTGGTCACTATATTTATTTA+TGG | + | chr7_1:57969420-57969439 | Msa1026280:intron | 20.0% |
| !!! | AGTTTTTGAGTTTTATGAAT+GGG | + | chr7_1:57969465-57969484 | Msa1026280:intron | 20.0% |
| !! | AAGAAAGAAATAGAAGAAAA+AGG | + | chr7_1:57969507-57969526 | Msa1026280:CDS | 20.0% |
| !! | AATGATTAATTACAGTGTAT+TGG | - | chr7_1:57969601-57969620 | None:intergenic | 20.0% |
| !!! | GAATATTGATTTATTGGTTT+TGG | + | chr7_1:57969651-57969670 | Msa1026280:intron | 20.0% |
| !!! | TTTACGTTTCTTTTGTATAA+TGG | + | chr7_1:57970369-57970388 | Msa1026280:intron | 20.0% |
| !! | TGTATATTACATCCAATTTA+TGG | + | chr7_1:57970449-57970468 | Msa1026280:intron | 20.0% |
| !! | TTATTAAATACACGCAAAAT+GGG | - | chr7_1:57970579-57970598 | None:intergenic | 20.0% |
| !! | TTTATTAAATACACGCAAAA+TGG | - | chr7_1:57970580-57970599 | None:intergenic | 20.0% |
| !!! | CGAAATGTACTTTTTTTTAA+TGG | + | chr7_1:57970600-57970619 | Msa1026280:intron | 20.0% |
| !! | TACAAATAAAATCGGAAATT+AGG | - | chr7_1:57970723-57970742 | None:intergenic | 20.0% |
| !! | TATCAAGGTACAAATAAAAT+CGG | - | chr7_1:57970731-57970750 | None:intergenic | 20.0% |
| !! | AATTACATCTTGTAATATCA+AGG | - | chr7_1:57970746-57970765 | None:intergenic | 20.0% |
| !!! | AAAAATTTTAAGCAATCCTA+AGG | - | chr7_1:57971003-57971022 | None:intergenic | 20.0% |
| !! | AAACATTTCATAAAAGGAAA+AGG | - | chr7_1:57971365-57971384 | None:intergenic | 20.0% |
| !!! | TACAAGTCTATTTTATTAAC+AGG | + | chr7_1:57971746-57971765 | Msa1026280:intron | 20.0% |
| !! | ATTATCTAAGAATTTGGATT+GGG | - | chr7_1:57972352-57972371 | None:intergenic | 20.0% |
| !! | TATTATCTAAGAATTTGGAT+TGG | - | chr7_1:57972353-57972372 | None:intergenic | 20.0% |
| !! | TCTGATATTATCTAAGAATT+TGG | - | chr7_1:57972358-57972377 | None:intergenic | 20.0% |
| !!! | TTCAAACTAAAAAGATTTTG+AGG | - | chr7_1:57972421-57972440 | None:intergenic | 20.0% |
| !!! | TTTAGAATATTGCATACAAT+TGG | - | chr7_1:57972449-57972468 | None:intergenic | 20.0% |
| !! | ACTAATTAAAAAGATTGTTG+AGG | - | chr7_1:57972497-57972516 | None:intergenic | 20.0% |
| !!! | TGTTCTATTTTCTAGTACTT+TGG | + | chr7_1:57969286-57969305 | Msa1026280:five_prime_UTR | 25.0% |
| !!! | TATTTTCTAGTACTTTGGTT+TGG | + | chr7_1:57969291-57969310 | Msa1026280:five_prime_UTR | 25.0% |
| !!! | GTTTTTTTTGTTGTTGTTGT+TGG | + | chr7_1:57969387-57969406 | Msa1026280:intron | 25.0% |
| !!! | CAGTTTTTGAGTTTTATGAA+TGG | + | chr7_1:57969464-57969483 | Msa1026280:intron | 25.0% |
| ! | AAGCAAGTAATTTCCTAATT+GGG | - | chr7_1:57969683-57969702 | None:intergenic | 25.0% |
| ! | AAAGCAAGTAATTTCCTAAT+TGG | - | chr7_1:57969684-57969703 | None:intergenic | 25.0% |
| !!! | GTCTTGTTTATTTAACTTGT+TGG | + | chr7_1:57969781-57969800 | Msa1026280:intron | 25.0% |
| ! | AAGAAAATTCATTTGTCTCT+TGG | - | chr7_1:57969843-57969862 | None:intergenic | 25.0% |
| !! | ACAAATGAATTTTCTTCATG+AGG | + | chr7_1:57969847-57969866 | Msa1026280:intron | 25.0% |
| !! | TGTATGTTATTTGTGAAAGA+TGG | + | chr7_1:57970116-57970135 | Msa1026280:intron | 25.0% |
| !!! | TCTTTTTGACATGTTTTGAT+GGG | + | chr7_1:57970218-57970237 | Msa1026280:intron | 25.0% |
| ! | ATTGTCCTATTAAGATCAAA+TGG | - | chr7_1:57970490-57970509 | None:intergenic | 25.0% |
| ! | ATATTGTGACATTGAAGAAA+AGG | - | chr7_1:57970777-57970796 | None:intergenic | 25.0% |
| ! | ATTGTCTTAACTAATCTTTG+TGG | + | chr7_1:57970839-57970858 | Msa1026280:intron | 25.0% |
| ! | TAATATACTAAGACCATGTT+TGG | - | chr7_1:57971330-57971349 | None:intergenic | 25.0% |
| !! | TTTTCTTTCATGAATAGACA+TGG | - | chr7_1:57971511-57971530 | None:intergenic | 25.0% |
| !! | AAATTTACCAAATTGACTCT+TGG | - | chr7_1:57971573-57971592 | None:intergenic | 25.0% |
| ! | TAAACGAATCTTGTAATAAC+TGG | + | chr7_1:57971628-57971647 | Msa1026280:intron | 25.0% |
| !!! | CACAATAATATTTTAACTCG+TGG | - | chr7_1:57972140-57972159 | None:intergenic | 25.0% |
| ! | CACGAGTTAAAATATTATTG+TGG | + | chr7_1:57972138-57972157 | Msa1026280:intron | 25.0% |
| ! | GTTTACATGATTCTAAATTG+AGG | + | chr7_1:57972533-57972552 | Msa1026280:intron | 25.0% |
| GGTAAGTAAAATCTCATCAA+AGG | - | chr7_1:57969929-57969948 | None:intergenic | 30.0% | |
| ! | TAATCTGGAGTTTATCTAAG+AGG | - | chr7_1:57969950-57969969 | None:intergenic | 30.0% |
| TGAAAGATGGATCAAATCAA+TGG | + | chr7_1:57970129-57970148 | Msa1026280:intron | 30.0% | |
| ATGGATCAAATCAATGGATA+GGG | + | chr7_1:57970135-57970154 | Msa1026280:intron | 30.0% | |
| !! | CTCTTTTTGACATGTTTTGA+TGG | + | chr7_1:57970217-57970236 | Msa1026280:intron | 30.0% |
| !!! | CTTTTTGACATGTTTTGATG+GGG | + | chr7_1:57970219-57970238 | Msa1026280:intron | 30.0% |
| ATGGAAAAACACCAAAGTAT+TGG | - | chr7_1:57970264-57970283 | None:intergenic | 30.0% | |
| ! | GTTTTTCCATAATGTTGTAG+CGG | + | chr7_1:57970274-57970293 | Msa1026280:intron | 30.0% |
| ! | TTTTTCCATAATGTTGTAGC+GGG | + | chr7_1:57970275-57970294 | Msa1026280:intron | 30.0% |
| ! | AGATGTTCTTCAGTTATTTC+AGG | - | chr7_1:57970348-57970367 | None:intergenic | 30.0% |
| ! | CGTTTCTTTTGTATAATGGT+CGG | + | chr7_1:57970373-57970392 | Msa1026280:intron | 30.0% |
| TACATCCAATTTATGGAAGT+TGG | + | chr7_1:57970456-57970475 | Msa1026280:intron | 30.0% | |
| TCATTCCAACTTCCATAAAT+TGG | - | chr7_1:57970464-57970483 | None:intergenic | 30.0% | |
| AATTTATGGAAGTTGGAATG+AGG | + | chr7_1:57970463-57970482 | Msa1026280:intron | 30.0% | |
| CTAGTTTACGATGAGATAAT+CGG | + | chr7_1:57970649-57970668 | Msa1026280:intron | 30.0% | |
| ! | TTTGGACATGTTTGGAATAT+CGG | + | chr7_1:57971053-57971072 | Msa1026280:intron | 30.0% |
| ! | TTTTCCAACAGTCTCATAAA+TGG | - | chr7_1:57971119-57971138 | None:intergenic | 30.0% |
| CTAAGTTGTTTATCCAAACA+TGG | + | chr7_1:57971314-57971333 | Msa1026280:intron | 30.0% | |
| TGAAAGAAAAGCAAGTTTGA+AGG | + | chr7_1:57971521-57971540 | Msa1026280:CDS | 30.0% | |
| AAGCTATATTCAACTTACAC+AGG | - | chr7_1:57971674-57971693 | None:intergenic | 30.0% | |
| ! | GTAAGTTGAATATAGCTTTC+TGG | + | chr7_1:57971676-57971695 | Msa1026280:intron | 30.0% |
| ! | GTCTATTTTATTAACAGGTG+TGG | + | chr7_1:57971751-57971770 | Msa1026280:intron | 30.0% |
| CACATTGAATGATTGCAATT+GGG | - | chr7_1:57971965-57971984 | None:intergenic | 30.0% | |
| GCTAAACAATTGAATGAAAG+TGG | + | chr7_1:57972069-57972088 | Msa1026280:intron | 30.0% | |
| CCAAAATGTAGATTCATGTT+TGG | - | chr7_1:57972179-57972198 | None:intergenic | 30.0% | |
| ! | CCAAACATGAATCTACATTT+TGG | + | chr7_1:57972176-57972195 | Msa1026280:intron | 30.0% |
| ! | AACATGAATCTACATTTTGG+AGG | + | chr7_1:57972179-57972198 | Msa1026280:intron | 30.0% |
| ! | TTGATCTTTTGTTGCATTGT+CGG | + | chr7_1:57972222-57972241 | Msa1026280:intron | 30.0% |
| !!! | AACTAAAAAGATTTTGAGGC+CGG | - | chr7_1:57972417-57972436 | None:intergenic | 30.0% |
| ATTAAAAAGATTGTTGAGGC+TGG | - | chr7_1:57972493-57972512 | None:intergenic | 30.0% | |
| ATGATTCTAAATTGAGGTTG+CGG | + | chr7_1:57972539-57972558 | Msa1026280:intron | 30.0% | |
| !! | TTTGTTATTGCGGTAAAATG+CGG | + | chr7_1:57972576-57972595 | Msa1026280:intron | 30.0% |
| AAATTGTCGACGCAATATAA+CGG | - | chr7_1:57972649-57972668 | None:intergenic | 30.0% | |
| TTATAACTGCTACGATTTGA+TGG | + | chr7_1:57972681-57972700 | Msa1026280:intron | 30.0% | |
| TGTCTTAAAAGAGTAAACTC+AGG | + | chr7_1:57972778-57972797 | Msa1026280:CDS | 30.0% | |
| GATGATACCATGTGAATATA+GGG | - | chr7_1:57972916-57972935 | None:intergenic | 30.0% | |
| TGATGATACCATGTGAATAT+AGG | - | chr7_1:57972917-57972936 | None:intergenic | 30.0% | |
| !! | TAGTACTTTGGTTTGGTACT+AGG | + | chr7_1:57969298-57969317 | Msa1026280:five_prime_UTR | 35.0% |
| ! | ATACCTCGTTTTACATGTGA+AGG | - | chr7_1:57969347-57969366 | None:intergenic | 35.0% |
| !! | GTTTTGGATACTACCCAATT+AGG | + | chr7_1:57969667-57969686 | Msa1026280:intron | 35.0% |
| TTTCTTCATGAGGAATCAAG+TGG | + | chr7_1:57969857-57969876 | Msa1026280:intron | 35.0% | |
| ! | GAAAAGAGGTCTTGATAATC+TGG | - | chr7_1:57969965-57969984 | None:intergenic | 35.0% |
| AGGGGACTTAATTGTAGAAA+CGG | + | chr7_1:57970041-57970060 | Msa1026280:intron | 35.0% | |
| AGTTGATCAATATCATCCTC+TGG | + | chr7_1:57970073-57970092 | Msa1026280:intron | 35.0% | |
| GATGGATCAAATCAATGGAT+AGG | + | chr7_1:57970134-57970153 | Msa1026280:intron | 35.0% | |
| CAATGGATAGGGAAAAAAAG+AGG | + | chr7_1:57970146-57970165 | Msa1026280:intron | 35.0% | |
| !! | GGGCTCTAGAAAATAAATCA+TGG | - | chr7_1:57970181-57970200 | None:intergenic | 35.0% |
| ACATGTCAAAAAGAGCTTCA+AGG | - | chr7_1:57970212-57970231 | None:intergenic | 35.0% | |
| !!! | ACATGTTTTGATGGGGAAAA+AGG | + | chr7_1:57970226-57970245 | Msa1026280:intron | 35.0% |
| ! | TTTTCCATAATGTTGTAGCG+GGG | + | chr7_1:57970276-57970295 | Msa1026280:intron | 35.0% |
| GAGGACCATTTGATCTTAAT+AGG | + | chr7_1:57970482-57970501 | Msa1026280:intron | 35.0% | |
| TTCTATGACTGCTATGAATC+CGG | + | chr7_1:57970525-57970544 | Msa1026280:intron | 35.0% | |
| ! | TCAGTTTGTGATTTGCAATC+CGG | - | chr7_1:57970547-57970566 | None:intergenic | 35.0% |
| GAGTCATGTTACAAAGAAAG+AGG | + | chr7_1:57970671-57970690 | Msa1026280:intron | 35.0% | |
| AATCGGAAATTAGGAGTGAT+AGG | - | chr7_1:57970714-57970733 | None:intergenic | 35.0% | |
| GATTATCCAAGTGATCAAGA+TGG | + | chr7_1:57970888-57970907 | Msa1026280:CDS | 35.0% | |
| TGTAGGACAATCTCATTTGA+AGG | - | chr7_1:57970920-57970939 | None:intergenic | 35.0% | |
| !!! | TGCACACTTCTTCCTTTTTT+TGG | + | chr7_1:57970947-57970966 | Msa1026280:CDS | 35.0% |
| !!! | TCTTCCTTTTTTTGGTTCAG+TGG | + | chr7_1:57970955-57970974 | Msa1026280:CDS | 35.0% |
| ATGTCCAAAGTAAAGAGGAA+GGG | - | chr7_1:57971042-57971061 | None:intergenic | 35.0% | |
| CAAACATGTCCAAAGTAAAG+AGG | - | chr7_1:57971047-57971066 | None:intergenic | 35.0% | |
| CTCTTTACTTTGGACATGTT+TGG | + | chr7_1:57971045-57971064 | Msa1026280:intron | 35.0% | |
| ATAGCCATTTATGAGACTGT+TGG | + | chr7_1:57971112-57971131 | Msa1026280:intron | 35.0% | |
| CAACATAATAATGTTGGTCG+TGG | - | chr7_1:57971427-57971446 | None:intergenic | 35.0% | |
| GCACGACAACATAATAATGT+TGG | - | chr7_1:57971433-57971452 | None:intergenic | 35.0% | |
| TAGTGAATGATGTGCATGTT+TGG | + | chr7_1:57971453-57971472 | Msa1026280:intron | 35.0% | |
| AGTGTTACCAAGAGTCAATT+TGG | + | chr7_1:57971563-57971582 | Msa1026280:intron | 35.0% | |
| CTGTGAAGTTGCAATAAAGA+GGG | - | chr7_1:57971782-57971801 | None:intergenic | 35.0% | |
| TCTGTGAAGTTGCAATAAAG+AGG | - | chr7_1:57971783-57971802 | None:intergenic | 35.0% | |
| TCTTTATTGCAACTTCACAG+AGG | + | chr7_1:57971782-57971801 | Msa1026280:CDS | 35.0% | |
| ! | CCTTTGTCGACTAATTCTAT+AGG | - | chr7_1:57971863-57971882 | None:intergenic | 35.0% |
| CCTATAGAATTAGTCGACAA+AGG | + | chr7_1:57971860-57971879 | Msa1026280:CDS | 35.0% | |
| ! | AGAGTGTGATATTTGTTGCA+TGG | + | chr7_1:57971916-57971935 | Msa1026280:CDS | 35.0% |
| ATTGGGCAATACAACTATAC+TGG | - | chr7_1:57971948-57971967 | None:intergenic | 35.0% | |
| GCACATTGAATGATTGCAAT+TGG | - | chr7_1:57971966-57971985 | None:intergenic | 35.0% | |
| ! | CAACATTTTACAGCATGAGA+TGG | - | chr7_1:57972205-57972224 | None:intergenic | 35.0% |
| TCCGAAGATGTGTTTATAAG+TGG | + | chr7_1:57972280-57972299 | Msa1026280:intron | 35.0% | |
| CCCACTTATAAACACATCTT+CGG | - | chr7_1:57972284-57972303 | None:intergenic | 35.0% | |
| CCGAAGATGTGTTTATAAGT+GGG | + | chr7_1:57972281-57972300 | Msa1026280:intron | 35.0% | |
| ATATCTCTCACTTTACACGT+CGG | + | chr7_1:57972306-57972325 | Msa1026280:intron | 35.0% | |
| CCTATCCAAGATCTATTAGT+GGG | + | chr7_1:57972379-57972398 | Msa1026280:intron | 35.0% | |
| TGATTCTAAATTGAGGTTGC+GGG | + | chr7_1:57972540-57972559 | Msa1026280:intron | 35.0% | |
| !!! | CGCTGCAAATTTTGTTATTG+CGG | + | chr7_1:57972566-57972585 | Msa1026280:intron | 35.0% |
| !! | ATAACGGATTTAGATGTCTC+TGG | - | chr7_1:57972633-57972652 | None:intergenic | 35.0% |
| GAATTCTCTTTATGTCCTTC+AGG | + | chr7_1:57972719-57972738 | Msa1026280:intron | 35.0% | |
| TGATCTTGCTTCAATCAACA+AGG | + | chr7_1:57972837-57972856 | Msa1026280:CDS | 35.0% | |
| CTTCCTTCACATGTAAAACG+AGG | + | chr7_1:57969341-57969360 | Msa1026280:five_prime_UTR | 40.0% | |
| GATCATGCGAAAGTCTTTCA+AGG | + | chr7_1:57969539-57969558 | Msa1026280:CDS | 40.0% | |
| !! | AACGATTAGAAGTACCGAAG+TGG | + | chr7_1:57969901-57969920 | Msa1026280:intron | 40.0% |
| TCTCATCAAAGGTTCCACTT+CGG | - | chr7_1:57969918-57969937 | None:intergenic | 40.0% | |
| ! | TCTCTCTGATGAGTTGAGAA+GGG | + | chr7_1:57970022-57970041 | Msa1026280:intron | 40.0% |
| GGGGACTTAATTGTAGAAAC+GGG | + | chr7_1:57970042-57970061 | Msa1026280:intron | 40.0% | |
| GGGACTTAATTGTAGAAACG+GGG | + | chr7_1:57970043-57970062 | Msa1026280:intron | 40.0% | |
| AGAGCTTCAAGGAGGTAAAA+GGG | - | chr7_1:57970201-57970220 | None:intergenic | 40.0% | |
| AAGAGCTTCAAGGAGGTAAA+AGG | - | chr7_1:57970202-57970221 | None:intergenic | 40.0% | |
| TGTCAAAAAGAGCTTCAAGG+AGG | - | chr7_1:57970209-57970228 | None:intergenic | 40.0% | |
| GATCAGGCATTCCAATACTT+TGG | + | chr7_1:57970250-57970269 | Msa1026280:intron | 40.0% | |
| TTTCCATAATGTTGTAGCGG+GGG | + | chr7_1:57970277-57970296 | Msa1026280:intron | 40.0% | |
| GTCGAAATTGCCATAAACTG+AGG | - | chr7_1:57970305-57970324 | None:intergenic | 40.0% | |
| ! | CGACTCTTTTCGTTGTAAAG+AGG | + | chr7_1:57970321-57970340 | Msa1026280:intron | 40.0% |
| !! | ATAATGGTCGGTGCTTTTGT+AGG | + | chr7_1:57970385-57970404 | Msa1026280:intron | 40.0% |
| CTCATCGTAAACTAGTACTC+TGG | - | chr7_1:57970644-57970663 | None:intergenic | 40.0% | |
| ACTTGGATAATCAGAAGCTC+TGG | - | chr7_1:57970880-57970899 | None:intergenic | 40.0% | |
| GGACAATCTCATTTGAAGGT+AGG | - | chr7_1:57970916-57970935 | None:intergenic | 40.0% | |
| CAGTCCACTGAACCAAAAAA+AGG | - | chr7_1:57970962-57970981 | None:intergenic | 40.0% | |
| CTTTCCCTTCCTCTTTACTT+TGG | + | chr7_1:57971035-57971054 | Msa1026280:intron | 40.0% | |
| CATGTCCAAAGTAAAGAGGA+AGG | - | chr7_1:57971043-57971062 | None:intergenic | 40.0% | |
| !! | TGATGTGCATGTTTGGTTCT+TGG | + | chr7_1:57971460-57971479 | Msa1026280:intron | 40.0% |
| GCAAGTTTGAAGGAGTTCTA+TGG | + | chr7_1:57971531-57971550 | Msa1026280:CDS | 40.0% | |
| GAATCACTGATGTTGAGGAT+AGG | + | chr7_1:57971804-57971823 | Msa1026280:CDS | 40.0% | |
| TGAATGAAAGTGGAACATGC+AGG | + | chr7_1:57972079-57972098 | Msa1026280:intron | 40.0% | |
| GAATGAAAGTGGAACATGCA+GGG | + | chr7_1:57972080-57972099 | Msa1026280:intron | 40.0% | |
| ! | ATCTTTTGTTGCATTGTCGG+TGG | + | chr7_1:57972225-57972244 | Msa1026280:intron | 40.0% |
| !!! | ACTTTACACGTCGGTTTTGT+AGG | + | chr7_1:57972315-57972334 | Msa1026280:intron | 40.0% |
| !!! | CTTTACACGTCGGTTTTGTA+GGG | + | chr7_1:57972316-57972335 | Msa1026280:intron | 40.0% |
| GCCTATCCAAGATCTATTAG+TGG | + | chr7_1:57972378-57972397 | Msa1026280:intron | 40.0% | |
| CCCACTAATAGATCTTGGAT+AGG | - | chr7_1:57972382-57972401 | None:intergenic | 40.0% | |
| TAAGACAGTCTCGACAGAAA+GGG | - | chr7_1:57972765-57972784 | None:intergenic | 40.0% | |
| TTAAGACAGTCTCGACAGAA+AGG | - | chr7_1:57972766-57972785 | None:intergenic | 40.0% | |
| ATATAGGGTCTAGCAACAAG+AGG | - | chr7_1:57972901-57972920 | None:intergenic | 40.0% | |
| TGCTAGACCCTATATTCACA+TGG | + | chr7_1:57972906-57972925 | Msa1026280:CDS | 40.0% | |
| TCACATGGTATCATCACTTG+TGG | + | chr7_1:57972921-57972940 | Msa1026280:CDS | 40.0% | |
| TTGAATGAGCTTCCACTAAG+AGG | - | chr7_1:57972950-57972969 | None:intergenic | 40.0% | |
| GGAATCAAGTGGTTACCTTC+CGG | + | chr7_1:57969868-57969887 | Msa1026280:intron | 45.0% | |
| CTAATCGTTTCGACCTTCAC+CGG | - | chr7_1:57969890-57969909 | None:intergenic | 45.0% | |
| ! | AAGACCTCTTTTCCCGAGAA+CGG | + | chr7_1:57969972-57969991 | Msa1026280:intron | 45.0% |
| ! | GTCTCTCTGATGAGTTGAGA+AGG | + | chr7_1:57970021-57970040 | Msa1026280:intron | 45.0% |
| ! | CTCTCTGATGAGTTGAGAAG+GGG | + | chr7_1:57970023-57970042 | Msa1026280:intron | 45.0% |
| TGATGGGGAAAAAGGAGATC+AGG | + | chr7_1:57970234-57970253 | Msa1026280:intron | 45.0% | |
| TAGGCACCATCTTGATCACT+TGG | - | chr7_1:57970897-57970916 | None:intergenic | 45.0% | |
| ! | AAAGGAAGAAGTGTGCAGCT+GGG | - | chr7_1:57970944-57970963 | None:intergenic | 45.0% |
| ! | AAAAGGAAGAAGTGTGCAGC+TGG | - | chr7_1:57970945-57970964 | None:intergenic | 45.0% |
| TGGTTCTTGGCAGGCATATA+AGG | + | chr7_1:57971473-57971492 | Msa1026280:intron | 45.0% | |
| TCTTGGCAGGCATATAAGGA+TGG | + | chr7_1:57971477-57971496 | Msa1026280:intron | 45.0% | |
| CTTGGCAGGCATATAAGGAT+GGG | + | chr7_1:57971478-57971497 | Msa1026280:intron | 45.0% | |
| CAGAGGAATCACTGATGTTG+AGG | + | chr7_1:57971799-57971818 | Msa1026280:CDS | 45.0% | |
| !! | TCGGTTTTGTAGGGTTGAGT+TGG | + | chr7_1:57972325-57972344 | Msa1026280:intron | 45.0% |
| AACTGACGTCGCAGTTACAT+TGG | + | chr7_1:57972467-57972486 | Msa1026280:intron | 45.0% | |
| TTCAGATCTTGCATGCCTGA+AGG | - | chr7_1:57972737-57972756 | None:intergenic | 45.0% | |
| GAGTAAACTCAGGTGACCTA+TGG | + | chr7_1:57972788-57972807 | Msa1026280:CDS | 45.0% | |
| TGCTGCTCATGTACATCCAT+AGG | - | chr7_1:57972807-57972826 | None:intergenic | 45.0% | |
| AAGTGGTTACCTTCCGGTGA+AGG | + | chr7_1:57969874-57969893 | Msa1026280:intron | 50.0% | |
| ! | AGACCTCTTTTCCCGAGAAC+GGG | + | chr7_1:57969973-57969992 | Msa1026280:intron | 50.0% |
| TGTCTTTACCCTCCCGTTCT+CGG | - | chr7_1:57969988-57970007 | None:intergenic | 50.0% | |
| ! | AGCTGCTTTGCTTCAACCAG+AGG | - | chr7_1:57970092-57970111 | None:intergenic | 50.0% |
| TCTGGTTGAAGCAAAGCAGC+TGG | + | chr7_1:57970091-57970110 | Msa1026280:intron | 50.0% | |
| CTGGTTGAAGCAAAGCAGCT+GGG | + | chr7_1:57970092-57970111 | Msa1026280:intron | 50.0% | |
| TGGTTGAAGCAAAGCAGCTG+GGG | + | chr7_1:57970093-57970112 | Msa1026280:intron | 50.0% | |
| !! | GTGCATGTTTGGTTCTTGGC+AGG | + | chr7_1:57971464-57971483 | Msa1026280:intron | 50.0% |
| GCATCAAATGCTACCGAGAC+TGG | + | chr7_1:57971984-57972003 | Msa1026280:CDS | 50.0% | |
| CGCAAGTAACTCACCAGTCT+CGG | - | chr7_1:57972000-57972019 | None:intergenic | 50.0% | |
| GGGAGCCCACTAATAGATCT+TGG | - | chr7_1:57972387-57972406 | None:intergenic | 50.0% | |
| GTAAAATGCGGCCGCAATTG+TGG | + | chr7_1:57972588-57972607 | Msa1026280:intron | 50.0% | |
| CACTTGTGGTTGCCTCTTAG+TGG | + | chr7_1:57972935-57972954 | Msa1026280:CDS | 50.0% | |
| TCGTTTCGACCTTCACCGGA+AGG | - | chr7_1:57969886-57969905 | None:intergenic | 55.0% | |
| ! | CTCTTTTCCCGAGAACGGGA+GGG | + | chr7_1:57969977-57969996 | Msa1026280:intron | 55.0% |
| GTCTTTACCCTCCCGTTCTC+GGG | - | chr7_1:57969987-57970006 | None:intergenic | 55.0% | |
| GTGCCCCCGCTACAACATTA+TGG | - | chr7_1:57970283-57970302 | None:intergenic | 55.0% | |
| TGGACTGACTGTCACCTTGC+TGG | + | chr7_1:57970975-57970994 | Msa1026280:CDS | 55.0% | |
| TGTCACCTTGCTGGAGCCTT+AGG | + | chr7_1:57970984-57971003 | Msa1026280:CDS | 55.0% | |
| GCAATCCTAAGGCTCCAGCA+AGG | - | chr7_1:57970992-57971011 | None:intergenic | 55.0% | |
| !! | CTATTAGTGGGCTCCCTCTG+AGG | + | chr7_1:57972391-57972410 | Msa1026280:intron | 55.0% |
| !!! | ATTTTGAGGCCGGCCTCAGA+GGG | - | chr7_1:57972407-57972426 | None:intergenic | 55.0% |
| AATGCGGCCGCAATTGTGGT+TGG | + | chr7_1:57972592-57972611 | Msa1026280:intron | 55.0% | |
| ATGCGGCCGCAATTGTGGTT+GGG | + | chr7_1:57972593-57972612 | Msa1026280:intron | 55.0% | |
| CGGCATCCCAACCACAATTG+CGG | - | chr7_1:57972602-57972621 | None:intergenic | 55.0% | |
| !! | AGATGTCTCTGGCTCTGCAG+CGG | - | chr7_1:57972622-57972641 | None:intergenic | 55.0% |
| ACAGTCTCGACAGAAAGGGC+AGG | - | chr7_1:57972761-57972780 | None:intergenic | 55.0% | |
| CCTCCCGTTCTCGGGAAAAG+AGG | - | chr7_1:57969979-57969998 | None:intergenic | 60.0% | |
| ! | CCTCTTTTCCCGAGAACGGG+AGG | + | chr7_1:57969976-57969995 | Msa1026280:intron | 60.0% |
| !! | AGCGGGGGCACCTCAGTTTA+TGG | + | chr7_1:57970292-57970311 | Msa1026280:intron | 60.0% |
| GAAGTGTGCAGCTGGGCTGT+AGG | - | chr7_1:57970937-57970956 | None:intergenic | 60.0% | |
| !!! | GATTTTGAGGCCGGCCTCAG+AGG | - | chr7_1:57972408-57972427 | None:intergenic | 60.0% |
| !! | TAGTGGGCTCCCTCTGAGGC+CGG | + | chr7_1:57972395-57972414 | Msa1026280:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 57969244 | 57973043 | 57969244 | ID=Msa1026280;Name=Msa1026280 |
| chr7_1 | mRNA | 57969244 | 57973043 | 57969244 | ID=Msa1026280-mRNA-1;Parent=Msa1026280;Name=Msa1026280-mRNA-1;_AED=0.01;_eAED=0.01;_QI=138|1|1|1|0.8|0.66|6|89|264 |
| chr7_1 | exon | 57969244 | 57969365 | 57969244 | ID=Msa1026280-mRNA-1:exon:11586;Parent=Msa1026280-mRNA-1 |
| chr7_1 | exon | 57969467 | 57969607 | 57969467 | ID=Msa1026280-mRNA-1:exon:11587;Parent=Msa1026280-mRNA-1 |
| chr7_1 | exon | 57970881 | 57971031 | 57970881 | ID=Msa1026280-mRNA-1:exon:11588;Parent=Msa1026280-mRNA-1 |
| chr7_1 | exon | 57971486 | 57971552 | 57971486 | ID=Msa1026280-mRNA-1:exon:11589;Parent=Msa1026280-mRNA-1 |
| chr7_1 | exon | 57971768 | 57972005 | 57971768 | ID=Msa1026280-mRNA-1:exon:11590;Parent=Msa1026280-mRNA-1 |
| chr7_1 | exon | 57972741 | 57973043 | 57972741 | ID=Msa1026280-mRNA-1:exon:11591;Parent=Msa1026280-mRNA-1 |
| chr7_1 | five_prime_UTR | 57969244 | 57969365 | 57969244 | ID=Msa1026280-mRNA-1:five_prime_utr;Parent=Msa1026280-mRNA-1 |
| chr7_1 | five_prime_UTR | 57969467 | 57969482 | 57969467 | ID=Msa1026280-mRNA-1:five_prime_utr;Parent=Msa1026280-mRNA-1 |
| chr7_1 | CDS | 57969483 | 57969607 | 57969483 | ID=Msa1026280-mRNA-1:cds;Parent=Msa1026280-mRNA-1 |
| chr7_1 | CDS | 57970881 | 57971031 | 57970881 | ID=Msa1026280-mRNA-1:cds;Parent=Msa1026280-mRNA-1 |
| chr7_1 | CDS | 57971486 | 57971552 | 57971486 | ID=Msa1026280-mRNA-1:cds;Parent=Msa1026280-mRNA-1 |
| chr7_1 | CDS | 57971768 | 57972005 | 57971768 | ID=Msa1026280-mRNA-1:cds;Parent=Msa1026280-mRNA-1 |
| chr7_1 | CDS | 57972741 | 57972954 | 57972741 | ID=Msa1026280-mRNA-1:cds;Parent=Msa1026280-mRNA-1 |
| chr7_1 | three_prime_UTR | 57972955 | 57973043 | 57972955 | ID=Msa1026280-mRNA-1:three_prime_utr;Parent=Msa1026280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
