Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152240 | XP_003623294.3 | 83.083 | 266 | 5 | 3 | 1 | 227 | 1 | 265 | 2.28e-150 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152240 | sp|Q9M022|AIRP2_ARATH | 61.739 | 230 | 49 | 2 | 21 | 212 | 1 | 229 | 6.23e-96 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152240 | A0A396H3Z6 | 83.083 | 266 | 5 | 3 | 1 | 227 | 1 | 265 | 1.09e-150 | 429 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0106850 | Msa1152240 | 0.801127 | 1.042473e-48 | -8.615850e-47 |
| Msa0151180 | Msa1152240 | 0.814103 | 1.826634e-51 | -8.615850e-47 |
| Msa0175840 | Msa1152240 | 0.807967 | 3.902024e-50 | -8.615850e-47 |
| Msa0206010 | Msa1152240 | 0.801834 | 7.466601e-49 | -8.615850e-47 |
| Msa1026280 | Msa1152240 | 0.823717 | 1.191471e-53 | -8.615850e-47 |
| Msa1119480 | Msa1152240 | 0.801497 | 8.754899e-49 | -8.615850e-47 |
| Msa1152240 | Msa1353470 | 0.803339 | 3.655094e-49 | -8.615850e-47 |
| Msa1152240 | Msa1393040 | 0.809607 | 1.740588e-50 | -8.615850e-47 |
| Msa1152240 | Msa1397120 | 0.801128 | 1.042180e-48 | -8.615850e-47 |
| Msa1152240 | Msa1407600 | 0.819292 | 1.253882e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152240 | MtrunA17_Chr7g0242261 | 83.083 | 266 | 5 | 3 | 1 | 227 | 1 | 265 | 2.10e-154 | 429 |
| Msa1152240 | MtrunA17_Chr4g0006201 | 64.348 | 230 | 43 | 2 | 21 | 212 | 6 | 234 | 8.45e-103 | 297 |
| Msa1152240 | MtrunA17_Chr4g0047521 | 53.913 | 230 | 67 | 2 | 21 | 212 | 7 | 235 | 1.93e-84 | 251 |
| Msa1152240 | MtrunA17_Chr2g0281861 | 54.222 | 225 | 64 | 2 | 25 | 211 | 14 | 237 | 5.68e-81 | 242 |
| Msa1152240 | MtrunA17_Chr3g0104651 | 49.784 | 231 | 76 | 3 | 20 | 211 | 12 | 241 | 3.61e-74 | 225 |
| Msa1152240 | MtrunA17_Chr8g0376861 | 37.339 | 233 | 100 | 4 | 22 | 209 | 7 | 238 | 4.23e-42 | 143 |
| Msa1152240 | MtrunA17_Chr3g0123161 | 35.443 | 237 | 105 | 3 | 20 | 209 | 8 | 243 | 1.29e-41 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152240 | AT5G01520.1 | 61.739 | 230 | 49 | 2 | 21 | 212 | 1 | 229 | 6.33e-97 | 283 |
| Msa1152240 | AT3G47160.1 | 58.590 | 227 | 55 | 2 | 24 | 212 | 5 | 230 | 5.34e-91 | 268 |
| Msa1152240 | AT3G47160.2 | 55.649 | 239 | 55 | 3 | 24 | 212 | 5 | 242 | 1.75e-87 | 259 |
| Msa1152240 | AT5G58787.1 | 54.468 | 235 | 65 | 3 | 24 | 220 | 5 | 235 | 1.02e-77 | 234 |
| Msa1152240 | AT5G58787.2 | 55.909 | 220 | 70 | 4 | 24 | 220 | 5 | 220 | 2.08e-72 | 220 |
| Msa1152240 | AT3G47160.3 | 55.670 | 194 | 47 | 2 | 57 | 212 | 1 | 193 | 1.54e-71 | 217 |
| Msa1152240 | AT5G01520.2 | 58.382 | 173 | 33 | 2 | 21 | 155 | 1 | 172 | 2.16e-64 | 197 |
| Msa1152240 | AT5G58787.3 | 51.961 | 204 | 71 | 4 | 40 | 220 | 2 | 201 | 3.02e-60 | 188 |
| Msa1152240 | AT1G24440.1 | 36.910 | 233 | 104 | 3 | 19 | 209 | 4 | 235 | 2.37e-45 | 152 |
| Msa1152240 | AT1G13195.1 | 35.526 | 228 | 103 | 4 | 25 | 209 | 16 | 242 | 2.92e-40 | 139 |
| Msa1152240 | AT1G24440.2 | 35.149 | 202 | 88 | 3 | 50 | 209 | 3 | 203 | 9.97e-34 | 120 |
| Msa1152240 | AT1G13195.2 | 33.005 | 203 | 92 | 3 | 50 | 209 | 3 | 204 | 4.35e-31 | 114 |
Find 43 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAAGAAATAGAAGAAAA+AGG | 0.270441 | 7_4:-37528600 | Msa1152240:CDS |
| TGAAATGAGTAATAAATTAA+AGG | 0.281666 | 7_4:+37525280 | None:intergenic |
| TTCTTTCTCTACGTCAATTT+CGG | 0.309086 | 7_4:+37526405 | None:intergenic |
| TAGTACTTTGGTTTGGTACT+AGG | 0.319224 | 7_4:-37528812 | Msa1152240:five_prime_UTR |
| CCTTTGTCTACTAATTCTAT+AGG | 0.338323 | 7_4:+37526436 | None:intergenic |
| TAATTTATTACTCATTTCAT+TGG | 0.347388 | 7_4:-37525276 | Msa1152240:three_prime_UTR |
| AATGATTAATTACAGTGTAT+TGG | 0.386819 | 7_4:+37528509 | None:intergenic |
| GCACATTGAATGATTGCAAT+TGG | 0.387477 | 7_4:+37526333 | None:intergenic |
| TGATGATACCATGTGAATAT+AGG | 0.389904 | 7_4:+37525382 | None:intergenic |
| AAAAGGAAGAAGTGTGCAGC+TGG | 0.412811 | 7_4:+37527269 | None:intergenic |
| ATTGGGCAATACAACTATAC+TGG | 0.421843 | 7_4:+37526351 | None:intergenic |
| TTGAATGAGCTTCCACTAAG+AGG | 0.451798 | 7_4:+37525346 | None:intergenic |
| AACTTGTGGTAGCCTCTTAG+TGG | 0.457673 | 7_4:-37525358 | Msa1152240:exon |
| GATCATGCGAAAGTCTTTCA+AGG | 0.464400 | 7_4:-37528568 | Msa1152240:CDS |
| TTCTGATTATCCAAGTGATC+AGG | 0.471148 | 7_4:-37527327 | Msa1152240:CDS |
| GAGTAAACTCAGGTGACCTA+TGG | 0.482995 | 7_4:-37525508 | Msa1152240:CDS |
| CACATTGAATGATTGCAATT+GGG | 0.497149 | 7_4:+37526334 | None:intergenic |
| GATGATACCATGTGAATATA+GGG | 0.498260 | 7_4:+37525383 | None:intergenic |
| TTAAGACAGTCTCGACAGAA+AGG | 0.506892 | 7_4:+37525533 | None:intergenic |
| TGTAGGACAATCTCATTTGA+AGG | 0.523036 | 7_4:+37527294 | None:intergenic |
| CACAAGTAACTCACCAGTCT+CGG | 0.524523 | 7_4:+37526299 | None:intergenic |
| TCTGTGAAGTTGCAATAAAG+AGG | 0.525633 | 7_4:+37526516 | None:intergenic |
| TAAGACAGTCTCGACAGAAA+GGG | 0.534064 | 7_4:+37525534 | None:intergenic |
| GCATCAAATGCTACCGAGAC+TGG | 0.539433 | 7_4:-37526312 | Msa1152240:intron |
| TAGGCACCATCCTGATCACT+TGG | 0.545027 | 7_4:+37527317 | None:intergenic |
| CAGAGGAATCACTGATGTTG+AGG | 0.550758 | 7_4:-37526497 | Msa1152240:CDS |
| GAAGTGTGCAGCTGGGCTGT+AGG | 0.575455 | 7_4:+37527277 | None:intergenic |
| CTGTGAAGTTGCAATAAAGA+GGG | 0.575980 | 7_4:+37526517 | None:intergenic |
| GAATCACTGATGTTGAGGAT+AGG | 0.580470 | 7_4:-37526492 | Msa1152240:CDS |
| GGACAATCTCATTTGAAGGT+AGG | 0.590167 | 7_4:+37527298 | None:intergenic |
| CCTATAGAATTAGTAGACAA+AGG | 0.597342 | 7_4:-37526436 | Msa1152240:CDS |
| TGCTGCTCATGTACATCCAT+AGG | 0.601320 | 7_4:+37525492 | None:intergenic |
| CATGGTATCATCACAACTTG+TGG | 0.618699 | 7_4:-37525372 | Msa1152240:CDS |
| ACAGTCTCGACAGAAAGGGC+AGG | 0.621628 | 7_4:+37525538 | None:intergenic |
| AGAGTGCGATATTTGCTGCA+TGG | 0.622259 | 7_4:-37526380 | Msa1152240:CDS |
| TGCTAGACCCTATATTCACA+TGG | 0.627686 | 7_4:-37525390 | Msa1152240:CDS |
| TGTCTTAAAAGAGTAAACTC+AGG | 0.633716 | 7_4:-37525518 | Msa1152240:CDS |
| AAAGGAAGAAGTGTGCAGCT+GGG | 0.647627 | 7_4:+37527270 | None:intergenic |
| ATATAGGGTCTAGCAACAAG+AGG | 0.657403 | 7_4:+37525398 | None:intergenic |
| TGATCTTGCTTCAATCAACA+AGG | 0.669497 | 7_4:-37525459 | Msa1152240:CDS |
| CTTCCTTCACATGTAAAACG+AGG | 0.670577 | 7_4:-37528769 | Msa1152240:five_prime_UTR |
| GATTATCCAAGTGATCAGGA+TGG | 0.700149 | 7_4:-37527323 | Msa1152240:CDS |
| TCTTTATTGCAACTTCACAG+AGG | 0.700321 | 7_4:-37526514 | Msa1152240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATGATATTTTATAATTG+TGG | - | chr7_4:37525749-37525768 | Msa1152240:intron | 10.0% |
| !!! | AATTCACTTTTTTTTTTTAA+TGG | - | chr7_4:37526658-37526677 | Msa1152240:intron | 10.0% |
| !!! | ATTCACTTTTTTTTTTTAAT+GGG | - | chr7_4:37526659-37526678 | Msa1152240:intron | 10.0% |
| !! | TTCACAAAAAATAAAATAAA+AGG | + | chr7_4:37527876-37527895 | None:intergenic | 10.0% |
| !!! | TTAATTAGTTTAAAAGAAAA+TGG | - | chr7_4:37528357-37528376 | Msa1152240:intron | 10.0% |
| !!! | TTTATGAATGTTGATTTATA+TGG | - | chr7_4:37525684-37525703 | Msa1152240:intron | 15.0% |
| !!! | TTATATAGTTCTATAATACA+TGG | + | chr7_4:37525777-37525796 | None:intergenic | 15.0% |
| !!! | TTCACTTTTTTTTTTTAATG+GGG | - | chr7_4:37526660-37526679 | Msa1152240:intron | 15.0% |
| !!! | GAATTTTTTCAAATTACTTT+TGG | + | chr7_4:37526753-37526772 | None:intergenic | 15.0% |
| !! | AAGTAATTTGAAAAAATTCA+TGG | - | chr7_4:37526754-37526773 | Msa1152240:intron | 15.0% |
| !! | TATTGAAAACATTTCATAAA+AGG | + | chr7_4:37527275-37527294 | None:intergenic | 15.0% |
| !! | GAATAACTTTAATGATAATA+AGG | - | chr7_4:37527896-37527915 | Msa1152240:intron | 15.0% |
| !! | TGAAATGAGTAATAAATTAA+AGG | + | chr7_4:37528868-37528887 | None:intergenic | 15.0% |
| !! | TAATTTATTACTCATTTCAT+TGG | - | chr7_4:37528869-37528888 | Msa1152240:five_prime_UTR | 15.0% |
| !!! | TTTTTTTTTGTTGTTGTTGT+TGG | - | chr7_4:37525425-37525444 | Msa1152240:CDS | 20.0% |
| !!! | TGTTGTTGGTTTAATTAATT+TGG | - | chr7_4:37525439-37525458 | Msa1152240:CDS | 20.0% |
| !! | TTGGTCACTATATTTATTTA+TGG | - | chr7_4:37525458-37525477 | Msa1152240:CDS | 20.0% |
| !!! | AGTTTTTGAGTTTTATGAAT+GGG | - | chr7_4:37525503-37525522 | Msa1152240:CDS | 20.0% |
| !! | AAGAAAGAAATAGAAGAAAA+AGG | - | chr7_4:37525545-37525564 | Msa1152240:CDS | 20.0% |
| !! | AATGATTAATTACAGTGTAT+TGG | + | chr7_4:37525639-37525658 | None:intergenic | 20.0% |
| !!! | AATGTTGATTTATATGGTTT+TGG | - | chr7_4:37525690-37525709 | Msa1152240:intron | 20.0% |
| !!! | GTCTTGTTTATTTAATTTGT+TGG | - | chr7_4:37525812-37525831 | Msa1152240:intron | 20.0% |
| !! | AAGAGCTTAAATAGATTATA+AGG | + | chr7_4:37526238-37526257 | None:intergenic | 20.0% |
| !! | TATACAAAAGAAACGTAAAA+AGG | + | chr7_4:37526402-37526421 | None:intergenic | 20.0% |
| !!! | TTTACGTTTCTTTTGTATAA+TGG | - | chr7_4:37526403-37526422 | Msa1152240:CDS | 20.0% |
| !! | TATTAAAATACAAGCGAAAT+GGG | + | chr7_4:37526633-37526652 | None:intergenic | 20.0% |
| !! | TTATTAAAATACAAGCGAAA+TGG | + | chr7_4:37526634-37526653 | None:intergenic | 20.0% |
| !! | GCTCAAAATATTTATATACA+AGG | - | chr7_4:37526944-37526963 | Msa1152240:intron | 20.0% |
| !! | AATAAGCTGAAAACAATTTA+TGG | + | chr7_4:37527092-37527111 | None:intergenic | 20.0% |
| !! | AAACATTTCATAAAAGGAAA+AGG | + | chr7_4:37527269-37527288 | None:intergenic | 20.0% |
| !!! | TACAAGTCTATTTTATTAAC+AGG | - | chr7_4:37527595-37527614 | Msa1152240:intron | 20.0% |
| !! | ATTATCTAAGAATTTGGATT+GGG | + | chr7_4:37528201-37528220 | None:intergenic | 20.0% |
| !! | TATTATCTAAGAATTTGGAT+TGG | + | chr7_4:37528202-37528221 | None:intergenic | 20.0% |
| !! | TCTGATATTATCTAAGAATT+TGG | + | chr7_4:37528207-37528226 | None:intergenic | 20.0% |
| !!! | TTCAAACTAAAAAGATTTTG+AGG | + | chr7_4:37528270-37528289 | None:intergenic | 20.0% |
| !!! | TTTAGAATATTGCAAACAAT+TGG | + | chr7_4:37528298-37528317 | None:intergenic | 20.0% |
| !! | ACTAATTAAAAAGATTGTTG+AGG | + | chr7_4:37528346-37528365 | None:intergenic | 20.0% |
| !!! | TGTTCTATTTTCTAGTACTT+TGG | - | chr7_4:37525321-37525340 | Msa1152240:three_prime_UTR | 25.0% |
| !!! | TATTTTCTAGTACTTTGGTT+TGG | - | chr7_4:37525326-37525345 | Msa1152240:three_prime_UTR | 25.0% |
| !!! | CAGTTTTTGAGTTTTATGAA+TGG | - | chr7_4:37525502-37525521 | Msa1152240:CDS | 25.0% |
| !! | AAGCAAGTTATTTCCTAATT+GGG | + | chr7_4:37525722-37525741 | None:intergenic | 25.0% |
| !! | AAAGCAAGTTATTTCCTAAT+TGG | + | chr7_4:37525723-37525742 | None:intergenic | 25.0% |
| ! | AATATGTTTCTTGTGAAAGA+TGG | - | chr7_4:37526155-37526174 | Msa1152240:intron | 25.0% |
| ! | ATAGATTATAAGGAGGTAAA+AGG | + | chr7_4:37526228-37526247 | None:intergenic | 25.0% |
| ! | AGCTTAAATAGATTATAAGG+AGG | + | chr7_4:37526235-37526254 | None:intergenic | 25.0% |
| !!! | TCTTTTTGACATGTTTTGAT+GGG | - | chr7_4:37526254-37526273 | Msa1152240:intron | 25.0% |
| ! | TACATCTAATTTATCGAAGT+TGG | - | chr7_4:37526489-37526508 | Msa1152240:CDS | 25.0% |
| !!! | AAATATTTTGAGCAATCCTA+AGG | + | chr7_4:37526937-37526956 | None:intergenic | 25.0% |
| ! | GGATAAACAACTTAATTAAG+CGG | + | chr7_4:37527213-37527232 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | - | chr7_4:37527218-37527237 | Msa1152240:intron | 25.0% |
| !! | TTTTCTTTCATGAATAGACA+TGG | + | chr7_4:37527417-37527436 | None:intergenic | 25.0% |
| !!! | TAGTTTACCAAATTGACTTT+TGG | + | chr7_4:37527479-37527498 | None:intergenic | 25.0% |
| ! | AAAGTCAATTTGGTAAACTA+TGG | - | chr7_4:37527479-37527498 | Msa1152240:intron | 25.0% |
| !!! | CACAATAATATTTTAACTCG+TGG | + | chr7_4:37527989-37528008 | None:intergenic | 25.0% |
| ! | CACGAGTTAAAATATTATTG+TGG | - | chr7_4:37527987-37528006 | Msa1152240:intron | 25.0% |
| ! | GTTTACATGATTCTAAATTG+AGG | - | chr7_4:37528382-37528401 | Msa1152240:intron | 25.0% |
| TAGAGAAATCATTTGTCTCT+TGG | + | chr7_4:37525877-37525896 | None:intergenic | 30.0% | |
| ACAAATGATTTCTCTACTTG+AGG | - | chr7_4:37525881-37525900 | Msa1152240:intron | 30.0% | |
| AGTTAATCAATATCATCCTC+TGG | - | chr7_4:37526110-37526129 | Msa1152240:intron | 30.0% | |
| TGAAAGATGGATCAAATCAA+TGG | - | chr7_4:37526168-37526187 | Msa1152240:intron | 30.0% | |
| !! | CTCTTTTTGACATGTTTTGA+TGG | - | chr7_4:37526253-37526272 | Msa1152240:intron | 30.0% |
| !!! | CTTTTTGACATGTTTTGATG+GGG | - | chr7_4:37526255-37526274 | Msa1152240:intron | 30.0% |
| !! | AAACGTAAAAAGGTGTTCTT+CGG | + | chr7_4:37526392-37526411 | None:intergenic | 30.0% |
| ! | CGTTTCTTTTGTATAATGGT+CGG | - | chr7_4:37526407-37526426 | Msa1152240:CDS | 30.0% |
| AATTTATCGAAGTTGGAATG+TGG | - | chr7_4:37526496-37526515 | Msa1152240:CDS | 30.0% | |
| TGTCCTATATCAAGATTAGA+CGG | + | chr7_4:37526523-37526542 | None:intergenic | 30.0% | |
| ATTGAAGAAAACTAGTACTC+TGG | + | chr7_4:37526701-37526720 | None:intergenic | 30.0% | |
| ! | ATGGTCTTAACTAATCTTTG+TGG | - | chr7_4:37526773-37526792 | Msa1152240:intron | 30.0% |
| !!! | TCTTCCTTTTTTTGGTTCAA+TGG | - | chr7_4:37526889-37526908 | Msa1152240:intron | 30.0% |
| ! | TTTGGACATGTTTGGAATAT+CGG | - | chr7_4:37526987-37527006 | Msa1152240:intron | 30.0% |
| TAACCATTTATGAGACTGTT+TGG | - | chr7_4:37527036-37527055 | Msa1152240:intron | 30.0% | |
| TTTCCAAACAGTCTCATAAA+TGG | + | chr7_4:37527042-37527061 | None:intergenic | 30.0% | |
| TAGTGAATGATGTACATGTT+TGG | - | chr7_4:37527359-37527378 | Msa1152240:intron | 30.0% | |
| TGAAAGAAAAGCAAGTTTGA+AGG | - | chr7_4:37527427-37527446 | Msa1152240:intron | 30.0% | |
| AGTGTTACCAAAAGTCAATT+TGG | - | chr7_4:37527469-37527488 | Msa1152240:intron | 30.0% | |
| ! | GTCTATTTTATTAACAGGTG+TGG | - | chr7_4:37527600-37527619 | Msa1152240:intron | 30.0% |
| CCTTTGTCTACTAATTCTAT+AGG | + | chr7_4:37527712-37527731 | None:intergenic | 30.0% | |
| CCTATAGAATTAGTAGACAA+AGG | - | chr7_4:37527709-37527728 | Msa1152240:intron | 30.0% | |
| TTCTTTCTCTACGTCAATTT+CGG | + | chr7_4:37527743-37527762 | None:intergenic | 30.0% | |
| CACATTGAATGATTGCAATT+GGG | + | chr7_4:37527814-37527833 | None:intergenic | 30.0% | |
| GCTAAACAATTGAATGAAAG+TGG | - | chr7_4:37527918-37527937 | Msa1152240:intron | 30.0% | |
| CCAAAATGTAGATTCATGTT+TGG | + | chr7_4:37528028-37528047 | None:intergenic | 30.0% | |
| ! | CCAAACATGAATCTACATTT+TGG | - | chr7_4:37528025-37528044 | Msa1152240:intron | 30.0% |
| ! | AACATGAATCTACATTTTGG+AGG | - | chr7_4:37528028-37528047 | Msa1152240:intron | 30.0% |
| ! | TTGATCTTTTGTTGCATTGT+CGG | - | chr7_4:37528071-37528090 | Msa1152240:intron | 30.0% |
| !!! | AACTAAAAAGATTTTGAGGC+CGG | + | chr7_4:37528266-37528285 | None:intergenic | 30.0% |
| ATTAAAAAGATTGTTGAGGC+TGG | + | chr7_4:37528342-37528361 | None:intergenic | 30.0% | |
| ATGATTCTAAATTGAGGTTG+CGG | - | chr7_4:37528388-37528407 | Msa1152240:intron | 30.0% | |
| !! | TTTGTTATTGCGGTAAAATG+CGG | - | chr7_4:37528425-37528444 | Msa1152240:intron | 30.0% |
| AAATTGTCGACGCAATATAA+CGG | + | chr7_4:37528498-37528517 | None:intergenic | 30.0% | |
| TTATAACTGCTACGATTTGA+TGG | - | chr7_4:37528530-37528549 | Msa1152240:CDS | 30.0% | |
| TGTCTTAAAAGAGTAAACTC+AGG | - | chr7_4:37528627-37528646 | Msa1152240:CDS | 30.0% | |
| GATGATACCATGTGAATATA+GGG | + | chr7_4:37528765-37528784 | None:intergenic | 30.0% | |
| TGATGATACCATGTGAATAT+AGG | + | chr7_4:37528766-37528785 | None:intergenic | 30.0% | |
| !! | TAGTACTTTGGTTTGGTACT+AGG | - | chr7_4:37525333-37525352 | Msa1152240:three_prime_UTR | 35.0% |
| ! | ATACCTCGTTTTACATGTGA+AGG | + | chr7_4:37525382-37525401 | None:intergenic | 35.0% |
| !!! | TGGGTTTTGTTCTCAAAAGA+AGG | - | chr7_4:37525522-37525541 | Msa1152240:CDS | 35.0% |
| !! | GTTTTGGATACTACCCAATT+AGG | - | chr7_4:37525706-37525725 | Msa1152240:intron | 35.0% |
| TTGGATCATCTTTAGCAATG+AGG | + | chr7_4:37525858-37525877 | None:intergenic | 35.0% | |
| AATGATTTCTCTACTTGAGG+AGG | - | chr7_4:37525884-37525903 | Msa1152240:intron | 35.0% | |
| AGGTAAGTAAAGTCTCATCA+AGG | + | chr7_4:37525969-37525988 | None:intergenic | 35.0% | |
| ! | TAATCTGGAGTTCATCTAAG+AGG | + | chr7_4:37525989-37526008 | None:intergenic | 35.0% |
| ! | GAAAAGAGGTCTTGATAATC+TGG | + | chr7_4:37526004-37526023 | None:intergenic | 35.0% |
| AGGGGACTTAATTGTAGAAA+CGG | - | chr7_4:37526078-37526097 | Msa1152240:intron | 35.0% | |
| AGATGGATCAAATCAATGGA+TGG | - | chr7_4:37526172-37526191 | Msa1152240:intron | 35.0% | |
| GATGGATCAAATCAATGGAT+GGG | - | chr7_4:37526173-37526192 | Msa1152240:intron | 35.0% | |
| TCAATGGATGGGAAAAAAAG+AGG | - | chr7_4:37526184-37526203 | Msa1152240:intron | 35.0% | |
| GGAAAAAAAGAGGAATCCTT+TGG | - | chr7_4:37526194-37526213 | Msa1152240:intron | 35.0% | |
| GTAAAAGGAAATCATGCCAA+AGG | + | chr7_4:37526213-37526232 | None:intergenic | 35.0% | |
| ATGGAAAAACACCGAAGTAT+TGG | + | chr7_4:37526299-37526318 | None:intergenic | 35.0% | |
| ! | TTTTCCATAATGTTGTAGCC+AGG | - | chr7_4:37526311-37526330 | Msa1152240:intron | 35.0% |
| TTTCCATAATGTTGTAGCCA+GGG | - | chr7_4:37526312-37526331 | Msa1152240:intron | 35.0% | |
| TTCGACTCTTCTTTGTAAAG+AGG | - | chr7_4:37526354-37526373 | Msa1152240:CDS | 35.0% | |
| TTCTGATTATCCAAGTGATC+AGG | - | chr7_4:37526818-37526837 | Msa1152240:intron | 35.0% | |
| TGTAGGACAATCTCATTTGA+AGG | + | chr7_4:37526854-37526873 | None:intergenic | 35.0% | |
| !!! | TGCACACTTCTTCCTTTTTT+TGG | - | chr7_4:37526881-37526900 | Msa1152240:intron | 35.0% |
| CAGTCCATTGAACCAAAAAA+AGG | + | chr7_4:37526896-37526915 | None:intergenic | 35.0% | |
| ATGTCCAAAGTAAAGAGGAA+GGG | + | chr7_4:37526976-37526995 | None:intergenic | 35.0% | |
| CAAACATGTCCAAAGTAAAG+AGG | + | chr7_4:37526981-37527000 | None:intergenic | 35.0% | |
| CTCTTTACTTTGGACATGTT+TGG | - | chr7_4:37526979-37526998 | Msa1152240:intron | 35.0% | |
| CAACATACTAAGACCATGTT+TGG | + | chr7_4:37527234-37527253 | None:intergenic | 35.0% | |
| ATGTACATCATTCACTAGCA+CGG | + | chr7_4:37527356-37527375 | None:intergenic | 35.0% | |
| !! | TGATGTACATGTTTGGTTTG+TGG | - | chr7_4:37527366-37527385 | Msa1152240:intron | 35.0% |
| CTGTGAAGTTGCAATAAAGA+GGG | + | chr7_4:37527631-37527650 | None:intergenic | 35.0% | |
| TCTGTGAAGTTGCAATAAAG+AGG | + | chr7_4:37527632-37527651 | None:intergenic | 35.0% | |
| TCTTTATTGCAACTTCACAG+AGG | - | chr7_4:37527631-37527650 | Msa1152240:intron | 35.0% | |
| ATTGGGCAATACAACTATAC+TGG | + | chr7_4:37527797-37527816 | None:intergenic | 35.0% | |
| GCACATTGAATGATTGCAAT+TGG | + | chr7_4:37527815-37527834 | None:intergenic | 35.0% | |
| ! | CAACATTTTACAGCATGAGA+TGG | + | chr7_4:37528054-37528073 | None:intergenic | 35.0% |
| TCCGAAGATGTGTTTATAAG+TGG | - | chr7_4:37528129-37528148 | Msa1152240:intron | 35.0% | |
| CCCACTTATAAACACATCTT+CGG | + | chr7_4:37528133-37528152 | None:intergenic | 35.0% | |
| CCGAAGATGTGTTTATAAGT+GGG | - | chr7_4:37528130-37528149 | Msa1152240:intron | 35.0% | |
| ATATCTCTCACTTTACACGT+CGG | - | chr7_4:37528155-37528174 | Msa1152240:intron | 35.0% | |
| CCTATCCAAGATCTATTAGT+GGG | - | chr7_4:37528228-37528247 | Msa1152240:intron | 35.0% | |
| TGATTCTAAATTGAGGTTGC+GGG | - | chr7_4:37528389-37528408 | Msa1152240:intron | 35.0% | |
| !!! | CGCTGCAAATTTTGTTATTG+CGG | - | chr7_4:37528415-37528434 | Msa1152240:intron | 35.0% |
| GAATTCTCTTTATGTCCTTC+AGG | - | chr7_4:37528568-37528587 | Msa1152240:CDS | 35.0% | |
| TGATCTTGCTTCAATCAACA+AGG | - | chr7_4:37528686-37528705 | Msa1152240:intron | 35.0% | |
| CTTCCTTCACATGTAAAACG+AGG | - | chr7_4:37525376-37525395 | Msa1152240:CDS | 40.0% | |
| GATCATGCGAAAGTCTTTCA+AGG | - | chr7_4:37525577-37525596 | Msa1152240:intron | 40.0% | |
| TCTACTTGAGGAGGAATCAA+GGG | - | chr7_4:37525893-37525912 | Msa1152240:intron | 40.0% | |
| !! | ACGATTAGAAGTACCGTAAG+TGG | - | chr7_4:37525940-37525959 | Msa1152240:intron | 40.0% |
| ! | TTGTCTCTGATGAGTTGAGA+AGG | - | chr7_4:37526058-37526077 | Msa1152240:intron | 40.0% |
| ! | TGTCTCTGATGAGTTGAGAA+GGG | - | chr7_4:37526059-37526078 | Msa1152240:intron | 40.0% |
| GGGGACTTAATTGTAGAAAC+GGG | - | chr7_4:37526079-37526098 | Msa1152240:intron | 40.0% | |
| GGGACTTAATTGTAGAAACG+GGG | - | chr7_4:37526080-37526099 | Msa1152240:intron | 40.0% | |
| !!! | GACATGTTTTGATGGGGAAA+AGG | - | chr7_4:37526261-37526280 | Msa1152240:intron | 40.0% |
| GATCAGGCATTCCAATACTT+CGG | - | chr7_4:37526285-37526304 | Msa1152240:intron | 40.0% | |
| GTCGAAATTGCCATAAACTG+AGG | + | chr7_4:37526340-37526359 | None:intergenic | 40.0% | |
| ! | AAGGTGTTCTTCGGTTAACT+CGG | + | chr7_4:37526383-37526402 | None:intergenic | 40.0% |
| GGACCGTCTAATCTTGATAT+AGG | - | chr7_4:37526517-37526536 | Msa1152240:CDS | 40.0% | |
| TTCTCTGACTGCAATGAATC+CGG | - | chr7_4:37526579-37526598 | Msa1152240:intron | 40.0% | |
| TCAGTTTGCGATTTGCAATC+CGG | + | chr7_4:37526601-37526620 | None:intergenic | 40.0% | |
| ACTTGGATAATCAGAAGCTC+TGG | + | chr7_4:37526814-37526833 | None:intergenic | 40.0% | |
| GATTATCCAAGTGATCAGGA+TGG | - | chr7_4:37526822-37526841 | Msa1152240:intron | 40.0% | |
| GGACAATCTCATTTGAAGGT+AGG | + | chr7_4:37526850-37526869 | None:intergenic | 40.0% | |
| CTTTCCCTTCCTCTTTACTT+TGG | - | chr7_4:37526969-37526988 | Msa1152240:intron | 40.0% | |
| CATGTCCAAAGTAAAGAGGA+AGG | + | chr7_4:37526977-37526996 | None:intergenic | 40.0% | |
| CAACAGAATAATGTTGGTCG+TGG | + | chr7_4:37527333-37527352 | None:intergenic | 40.0% | |
| GCAAGTTTGAAGGAGTTCTA+TGG | - | chr7_4:37527437-37527456 | Msa1152240:intron | 40.0% | |
| GAATCACTGATGTTGAGGAT+AGG | - | chr7_4:37527653-37527672 | Msa1152240:intron | 40.0% | |
| TGAATGAAAGTGGAACATGC+AGG | - | chr7_4:37527928-37527947 | Msa1152240:intron | 40.0% | |
| GAATGAAAGTGGAACATGCA+GGG | - | chr7_4:37527929-37527948 | Msa1152240:intron | 40.0% | |
| ! | ATCTTTTGTTGCATTGTCGG+TGG | - | chr7_4:37528074-37528093 | Msa1152240:intron | 40.0% |
| !!! | ACTTTACACGTCGGTTTTGT+AGG | - | chr7_4:37528164-37528183 | Msa1152240:intron | 40.0% |
| !!! | CTTTACACGTCGGTTTTGTA+GGG | - | chr7_4:37528165-37528184 | Msa1152240:intron | 40.0% |
| GCCTATCCAAGATCTATTAG+TGG | - | chr7_4:37528227-37528246 | Msa1152240:intron | 40.0% | |
| CCCACTAATAGATCTTGGAT+AGG | + | chr7_4:37528231-37528250 | None:intergenic | 40.0% | |
| TAAGACAGTCTCGACAGAAA+GGG | + | chr7_4:37528614-37528633 | None:intergenic | 40.0% | |
| TTAAGACAGTCTCGACAGAA+AGG | + | chr7_4:37528615-37528634 | None:intergenic | 40.0% | |
| ATATAGGGTCTAGCAACAAG+AGG | + | chr7_4:37528750-37528769 | None:intergenic | 40.0% | |
| TGCTAGACCCTATATTCACA+TGG | - | chr7_4:37528755-37528774 | Msa1152240:intron | 40.0% | |
| CATGGTATCATCACAACTTG+TGG | - | chr7_4:37528773-37528792 | Msa1152240:five_prime_UTR | 40.0% | |
| TTGAATGAGCTTCCACTAAG+AGG | + | chr7_4:37528802-37528821 | None:intergenic | 40.0% | |
| CTCTACTTGAGGAGGAATCA+AGG | - | chr7_4:37525892-37525911 | Msa1152240:intron | 45.0% | |
| CTACTTGAGGAGGAATCAAG+GGG | - | chr7_4:37525894-37525913 | Msa1152240:intron | 45.0% | |
| CTCATCAAGGAGTCCACTTA+CGG | + | chr7_4:37525956-37525975 | None:intergenic | 45.0% | |
| ! | AAGACCTCTTTTCCCGAGAA+CGG | - | chr7_4:37526011-37526030 | Msa1152240:intron | 45.0% |
| ! | GTCTCTGATGAGTTGAGAAG+GGG | - | chr7_4:37526060-37526079 | Msa1152240:intron | 45.0% |
| TTGATGGGGAAAAGGAGATC+AGG | - | chr7_4:37526269-37526288 | Msa1152240:intron | 45.0% | |
| AGGTGTTCTTCGGTTAACTC+GGG | + | chr7_4:37526382-37526401 | None:intergenic | 45.0% | |
| ! | AAAGGAAGAAGTGTGCAGCT+GGG | + | chr7_4:37526878-37526897 | None:intergenic | 45.0% |
| ! | AAAAGGAAGAAGTGTGCAGC+TGG | + | chr7_4:37526879-37526898 | None:intergenic | 45.0% |
| TTTGAGCAATCCTAAGGCTC+CGG | + | chr7_4:37526931-37526950 | None:intergenic | 45.0% | |
| GCACGGCAACAGAATAATGT+TGG | + | chr7_4:37527339-37527358 | None:intergenic | 45.0% | |
| !! | GTACATGTTTGGTTTGTGGC+AGG | - | chr7_4:37527370-37527389 | Msa1152240:intron | 45.0% |
| ! | TGGTTTGTGGCAGGCATATA+AGG | - | chr7_4:37527379-37527398 | Msa1152240:intron | 45.0% |
| TTGTGGCAGGCATATAAGGA+TGG | - | chr7_4:37527383-37527402 | Msa1152240:intron | 45.0% | |
| TGTGGCAGGCATATAAGGAT+GGG | - | chr7_4:37527384-37527403 | Msa1152240:intron | 45.0% | |
| CAGAGGAATCACTGATGTTG+AGG | - | chr7_4:37527648-37527667 | Msa1152240:intron | 45.0% | |
| ! | AGAGTGCGATATTTGCTGCA+TGG | - | chr7_4:37527765-37527784 | Msa1152240:intron | 45.0% |
| CACAAGTAACTCACCAGTCT+CGG | + | chr7_4:37527849-37527868 | None:intergenic | 45.0% | |
| !! | TCGGTTTTGTAGGGTTGAGT+TGG | - | chr7_4:37528174-37528193 | Msa1152240:intron | 45.0% |
| AACTGACGTCGCAGTTACAT+TGG | - | chr7_4:37528316-37528335 | Msa1152240:intron | 45.0% | |
| TTCAGATCTTGCATGCCTGA+AGG | + | chr7_4:37528586-37528605 | None:intergenic | 45.0% | |
| GAGTAAACTCAGGTGACCTA+TGG | - | chr7_4:37528637-37528656 | Msa1152240:exon | 45.0% | |
| TGCTGCTCATGTACATCCAT+AGG | + | chr7_4:37528656-37528675 | None:intergenic | 45.0% | |
| AACTTGTGGTAGCCTCTTAG+TGG | - | chr7_4:37528787-37528806 | Msa1152240:five_prime_UTR | 45.0% | |
| AGGGGTTACCTAGCTAGTGA+AGG | - | chr7_4:37525912-37525931 | Msa1152240:intron | 50.0% | |
| CGTTTCGACCTTCACTAGCT+AGG | + | chr7_4:37525923-37525942 | None:intergenic | 50.0% | |
| ! | AGACCTCTTTTCCCGAGAAC+GGG | - | chr7_4:37526012-37526031 | Msa1152240:intron | 50.0% |
| TGTCTTAACCCTCCCGTTCT+CGG | + | chr7_4:37526027-37526046 | None:intergenic | 50.0% | |
| ! | AGCTGCTTTGCTTCAACCAG+AGG | + | chr7_4:37526129-37526148 | None:intergenic | 50.0% |
| TCTGGTTGAAGCAAAGCAGC+TGG | - | chr7_4:37526128-37526147 | Msa1152240:intron | 50.0% | |
| CTGGTTGAAGCAAAGCAGCT+GGG | - | chr7_4:37526129-37526148 | Msa1152240:intron | 50.0% | |
| TGGTTGAAGCAAAGCAGCTG+GGG | - | chr7_4:37526130-37526149 | Msa1152240:intron | 50.0% | |
| GGTGTTCTTCGGTTAACTCG+GGG | + | chr7_4:37526381-37526400 | None:intergenic | 50.0% | |
| TAGGCACCATCCTGATCACT+TGG | + | chr7_4:37526831-37526850 | None:intergenic | 50.0% | |
| GCATCAAATGCTACCGAGAC+TGG | - | chr7_4:37527833-37527852 | Msa1152240:intron | 50.0% | |
| CGTGGTTGCAACGAGTATGA+CGG | + | chr7_4:37527971-37527990 | None:intergenic | 50.0% | |
| GGGAGCCCACTAATAGATCT+TGG | + | chr7_4:37528236-37528255 | None:intergenic | 50.0% | |
| GTAAAATGCGGCCGCAATTG+TGG | - | chr7_4:37528437-37528456 | Msa1152240:intron | 50.0% | |
| AGATGTCTCTGACTCTGCAG+CGG | + | chr7_4:37528471-37528490 | None:intergenic | 50.0% | |
| ! | CTCTTTTCCCGAGAACGGGA+GGG | - | chr7_4:37526016-37526035 | Msa1152240:intron | 55.0% |
| GTCTTAACCCTCCCGTTCTC+GGG | + | chr7_4:37526026-37526045 | None:intergenic | 55.0% | |
| GCGCCCTGGCTACAACATTA+TGG | + | chr7_4:37526318-37526337 | None:intergenic | 55.0% | |
| TGGACTGACTGTCACCTTGC+CGG | - | chr7_4:37526909-37526928 | Msa1152240:intron | 55.0% | |
| !! | CTATTAGTGGGCTCCCTCTG+AGG | - | chr7_4:37528240-37528259 | Msa1152240:intron | 55.0% |
| !!! | ATTTTGAGGCCGGCCTCAGA+GGG | + | chr7_4:37528256-37528275 | None:intergenic | 55.0% |
| AATGCGGCCGCAATTGTGGT+TGG | - | chr7_4:37528441-37528460 | Msa1152240:intron | 55.0% | |
| ATGCGGCCGCAATTGTGGTT+GGG | - | chr7_4:37528442-37528461 | Msa1152240:intron | 55.0% | |
| CGGCATCCCAACCACAATTG+CGG | + | chr7_4:37528451-37528470 | None:intergenic | 55.0% | |
| ACAGTCTCGACAGAAAGGGC+AGG | + | chr7_4:37528610-37528629 | None:intergenic | 55.0% | |
| CCTCCCGTTCTCGGGAAAAG+AGG | + | chr7_4:37526018-37526037 | None:intergenic | 60.0% | |
| ! | CCTCTTTTCCCGAGAACGGG+AGG | - | chr7_4:37526015-37526034 | Msa1152240:intron | 60.0% |
| ! | AGCCAGGGCGCCTCAGTTTA+TGG | - | chr7_4:37526327-37526346 | Msa1152240:CDS | 60.0% |
| ! | TGCCATAAACTGAGGCGCCC+TGG | + | chr7_4:37526332-37526351 | None:intergenic | 60.0% |
| GAAGTGTGCAGCTGGGCTGT+AGG | + | chr7_4:37526871-37526890 | None:intergenic | 60.0% | |
| TGTCACCTTGCCGGAGCCTT+AGG | - | chr7_4:37526918-37526937 | Msa1152240:intron | 60.0% | |
| GCAATCCTAAGGCTCCGGCA+AGG | + | chr7_4:37526926-37526945 | None:intergenic | 60.0% | |
| !!! | GATTTTGAGGCCGGCCTCAG+AGG | + | chr7_4:37528257-37528276 | None:intergenic | 60.0% |
| !! | TAGTGGGCTCCCTCTGAGGC+CGG | - | chr7_4:37528244-37528263 | Msa1152240:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 37525269 | 37528898 | 37525269 | ID=Msa1152240;Name=Msa1152240 |
| chr7_4 | mRNA | 37525269 | 37528898 | 37525269 | ID=Msa1152240-mRNA-1;Parent=Msa1152240;Name=Msa1152240-mRNA-1;_AED=0.07;_eAED=0.07;_QI=148|0.75|0.8|1|0.25|0.4|5|92|227 |
| chr7_4 | exon | 37525269 | 37525577 | 37525269 | ID=Msa1152240-mRNA-1:exon:8915;Parent=Msa1152240-mRNA-1 |
| chr7_4 | exon | 37526313 | 37526550 | 37526313 | ID=Msa1152240-mRNA-1:exon:8914;Parent=Msa1152240-mRNA-1 |
| chr7_4 | exon | 37527249 | 37527352 | 37527249 | ID=Msa1152240-mRNA-1:exon:8913;Parent=Msa1152240-mRNA-1 |
| chr7_4 | exon | 37528522 | 37528662 | 37528522 | ID=Msa1152240-mRNA-1:exon:8912;Parent=Msa1152240-mRNA-1 |
| chr7_4 | exon | 37528767 | 37528898 | 37528767 | ID=Msa1152240-mRNA-1:exon:8911;Parent=Msa1152240-mRNA-1 |
| chr7_4 | five_prime_UTR | 37528767 | 37528898 | 37528767 | ID=Msa1152240-mRNA-1:five_prime_utr;Parent=Msa1152240-mRNA-1 |
| chr7_4 | five_prime_UTR | 37528647 | 37528662 | 37528647 | ID=Msa1152240-mRNA-1:five_prime_utr;Parent=Msa1152240-mRNA-1 |
| chr7_4 | CDS | 37528522 | 37528646 | 37528522 | ID=Msa1152240-mRNA-1:cds;Parent=Msa1152240-mRNA-1 |
| chr7_4 | CDS | 37527249 | 37527352 | 37527249 | ID=Msa1152240-mRNA-1:cds;Parent=Msa1152240-mRNA-1 |
| chr7_4 | CDS | 37526313 | 37526550 | 37526313 | ID=Msa1152240-mRNA-1:cds;Parent=Msa1152240-mRNA-1 |
| chr7_4 | CDS | 37525361 | 37525577 | 37525361 | ID=Msa1152240-mRNA-1:cds;Parent=Msa1152240-mRNA-1 |
| chr7_4 | three_prime_UTR | 37525269 | 37525360 | 37525269 | ID=Msa1152240-mRNA-1:three_prime_utr;Parent=Msa1152240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
