AlfalfaGEDB | Msa1028770

M. sativa cultivar zhongmu-4 / Msa1028770

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028770	XP_003624126.1	91.525	649	19	2	1	649	1	613	0.0	1213

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028770	G7KQL6	91.525	649	19	2	1	649	1	613	0.0	1213

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1028770	Msa1067900	0.803788	2.949373e-49	-8.615850e-47
Msa1028770	Msa1395590	0.807488	4.932097e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028770	MtrunA17_Chr7g0249061	91.525	649	19	2	1	649	1	613	0.0	1213

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028770	AT5G16520.1	53.798	645	234	9	1	635	1	591	0.0	695
Msa1028770	AT5G16520.2	64.474	456	145	2	1	455	1	440	0.0	638

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Find 148 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTCTAACTTAATGA+TGG	0.436507	7_1:-61958884	None:intergenic
AAAAGGGAGCTTGTTGTGAT+GGG	0.519618	7_1:+61962788	Msa1028770:CDS
AAACGCAAAACTGAACTTGG+TGG	0.565313	7_1:+61960544	Msa1028770:CDS
AAATATGTAAAGTTTACATA+TGG	0.498234	7_1:+61962727	Msa1028770:CDS
AACATAGTTTCTGGAAATCC+GGG	0.507772	7_1:+61960886	Msa1028770:CDS
AACCTCATTTCTGAATGACA+TGG	0.633930	7_1:+61960807	Msa1028770:CDS
AACGATGCTTGTAAAATTCA+TGG	0.301107	7_1:-61964290	None:intergenic
AAGCTGCCAGAGACACTTCC+TGG	0.334787	7_1:+61959098	Msa1028770:CDS
AATAGTCCCGCTACTGCTGT+TGG	0.568021	7_1:+61961060	Msa1028770:CDS
ACAATAGCACTCAAGTGTAA+AGG	0.559783	7_1:+61960982	Msa1028770:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATTGAAAAGAAAATCTGAG+AGG	-	chr7_1:61958931-61958950	None:intergenic	30.0%
TTGTAGGTGATTGAATTTGA+AGG	-	chr7_1:61958960-61958979	None:intergenic	30.0%
TCAAATTCAATCACCTACAA+TGG	+	chr7_1:61958960-61958979	Msa1028770:CDS	30.0%
TCAAATATTACCACAGATAC+TGG	+	chr7_1:61959056-61959075	Msa1028770:CDS	30.0%
TTCTTAAGAGAATCAAATCC+AGG	-	chr7_1:61959119-61959138	None:intergenic	30.0%
GTTTCTCTTATAAATAGGAC+CGG	-	chr7_1:61959999-61960018	None:intergenic	30.0%
CCCAAGTTTCTCTTATAAAT+AGG	-	chr7_1:61960004-61960023	None:intergenic	30.0%
ATATCGAACATAGAGATTCA+GGG	-	chr7_1:61960136-61960155	None:intergenic	30.0%
TGACTCATGAAATCAAAGAA+AGG	-	chr7_1:61960169-61960188	None:intergenic	30.0%
CTCATTAATATATCCTGACA+AGG	-	chr7_1:61960632-61960651	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	61958608	61964764	61958608	ID=Msa1028770;Name=Msa1028770
chr7_1	mRNA	61958608	61964764	61958608	ID=Msa1028770-mRNA-1;Parent=Msa1028770;Name=Msa1028770-mRNA-1;_AED=0.06;_eAED=0.08;_QI=340\|0.71\|0.75\|1\|1\|1\|8\|512\|649
chr7_1	exon	61958608	61959313	61958608	ID=Msa1028770-mRNA-1:exon:13063;Parent=Msa1028770-mRNA-1
chr7_1	exon	61960523	61960614	61960523	ID=Msa1028770-mRNA-1:exon:13064;Parent=Msa1028770-mRNA-1
chr7_1	exon	61960735	61961432	61960735	ID=Msa1028770-mRNA-1:exon:13065;Parent=Msa1028770-mRNA-1
chr7_1	exon	61962253	61962371	61962253	ID=Msa1028770-mRNA-1:exon:13066;Parent=Msa1028770-mRNA-1
chr7_1	exon	61962486	61962575	61962486	ID=Msa1028770-mRNA-1:exon:13067;Parent=Msa1028770-mRNA-1
chr7_1	exon	61962661	61962918	61962661	ID=Msa1028770-mRNA-1:exon:13068;Parent=Msa1028770-mRNA-1
chr7_1	exon	61963154	61963316	61963154	ID=Msa1028770-mRNA-1:exon:13069;Parent=Msa1028770-mRNA-1
chr7_1	exon	61964089	61964764	61964089	ID=Msa1028770-mRNA-1:exon:13070;Parent=Msa1028770-mRNA-1
chr7_1	five_prime_UTR	61958608	61958947	61958608	ID=Msa1028770-mRNA-1:five_prime_utr;Parent=Msa1028770-mRNA-1
chr7_1	CDS	61958948	61959313	61958948	ID=Msa1028770-mRNA-1:cds;Parent=Msa1028770-mRNA-1
chr7_1	CDS	61960523	61960614	61960523	ID=Msa1028770-mRNA-1:cds;Parent=Msa1028770-mRNA-1
chr7_1	CDS	61960735	61961432	61960735	ID=Msa1028770-mRNA-1:cds;Parent=Msa1028770-mRNA-1
chr7_1	CDS	61962253	61962371	61962253	ID=Msa1028770-mRNA-1:cds;Parent=Msa1028770-mRNA-1
chr7_1	CDS	61962486	61962575	61962486	ID=Msa1028770-mRNA-1:cds;Parent=Msa1028770-mRNA-1
chr7_1	CDS	61962661	61962918	61962661	ID=Msa1028770-mRNA-1:cds;Parent=Msa1028770-mRNA-1
chr7_1	CDS	61963154	61963316	61963154	ID=Msa1028770-mRNA-1:cds;Parent=Msa1028770-mRNA-1
chr7_1	CDS	61964089	61964252	61964089	ID=Msa1028770-mRNA-1:cds;Parent=Msa1028770-mRNA-1
chr7_1	three_prime_UTR	61964253	61964764	61964253	ID=Msa1028770-mRNA-1:three_prime_utr;Parent=Msa1028770-mRNA-1

Gene Sequence

>Msa1028770

ATGGCTTGTCCTTCAAATTCAATCACCTACAATGGCACCCTTTGTGCTTGTTTACCAGGACATGTTCTTGATGTCGTGGCTAAGAGTTGCAAACTCTTTGAAGCTGACTCAAATATTACCACAGATACTGGTGTTGATTACTATGCTCTTAAGCTGCCAGAGACACTTCCTGGATTTGATTCTCTTAAGAAGTTTACACAGTCACAAGCTGTGTTCTTGGAGGCTACACTTGTCATGCTTCTCTCTTGGCTTTTGTTTTGCTTATTTCTTAGGTTTATGAGCCTTGGTGATGGTCGTGGCGTGTGGTTTAAACTTAGGTGGTTTGTTAGTCGATTGGATATTTGTTTTGCTACTAGACATTGGCTGGACGATAAGAAAGTAGTAACCAAACGCAAAACTGAACTTGGTGGAGCTTTCTCCATAGCAAGTTGGATACTTTTCATTGGTTTATTTGCTGCGTTGCTATACCAGATCATATCAAAGAGATCAATTGAGGTTCATAATATAAGAGCAACAAATGCACCAGAATTAACCTCATTTCTGAATGACATGGAGTTCAATATAACAACTATATCTAGTATGAGCTGTGCAAATCTACGTGATCTCGGTAACATAGTTTCTGGAAATCCGGGATTTATTGACGAAAGAGTTGTTTCTCTGTCAACTTTAGCAAACTACTCTTGTCACAACTCAAGCAAGGGACCAACAATAGCACTCAAGTGTAAAGGTTGCAAGCTCATCTCCGATAACATGTACATTTCATGGCAATTTGTTGATCTCCCAAATAGTCCCGCTACTGCTGTTGGTTATGAATTCAATCTCGCTTCAACGGATAGTGCTAAGAAACACGTGAGTTTTGTTAATGGAACGCTAAAGAATGGAAGCACTTTTGATGATAGACCGGTTACATTTAGAGGGAGGCAATCAAATATTTTGAAGTTCAATCTGTTTCCCCGAATATACCGTAATTTGCACGATCTAAAGCTCATTCAGCCTTTATTTCACGAGTTCCTCCCTGGTTCAGTTTTTCGTGATACAAATCAACTTCGAACGTCCCTTGAAAACTCTGTTGAAGGACTAGTCAACACCACATTGTATATCAATTTTCTCTCTGCTTATGTTGTGGAGGTTGATAAAGAGAGTATTTTGGGTCCTGTTTTTGTGCACACTGTTGATGTTTCACCCTTTTCTGTTTTATCTGCAGTGAGCTTCCTTGCGGACCTTGGTGGCCTGTATTGCATTAGCATAGGCATATTTTTCTATCTATTGATACAGTGTGAATACAGGGTAAAGAAGCTCAGAAATGAGGATAGTGTTTTGCGGTCAATTAAAAATCGGTGTAAAGCTCAAGATAATTGGGATAAAAAGTCAATAATAGGCTTCTTATATGTTGGTTATATGACTGATATTTCTGCTTTTAACCAGCTTAGGAAATATGTAAAGTTTACATATGGCGTTCCTACAATGGATGAAGACAACTATGATGAATCTAAAAAGGGAGCTTGTTGTGATGGGTTTATGTTGCATTCAATACAAAGCAGTGGATCATCACATAAGCGAAGGCAGCAAAGCAAAACAAGTTCTATAAATTTGTACGAGAAACCGAGTTTACCTGCCAACAAGTCATTGATCAGCAAACCGCTTGGATCTACGAATGATTCGACACTGCATTATGAAAATACGGCAAAGCAGCATAGTGTTGGTTCAAGCAGAGATTTCCCACCATGTCAACCTCAAGAATCGTCTATTATTGATGATAACTTTATTCCTCCTCCACCTTCACTAGAATGCAAGAGTGGTTCTGAAATGGACATGTCCGATGTTCAGAAGAATCTCAAAAATCTGTACGAGTATAATGCCATGTTAAGGGAAAGATTATTAGCTGCACAGTCTTTGCTCCAATCCTCCTCATCTAACCACTCTTCCAAAATAAAGAGCAATGGAACTTAG

Protein sequence

>Msa1028770

MACPSNSITYNGTLCACLPGHVLDVVAKSCKLFEADSNITTDTGVDYYALKLPETLPGFDSLKKFTQSQAVFLEATLVMLLSWLLFCLFLRFMSLGDGRGVWFKLRWFVSRLDICFATRHWLDDKKVVTKRKTELGGAFSIASWILFIGLFAALLYQIISKRSIEVHNIRATNAPELTSFLNDMEFNITTISSMSCANLRDLGNIVSGNPGFIDERVVSLSTLANYSCHNSSKGPTIALKCKGCKLISDNMYISWQFVDLPNSPATAVGYEFNLASTDSAKKHVSFVNGTLKNGSTFDDRPVTFRGRQSNILKFNLFPRIYRNLHDLKLIQPLFHEFLPGSVFRDTNQLRTSLENSVEGLVNTTLYINFLSAYVVEVDKESILGPVFVHTVDVSPFSVLSAVSFLADLGGLYCISIGIFFYLLIQCEYRVKKLRNEDSVLRSIKNRCKAQDNWDKKSIIGFLYVGYMTDISAFNQLRKYVKFTYGVPTMDEDNYDESKKGACCDGFMLHSIQSSGSSHKRRQQSKTSSINLYEKPSLPANKSLISKPLGSTNDSTLHYENTAKQHSVGSSRDFPPCQPQESSIIDDNFIPPPPSLECKSGSEMDMSDVQKNLKNLYEYNAMLRERLLAAQSLLQSSSSNHSSKIKSNGT*