AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1028560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028560 MtrunA17_Chr7g0248721 95.890 219 8 1 1 219 1 218 2.18e-157 434
Msa1028560 MtrunA17_Chr7g0224801 71.264 87 25 0 129 215 81 167 4.59e-42 140
Msa1028560 MtrunA17_Chr8g0335811 66.265 83 27 1 119 200 132 214 2.19e-35 125
Msa1028560 MtrunA17_Chr8g0386241 50.893 112 52 1 100 211 65 173 2.48e-33 118
Msa1028560 MtrunA17_Chr2g0294231 75.000 72 18 0 127 198 189 260 2.73e-32 120
Msa1028560 MtrunA17_Chr1g0194481 70.130 77 23 0 122 198 139 215 8.79e-32 118
Msa1028560 MtrunA17_Chr5g0443131 72.603 73 20 0 127 199 143 215 9.34e-31 115
Msa1028560 MtrunA17_Chr7g0270191 56.566 99 34 1 100 198 113 202 1.14e-30 114
Msa1028560 MtrunA17_Chr4g0051881 69.863 73 22 0 127 199 164 236 1.41e-30 115
Msa1028560 MtrunA17_Chr3g0129361 60.976 82 31 1 127 207 130 211 5.25e-30 110
Msa1028560 MtrunA17_Chr5g0418781 59.783 92 28 1 106 197 98 180 1.08e-29 111
Msa1028560 MtrunA17_Chr8g0383351 65.278 72 24 1 127 197 145 216 3.14e-29 109
Msa1028560 MtrunA17_Chr1g0150801 40.957 188 79 7 14 198 1 159 1.00e-28 105
Msa1028560 MtrunA17_Chr3g0129321 55.556 90 37 2 113 199 89 178 1.71e-28 106
Msa1028560 MtrunA17_Chr7g0218081 61.039 77 30 0 121 197 390 466 1.58e-27 108
Msa1028560 MtrunA17_Chr7g0218081 59.677 62 24 1 136 197 223 283 6.80e-19 84.7
Msa1028560 MtrunA17_Chr5g0432161 54.444 90 41 0 108 197 388 477 1.05e-26 107
Msa1028560 MtrunA17_Chr5g0432161 56.897 58 24 1 141 198 244 300 1.56e-15 74.7
Msa1028560 MtrunA17_Chr5g0418191 60.526 76 30 0 122 197 301 376 2.33e-26 105
Msa1028560 MtrunA17_Chr5g0418191 48.810 84 38 2 128 207 138 220 6.17e-18 81.6
Msa1028560 MtrunA17_Chr4g0042831 44.167 120 67 0 78 197 215 334 2.67e-26 104
Msa1028560 MtrunA17_Chr4g0042831 53.226 62 29 0 136 197 140 201 3.49e-16 76.3
Msa1028560 MtrunA17_Chr3g0079691 48.598 107 49 1 97 197 445 551 3.76e-26 105
Msa1028560 MtrunA17_Chr3g0079691 62.069 58 21 1 141 198 280 336 1.93e-18 83.2
Msa1028560 MtrunA17_Chr4g0068541 58.974 78 32 0 128 205 195 272 8.75e-26 103
Msa1028560 MtrunA17_Chr8g0383251 50.549 91 40 1 128 218 95 180 4.33e-25 97.1
Msa1028560 MtrunA17_Chr5g0445311 58.974 78 32 0 120 197 343 420 6.14e-25 102
Msa1028560 MtrunA17_Chr5g0445311 58.621 58 23 1 141 198 200 256 1.13e-16 78.2
Msa1028560 MtrunA17_Chr3g0101131 58.974 78 32 0 120 197 394 471 8.69e-25 101
Msa1028560 MtrunA17_Chr3g0101131 54.688 64 28 1 135 198 237 299 1.91e-17 80.5
Msa1028560 MtrunA17_Chr7g0243891 51.579 95 38 1 111 197 336 430 9.15e-25 101
Msa1028560 MtrunA17_Chr7g0243891 56.897 58 24 1 141 198 216 272 2.11e-15 74.3
Msa1028560 MtrunA17_Chr3g0106491 54.023 87 40 0 111 197 335 421 1.14e-24 100
Msa1028560 MtrunA17_Chr3g0106491 58.621 58 23 1 141 198 198 254 1.48e-15 74.7
Msa1028560 MtrunA17_Chr4g0004911 59.211 76 31 0 122 197 317 392 1.46e-24 100
Msa1028560 MtrunA17_Chr4g0004911 55.172 58 26 0 141 198 184 241 2.78e-16 77.0
Msa1028560 MtrunA17_Chr7g0249301 54.545 77 35 0 121 197 272 348 9.70e-24 97.4
Msa1028560 MtrunA17_Chr7g0249301 58.621 58 23 1 140 197 61 117 2.56e-15 73.9
Msa1028560 MtrunA17_Chr7g0249311 51.064 94 46 0 104 197 355 448 2.40e-23 97.4
Msa1028560 MtrunA17_Chr7g0249311 63.158 57 20 1 141 197 179 234 1.08e-17 81.3
Msa1028560 MtrunA17_Chr7g0263531 43.750 112 51 1 98 197 306 417 7.27e-22 92.8
Msa1028560 MtrunA17_Chr7g0263531 62.500 56 20 1 142 197 190 244 2.53e-16 77.0
Msa1028560 MtrunA17_Chr2g0302391 35.088 171 85 6 58 207 116 281 1.66e-21 91.7
Msa1028560 MtrunA17_Chr7g0270831 39.568 139 58 3 61 198 161 274 2.11e-21 91.3
Msa1028560 MtrunA17_Chr3g0099641 50.575 87 39 2 125 207 235 321 2.50e-21 91.3
Msa1028560 MtrunA17_Chr2g0288871 50.000 80 39 1 120 198 284 363 2.75e-21 91.7
Msa1028560 MtrunA17_Chr2g0333851 52.564 78 34 2 124 198 150 227 6.97e-21 88.6
Msa1028560 MtrunA17_Chr4g0075201 48.750 80 40 1 120 198 246 325 7.23e-21 90.1
Msa1028560 MtrunA17_Chr6g0485431 50.685 73 35 1 126 197 139 211 7.80e-21 89.4
Msa1028560 MtrunA17_Chr7g0238921 63.158 57 21 0 141 197 124 180 2.87e-20 87.0
Msa1028560 MtrunA17_Chr5g0447701 54.286 70 32 0 128 197 239 308 6.12e-20 87.0
Msa1028560 MtrunA17_Chr5g0447701 53.226 62 28 1 137 198 88 148 1.44e-14 71.6
Msa1028560 MtrunA17_Chr1g0147881 42.857 98 52 2 108 204 232 326 8.76e-20 85.9
Msa1028560 MtrunA17_Chr4g0025061 44.211 95 49 2 128 218 347 441 2.17e-19 86.3
Msa1028560 MtrunA17_Chr1g0189391 37.097 124 64 3 81 197 38 154 2.21e-19 84.7
Msa1028560 MtrunA17_Chr2g0322391 46.250 80 42 1 119 197 327 406 5.13e-19 85.1
Msa1028560 MtrunA17_Chr7g0216891 51.389 72 34 1 128 198 206 277 5.91e-19 84.7
Msa1028560 MtrunA17_Chr4g0074001 37.500 128 70 2 80 197 288 415 9.10e-19 84.3
Msa1028560 MtrunA17_Chr4g0060271 50.667 75 36 1 124 197 238 312 1.12e-18 84.0
Msa1028560 MtrunA17_Chr1g0188941 46.053 76 41 0 122 197 32 107 1.34e-18 78.2
Msa1028560 MtrunA17_Chr4g0051181 52.778 72 33 1 128 198 230 301 1.44e-18 83.6
Msa1028560 MtrunA17_Chr4g0025051 33.784 148 89 3 60 198 246 393 1.50e-18 83.6
Msa1028560 MtrunA17_Chr4g0053281 44.186 86 44 2 113 197 241 323 4.60e-18 81.3
Msa1028560 MtrunA17_Chr7g0270051 50.000 72 35 1 142 212 54 125 2.21e-17 78.6
Msa1028560 MtrunA17_Chr4g0071521 45.783 83 41 2 116 197 223 302 2.31e-17 79.0
Msa1028560 MtrunA17_Chr4g0001361 47.436 78 38 2 124 198 143 220 3.12e-17 78.6
Msa1028560 MtrunA17_Chr3g0126391 34.532 139 81 3 80 210 67 203 1.61e-16 77.0
Msa1028560 MtrunA17_Chr1g0150281 54.098 61 27 1 142 201 141 201 2.07e-16 75.9
Msa1028560 MtrunA17_Chr1g0150271 51.667 60 28 1 139 197 99 158 5.78e-16 74.3
Msa1028560 MtrunA17_Chr5g0401821 36.134 119 71 2 80 197 142 256 6.26e-16 74.3
Msa1028560 MtrunA17_Chr3g0136961 47.368 76 37 2 125 197 120 195 8.37e-16 74.3
Msa1028560 MtrunA17_Chr1g0184691 43.373 83 43 2 116 197 271 350 1.21e-15 74.7
Msa1028560 MtrunA17_Chr2g0315361 50.769 65 29 1 134 195 141 205 2.24e-15 73.6
Msa1028560 MtrunA17_Chr8g0387501 50.769 65 31 1 135 198 123 187 3.01e-15 72.8
Msa1028560 MtrunA17_Chr8g0387981 42.056 107 43 5 97 195 94 189 3.71e-15 73.2
Msa1028560 MtrunA17_Chr2g0293481 41.860 86 47 3 116 198 240 325 5.88e-15 73.2
Msa1028560 MtrunA17_Chr5g0447711 40.506 79 47 0 119 197 208 286 6.53e-15 72.0
Msa1028560 MtrunA17_Chr5g0447711 41.176 68 37 2 133 198 73 139 2.90e-11 61.6
Msa1028560 MtrunA17_Chr7g0248691 41.667 84 40 2 116 198 137 212 1.54e-14 71.2
Msa1028560 MtrunA17_Chr8g0347251 40.964 83 41 2 121 195 111 193 2.45e-14 70.9
Msa1028560 MtrunA17_Chr7g0275531 52.542 59 25 1 140 195 117 175 8.08e-14 69.3
Msa1028560 MtrunA17_Chr8g0348311 46.875 64 33 1 136 198 150 213 1.31e-13 68.6
Msa1028560 MtrunA17_Chr1g0202461 45.312 64 34 1 135 197 255 318 1.41e-13 68.9
Msa1028560 MtrunA17_Chr8g0379461 49.123 57 28 1 142 197 77 133 1.44e-13 67.8
Msa1028560 MtrunA17_Chr8g0334541 51.562 64 26 2 141 201 103 164 1.55e-13 67.8
Msa1028560 MtrunA17_Chr3g0139021 39.759 83 46 2 116 197 292 371 1.75e-13 68.6
Msa1028560 MtrunA17_Chr2g0284321 49.123 57 28 1 142 197 36 92 1.76e-13 67.0
Msa1028560 MtrunA17_Chr4g0024391 41.667 72 41 1 128 198 216 287 2.62e-13 68.2
Msa1028560 MtrunA17_Chr2g0315381 36.937 111 55 4 108 205 101 209 2.83e-13 67.4
Msa1028560 MtrunA17_Chr7g0228941 38.542 96 53 4 119 213 33 123 2.93e-13 64.3
Msa1028560 MtrunA17_Chr7g0244981 50.000 58 26 1 141 195 122 179 2.95e-13 67.4
Msa1028560 MtrunA17_Chr5g0432071 50.877 57 27 1 141 197 104 159 6.34e-13 65.5
Msa1028560 MtrunA17_Chr3g0128671 32.061 131 74 4 85 205 67 192 8.33e-13 66.2
Msa1028560 MtrunA17_Chr8g0350621 34.343 99 52 3 115 202 77 173 1.07e-12 65.5
Msa1028560 MtrunA17_Chr2g0289181 43.548 62 34 1 137 197 10 71 2.91e-12 63.9
Msa1028560 MtrunA17_Chr2g0315371 40.741 81 42 3 118 195 121 198 3.77e-12 64.3
Msa1028560 MtrunA17_Chr7g0244971 45.763 59 29 1 140 195 122 180 3.89e-12 64.3
Msa1028560 MtrunA17_Chr2g0319961 49.123 57 28 1 142 197 81 137 7.40e-12 63.2
Msa1028560 MtrunA17_Chr5g0428351 44.444 63 32 1 136 195 178 240 1.68e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028560 AT5G41570.1 72.174 115 24 1 105 219 70 176 1.19e-57 180
Msa1028560 AT1G64000.1 73.529 102 27 0 118 219 91 192 5.80e-55 174
Msa1028560 AT2G46130.1 78.571 98 21 0 122 219 11 108 8.24e-54 168
Msa1028560 AT2G46130.2 74.490 98 21 1 122 219 11 104 3.39e-48 154
Msa1028560 AT5G13080.1 68.478 92 29 0 128 219 54 145 3.13e-42 140
Msa1028560 AT2G44745.1 64.557 79 28 0 119 197 123 201 5.61e-34 121
Msa1028560 AT3G01970.1 59.551 89 36 0 128 216 52 140 7.31e-33 116
Msa1028560 AT1G69310.4 51.667 120 52 2 78 197 90 203 2.43e-31 116
Msa1028560 AT1G69310.2 51.667 120 52 2 78 197 90 203 2.43e-31 116
Msa1028560 AT1G69310.1 51.667 120 52 2 78 197 90 203 2.43e-31 116
Msa1028560 AT4G18170.1 63.529 85 27 1 118 198 145 229 6.97e-31 115
Msa1028560 AT1G29860.1 73.239 71 19 0 128 198 123 193 2.08e-30 114
Msa1028560 AT5G46350.1 40.323 186 85 4 28 198 66 240 2.11e-30 114
Msa1028560 AT5G49520.1 74.648 71 18 0 128 198 208 278 8.84e-30 114
Msa1028560 AT2G03340.1 44.275 131 69 1 71 197 341 471 4.54e-29 114
Msa1028560 AT2G03340.1 56.061 66 28 1 132 197 241 305 7.00e-18 82.0
Msa1028560 AT4G39410.1 59.494 79 32 0 119 197 201 279 8.15e-29 110
Msa1028560 AT2G47260.1 59.783 92 28 1 106 197 148 230 4.04e-28 108
Msa1028560 AT2G38470.1 53.398 103 40 1 103 197 316 418 2.75e-26 105
Msa1028560 AT2G38470.1 56.897 58 24 1 141 198 184 240 2.97e-14 71.6
Msa1028560 AT1G13960.1 38.710 155 89 2 49 197 311 465 2.94e-26 105
Msa1028560 AT1G13960.1 58.065 62 25 1 136 197 224 284 2.72e-17 80.1
Msa1028560 AT1G13960.2 38.710 155 89 2 49 197 158 312 4.18e-26 103
Msa1028560 AT1G13960.2 58.065 62 25 1 136 197 71 131 8.56e-17 78.2
Msa1028560 AT1G69310.3 48.333 120 52 3 78 197 90 199 7.88e-26 101
Msa1028560 AT5G64810.1 49.438 89 43 1 111 197 78 166 2.50e-25 98.2
Msa1028560 AT2G04880.2 51.648 91 39 1 112 197 249 339 3.13e-25 102
Msa1028560 AT2G04880.2 55.000 60 26 1 139 198 109 167 5.54e-16 76.3
Msa1028560 AT2G04880.1 51.648 91 39 1 112 197 273 363 4.18e-25 102
Msa1028560 AT2G04880.1 55.000 60 26 1 139 198 109 167 6.02e-16 76.3
Msa1028560 AT5G56270.1 53.191 94 44 0 104 197 450 543 4.33e-25 103
Msa1028560 AT5G56270.1 59.649 57 22 1 141 197 273 328 1.36e-16 78.6
Msa1028560 AT3G62340.1 35.676 185 110 2 22 203 2 180 6.01e-25 99.4
Msa1028560 AT4G26640.5 59.211 76 31 0 122 197 186 261 6.49e-25 100
Msa1028560 AT4G26640.5 58.333 60 24 1 139 198 33 91 3.82e-17 79.3
Msa1028560 AT4G26640.6 59.211 76 31 0 122 197 186 261 6.49e-25 100
Msa1028560 AT4G26640.6 58.333 60 24 1 139 198 33 91 3.82e-17 79.3
Msa1028560 AT4G26640.4 59.211 76 31 0 122 197 186 261 6.49e-25 100
Msa1028560 AT4G26640.4 58.333 60 24 1 139 198 33 91 3.82e-17 79.3
Msa1028560 AT4G26640.3 59.211 76 31 0 122 197 186 261 6.49e-25 100
Msa1028560 AT4G26640.3 58.333 60 24 1 139 198 33 91 3.82e-17 79.3
Msa1028560 AT5G26170.1 60.000 70 28 0 128 197 100 169 6.97e-25 96.7
Msa1028560 AT4G26640.7 59.211 76 31 0 122 197 322 397 7.15e-25 102
Msa1028560 AT4G26640.7 58.333 60 24 1 139 198 169 227 2.73e-17 80.1
Msa1028560 AT4G26640.1 59.211 76 31 0 122 197 290 365 7.55e-25 101
Msa1028560 AT4G26640.1 58.333 60 24 1 139 198 137 195 2.93e-17 80.1
Msa1028560 AT4G26640.2 59.211 76 31 0 122 197 362 437 8.66e-25 102
Msa1028560 AT4G26640.2 58.333 60 24 1 139 198 209 267 2.80e-17 80.5
Msa1028560 AT3G01080.2 57.895 76 32 0 122 197 325 400 9.13e-25 101
Msa1028560 AT3G01080.2 57.377 61 25 1 137 197 201 260 1.79e-16 77.8
Msa1028560 AT3G01080.1 57.895 76 32 0 122 197 287 362 1.31e-24 100
Msa1028560 AT3G01080.1 57.377 61 25 1 137 197 163 222 3.05e-16 77.0
Msa1028560 AT2G30250.1 58.974 78 32 0 120 197 307 384 4.77e-24 98.6
Msa1028560 AT2G30250.1 41.772 79 40 2 120 198 150 222 4.73e-13 67.8
Msa1028560 AT5G07100.1 45.299 117 61 1 81 197 177 290 5.98e-24 97.4
Msa1028560 AT5G07100.1 45.714 70 38 0 129 198 105 174 2.20e-14 70.9
Msa1028560 AT5G07100.2 45.299 117 61 1 81 197 84 197 9.68e-24 94.7
Msa1028560 AT5G07100.2 45.714 70 38 0 129 198 12 81 2.48e-14 69.7
Msa1028560 AT5G07100.4 45.299 117 61 1 81 197 84 197 9.68e-24 94.7
Msa1028560 AT5G07100.4 45.714 70 38 0 129 198 12 81 2.48e-14 69.7
Msa1028560 AT5G07100.5 45.299 117 61 1 81 197 84 197 9.68e-24 94.7
Msa1028560 AT5G07100.5 45.714 70 38 0 129 198 12 81 2.48e-14 69.7
Msa1028560 AT5G07100.3 45.299 117 61 1 81 197 84 197 9.68e-24 94.7
Msa1028560 AT5G07100.3 45.714 70 38 0 129 198 12 81 2.48e-14 69.7
Msa1028560 AT4G26440.1 51.064 94 46 0 104 197 335 428 2.78e-23 97.8
Msa1028560 AT4G26440.1 59.649 57 22 1 141 197 178 233 1.67e-16 78.2
Msa1028560 AT1G55600.1 53.846 78 36 0 122 199 288 365 3.66e-23 97.1
Msa1028560 AT4G04450.2 47.126 87 45 1 113 198 170 256 1.70e-21 92.0
Msa1028560 AT1G62300.1 51.250 80 38 1 120 198 291 370 2.79e-21 92.0
Msa1028560 AT4G04450.1 47.126 87 45 1 113 198 264 350 6.01e-21 90.9
Msa1028560 AT4G22070.4 50.000 80 39 1 120 198 276 355 8.48e-21 90.5
Msa1028560 AT4G22070.3 50.000 80 39 1 120 198 276 355 8.48e-21 90.5
Msa1028560 AT4G22070.2 50.000 80 39 1 120 198 276 355 8.48e-21 90.5
Msa1028560 AT4G22070.1 50.000 80 39 1 120 198 276 355 8.48e-21 90.5
Msa1028560 AT2G37260.3 40.351 114 64 1 84 197 216 325 3.84e-20 87.4
Msa1028560 AT2G37260.3 52.703 74 33 2 125 197 68 140 7.81e-16 75.5
Msa1028560 AT2G37260.2 40.351 114 64 1 84 197 214 323 3.84e-20 87.4
Msa1028560 AT2G37260.2 52.703 74 33 2 125 197 66 138 8.02e-16 75.5
Msa1028560 AT2G37260.1 40.351 114 64 1 84 197 296 405 4.96e-20 87.8
Msa1028560 AT2G37260.1 52.703 74 33 2 125 197 148 220 8.11e-16 75.9
Msa1028560 AT5G43290.1 49.333 75 37 1 124 197 96 170 5.55e-20 85.9
Msa1028560 AT1G18860.1 52.500 80 33 2 120 198 222 297 6.10e-20 87.8
Msa1028560 AT2G24570.1 38.532 109 63 2 108 215 213 318 1.61e-19 85.5
Msa1028560 AT4G01720.1 54.167 72 32 1 128 198 226 297 2.65e-19 85.9
Msa1028560 AT2G21900.1 40.196 102 54 2 105 203 74 171 3.67e-19 82.4
Msa1028560 AT1G80840.1 48.052 77 37 2 125 198 128 204 4.90e-19 84.0
Msa1028560 AT1G68150.1 52.778 72 33 1 128 198 222 293 7.03e-19 84.3
Msa1028560 AT5G15130.2 36.879 141 80 4 58 197 110 242 1.04e-18 84.3
Msa1028560 AT5G15130.1 36.879 141 80 4 58 197 152 284 1.46e-18 84.0
Msa1028560 AT2G25000.2 46.154 78 41 1 121 197 83 160 3.06e-18 80.5
Msa1028560 AT2G25000.4 46.154 78 41 1 121 197 83 160 3.06e-18 80.5
Msa1028560 AT4G30935.1 46.154 78 42 0 120 197 310 387 4.48e-18 82.4
Msa1028560 AT5G28650.1 39.806 103 55 3 96 197 223 319 4.56e-18 81.6
Msa1028560 AT2G25000.3 46.154 78 41 1 121 197 105 182 5.09e-18 80.1
Msa1028560 AT4G31550.1 36.752 117 69 3 92 207 201 313 6.76e-18 80.9
Msa1028560 AT2G30590.1 31.210 157 88 5 43 198 234 371 7.40e-18 81.3
Msa1028560 AT2G25000.1 46.154 78 41 1 121 197 126 203 7.81e-18 80.1
Msa1028560 AT3G04670.1 39.806 103 55 3 96 197 223 319 3.38e-17 79.0
Msa1028560 AT4G31550.2 39.785 93 52 2 116 207 223 312 3.69e-17 79.0
Msa1028560 AT4G24240.1 37.097 124 63 4 85 207 237 346 4.41e-17 79.0
Msa1028560 AT3G01080.3 57.377 61 25 1 137 197 201 260 4.59e-17 78.6
Msa1028560 AT4G31800.2 52.542 59 27 1 140 197 110 168 8.02e-17 77.0
Msa1028560 AT4G31800.1 52.542 59 27 1 140 197 175 233 1.16e-16 77.4
Msa1028560 AT2G34830.1 40.367 109 61 4 93 198 166 273 1.20e-16 78.2
Msa1028560 AT2G34830.2 40.367 109 61 4 93 198 175 282 1.37e-16 78.2
Msa1028560 AT2G23320.1 31.928 166 73 8 37 197 167 297 4.74e-16 75.9
Msa1028560 AT5G24110.1 42.529 87 40 3 120 196 85 171 7.97e-16 75.1
Msa1028560 AT1G69810.2 37.500 128 62 5 74 198 92 204 1.50e-15 74.3
Msa1028560 AT1G69810.1 37.500 128 62 5 74 198 150 262 1.96e-15 74.7
Msa1028560 AT1G30650.1 37.815 119 69 5 83 198 159 275 2.47e-15 74.3
Msa1028560 AT5G45260.1 42.169 83 36 3 119 198 1195 1268 7.16e-15 73.6
Msa1028560 AT5G45050.4 35.000 160 68 6 55 207 978 1108 9.29e-15 73.2
Msa1028560 AT5G45050.1 35.000 160 68 6 55 207 1117 1247 1.01e-14 73.2
Msa1028560 AT2G40740.1 49.275 69 32 1 130 195 162 230 1.01e-14 71.6
Msa1028560 AT5G45050.2 35.000 160 68 6 55 207 1089 1219 1.05e-14 73.2
Msa1028560 AT4G23810.1 43.038 79 40 2 134 209 151 227 1.20e-14 72.0
Msa1028560 AT2G40740.3 49.275 69 32 1 130 195 171 239 1.31e-14 71.6
Msa1028560 AT3G56400.1 47.143 70 32 2 139 205 118 185 3.48e-14 70.5
Msa1028560 AT1G29280.1 50.000 58 28 1 142 198 75 132 4.88e-14 69.3
Msa1028560 AT2G46400.1 44.706 85 41 3 121 202 85 166 1.34e-13 68.6
Msa1028560 AT4G01250.1 44.444 72 39 1 142 212 129 200 1.41e-13 68.6
Msa1028560 AT5G52830.1 47.619 63 32 1 137 198 161 223 1.68e-13 68.9
Msa1028560 AT4G12020.4 44.595 74 40 1 124 197 451 523 2.56e-13 68.9
Msa1028560 AT4G12020.10 44.595 74 40 1 124 197 451 523 2.61e-13 68.9
Msa1028560 AT4G12020.2 44.595 74 40 1 124 197 451 523 2.64e-13 68.9
Msa1028560 AT4G12020.3 44.595 74 40 1 124 197 451 523 2.71e-13 68.9
Msa1028560 AT4G12020.6 44.595 74 40 1 124 197 451 523 2.85e-13 68.9
Msa1028560 AT4G12020.8 44.595 74 40 1 124 197 451 523 2.85e-13 68.9
Msa1028560 AT4G12020.5 44.595 74 40 1 124 197 384 456 2.86e-13 68.9
Msa1028560 AT4G12020.7 44.595 74 40 1 124 197 451 523 2.94e-13 68.9
Msa1028560 AT4G12020.1 44.595 74 40 1 124 197 451 523 3.05e-13 68.9
Msa1028560 AT4G12020.9 44.595 74 40 1 124 197 451 523 3.05e-13 68.9
Msa1028560 AT4G12020.11 44.595 74 40 1 124 197 451 523 4.90e-13 68.2
Msa1028560 AT4G11070.2 42.169 83 40 2 121 195 84 166 5.54e-13 67.0
Msa1028560 AT3G58710.1 51.724 58 27 1 142 198 72 129 6.36e-13 66.6
Msa1028560 AT3G58710.2 51.724 58 27 1 142 198 71 128 6.69e-13 66.6
Msa1028560 AT4G11070.1 42.169 83 40 2 121 195 116 198 8.25e-13 66.6
Msa1028560 AT2G40750.1 39.326 89 50 2 111 195 121 209 1.04e-12 66.6
Msa1028560 AT1G66560.1 50.000 58 26 1 141 195 103 160 1.13e-12 65.5
Msa1028560 AT4G23550.1 46.774 62 32 1 137 197 136 197 1.37e-12 65.9
Msa1028560 AT5G01900.1 38.298 94 51 2 105 195 78 167 3.49e-12 64.3
Msa1028560 AT5G22570.1 41.333 75 41 1 135 206 104 178 6.81e-12 63.9
Msa1028560 AT1G66550.2 46.552 58 28 1 141 195 103 160 3.25e-11 61.6
Msa1028560 AT1G66550.1 46.552 58 28 1 141 195 108 165 3.94e-11 61.2
Msa1028560 AT1G66600.1 47.458 59 28 1 140 195 102 160 8.12e-11 60.5

Find 52 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTCATCTTCTTCTAATT+TGG 0.109939 7_1:+61606468 Msa1028560:CDS
AAGAAGTGTTGATGATATTT+TGG 0.221201 7_1:+61606621 Msa1028560:CDS
ACAACAATAACTTGCTTGTT+GGG 0.273574 7_1:+61606404 Msa1028560:CDS
ATTAATGGTGGTGGTGGGTT+TGG 0.274937 7_1:-61606241 None:intergenic
GGTGATGGTATATTCATTAA+TGG 0.285795 7_1:-61606256 None:intergenic
CACCACAATGCTAGTATCTT+TGG 0.301892 7_1:-61609686 None:intergenic
GTGGTGGGTTTGGTGGGTCT+TGG 0.304953 7_1:-61606231 None:intergenic
GGTTATCGTTGGAGGAAATA+TGG 0.317694 7_1:+61606649 Msa1028560:CDS
AACAACAATAACTTGCTTGT+TGG 0.348151 7_1:+61606403 Msa1028560:CDS
GAAACAAGTTAGAGGAGAAA+AGG 0.356863 7_1:+61606542 Msa1028560:CDS
TTAGAGGAGAAAAGGGTTAG+AGG 0.362096 7_1:+61606550 Msa1028560:CDS
CATTGTGGTGACTACTTATG+AGG 0.394639 7_1:+61609699 Msa1028560:CDS
AGAAAAGGGAAACAAGTTAG+AGG 0.399768 7_1:+61606534 Msa1028560:CDS
TTCTTTACAAAACTACCCTT+TGG 0.400016 7_1:+61606324 Msa1028560:CDS
TCAACTACATGAAGAAGAAA+AGG 0.419090 7_1:+61606519 Msa1028560:CDS
AAACAAGTTAGAGGAGAAAA+GGG 0.432866 7_1:+61606543 Msa1028560:CDS
ATATTCATTAATGGTGGTGG+TGG 0.437732 7_1:-61606247 None:intergenic
TAAAGAAGGTGTAAAGAAGA+AGG 0.451312 7_1:-61606308 None:intergenic
ATGGTGGTGGTGGGTTTGGT+GGG 0.457794 7_1:-61606237 None:intergenic
TGGATGATGGTTATCGTTGG+AGG 0.458848 7_1:+61606641 Msa1028560:CDS
AATGGTGGTGGTGGGTTTGG+TGG 0.469202 7_1:-61606238 None:intergenic
GTAATTCAAAATAATGAAAG+TGG 0.470864 7_1:+61606490 Msa1028560:CDS
AAAGAAGGTGTAAAGAAGAA+GGG 0.479028 7_1:-61606307 None:intergenic
AGGAGAAAAGGGTTAGAGGT+GGG 0.487742 7_1:+61606554 Msa1028560:CDS
CACATGCAACGTGAAGAAAC+AGG 0.504608 7_1:+61609651 Msa1028560:CDS
AACTGTATTTGCTTTAGAAG+AGG 0.505645 7_1:-61609766 None:intergenic
CTTGCTTGTTGGGGATGCTA+AGG 0.508570 7_1:+61606414 Msa1028560:CDS
CAACTACATGAAGAAGAAAA+GGG 0.514940 7_1:+61606520 Msa1028560:CDS
GTTTCCATCAGCTTCTCGCA+TGG 0.515796 7_1:-61609736 None:intergenic
GAATCTCAAGATCAAAGCCT+TGG 0.520588 7_1:+61606346 Msa1028560:CDS
TTTCCATCAGCTTCTCGCAT+GGG 0.522203 7_1:-61609735 None:intergenic
TATTCATTAATGGTGGTGGT+GGG 0.530475 7_1:-61606246 None:intergenic
GAGGAGAAAAGGGTTAGAGG+TGG 0.538687 7_1:+61606553 Msa1028560:CDS
CAACAATAACTTGCTTGTTG+GGG 0.541537 7_1:+61606405 Msa1028560:CDS
AAGAAGGTGTAAAGAAGAAG+GGG 0.545916 7_1:-61606306 None:intergenic
CCATCAGCTTCTCGCATGGG+TGG 0.547684 7_1:-61609732 None:intergenic
GGTATATTCATTAATGGTGG+TGG 0.558354 7_1:-61606250 None:intergenic
CTTGTCTGAAATGCAAACCT+TGG 0.566555 7_1:-61606601 None:intergenic
TTTGATCTTGAGATTCCAAA+GGG 0.568823 7_1:-61606339 None:intergenic
TCAAGAACAGCAAGTATCCC+AGG 0.569780 7_1:+61606683 Msa1028560:CDS
CCACCCATGCGAGAAGCTGA+TGG 0.580190 7_1:+61609732 Msa1028560:CDS
CTTTGATCTTGAGATTCCAA+AGG 0.583271 7_1:-61606340 None:intergenic
AAGCCTTGGTGATATTGAGT+GGG 0.589628 7_1:+61606360 Msa1028560:CDS
ATTGTGGTGACTACTTATGA+GGG 0.595440 7_1:+61609700 Msa1028560:CDS
ACGTGAAGAAACAGGTGCAA+AGG 0.603852 7_1:+61609659 Msa1028560:CDS
AAAGCCTTGGTGATATTGAG+TGG 0.605169 7_1:+61606359 Msa1028560:CDS
TAATTCAAAATAATGAAAGT+GGG 0.605922 7_1:+61606491 Msa1028560:CDS
TTCCAAAGATACTAGCATTG+TGG 0.630354 7_1:+61609684 Msa1028560:CDS
GATGGTATATTCATTAATGG+TGG 0.631790 7_1:-61606253 None:intergenic
AAAAGACAACAAAAGTGCCA+AGG 0.641958 7_1:+61606584 Msa1028560:CDS
AGCCTTGGTGATATTGAGTG+GGG 0.682949 7_1:+61606361 Msa1028560:CDS
TTCCCCACTCAATATCACCA+AGG 0.695459 7_1:-61606363 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATCTTTACAAAAATAAA+TGG + chr7_1:61606918-61606937 Msa1028560:intron 10.0%
!! ATAATCTTTACAAAAATAAA+TGG + chr7_1:61607185-61607204 Msa1028560:intron 10.0%
!!! TTTAAAATAATTAACTTCAT+TGG - chr7_1:61607810-61607829 None:intergenic 10.0%
!! ATACTAATTAAATTCTTTAT+TGG + chr7_1:61608167-61608186 Msa1028560:intron 10.0%
!! ATTAAACATAAAAAATGATA+GGG + chr7_1:61608243-61608262 Msa1028560:intron 10.0%
!!! TAAATTTTTTAAAATGACAA+AGG - chr7_1:61608534-61608553 None:intergenic 10.0%
!!! GAATTAAATATGATTTTTTT+TGG - chr7_1:61608689-61608708 None:intergenic 10.0%
!!! TTTAATCACTTAATTTTAAT+AGG - chr7_1:61608880-61608899 None:intergenic 10.0%
!! TAATTCAAAATAATGAAAGT+GGG + chr7_1:61606491-61606510 Msa1028560:CDS 15.0%
!! TTAGAAGAATAAATTTAGAA+GGG - chr7_1:61607377-61607396 None:intergenic 15.0%
!! TTTAGAAGAATAAATTTAGA+AGG - chr7_1:61607378-61607397 None:intergenic 15.0%
!! TGTTTGATAAAATTAAATGT+TGG - chr7_1:61607627-61607646 None:intergenic 15.0%
!! AAAGACAAATACTTTATATA+AGG + chr7_1:61607909-61607928 Msa1028560:intron 15.0%
!! AAGACAAATACTTTATATAA+GGG + chr7_1:61607910-61607929 Msa1028560:intron 15.0%
!! GATTAAACATAAAAAATGAT+AGG + chr7_1:61608242-61608261 Msa1028560:intron 15.0%
!! AAGATAAAATTAACAAAATC+TGG - chr7_1:61608508-61608527 None:intergenic 15.0%
!! TACAAAAATTTAAGAGTTTA+AGG + chr7_1:61608783-61608802 Msa1028560:intron 15.0%
!!! AGAAGTATTTTTTTTTTTGT+AGG + chr7_1:61608844-61608863 Msa1028560:intron 15.0%
!!! GAAGTATTTTTTTTTTTGTA+GGG + chr7_1:61608845-61608864 Msa1028560:intron 15.0%
!!! TTTCCCTTTATAAATTTTAA+CGG + chr7_1:61609338-61609357 Msa1028560:intron 15.0%
!! GTAATTCAAAATAATGAAAG+TGG + chr7_1:61606490-61606509 Msa1028560:CDS 20.0%
!!! TTTGTTAAGTTTGAAATTGA+GGG - chr7_1:61606774-61606793 None:intergenic 20.0%
!!! TTTTGTTAAGTTTGAAATTG+AGG - chr7_1:61606775-61606794 None:intergenic 20.0%
!! AGATGTATATTACATTTCTA+AGG + chr7_1:61606844-61606863 Msa1028560:intron 20.0%
!! ATCTTTACAAAAATAAATGG+AGG + chr7_1:61606921-61606940 Msa1028560:intron 20.0%
!! TCTTTACAAAAATAAATGGA+GGG + chr7_1:61606922-61606941 Msa1028560:intron 20.0%
!!! TACAATTTTAGAGAAGAAAT+TGG - chr7_1:61607043-61607062 None:intergenic 20.0%
!!! AATTTCTTCTCTAAAATTGT+AGG + chr7_1:61607042-61607061 Msa1028560:intron 20.0%
!! GTAAAGATTATAAATGACAA+TGG - chr7_1:61607176-61607195 None:intergenic 20.0%
!! ATCTTTACAAAAATAAATGG+AGG + chr7_1:61606921-61606940 Msa1028560:intron 20.0%
!! TCTTTACAAAAATAAATGGA+GGG + chr7_1:61606922-61606941 Msa1028560:intron 20.0%
!!! ATTATTTTAGATCAAGATAC+AGG - chr7_1:61607401-61607420 None:intergenic 20.0%
!! TAATAAACTTTCCATTTGTT+TGG + chr7_1:61607487-61607506 Msa1028560:intron 20.0%
!!! GTTTAATTTAAGTAGGTTAA+AGG + chr7_1:61607576-61607595 Msa1028560:intron 20.0%
!! CCTTAGTTTAAAAAATATTG+TGG - chr7_1:61607728-61607747 None:intergenic 20.0%
!!! CCACAATATTTTTTAAACTA+AGG + chr7_1:61607725-61607744 Msa1028560:intron 20.0%
!!! GTGTTTTCATATTCATTAAT+TGG + chr7_1:61608091-61608110 Msa1028560:intron 20.0%
!! AGTAATGACTAAACTTAAAA+AGG - chr7_1:61608302-61608321 None:intergenic 20.0%
!!! TGAGTGCATAAATTTTTTTA+GGG - chr7_1:61608347-61608366 None:intergenic 20.0%
!! AATTAAACAAATTTGAACTG+AGG - chr7_1:61608382-61608401 None:intergenic 20.0%
!!! GATATTACATTTTATATGCA+GGG + chr7_1:61608589-61608608 Msa1028560:intron 20.0%
!!! ATATTACATTTTATATGCAG+GGG + chr7_1:61608590-61608609 Msa1028560:intron 20.0%
!!! CATAAATGTCATATCATTTT+GGG - chr7_1:61608945-61608964 None:intergenic 20.0%
!!! TCATAAATGTCATATCATTT+TGG - chr7_1:61608946-61608965 None:intergenic 20.0%
!!! TTCCCTTTATAAATTTTAAC+GGG + chr7_1:61609339-61609358 Msa1028560:intron 20.0%
!!! AAATGATCAATATCTCTTTT+AGG + chr7_1:61609423-61609442 Msa1028560:intron 20.0%
!!! TTTTACCAATGCAAATTTTA+TGG - chr7_1:61609600-61609619 None:intergenic 20.0%
!!! AAGAAGTGTTGATGATATTT+TGG + chr7_1:61606621-61606640 Msa1028560:CDS 25.0%
! ATGTTTGTGAAATCATCATT+TGG + chr7_1:61606720-61606739 Msa1028560:intron 25.0%
!!! TATTTTGTTTGCCAAACAAA+TGG - chr7_1:61607501-61607520 None:intergenic 25.0%
! GCTCGTATAAAAGATTAATT+TGG + chr7_1:61607534-61607553 Msa1028560:intron 25.0%
!!! AATTTGGTAACCATCATTTT+CGG + chr7_1:61607550-61607569 Msa1028560:intron 25.0%
! ATTAAACTTACCGAAAATGA+TGG - chr7_1:61607563-61607582 None:intergenic 25.0%
!! TCGGTAAGTTTAATTTAAGT+AGG + chr7_1:61607569-61607588 Msa1028560:intron 25.0%
!! ATTATTTGCTACCTTTATTG+AGG + chr7_1:61607976-61607995 Msa1028560:intron 25.0%
! CTAATTAAACTCCTCAATAA+AGG - chr7_1:61607990-61608009 None:intergenic 25.0%
!! TATTTTACACATGCATTCAA+TGG + chr7_1:61608031-61608050 Msa1028560:intron 25.0%
!! TTTTTGCTCCCTATAAAATT+GGG + chr7_1:61608275-61608294 Msa1028560:intron 25.0%
!! AAAAAGGTCCCAATTTTATA+GGG - chr7_1:61608286-61608305 None:intergenic 25.0%
!! TAAAAAGGTCCCAATTTTAT+AGG - chr7_1:61608287-61608306 None:intergenic 25.0%
!!! CTGAGTGCATAAATTTTTTT+AGG - chr7_1:61608348-61608367 None:intergenic 25.0%
!! GGATATTACATTTTATATGC+AGG + chr7_1:61608588-61608607 Msa1028560:intron 25.0%
!! CAAGTTTAGAATACTATGAA+AGG - chr7_1:61608749-61608768 None:intergenic 25.0%
!! TTAGAAGTTCCCAATTTTAT+AGG + chr7_1:61608901-61608920 Msa1028560:intron 25.0%
!! TAGAAGTTCCCAATTTTATA+GGG + chr7_1:61608902-61608921 Msa1028560:intron 25.0%
!!! TTTTTGGTCCCTATAAAATT+GGG - chr7_1:61608913-61608932 None:intergenic 25.0%
!!! TTTTGGGTTAAATGTGTTTT+TGG - chr7_1:61608929-61608948 None:intergenic 25.0%
! GACATTTATGATTGAATGAT+TGG + chr7_1:61608955-61608974 Msa1028560:intron 25.0%
!! CTTAGAGAAAGAGTATAATT+TGG - chr7_1:61609024-61609043 None:intergenic 25.0%
! ACAAGTTTAGAAACTAAACA+TGG - chr7_1:61609296-61609315 None:intergenic 25.0%
!!! TCCCTTTATAAATTTTAACG+GGG + chr7_1:61609340-61609359 Msa1028560:intron 25.0%
! TCCCCGTTAAAATTTATAAA+GGG - chr7_1:61609344-61609363 None:intergenic 25.0%
! AGTGAAACTAAGAGAAAAAT+AGG + chr7_1:61609369-61609388 Msa1028560:intron 25.0%
! GTGAAACTAAGAGAAAAATA+GGG + chr7_1:61609370-61609389 Msa1028560:intron 25.0%
! TTGATCCATAAAATTTGCAT+TGG + chr7_1:61609592-61609611 Msa1028560:intron 25.0%
GATGGTATATTCATTAATGG+TGG - chr7_1:61606256-61606275 None:intergenic 30.0%
! GGTGATGGTATATTCATTAA+TGG - chr7_1:61606259-61606278 None:intergenic 30.0%
! AAAGAAGGTGTAAAGAAGAA+GGG - chr7_1:61606310-61606329 None:intergenic 30.0%
! TAAAGAAGGTGTAAAGAAGA+AGG - chr7_1:61606311-61606330 None:intergenic 30.0%
!!! AAAGGGTAGTTTTGTAAAGA+AGG - chr7_1:61606325-61606344 None:intergenic 30.0%
TTCTTTACAAAACTACCCTT+TGG + chr7_1:61606324-61606343 Msa1028560:CDS 30.0%
TTTGATCTTGAGATTCCAAA+GGG - chr7_1:61606342-61606361 None:intergenic 30.0%
!! AACAACAATAACTTGCTTGT+TGG + chr7_1:61606403-61606422 Msa1028560:CDS 30.0%
!! ACAACAATAACTTGCTTGTT+GGG + chr7_1:61606404-61606423 Msa1028560:CDS 30.0%
CACTTCATCTTCTTCTAATT+TGG + chr7_1:61606468-61606487 Msa1028560:CDS 30.0%
TCAACTACATGAAGAAGAAA+AGG + chr7_1:61606519-61606538 Msa1028560:CDS 30.0%
CAACTACATGAAGAAGAAAA+GGG + chr7_1:61606520-61606539 Msa1028560:CDS 30.0%
AAACAAGTTAGAGGAGAAAA+GGG + chr7_1:61606543-61606562 Msa1028560:CDS 30.0%
!!! GTTGATGATATTTTGGATGA+TGG + chr7_1:61606628-61606647 Msa1028560:CDS 30.0%
CATACATGTAGTATATACCT+GGG - chr7_1:61606703-61606722 None:intergenic 30.0%
ACATACATGTAGTATATACC+TGG - chr7_1:61606704-61606723 None:intergenic 30.0%
!! GACGATTTTGATAAATGTCT+TGG + chr7_1:61607211-61607230 Msa1028560:intron 30.0%
ATTGGTTAGCAATACTCTAT+CGG + chr7_1:61608185-61608204 Msa1028560:intron 30.0%
! GTTTTTGCTCCCTATAAAAT+TGG + chr7_1:61608274-61608293 Msa1028560:intron 30.0%
AAACAAATTTGAACTGAGGA+GGG - chr7_1:61608378-61608397 None:intergenic 30.0%
TAAACAAATTTGAACTGAGG+AGG - chr7_1:61608379-61608398 None:intergenic 30.0%
!!! TTTGCGATAATTTTTTGCAG+AGG - chr7_1:61608470-61608489 None:intergenic 30.0%
GAGCATACACAATTAAATTG+TGG - chr7_1:61608647-61608666 None:intergenic 30.0%
!!! GTTTTTGGTCCCTATAAAAT+TGG - chr7_1:61608914-61608933 None:intergenic 30.0%
AGTATCTATACAAAACTCCA+CGG + chr7_1:61608982-61609001 Msa1028560:intron 30.0%
AGAGATGTAGAAAATAGTGA+TGG - chr7_1:61609089-61609108 None:intergenic 30.0%
TCTCCTCGATAGTTTATAAA+TGG + chr7_1:61609139-61609158 Msa1028560:intron 30.0%
CTCCTCGATAGTTTATAAAT+GGG + chr7_1:61609140-61609159 Msa1028560:intron 30.0%
ACAAGTTAAGGAGCTAAAAA+GGG + chr7_1:61609188-61609207 Msa1028560:intron 30.0%
CTCCCCGTTAAAATTTATAA+AGG - chr7_1:61609345-61609364 None:intergenic 30.0%
!! TTGATCATTTTTCACGAGTT+TGG - chr7_1:61609413-61609432 None:intergenic 30.0%
!! AACTGTATTTGCTTTAGAAG+AGG - chr7_1:61609769-61609788 None:intergenic 30.0%
!! TATTCATTAATGGTGGTGGT+GGG - chr7_1:61606249-61606268 None:intergenic 35.0%
!! ATATTCATTAATGGTGGTGG+TGG - chr7_1:61606250-61606269 None:intergenic 35.0%
GGTATATTCATTAATGGTGG+TGG - chr7_1:61606253-61606272 None:intergenic 35.0%
!!! TTGTTTTGAGTTTGTGGTGA+TGG - chr7_1:61606274-61606293 None:intergenic 35.0%
!!! GTGTTGTTGTTTTGAGTTTG+TGG - chr7_1:61606280-61606299 None:intergenic 35.0%
! AAGAAGGTGTAAAGAAGAAG+GGG - chr7_1:61606309-61606328 None:intergenic 35.0%
CTTTGATCTTGAGATTCCAA+AGG - chr7_1:61606343-61606362 None:intergenic 35.0%
!! CAACAATAACTTGCTTGTTG+GGG + chr7_1:61606405-61606424 Msa1028560:CDS 35.0%
AGAAAAGGGAAACAAGTTAG+AGG + chr7_1:61606534-61606553 Msa1028560:CDS 35.0%
GAAACAAGTTAGAGGAGAAA+AGG + chr7_1:61606542-61606561 Msa1028560:CDS 35.0%
!! AAAAGACAACAAAAGTGCCA+AGG + chr7_1:61606584-61606603 Msa1028560:CDS 35.0%
!! TTTTGGATGATGGTTATCGT+TGG + chr7_1:61606638-61606657 Msa1028560:CDS 35.0%
!! CTTCTCTAAAATTGTAGGAC+TGG + chr7_1:61607047-61607066 Msa1028560:intron 35.0%
TTGGTGTGACAGTATATCAT+TGG + chr7_1:61608110-61608129 Msa1028560:intron 35.0%
TACCAACTGAACTAAGCTTA+CGG - chr7_1:61608567-61608586 None:intergenic 35.0%
! TAAGCTTAGTTCAGTTGGTA+GGG + chr7_1:61608567-61608586 Msa1028560:intron 35.0%
! TGTAGAAAATAGTGATGGAG+AGG - chr7_1:61609084-61609103 None:intergenic 35.0%
GACCCATTTATAAACTATCG+AGG - chr7_1:61609145-61609164 None:intergenic 35.0%
CACAAGTTAAGGAGCTAAAA+AGG + chr7_1:61609187-61609206 Msa1028560:intron 35.0%
TTTCTAAACTTGTGCCTCAA+GGG + chr7_1:61609303-61609322 Msa1028560:intron 35.0%
CAACATCGAAGACTGAAAAA+GGG - chr7_1:61609496-61609515 None:intergenic 35.0%
!! TTTTTCAGTCTTCGATGTTG+CGG + chr7_1:61609496-61609515 Msa1028560:intron 35.0%
TTCCAAAGATACTAGCATTG+TGG + chr7_1:61609684-61609703 Msa1028560:CDS 35.0%
ATTGTGGTGACTACTTATGA+GGG + chr7_1:61609700-61609719 Msa1028560:CDS 35.0%
GAATCTCAAGATCAAAGCCT+TGG + chr7_1:61606346-61606365 Msa1028560:CDS 40.0%
! AAAGCCTTGGTGATATTGAG+TGG + chr7_1:61606359-61606378 Msa1028560:CDS 40.0%
! AAGCCTTGGTGATATTGAGT+GGG + chr7_1:61606360-61606379 Msa1028560:CDS 40.0%
!! GAGTGGGGAAACTTTTTCTT+AGG + chr7_1:61606376-61606395 Msa1028560:CDS 40.0%
TTAGAGGAGAAAAGGGTTAG+AGG + chr7_1:61606550-61606569 Msa1028560:CDS 40.0%
! CTTGTCTGAAATGCAAACCT+TGG - chr7_1:61606604-61606623 None:intergenic 40.0%
GGTTATCGTTGGAGGAAATA+TGG + chr7_1:61606649-61606668 Msa1028560:CDS 40.0%
ACCAACTGAACTAAGCTTAC+GGG - chr7_1:61608566-61608585 None:intergenic 40.0%
GTAAGCTTAGTTCAGTTGGT+AGG + chr7_1:61608566-61608585 Msa1028560:intron 40.0%
! TACATTTTATATGCAGGGGC+CGG + chr7_1:61608594-61608613 Msa1028560:intron 40.0%
!! TTTTTGGTCAAGTAGCCTAG+TGG - chr7_1:61608673-61608692 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG + chr7_1:61609163-61609182 Msa1028560:intron 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG + chr7_1:61609164-61609183 Msa1028560:intron 40.0%
GTTTCTAAACTTGTGCCTCA+AGG + chr7_1:61609302-61609321 Msa1028560:intron 40.0%
!! AATGTTAACTTGTGCCCTTG+AGG - chr7_1:61609320-61609339 None:intergenic 40.0%
GCAACATCGAAGACTGAAAA+AGG - chr7_1:61609497-61609516 None:intergenic 40.0%
!! AGTTGTTGACTTCCTCTCTT+TGG + chr7_1:61609539-61609558 Msa1028560:intron 40.0%
ACTTCCTCTCTTTGGTTGAT+TGG + chr7_1:61609547-61609566 Msa1028560:intron 40.0%
CTTCCTCTCTTTGGTTGATT+GGG + chr7_1:61609548-61609567 Msa1028560:intron 40.0%
CACCACAATGCTAGTATCTT+TGG - chr7_1:61609689-61609708 None:intergenic 40.0%
CATTGTGGTGACTACTTATG+AGG + chr7_1:61609699-61609718 Msa1028560:CDS 40.0%
!! ATTAATGGTGGTGGTGGGTT+TGG - chr7_1:61606244-61606263 None:intergenic 45.0%
! AGCCTTGGTGATATTGAGTG+GGG + chr7_1:61606361-61606380 Msa1028560:CDS 45.0%
TTCCCCACTCAATATCACCA+AGG - chr7_1:61606366-61606385 None:intergenic 45.0%
AGGAGAAAAGGGTTAGAGGT+GGG + chr7_1:61606554-61606573 Msa1028560:CDS 45.0%
! TGGATGATGGTTATCGTTGG+AGG + chr7_1:61606641-61606660 Msa1028560:CDS 45.0%
TCAAGAACAGCAAGTATCCC+AGG + chr7_1:61606683-61606702 Msa1028560:CDS 45.0%
CCAACTGAACTAAGCTTACG+GGG - chr7_1:61608565-61608584 None:intergenic 45.0%
! ACATTTTATATGCAGGGGCC+GGG + chr7_1:61608595-61608614 Msa1028560:intron 45.0%
! TGTGGAGAAGTAGAGTGTCA+GGG - chr7_1:61608629-61608648 None:intergenic 45.0%
! TTGTGGAGAAGTAGAGTGTC+AGG - chr7_1:61608630-61608649 None:intergenic 45.0%
TTGTGTATGCTCTAGCCACT+AGG + chr7_1:61608655-61608674 Msa1028560:intron 45.0%
GAGATAACACTAAGCTACCG+TGG - chr7_1:61609002-61609021 None:intergenic 45.0%
!! CTCCTTAACTTGTGCCCTTA+GGG - chr7_1:61609181-61609200 None:intergenic 45.0%
GATCCCAATCAACCAAAGAG+AGG - chr7_1:61609554-61609573 None:intergenic 45.0%
CACATGCAACGTGAAGAAAC+AGG + chr7_1:61609651-61609670 Msa1028560:CDS 45.0%
ACGTGAAGAAACAGGTGCAA+AGG + chr7_1:61609659-61609678 Msa1028560:CDS 45.0%
TTTCCATCAGCTTCTCGCAT+GGG - chr7_1:61609738-61609757 None:intergenic 45.0%
! CTTGCTTGTTGGGGATGCTA+AGG + chr7_1:61606414-61606433 Msa1028560:CDS 50.0%
GAGGAGAAAAGGGTTAGAGG+TGG + chr7_1:61606553-61606572 Msa1028560:CDS 50.0%
CCCCGTAAGCTTAGTTCAGT+TGG + chr7_1:61608562-61608581 Msa1028560:intron 50.0%
! CATTTTATATGCAGGGGCCG+GGG + chr7_1:61608596-61608615 Msa1028560:intron 50.0%
! GTGGAGAAGTAGAGTGTCAG+GGG - chr7_1:61608628-61608647 None:intergenic 50.0%
! TGCCCTAAGGGCACAAGTTA+AGG + chr7_1:61609176-61609195 Msa1028560:intron 50.0%
!! GCTCCTTAACTTGTGCCCTT+AGG - chr7_1:61609182-61609201 None:intergenic 50.0%
GTTTCCATCAGCTTCTCGCA+TGG - chr7_1:61609739-61609758 None:intergenic 50.0%
!! ATGGTGGTGGTGGGTTTGGT+GGG - chr7_1:61606240-61606259 None:intergenic 55.0%
!! AATGGTGGTGGTGGGTTTGG+TGG - chr7_1:61606241-61606260 None:intergenic 55.0%
!! GTGGTGGGTTTGGTGGGTCT+TGG - chr7_1:61606234-61606253 None:intergenic 60.0%
AGTGTCAGGGGTTCGAACCC+CGG - chr7_1:61608616-61608635 None:intergenic 60.0%
CCATCAGCTTCTCGCATGGG+TGG - chr7_1:61609735-61609754 None:intergenic 60.0%
CCACCCATGCGAGAAGCTGA+TGG + chr7_1:61609732-61609751 Msa1028560:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 61606223 61609804 61606223 ID=Msa1028560;Name=Msa1028560
chr7_1 mRNA 61606223 61609804 61606223 ID=Msa1028560-mRNA-1;Parent=Msa1028560;Name=Msa1028560-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0|1|0|0.5|2|0|219
chr7_1 exon 61606223 61606704 61606223 ID=Msa1028560-mRNA-1:exon:12959;Parent=Msa1028560-mRNA-1
chr7_1 exon 61609627 61609804 61609627 ID=Msa1028560-mRNA-1:exon:12960;Parent=Msa1028560-mRNA-1
chr7_1 CDS 61606223 61606704 61606223 ID=Msa1028560-mRNA-1:cds;Parent=Msa1028560-mRNA-1
chr7_1 CDS 61609627 61609804 61609627 ID=Msa1028560-mRNA-1:cds;Parent=Msa1028560-mRNA-1
Gene Sequence

>Msa1028560

ATGGATAGCCAAGACCCACCAAACCCACCACCACCATTAATGAATATACCATCACCACAAACTCAAAACAACAACACTTCTCTCCCCTTCTTCTTTACACCTTCTTTACAAAACTACCCTTTGGAATCTCAAGATCAAAGCCTTGGTGATATTGAGTGGGGAAACTTTTTCTTAGGTCAAAACAACAATAACTTGCTTGTTGGGGATGCTAAGGAGACATTAAAGATTGACAATATTCAACAATGCACTTCATCTTCTTCTAATTTGGTAATTCAAAATAATGAAAGTGGGAGTTATCAACTACATGAAGAAGAAAAGGGAAACAAGTTAGAGGAGAAAAGGGTTAGAGGTGGGAGAGTGAAAAAGACAACAAAAGTGCCAAGGTTTGCATTTCAGACAAGAAGTGTTGATGATATTTTGGATGATGGTTATCGTTGGAGGAAATATGGACAAAAAGCTGTCAAGAACAGCAAGTATCCCAGAAGCTACTATCGATGCACACATCACACATGCAACGTGAAGAAACAGGTGCAAAGGCTTTCCAAAGATACTAGCATTGTGGTGACTACTTATGAGGGAATTCACAACCACCCATGCGAGAAGCTGATGGAAACTCTAACTCCTCTTCTAAAGCAAATACAGTTTCTTGCTAGCTTGTAA
Protein sequence

>Msa1028560

MDSQDPPNPPPPLMNIPSPQTQNNNTSLPFFFTPSLQNYPLESQDQSLGDIEWGNFFLGQNNNNLLVGDAKETLKIDNIQQCTSSSSNLVIQNNESGSYQLHEEEKGNKLEEKRVRGGRVKKTTKVPRFAFQTRSVDDILDDGYRWRKYGQKAVKNSKYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQIQFLASL*