AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1028930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028930 MtrunA17_Chr7g0249331 97.500 400 10 0 1 400 1 400 0.0 802
Msa1028930 MtrunA17_Chr2g0284641 34.615 260 154 3 70 314 238 496 2.72e-46 166
Msa1028930 MtrunA17_Chr8g0379921 35.938 256 144 4 64 302 228 480 1.70e-44 161
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028930 AT5G16460.1 48.534 307 135 4 15 312 35 327 1.75e-98 298
Msa1028930 AT2G34380.1 31.734 271 165 4 43 302 218 479 6.20e-43 157
Msa1028930 AT1G29760.1 33.203 256 159 3 64 307 257 512 7.88e-41 152

Find 253 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTCCGCAATTGTGTTAA+TGG 0.114954 7_1:-62141993 Msa1028930:five_prime_UTR
TACCATCATTTATTAAAATA+TGG 0.125670 7_1:+62141919 None:intergenic
TCATCAAATATCTTGTATTT+TGG 0.158561 7_1:+62140782 None:intergenic
TTCTCCCATACCTTTCTTAT+TGG 0.164687 7_1:+62142348 None:intergenic
TCTGTCCTTTGTTCTGATTC+TGG 0.165253 7_1:-62139693 Msa1028930:CDS
ACTCTTTAGCCCAAGGTAAA+TGG 0.168110 7_1:+62138423 None:intergenic
TAGAGAGCTTGGGGTGTTTC+AGG 0.185212 7_1:-62139444 Msa1028930:intron
TGCTTCTCTTATATTGTTAC+AGG 0.200122 7_1:-62138334 Msa1028930:CDS
CTCTTCTCTTCTAACATTTC+AGG 0.202321 7_1:+62140492 None:intergenic
GAGTTGGGTTGGTTCGGTTT+TGG 0.211599 7_1:-62139658 Msa1028930:CDS
GCAGGTTCCTTGAAATAAAA+TGG 0.221088 7_1:-62142740 Msa1028930:intron
CTCTTAAGTCTAACTACTTT+TGG 0.221962 7_1:-62141436 Msa1028930:five_prime_UTR
GTATCAGTGCGTTATAAATT+TGG 0.225842 7_1:-62141836 Msa1028930:five_prime_UTR
TGGGCTTCAATGTTGAGTTT+TGG 0.227022 7_1:+62140241 None:intergenic
TGGATCAATGTTTCTTCTAA+TGG 0.244000 7_1:-62141027 Msa1028930:five_prime_UTR
ACCTTTCTTATTGGCTTTCA+TGG 0.257848 7_1:+62142357 None:intergenic
TTGATTAGATATATCTTTAC+TGG 0.264106 7_1:+62140186 None:intergenic
ATATTTAGTTGCTTTGAAAA+TGG 0.273001 7_1:-62138000 Msa1028930:three_prime_UTR
CTGGCTTCTGTGGTGGGAGT+TGG 0.273020 7_1:-62139674 Msa1028930:CDS
AATGGTTGATAAATTGCTTT+TGG 0.274567 7_1:-62137982 Msa1028930:three_prime_UTR
ATGGGAGTTTATAACAATTT+CGG 0.277042 7_1:+62138442 None:intergenic
AAGGCCTATATATTTATTAT+TGG 0.284421 7_1:-62142205 Msa1028930:five_prime_UTR
GAGATTAAGTTGGTGTAAAA+TGG 0.287295 7_1:+62142059 None:intergenic
AATCAGTGTGCATAGGTTAA+AGG 0.288320 7_1:-62138025 Msa1028930:exon
GAGATCAATGGTTGTGATAT+TGG 0.289628 7_1:-62142403 Msa1028930:five_prime_UTR
TATGCCCCATTACGATTTAC+AGG 0.297352 7_1:-62141352 Msa1028930:five_prime_UTR
TCTGCAAATTTGAATGAAAA+TGG 0.298193 7_1:+62143432 None:intergenic
AGATCAATGGTTGTGATATT+GGG 0.305246 7_1:-62142402 Msa1028930:five_prime_UTR
TTGTCCTTATATGAGCTCTT+AGG 0.306819 7_1:-62140887 Msa1028930:five_prime_UTR
TGATGGGGCACTATAATTTC+AGG 0.308556 7_1:-62140424 Msa1028930:five_prime_UTR
TGCACGCAAGATGTGGTAAA+TGG 0.310629 7_1:-62140702 Msa1028930:five_prime_UTR
AATACCGATGGATGAGAAAA+TGG 0.311096 7_1:+62143408 None:intergenic
CAGTTTGCGCTGTGCAATAT+TGG 0.315099 7_1:-62142503 Msa1028930:five_prime_UTR
GATAAGAGTGTGTTAGGATT+TGG 0.317639 7_1:-62140585 Msa1028930:five_prime_UTR
CATGTCATCATCACAACTAT+TGG 0.331708 7_1:-62140977 Msa1028930:five_prime_UTR
GTTGCATCTGTTACTATGTT+TGG 0.335200 7_1:-62141971 Msa1028930:five_prime_UTR
ACCAAGATGCCGTGGCAAAT+TGG 0.344869 7_1:+62140106 None:intergenic
TTGTTCTGTGCTTGCACTAC+AGG 0.344974 7_1:+62142472 None:intergenic
GGAAGTGGACTTTCTATGTT+TGG 0.344980 7_1:-62138388 Msa1028930:CDS
CATTCATCTTGCAGCTTCAA+TGG 0.345202 7_1:-62140325 Msa1028930:five_prime_UTR
TTACAACTTGGAGAATTATC+AGG 0.347917 7_1:-62138233 Msa1028930:CDS
TCACATTTCCGTTTACTGAT+AGG 0.349301 7_1:+62138690 None:intergenic
CCATGATAATGAAAGTAGTT+TGG 0.354057 7_1:-62142091 Msa1028930:five_prime_UTR
CTAAAGAGTTAATTCGGAAT+TGG 0.354176 7_1:-62138409 Msa1028930:CDS
TCTACCCTGTAAATCGTAAT+GGG 0.354469 7_1:+62141347 None:intergenic
TGGTGGAGTTAGTGCTGCTT+GGG 0.354811 7_1:-62139555 Msa1028930:CDS
TTTCATATATTTCTTATGAA+TGG 0.358342 7_1:+62141109 None:intergenic
CTTGGGCTAAAGAGTTAATT+CGG 0.360534 7_1:-62138415 Msa1028930:CDS
AAAACCTAAGAGCTCATATA+AGG 0.362276 7_1:+62140883 None:intergenic
TGGCTTCTGTGGTGGGAGTT+GGG 0.365270 7_1:-62139673 Msa1028930:CDS
ACCATCATTTATTAAAATAT+GGG 0.369723 7_1:+62141920 None:intergenic
CTAAGCTGTGCCTGTATCTA+TGG 0.371051 7_1:-62137903 Msa1028930:three_prime_UTR
AATAGTACAGTATGAGAATC+AGG 0.374522 7_1:+62141222 None:intergenic
TTCTGTGGTGGGAGTTGGGT+TGG 0.374529 7_1:-62139669 Msa1028930:CDS
CATGTTCCCATAACTATTGC+TGG 0.375703 7_1:-62142322 Msa1028930:five_prime_UTR
TTCCATTGCCTTTCTCTTCG+AGG 0.375846 7_1:+62142551 None:intergenic
TTTCTGAGTTGTTGAGGAAA+TGG 0.378781 7_1:-62138196 Msa1028930:CDS
TGAAGACAATGTCCTGGTTC+GGG 0.379961 7_1:-62142578 Msa1028930:five_prime_UTR
AGTAGTCGTCATGCTAATAC+TGG 0.380376 7_1:+62138097 None:intergenic
CCAAACTACTTTCATTATCA+TGG 0.380773 7_1:+62142091 None:intergenic
AAGTTCCTGCTCTTGGATGC+AGG 0.381134 7_1:+62138489 None:intergenic
GCTCCTTCACAAATAGCTTA+TGG 0.384887 7_1:-62139779 Msa1028930:CDS
GCCAATTTGCCACGGCATCT+TGG 0.384924 7_1:-62140107 Msa1028930:five_prime_UTR
ACAGAAAATGTGTGACCAAC+TGG 0.385814 7_1:+62139503 None:intergenic
TTGATTTCAATTCATATGTA+AGG 0.391536 7_1:-62142224 Msa1028930:five_prime_UTR
GTTTAAAAGGGCACCCTAAT+GGG 0.391573 7_1:-62140860 Msa1028930:five_prime_UTR
CCTGCCAATAATAAATATAT+AGG 0.392706 7_1:+62142201 None:intergenic
CTCTTTAGCCCAAGGTAAAT+GGG 0.397718 7_1:+62138424 None:intergenic
TTGTGAAGGAGCATTGTCTT+TGG 0.398244 7_1:+62139790 None:intergenic
TCTCTATTGAAGTCAGATTC+AGG 0.401208 7_1:+62139461 None:intergenic
AGTTTGCGCTGTGCAATATT+GGG 0.401915 7_1:-62142502 Msa1028930:five_prime_UTR
AGCCTCTTAGAGTGAATTAG+AGG 0.405082 7_1:-62141721 Msa1028930:five_prime_UTR
CAATATTGCACAGCGCAAAC+TGG 0.407075 7_1:+62142504 None:intergenic
TGGTGGGAGTTGGGTTGGTT+CGG 0.407828 7_1:-62139664 Msa1028930:CDS
TGTTTAAAAGGGCACCCTAA+TGG 0.408337 7_1:-62140861 Msa1028930:five_prime_UTR
CAAAAGTAGTTAGACTTAAG+AGG 0.408832 7_1:+62141437 None:intergenic
CTTGATTGATGTTAATGCTC+TGG 0.408845 7_1:-62140646 Msa1028930:five_prime_UTR
CAAGCCAACCATGCATGTTA+AGG 0.416328 7_1:-62138658 Msa1028930:CDS
ACTTTATTTACCATAGATAC+AGG 0.417062 7_1:+62137893 None:intergenic
TTGAAGACAATGTCCTGGTT+CGG 0.418613 7_1:-62142579 Msa1028930:five_prime_UTR
ACTGTCCTTGCAAGTCGAAT+TGG 0.423157 7_1:+62138623 None:intergenic
TGTTATTTGCATGAGGTTGT+AGG 0.423932 7_1:-62141687 Msa1028930:five_prime_UTR
AGAGATGAAGTTCCTGCTCT+TGG 0.428720 7_1:+62138482 None:intergenic
CCTATATATTTATTATTGGC+AGG 0.429270 7_1:-62142201 Msa1028930:five_prime_UTR
CCTTGTCCCAGCAATAGTTA+TGG 0.430126 7_1:+62142315 None:intergenic
CTTGTCCCAGCAATAGTTAT+GGG 0.433835 7_1:+62142316 None:intergenic
GTGAGGTTTCTGAGTTGTTG+AGG 0.434573 7_1:-62138202 Msa1028930:CDS
CTGATTCTGGCTTCTGTGGT+GGG 0.434678 7_1:-62139680 Msa1028930:CDS
ATCAGTGTGCATAGGTTAAA+GGG 0.437893 7_1:-62138024 Msa1028930:exon
CCTTTCTTATTGGCTTTCAT+GGG 0.438890 7_1:+62142358 None:intergenic
TTTGTGGAAGCTAGGAAACT+AGG 0.442454 7_1:+62142133 None:intergenic
CTGACTTCAATAGAGAGCTT+GGG 0.442911 7_1:-62139454 Msa1028930:CDS
ATGGTGGAGTTAGTGCTGCT+TGG 0.443562 7_1:-62139556 Msa1028930:CDS
CACCTCTAATTCACTCTAAG+AGG 0.447337 7_1:+62141719 None:intergenic
TATAAACTCCCATTTACCTT+GGG 0.449114 7_1:-62138432 Msa1028930:CDS
GATATTGGGGTGAGAGCTCT+TGG 0.450174 7_1:-62142388 Msa1028930:five_prime_UTR
TTCTACCCTGTAAATCGTAA+TGG 0.452522 7_1:+62141346 None:intergenic
CGGACCTATAGTTACGTTGA+AGG 0.453624 7_1:-62142605 Msa1028930:five_prime_UTR
AAACTTTCATTAACAATGAC+AGG 0.455493 7_1:+62139626 None:intergenic
GTAAATGGAATTGTTGATAA+GGG 0.457760 7_1:-62140687 Msa1028930:five_prime_UTR
GTATAGTAATGAAGCTGAAA+CGG 0.459213 7_1:+62141660 None:intergenic
ACTTGCAAGGACAGTTATGA+TGG 0.459966 7_1:-62138615 Msa1028930:CDS
GACAATGATAAGAGTGTGTT+AGG 0.462756 7_1:-62140591 Msa1028930:five_prime_UTR
TTTCAAAATCTGTTCGGACT+CGG 0.462962 7_1:-62143495 Msa1028930:five_prime_UTR
CTGTCAAAAGAGAGTAGAAA+GGG 0.463226 7_1:+62139846 None:intergenic
CAGGGTTACTCTTATAGCAT+TGG 0.465013 7_1:+62138508 None:intergenic
GAAGTGGACTTTCTATGTTT+GGG 0.466193 7_1:-62138387 Msa1028930:CDS
GAAAGCCAATAAGAAAGGTA+TGG 0.467226 7_1:-62142353 Msa1028930:five_prime_UTR
TCTGACTTCAATAGAGAGCT+TGG 0.468209 7_1:-62139455 Msa1028930:CDS
GCAGAACTCCTATCAGTAAA+CGG 0.468312 7_1:-62138698 Msa1028930:CDS
AGTTAATTCGGAATTGGAAG+TGG 0.468718 7_1:-62138403 Msa1028930:CDS
TGAAGGGCAGCCATTGTTGT+CGG 0.470065 7_1:-62141280 Msa1028930:five_prime_UTR
AGAGATCAATCACAACAGTT+TGG 0.470944 7_1:+62140516 None:intergenic
GTAAGATAATTTCGCGTCGC+GGG 0.474324 7_1:+62141534 None:intergenic
GTTGCCACATTCTTTACCAC+AGG 0.480636 7_1:+62141469 None:intergenic
TGCATGACAAGCTTGCAGTC+TGG 0.482060 7_1:-62140757 Msa1028930:five_prime_UTR
GGTAAATGGAATTGTTGATA+AGG 0.482125 7_1:-62140688 Msa1028930:five_prime_UTR
AGACTCTTTCAAAATCTGTT+CGG 0.482558 7_1:-62143501 Msa1028930:five_prime_UTR
CAAGGATCGGTGATGGGGAA+TGG 0.483479 7_1:-62142297 Msa1028930:five_prime_UTR
CTGGGACAAGGATCGGTGAT+GGG 0.483554 7_1:-62142303 Msa1028930:five_prime_UTR
GTTGGTGTGCCAGAAAATAT+TGG 0.483985 7_1:-62138128 Msa1028930:CDS
CAAGTCGAATTGGTGAGCTT+CGG 0.489721 7_1:+62138633 None:intergenic
TATAGTAATGAAGCTGAAAC+GGG 0.490911 7_1:+62141661 None:intergenic
AAGAGTGCTCGTTGTGGATG+GGG 0.493016 7_1:-62142530 Msa1028930:five_prime_UTR
GGTTTGCCCATCATGATGGT+AGG 0.494775 7_1:+62139811 None:intergenic
ATCAGGCACGAGACATGCTT+GGG 0.495002 7_1:+62141239 None:intergenic
TCCTTGAAATAAAATGGCTC+TGG 0.495526 7_1:-62142734 Msa1028930:five_prime_UTR
TTGTATAATAATATGATCAA+TGG 0.495823 7_1:-62137944 Msa1028930:three_prime_UTR
ATATATTTCTTATGAATGGA+TGG 0.495893 7_1:+62141113 None:intergenic
TTATAAACTCCCATTTACCT+TGG 0.496892 7_1:-62138433 Msa1028930:CDS
CACCAACACTACCATGTGTC+AGG 0.497942 7_1:+62138144 None:intergenic
TCTGATTCTGGCTTCTGTGG+TGG 0.499027 7_1:-62139681 Msa1028930:CDS
GGAAGAGTGCTCGTTGTGGA+TGG 0.499526 7_1:-62142532 Msa1028930:five_prime_UTR
TCAGCTTAAAGAGAGTCCTT+TGG 0.500245 7_1:+62140615 None:intergenic
AATCAGGCACGAGACATGCT+TGG 0.503197 7_1:+62141238 None:intergenic
CTTTGGTTTGCCCATCATGA+TGG 0.504289 7_1:+62139807 None:intergenic
CGAATTAACTCTTTAGCCCA+AGG 0.504302 7_1:+62138416 None:intergenic
AGTTATGATGGGTGTGCCAT+TGG 0.506298 7_1:-62138603 Msa1028930:CDS
CAGAGCATTAACATCAATCA+AGG 0.513001 7_1:+62140647 None:intergenic
GCACAGAACAATGGATGGGC+AGG 0.514058 7_1:-62142460 Msa1028930:five_prime_UTR
TGTTCTGATTCTGGCTTCTG+TGG 0.515692 7_1:-62139684 Msa1028930:CDS
TCAGATTTATGGTCGAAGAC+AGG 0.518932 7_1:-62142635 Msa1028930:five_prime_UTR
TAGACTGCAACATCATTCTA+CGG 0.520737 7_1:+62141882 None:intergenic
AGGTGTCACAATCATGTTGA+AGG 0.521471 7_1:-62141084 Msa1028930:five_prime_UTR
CCCATGAAAGCCAATAAGAA+AGG 0.521845 7_1:-62142358 Msa1028930:five_prime_UTR
CTTCAACGTAACTATAGGTC+CGG 0.524498 7_1:+62142606 None:intergenic
GCTGGGACAAGGATCGGTGA+TGG 0.524649 7_1:-62142304 Msa1028930:five_prime_UTR
AGGACAATACTTTAGAAAAG+TGG 0.525580 7_1:+62140903 None:intergenic
AACACCTTCAACGTAACTAT+AGG 0.525623 7_1:+62142601 None:intergenic
CATTAACACAATTGCGGAGA+GGG 0.526112 7_1:+62141994 None:intergenic
GAAGAGTGCTCGTTGTGGAT+GGG 0.527267 7_1:-62142531 Msa1028930:five_prime_UTR
CGGGAGTTCCTCGAAGAGAA+AGG 0.531311 7_1:-62142559 Msa1028930:five_prime_UTR
ATTATCAGGAGATGAGAGTG+AGG 0.531785 7_1:-62138219 Msa1028930:CDS
GTCTAGCACTCTAGCCAAGT+TGG 0.532422 7_1:+62140209 None:intergenic
ATTCAAAACAGAGATTAAGT+TGG 0.532675 7_1:+62142049 None:intergenic
GTAACCCTGCATCCAAGAGC+AGG 0.533000 7_1:-62138494 Msa1028930:CDS
CATAAGAAATATATGAAATG+AGG 0.537248 7_1:-62141104 Msa1028930:five_prime_UTR
TTGTGGAAGCTAGGAAACTA+GGG 0.540709 7_1:+62142134 None:intergenic
TGATTAGATATATCTTTACT+GGG 0.542568 7_1:+62140187 None:intergenic
TCTGAGTCCTACCATCATGA+TGG 0.543612 7_1:-62139818 Msa1028930:CDS
ATTTCGGCTTCGTATAGTTG+TGG 0.544381 7_1:+62138458 None:intergenic
AGTGCGTTATAAATTTGGTA+TGG 0.545076 7_1:-62141831 Msa1028930:five_prime_UTR
TTCCACATAGCAGCATCGTA+AGG 0.545355 7_1:-62141786 Msa1028930:five_prime_UTR
AACTTAACTATCCATCTCCA+TGG 0.545471 7_1:-62139945 Msa1028930:exon
ATCACAGCAAGTTCTAGTGA+TGG 0.545612 7_1:+62140730 None:intergenic
TGCAGTGTTGTTGCATGCTG+TGG 0.545621 7_1:+62140048 None:intergenic
ACTATTGCTGGGACAAGGAT+CGG 0.546867 7_1:-62142310 Msa1028930:five_prime_UTR
GCAGTCTAGAAACTAAATGA+AGG 0.549761 7_1:-62141867 Msa1028930:five_prime_UTR
AAAGCCAATAAGAAAGGTAT+GGG 0.553213 7_1:-62142352 Msa1028930:five_prime_UTR
TGCAAATTGCCAATTTGCCA+CGG 0.553446 7_1:-62140115 Msa1028930:five_prime_UTR
TGCAAGCACAGAACAATGGA+TGG 0.553793 7_1:-62142465 Msa1028930:five_prime_UTR
AAACTAAATGAAGGAAAGAT+CGG 0.555295 7_1:-62141858 Msa1028930:five_prime_UTR
TTAAATGAAAATACAGCTGT+AGG 0.555515 7_1:+62139578 None:intergenic
TTGGCAGGCAAGACATATCA+TGG 0.556805 7_1:-62142186 Msa1028930:five_prime_UTR
AGTTCCTGCTCTTGGATGCA+GGG 0.559736 7_1:+62138490 None:intergenic
CCATAACTATTGCTGGGACA+AGG 0.560406 7_1:-62142315 Msa1028930:five_prime_UTR
CTTCGAGGAACTCCCGAACC+AGG 0.562244 7_1:+62142566 None:intergenic
GGAACCTTAACATGCATGGT+TGG 0.562646 7_1:+62138654 None:intergenic
AAATCAATGTAGAAATATTG+AGG 0.563339 7_1:-62138553 Msa1028930:CDS
ATCATCTTCAACAGCAACAC+TGG 0.566618 7_1:+62138061 None:intergenic
ATCCTTACGATGCTGCTATG+TGG 0.567443 7_1:+62141784 None:intergenic
TGGGCAGGTATCATTGTGAA+TGG 0.567768 7_1:-62142445 Msa1028930:five_prime_UTR
AACATATTGATATACTTGCA+TGG 0.568611 7_1:+62140149 None:intergenic
CTTCGGAACCTTAACATGCA+TGG 0.569206 7_1:+62138650 None:intergenic
ACTTAACTATCCATCTCCAT+GGG 0.571287 7_1:-62139944 Msa1028930:exon
TAGAGTAAGTCTGCTGGTGT+AGG 0.572641 7_1:+62139893 None:intergenic
TGCTCTGGTTAATATGCCAA+AGG 0.574698 7_1:-62140631 Msa1028930:five_prime_UTR
ACTGCAGTTTAGACTTGAGA+GGG 0.577805 7_1:+62139988 None:intergenic
ACTGTCAAAAGAGAGTAGAA+AGG 0.578525 7_1:+62139845 None:intergenic
CTGAGTCCTACCATCATGAT+GGG 0.579403 7_1:-62139817 Msa1028930:CDS
CTGTTGTAGAGTAAGTCTGC+TGG 0.580111 7_1:+62139887 None:intergenic
CTACCATAAGCTATTTGTGA+AGG 0.580655 7_1:+62139776 None:intergenic
TCATGTGCTGATTATGTCCA+TGG 0.581990 7_1:-62140363 Msa1028930:five_prime_UTR
AACTGCAGTTTAGACTTGAG+AGG 0.584394 7_1:+62139987 None:intergenic
ATGGGTGTGCCATTGGTGCT+AGG 0.586769 7_1:-62138596 Msa1028930:CDS
ATGTTCCCATAACTATTGCT+GGG 0.588122 7_1:-62142321 Msa1028930:five_prime_UTR
GCATTTGTGTTATTTGCATG+AGG 0.589775 7_1:-62141694 Msa1028930:five_prime_UTR
GCTCACCAATTCGACTTGCA+AGG 0.592809 7_1:-62138628 Msa1028930:CDS
TGACACTATTATCTGCTCCA+TGG 0.594400 7_1:+62140346 None:intergenic
TGGCTTTATGCAGACACCGA+TGG 0.594724 7_1:-62142277 Msa1028930:five_prime_UTR
GAACATAAAGAATTACAACT+TGG 0.599941 7_1:-62138245 Msa1028930:CDS
ATGAAAATGCACGCAAGATG+TGG 0.606205 7_1:-62140709 Msa1028930:five_prime_UTR
ATCCTGACACATGGTAGTGT+TGG 0.606226 7_1:-62138146 Msa1028930:CDS
CCCCGCTCAAAATTAACTGA+GGG 0.606816 7_1:+62142683 None:intergenic
TGACTTCAATAGAGAGCTTG+GGG 0.607068 7_1:-62139453 Msa1028930:CDS
TTCCTCGAAGAGAAAGGCAA+TGG 0.608108 7_1:-62142553 Msa1028930:five_prime_UTR
TGGGACAAGGATCGGTGATG+GGG 0.608225 7_1:-62142302 Msa1028930:five_prime_UTR
CTATGTGGAAATAAGAGACA+AGG 0.609661 7_1:+62141799 None:intergenic
TGCTGTTGAAGATGATGTTG+AGG 0.611368 7_1:-62138054 Msa1028930:CDS
AGAGTGCTCGTTGTGGATGG+GGG 0.612554 7_1:-62142529 Msa1028930:five_prime_UTR
GGTGTTTGAAGACAATGTCC+TGG 0.615251 7_1:-62142584 Msa1028930:five_prime_UTR
AGGGTTCGCATCACACACTT+CGG 0.620165 7_1:+62142702 None:intergenic
AAGCATATACGTGTTCCAGT+TGG 0.623868 7_1:-62139518 Msa1028930:CDS
GCTGAGATTCCTAGCACCAA+TGG 0.626325 7_1:+62138587 None:intergenic
ATTGTGTGCTGAGAGTGACT+TGG 0.628900 7_1:-62141047 Msa1028930:five_prime_UTR
GACTCTGAATCAGTGTGCAT+AGG 0.629022 7_1:-62138032 Msa1028930:CDS
AGTCAGATTCAGGCATCAAG+AGG 0.629541 7_1:+62139471 None:intergenic
AGAGATGTGGATGAGATCAA+TGG 0.633740 7_1:-62142415 Msa1028930:five_prime_UTR
GATCAATGGTTGTGATATTG+GGG 0.635484 7_1:-62142401 Msa1028930:five_prime_UTR
TCGAGAGATCAGAATTCCAT+CGG 0.636216 7_1:+62142261 None:intergenic
AAGTGGTGCCTAAACCATGA+TGG 0.640120 7_1:+62140920 None:intergenic
GTAGTGCAAGCACAGAACAA+TGG 0.640217 7_1:-62142469 Msa1028930:five_prime_UTR
TCCCCGCTCAAAATTAACTG+AGG 0.641261 7_1:+62142682 None:intergenic
GCAAGCACAGAACAATGGAT+GGG 0.641265 7_1:-62142464 Msa1028930:five_prime_UTR
CTTGCAAGGACAGTTATGAT+GGG 0.641602 7_1:-62138614 Msa1028930:CDS
TGCAACCATTAACACAATTG+CGG 0.644705 7_1:+62141988 None:intergenic
AGCATCGTAAGGATTTCTGA+TGG 0.645920 7_1:-62141775 Msa1028930:five_prime_UTR
GGTGGAGTTAGTGCTGCTTG+GGG 0.648347 7_1:-62139554 Msa1028930:CDS
TTGCCACATTCTTTACCACA+GGG 0.648572 7_1:+62141470 None:intergenic
AGCTGCACAACCGACAACAA+TGG 0.651161 7_1:+62141270 None:intergenic
AGAAGCCAGAATCAGAACAA+AGG 0.655880 7_1:+62139688 None:intergenic
GAATGGATGTATAAGAGATG+TGG 0.656133 7_1:-62142428 Msa1028930:five_prime_UTR
AGAACAAGACCAAGATGCCG+TGG 0.657174 7_1:+62140098 None:intergenic
ATGCCCCATTACGATTTACA+GGG 0.659241 7_1:-62141351 Msa1028930:five_prime_UTR
GTCAGATTCAGGCATCAAGA+GGG 0.661021 7_1:+62139472 None:intergenic
TGTAAGATAATTTCGCGTCG+CGG 0.665003 7_1:+62141533 None:intergenic
TGTAGAAATATTGAGGCACA+AGG 0.666582 7_1:-62138546 Msa1028930:CDS
TGGCCCTGTGGTAAAGAATG+TGG 0.666786 7_1:-62141473 Msa1028930:five_prime_UTR
CAATGGAAGAGTGCTCGTTG+TGG 0.668797 7_1:-62142536 Msa1028930:five_prime_UTR
TGTGCCAGAAAATATTGGCG+AGG 0.672710 7_1:-62138123 Msa1028930:CDS
GTAGAAAGGGGAAAAGACAG+AGG 0.673099 7_1:+62139859 None:intergenic
AGACTTACTCTACAACAGCA+TGG 0.676702 7_1:-62139882 Msa1028930:CDS
CTTAACTATCCATCTCCATG+GGG 0.676760 7_1:-62139943 Msa1028930:exon
CTACCCTGTAAATCGTAATG+GGG 0.677628 7_1:+62141348 None:intergenic
CTTAGAGTGAATTAGAGGTG+AGG 0.686484 7_1:-62141716 Msa1028930:five_prime_UTR
AGAAAGACTATCCTGACACA+TGG 0.690517 7_1:-62138155 Msa1028930:CDS
TGATGACATGAAGCATGTGA+TGG 0.697596 7_1:+62140990 None:intergenic
CCATTAACACAATTGCGGAG+AGG 0.698873 7_1:+62141993 None:intergenic
TGTCAAAAGAGAGTAGAAAG+GGG 0.699529 7_1:+62139847 None:intergenic
TTGCGCTGTGCAATATTGGG+TGG 0.699986 7_1:-62142499 Msa1028930:five_prime_UTR
TTAACTATCCATCTCCATGG+GGG 0.731886 7_1:-62139942 Msa1028930:exon
CGGGAAGATAGACTTTACAG+AGG 0.740426 7_1:+62141553 None:intergenic
TGTGTGACAAGAAAGATGAG+TGG 0.759207 7_1:+62138311 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTACTTTTTTTTGAAA+TGG - chr7_1:62140212-62140231 Msa1028930:five_prime_UTR 10.0%
!!! CTATTTTTTTTTTTTATGAA+AGG - chr7_1:62141134-62141153 Msa1028930:five_prime_UTR 10.0%
!! TGAATAATATATAGAAGAAA+AGG + chr7_1:62138125-62138144 None:intergenic 15.0%
!! TTCTATTATAAATAAAAACC+AGG - chr7_1:62138395-62138414 Msa1028930:CDS 15.0%
!! ACCATCATTTATTAAAATAT+GGG + chr7_1:62139497-62139516 None:intergenic 15.0%
!! TACCATCATTTATTAAAATA+TGG + chr7_1:62139498-62139517 None:intergenic 15.0%
!!! TACTATTTTTATATACTTGT+GGG - chr7_1:62140242-62140261 Msa1028930:five_prime_UTR 15.0%
!! TTTCATATATTTCTTATGAA+TGG + chr7_1:62140308-62140327 None:intergenic 15.0%
!! ATAAAAAAAAATGAATCTGA+TGG - chr7_1:62140973-62140992 Msa1028930:five_prime_UTR 15.0%
!! TAAAAAAAAATGAATCTGAT+GGG - chr7_1:62140974-62140993 Msa1028930:five_prime_UTR 15.0%
!!! TATAATAAGTTTCCTTTTTT+AGG - chr7_1:62142162-62142181 Msa1028930:five_prime_UTR 15.0%
!!! ATAATAAGTTTCCTTTTTTA+GGG - chr7_1:62142163-62142182 Msa1028930:five_prime_UTR 15.0%
!!! TTTTCTTTGAAATTTTCATT+CGG - chr7_1:62142188-62142207 Msa1028930:five_prime_UTR 15.0%
!! AATTATTGTTTGTCATTAAT+TGG - chr7_1:62142281-62142300 Msa1028930:five_prime_UTR 15.0%
!! TTGTATAATAATATGATCAA+TGG - chr7_1:62143470-62143489 Msa1028930:five_prime_UTR 15.0%
!! AGTAGTTAGAAATTGTAAAA+TGG + chr7_1:62138079-62138098 None:intergenic 20.0%
!!! TTACATATAGGAAAAGTATA+TGG + chr7_1:62138194-62138213 None:intergenic 20.0%
!! ATAAACTCAATCAATTTGAT+TGG + chr7_1:62138266-62138285 None:intergenic 20.0%
!!! CTTAATAAAGACATTTTCAT+AGG + chr7_1:62138298-62138317 None:intergenic 20.0%
!!! TTTTCGTATATTTTTCCTAT+GGG - chr7_1:62138564-62138583 Msa1028930:CDS 20.0%
!!! CTGAAATTGTTTTTTATTTG+TGG - chr7_1:62138647-62138666 Msa1028930:CDS 20.0%
!! TTGATTTCAATTCATATGTA+AGG - chr7_1:62139190-62139209 Msa1028930:intron 20.0%
!! AAGGCCTATATATTTATTAT+TGG - chr7_1:62139209-62139228 Msa1028930:intron 20.0%
!!! GTACTATTTTTATATACTTG+TGG - chr7_1:62140241-62140260 Msa1028930:five_prime_UTR 20.0%
!! ATATATTTCTTATGAATGGA+TGG + chr7_1:62140304-62140323 None:intergenic 20.0%
!! CATAAGAAATATATGAAATG+AGG - chr7_1:62140310-62140329 Msa1028930:five_prime_UTR 20.0%
!!! TCATCAAATATCTTGTATTT+TGG + chr7_1:62140635-62140654 None:intergenic 20.0%
!! AAAAAAAAATGAATCTGATG+GGG - chr7_1:62140975-62140994 Msa1028930:five_prime_UTR 20.0%
!! TGATTAGATATATCTTTACT+GGG + chr7_1:62141230-62141249 None:intergenic 20.0%
!! TTGATTAGATATATCTTTAC+TGG + chr7_1:62141231-62141250 None:intergenic 20.0%
!! ATAAAGAAAATGCAAGTAAA+TGG + chr7_1:62142386-62142405 None:intergenic 20.0%
!! AACTAATTGAAGTTAGAATT+TGG - chr7_1:62142501-62142520 Msa1028930:five_prime_UTR 20.0%
!!! TTGTTTTAAATTGTGTAACA+AGG - chr7_1:62142576-62142595 Msa1028930:five_prime_UTR 20.0%
!! AAATCAATGTAGAAATATTG+AGG - chr7_1:62142861-62142880 Msa1028930:intron 20.0%
!!! ATATTTAGTTGCTTTGAAAA+TGG - chr7_1:62143414-62143433 Msa1028930:five_prime_UTR 20.0%
! TCTGCAAATTTGAATGAAAA+TGG + chr7_1:62137985-62138004 None:intergenic 25.0%
! ATAAGAGATATAAATACCGA+TGG + chr7_1:62138021-62138040 None:intergenic 25.0%
!! ACTAGCTTACATTTACATAT+AGG + chr7_1:62138206-62138225 None:intergenic 25.0%
!! CTTTTCGTATATTTTTCCTA+TGG - chr7_1:62138563-62138582 Msa1028930:CDS 25.0%
! AATCTGAAAAATTGGTTGAA+GGG + chr7_1:62138766-62138785 None:intergenic 25.0%
! AAATCTGAAAAATTGGTTGA+AGG + chr7_1:62138767-62138786 None:intergenic 25.0%
!!! CAACCAATTTTTCAGATTTA+TGG - chr7_1:62138768-62138787 Msa1028930:intron 25.0%
! CCTGCCAATAATAAATATAT+AGG + chr7_1:62139216-62139235 None:intergenic 25.0%
! CCTATATATTTATTATTGGC+AGG - chr7_1:62139213-62139232 Msa1028930:intron 25.0%
! ATTCAAAACAGAGATTAAGT+TGG + chr7_1:62139368-62139387 None:intergenic 25.0%
!!! GCCCATATTTTAATAAATGA+TGG - chr7_1:62139493-62139512 Msa1028930:CDS 25.0%
! AAACTAAATGAAGGAAAGAT+CGG - chr7_1:62139556-62139575 Msa1028930:CDS 25.0%
! ATATTACTAAAAAGTTGCAG+TGG - chr7_1:62139903-62139922 Msa1028930:CDS 25.0%
! TATTACTAAAAAGTTGCAGT+GGG - chr7_1:62139904-62139923 Msa1028930:CDS 25.0%
!!! CTCTTAGGTTTTGTTTAAAA+GGG - chr7_1:62140542-62140561 Msa1028930:five_prime_UTR 25.0%
!! GTAAATGGAATTGTTGATAA+GGG - chr7_1:62140727-62140746 Msa1028930:five_prime_UTR 25.0%
! AACATATTGATATACTTGCA+TGG + chr7_1:62141268-62141287 None:intergenic 25.0%
!!! ATAGTTTTGCTTAAGAAACT+GGG - chr7_1:62141662-62141681 Msa1028930:five_prime_UTR 25.0%
! AAACTTTCATTAACAATGAC+AGG + chr7_1:62141791-62141810 None:intergenic 25.0%
! TTAAATGAAAATACAGCTGT+AGG + chr7_1:62141839-62141858 None:intergenic 25.0%
!! ACAGCTGTATTTTCATTTAA+TGG - chr7_1:62141839-62141858 Msa1028930:five_prime_UTR 25.0%
!!! TACATATGTTTTAGATTCCT+TGG - chr7_1:62142228-62142247 Msa1028930:five_prime_UTR 25.0%
! ATTGTTTGTCATTAATTGGT+AGG - chr7_1:62142285-62142304 Msa1028930:five_prime_UTR 25.0%
!! GTAAAATTGATTCTAAGCAA+AGG - chr7_1:62142424-62142443 Msa1028930:five_prime_UTR 25.0%
! GAATGTAAAAGTGATTATGT+TGG - chr7_1:62142453-62142472 Msa1028930:five_prime_UTR 25.0%
!! AATTGATTCATCAATTCTAG+AGG + chr7_1:62142535-62142554 None:intergenic 25.0%
!! TCTAGAATTGATGAATCAAT+TGG - chr7_1:62142534-62142553 Msa1028930:five_prime_UTR 25.0%
! ACAAATCTTATTAACTCTTC+AGG + chr7_1:62142683-62142702 None:intergenic 25.0%
! ATGGGAGTTTATAACAATTT+CGG + chr7_1:62142975-62142994 None:intergenic 25.0%
! GAACATAAAGAATTACAACT+TGG - chr7_1:62143169-62143188 Msa1028930:intron 25.0%
!!! AATGGTTGATAAATTGCTTT+TGG - chr7_1:62143432-62143451 Msa1028930:five_prime_UTR 25.0%
!! ACTTTATTTACCATAGATAC+AGG + chr7_1:62143524-62143543 None:intergenic 25.0%
AGACTCTTTCAAAATCTGTT+CGG - chr7_1:62137913-62137932 Msa1028930:three_prime_UTR 30.0%
CTATGATAGAATTAACGTCA+CGG + chr7_1:62138152-62138171 None:intergenic 30.0%
AAAGAAATCAAGAAACCCAT+AGG + chr7_1:62138582-62138601 None:intergenic 30.0%
!!! TTTTTTATTTGTGGTGTTGC+AGG - chr7_1:62138656-62138675 Msa1028930:CDS 30.0%
CGACCATAAATCTGAAAAAT+TGG + chr7_1:62138774-62138793 None:intergenic 30.0%
AGATCAATGGTTGTGATATT+GGG - chr7_1:62139012-62139031 Msa1028930:intron 30.0%
! AAAGCCAATAAGAAAGGTAT+GGG - chr7_1:62139062-62139081 Msa1028930:intron 30.0%
CCAAACTACTTTCATTATCA+TGG + chr7_1:62139326-62139345 None:intergenic 30.0%
! CCATGATAATGAAAGTAGTT+TGG - chr7_1:62139323-62139342 Msa1028930:intron 30.0%
!! GAGATTAAGTTGGTGTAAAA+TGG + chr7_1:62139358-62139377 None:intergenic 30.0%
! GCATGTATGTATTTTGCATT+TGG + chr7_1:62139475-62139494 None:intergenic 30.0%
GTATCAGTGCGTTATAAATT+TGG - chr7_1:62139578-62139597 Msa1028930:CDS 30.0%
AGTGCGTTATAAATTTGGTA+TGG - chr7_1:62139583-62139602 Msa1028930:CDS 30.0%
TATAGTAATGAAGCTGAAAC+GGG + chr7_1:62139756-62139775 None:intergenic 30.0%
GTATAGTAATGAAGCTGAAA+CGG + chr7_1:62139757-62139776 None:intergenic 30.0%
ATTACTAAAAAGTTGCAGTG+GGG - chr7_1:62139905-62139924 Msa1028930:CDS 30.0%
CAAAAGTAGTTAGACTTAAG+AGG + chr7_1:62139980-62139999 None:intergenic 30.0%
! CTCTTAAGTCTAACTACTTT+TGG - chr7_1:62139978-62139997 Msa1028930:five_prime_UTR 30.0%
!! TCAAAACTGACTACTTTTGA+AGG - chr7_1:62140117-62140136 Msa1028930:five_prime_UTR 30.0%
!! CAAAACTGACTACTTTTGAA+GGG - chr7_1:62140118-62140137 Msa1028930:five_prime_UTR 30.0%
AATAGTACAGTATGAGAATC+AGG + chr7_1:62140195-62140214 None:intergenic 30.0%
TGGATCAATGTTTCTTCTAA+TGG - chr7_1:62140387-62140406 Msa1028930:five_prime_UTR 30.0%
!!! GAAACTTTTTTGTACCATCA+TGG - chr7_1:62140480-62140499 Msa1028930:five_prime_UTR 30.0%
! TTTTTGTACCATCATGGTTT+AGG - chr7_1:62140486-62140505 Msa1028930:five_prime_UTR 30.0%
! AGGACAATACTTTAGAAAAG+TGG + chr7_1:62140514-62140533 None:intergenic 30.0%
AAAACCTAAGAGCTCATATA+AGG + chr7_1:62140534-62140553 None:intergenic 30.0%
!!! GCTCTTAGGTTTTGTTTAAA+AGG - chr7_1:62140541-62140560 Msa1028930:five_prime_UTR 30.0%
GGTAAATGGAATTGTTGATA+AGG - chr7_1:62140726-62140745 Msa1028930:five_prime_UTR 30.0%
! AAGAGCTTTTAATCATATGC+AGG - chr7_1:62140940-62140959 Msa1028930:five_prime_UTR 30.0%
! GCAAAACAAATGAGTCTTTT+TGG + chr7_1:62141502-62141521 None:intergenic 30.0%
!! CATAGTTTTGCTTAAGAAAC+TGG - chr7_1:62141661-62141680 Msa1028930:five_prime_UTR 30.0%
! GCTGTATTTTCATTTAATGG+TGG - chr7_1:62141842-62141861 Msa1028930:five_prime_UTR 30.0%
ATGAAATCTGAGAGACAAAA+AGG + chr7_1:62142000-62142019 None:intergenic 30.0%
TCATTCTATTGGCACTAAAT+TGG + chr7_1:62142068-62142087 None:intergenic 30.0%
! TTGTTGGCATTTTCTTTAAC+AGG + chr7_1:62142121-62142140 None:intergenic 30.0%
AAGAAAATGCCAACAACTAT+AGG - chr7_1:62142125-62142144 Msa1028930:five_prime_UTR 30.0%
AGAAAATGCCAACAACTATA+GGG - chr7_1:62142126-62142145 Msa1028930:five_prime_UTR 30.0%
CAAAGAAAACTCCCTAAAAA+AGG + chr7_1:62142177-62142196 None:intergenic 30.0%
!!! CTTTGAAATTTTCATTCGGA+TGG - chr7_1:62142192-62142211 Msa1028930:five_prime_UTR 30.0%
TTATAAACTCCCATTTACCT+TGG - chr7_1:62142981-62143000 Msa1028930:intron 30.0%
TATAAACTCCCATTTACCTT+GGG - chr7_1:62142982-62143001 Msa1028930:intron 30.0%
CTAAAGAGTTAATTCGGAAT+TGG - chr7_1:62143005-62143024 Msa1028930:intron 30.0%
TGCTTCTCTTATATTGTTAC+AGG - chr7_1:62143080-62143099 Msa1028930:intron 30.0%
! AAGATACTTTTAGTGAGCAA+AGG - chr7_1:62143125-62143144 Msa1028930:intron 30.0%
! AGATACTTTTAGTGAGCAAA+GGG - chr7_1:62143126-62143145 Msa1028930:intron 30.0%
TTACAACTTGGAGAATTATC+AGG - chr7_1:62143181-62143200 Msa1028930:intron 30.0%
!! GAACAGATTTTGAAAGAGTC+TGG + chr7_1:62137914-62137933 None:intergenic 35.0%
TTTCAAAATCTGTTCGGACT+CGG - chr7_1:62137919-62137938 Msa1028930:three_prime_UTR 35.0%
! AGATCCATTTTCTCATCCAT+CGG - chr7_1:62138002-62138021 Msa1028930:three_prime_UTR 35.0%
AATACCGATGGATGAGAAAA+TGG + chr7_1:62138009-62138028 None:intergenic 35.0%
GCAGGTTCCTTGAAATAAAA+TGG - chr7_1:62138674-62138693 Msa1028930:CDS 35.0%
TCCTTGAAATAAAATGGCTC+TGG - chr7_1:62138680-62138699 Msa1028930:CDS 35.0%
!! ACCAGAGCCATTTTATTTCA+AGG + chr7_1:62138684-62138703 None:intergenic 35.0%
! AACCCTCAGTTAATTTTGAG+CGG - chr7_1:62138729-62138748 Msa1028930:intron 35.0%
AACACCTTCAACGTAACTAT+AGG + chr7_1:62138816-62138835 None:intergenic 35.0%
GAATGGATGTATAAGAGATG+TGG - chr7_1:62138986-62139005 Msa1028930:intron 35.0%
GAGATCAATGGTTGTGATAT+TGG - chr7_1:62139011-62139030 Msa1028930:intron 35.0%
GATCAATGGTTGTGATATTG+GGG - chr7_1:62139013-62139032 Msa1028930:intron 35.0%
!! CCTTTCTTATTGGCTTTCAT+GGG + chr7_1:62139059-62139078 None:intergenic 35.0%
!! ACCTTTCTTATTGGCTTTCA+TGG + chr7_1:62139060-62139079 None:intergenic 35.0%
GAAAGCCAATAAGAAAGGTA+TGG - chr7_1:62139061-62139080 Msa1028930:intron 35.0%
TTCTCCCATACCTTTCTTAT+TGG + chr7_1:62139069-62139088 None:intergenic 35.0%
ATGTTCCCATAACTATTGCT+GGG - chr7_1:62139093-62139112 Msa1028930:intron 35.0%
TGCAACCATTAACACAATTG+CGG + chr7_1:62139429-62139448 None:intergenic 35.0%
GTTGCATCTGTTACTATGTT+TGG - chr7_1:62139443-62139462 Msa1028930:intron 35.0%
TAGACTGCAACATCATTCTA+CGG + chr7_1:62139535-62139554 None:intergenic 35.0%
GCAGTCTAGAAACTAAATGA+AGG - chr7_1:62139547-62139566 Msa1028930:CDS 35.0%
CTATGTGGAAATAAGAGACA+AGG + chr7_1:62139618-62139637 None:intergenic 35.0%
!! GCATTTGTGTTATTTGCATG+AGG - chr7_1:62139720-62139739 Msa1028930:CDS 35.0%
! TGTTATTTGCATGAGGTTGT+AGG - chr7_1:62139727-62139746 Msa1028930:CDS 35.0%
TTACTAAAAAGTTGCAGTGG+GGG - chr7_1:62139906-62139925 Msa1028930:CDS 35.0%
!! AGTCTAACTACTTTTGGACA+TGG - chr7_1:62139984-62140003 Msa1028930:five_prime_UTR 35.0%
!! ACTACTTTTGGACATGGAAT+AGG - chr7_1:62139990-62140009 Msa1028930:five_prime_UTR 35.0%
! TTTTGGACATGGAATAGGAA+AGG - chr7_1:62139995-62140014 Msa1028930:five_prime_UTR 35.0%
TCTACCCTGTAAATCGTAAT+GGG + chr7_1:62140070-62140089 None:intergenic 35.0%
TTCTACCCTGTAAATCGTAA+TGG + chr7_1:62140071-62140090 None:intergenic 35.0%
CATGTCATCATCACAACTAT+TGG - chr7_1:62140437-62140456 Msa1028930:five_prime_UTR 35.0%
TTGTCCTTATATGAGCTCTT+AGG - chr7_1:62140527-62140546 Msa1028930:five_prime_UTR 35.0%
!! TCACTTTTCTCAACCCATTA+GGG + chr7_1:62140570-62140589 None:intergenic 35.0%
!! TTCACTTTTCTCAACCCATT+AGG + chr7_1:62140571-62140590 None:intergenic 35.0%
!! TTTTTAGCCCGAGACTTTTT+TGG - chr7_1:62140605-62140624 Msa1028930:five_prime_UTR 35.0%
TTGGTACACCAAAAAAGTCT+CGG + chr7_1:62140616-62140635 None:intergenic 35.0%
! CAGAGCATTAACATCAATCA+AGG + chr7_1:62140770-62140789 None:intergenic 35.0%
CTTGATTGATGTTAATGCTC+TGG - chr7_1:62140768-62140787 Msa1028930:five_prime_UTR 35.0%
! GACAATGATAAGAGTGTGTT+AGG - chr7_1:62140823-62140842 Msa1028930:five_prime_UTR 35.0%
! GATAAGAGTGTGTTAGGATT+TGG - chr7_1:62140829-62140848 Msa1028930:five_prime_UTR 35.0%
! TAGGATTTGGCGACAATTTT+TGG - chr7_1:62140842-62140861 Msa1028930:five_prime_UTR 35.0%
!!! ACAATTTTTGGTGTGGTTTG+TGG - chr7_1:62140854-62140873 Msa1028930:five_prime_UTR 35.0%
AGAGATCAATCACAACAGTT+TGG + chr7_1:62140901-62140920 None:intergenic 35.0%
CTCTTCTCTTCTAACATTTC+AGG + chr7_1:62140925-62140944 None:intergenic 35.0%
!!! TGTTGAGTTTTGGGCTTTTT+TGG + chr7_1:62141166-62141185 None:intergenic 35.0%
AACTTAACTATCCATCTCCA+TGG - chr7_1:62141469-62141488 Msa1028930:five_prime_UTR 35.0%
ACTTAACTATCCATCTCCAT+GGG - chr7_1:62141470-62141489 Msa1028930:five_prime_UTR 35.0%
TGTCAAAAGAGAGTAGAAAG+GGG + chr7_1:62141570-62141589 None:intergenic 35.0%
CTGTCAAAAGAGAGTAGAAA+GGG + chr7_1:62141571-62141590 None:intergenic 35.0%
ACTGTCAAAAGAGAGTAGAA+AGG + chr7_1:62141572-62141591 None:intergenic 35.0%
CTACCATAAGCTATTTGTGA+AGG + chr7_1:62141641-62141660 None:intergenic 35.0%
TCTCTATTGAAGTCAGATTC+AGG + chr7_1:62141956-62141975 None:intergenic 35.0%
TACACATGTGAGTTGTGATA+TGG - chr7_1:62142025-62142044 Msa1028930:five_prime_UTR 35.0%
TTTAGTGCCAATAGAATGAG+AGG - chr7_1:62142069-62142088 Msa1028930:five_prime_UTR 35.0%
AACATCTTCCCTATAGTTGT+TGG + chr7_1:62142137-62142156 None:intergenic 35.0%
TCACATTTCCGTTTACTGAT+AGG + chr7_1:62142727-62142746 None:intergenic 35.0%
TGTAGAAATATTGAGGCACA+AGG - chr7_1:62142868-62142887 Msa1028930:intron 35.0%
CTTGGGCTAAAGAGTTAATT+CGG - chr7_1:62142999-62143018 Msa1028930:intron 35.0%
AGTTAATTCGGAATTGGAAG+TGG - chr7_1:62143011-62143030 Msa1028930:intron 35.0%
! GAAGTGGACTTTCTATGTTT+GGG - chr7_1:62143027-62143046 Msa1028930:intron 35.0%
TTTCTGAGTTGTTGAGGAAA+TGG - chr7_1:62143218-62143237 Msa1028930:intron 35.0%
AATCAGTGTGCATAGGTTAA+AGG - chr7_1:62143389-62143408 Msa1028930:intron 35.0%
ATCAGTGTGCATAGGTTAAA+GGG - chr7_1:62143390-62143409 Msa1028930:intron 35.0%
ACGAGAAGCTATTGTATTGC+AGG - chr7_1:62138537-62138556 Msa1028930:CDS 40.0%
! ACCCTCAGTTAATTTTGAGC+GGG - chr7_1:62138730-62138749 Msa1028930:intron 40.0%
TCAGATTTATGGTCGAAGAC+AGG - chr7_1:62138779-62138798 Msa1028930:intron 40.0%
CTTCAACGTAACTATAGGTC+CGG + chr7_1:62138811-62138830 None:intergenic 40.0%
TTGAAGACAATGTCCTGGTT+CGG - chr7_1:62138835-62138854 Msa1028930:intron 40.0%
AGTTTGCGCTGTGCAATATT+GGG - chr7_1:62138912-62138931 Msa1028930:intron 40.0%
AGAGATGTGGATGAGATCAA+TGG - chr7_1:62138999-62139018 Msa1028930:intron 40.0%
CCCATGAAAGCCAATAAGAA+AGG - chr7_1:62139056-62139075 Msa1028930:intron 40.0%
CATGTTCCCATAACTATTGC+TGG - chr7_1:62139092-62139111 Msa1028930:intron 40.0%
CTTGTCCCAGCAATAGTTAT+GGG + chr7_1:62139101-62139120 None:intergenic 40.0%
TCGAGAGATCAGAATTCCAT+CGG + chr7_1:62139156-62139175 None:intergenic 40.0%
TTGTGGAAGCTAGGAAACTA+GGG + chr7_1:62139283-62139302 None:intergenic 40.0%
TTTGTGGAAGCTAGGAAACT+AGG + chr7_1:62139284-62139303 None:intergenic 40.0%
! GTTGCAATTTTGTGGAAGCT+AGG + chr7_1:62139292-62139311 None:intergenic 40.0%
!! CTGATAGCGTTGCAATTTTG+TGG + chr7_1:62139300-62139319 None:intergenic 40.0%
CATTAACACAATTGCGGAGA+GGG + chr7_1:62139423-62139442 None:intergenic 40.0%
AGCATCGTAAGGATTTCTGA+TGG - chr7_1:62139639-62139658 Msa1028930:CDS 40.0%
AGCCTCTTAGAGTGAATTAG+AGG - chr7_1:62139693-62139712 Msa1028930:CDS 40.0%
CACCTCTAATTCACTCTAAG+AGG + chr7_1:62139698-62139717 None:intergenic 40.0%
CTTAGAGTGAATTAGAGGTG+AGG - chr7_1:62139698-62139717 Msa1028930:CDS 40.0%
TGTAAGATAATTTCGCGTCG+CGG + chr7_1:62139884-62139903 None:intergenic 40.0%
TACTAAAAAGTTGCAGTGGG+GGG - chr7_1:62139907-62139926 Msa1028930:CDS 40.0%
TTGCCACATTCTTTACCACA+GGG + chr7_1:62139947-62139966 None:intergenic 40.0%
TATGCCCCATTACGATTTAC+AGG - chr7_1:62140062-62140081 Msa1028930:five_prime_UTR 40.0%
ATGCCCCATTACGATTTACA+GGG - chr7_1:62140063-62140082 Msa1028930:five_prime_UTR 40.0%
CTACCCTGTAAATCGTAATG+GGG + chr7_1:62140069-62140088 None:intergenic 40.0%
! AGGTGTCACAATCATGTTGA+AGG - chr7_1:62140330-62140349 Msa1028930:five_prime_UTR 40.0%
TGATGACATGAAGCATGTGA+TGG + chr7_1:62140427-62140446 None:intergenic 40.0%
!! TGTTTAAAAGGGCACCCTAA+TGG - chr7_1:62140553-62140572 Msa1028930:five_prime_UTR 40.0%
!! GTTTAAAAGGGCACCCTAAT+GGG - chr7_1:62140554-62140573 Msa1028930:five_prime_UTR 40.0%
TGGTACACCAAAAAAGTCTC+GGG + chr7_1:62140615-62140634 None:intergenic 40.0%
! ATCACAGCAAGTTCTAGTGA+TGG + chr7_1:62140687-62140706 None:intergenic 40.0%
ATGAAAATGCACGCAAGATG+TGG - chr7_1:62140705-62140724 Msa1028930:five_prime_UTR 40.0%
TGCTCTGGTTAATATGCCAA+AGG - chr7_1:62140783-62140802 Msa1028930:five_prime_UTR 40.0%
TCAGCTTAAAGAGAGTCCTT+TGG + chr7_1:62140802-62140821 None:intergenic 40.0%
!!! TTTGGCGACAATTTTTGGTG+TGG - chr7_1:62140847-62140866 Msa1028930:five_prime_UTR 40.0%
! TGATGGGGCACTATAATTTC+AGG - chr7_1:62140990-62141009 Msa1028930:five_prime_UTR 40.0%
!! TCATGTGCTGATTATGTCCA+TGG - chr7_1:62141051-62141070 Msa1028930:five_prime_UTR 40.0%
TGACACTATTATCTGCTCCA+TGG + chr7_1:62141071-62141090 None:intergenic 40.0%
CATTCATCTTGCAGCTTCAA+TGG - chr7_1:62141089-62141108 Msa1028930:five_prime_UTR 40.0%
! GGGCTTCAATGTTGAGTTTT+GGG + chr7_1:62141175-62141194 None:intergenic 40.0%
! TGGGCTTCAATGTTGAGTTT+TGG + chr7_1:62141176-62141195 None:intergenic 40.0%
TGCAAATTGCCAATTTGCCA+CGG - chr7_1:62141299-62141318 Msa1028930:five_prime_UTR 40.0%
ACTGCAGTTTAGACTTGAGA+GGG + chr7_1:62141429-62141448 None:intergenic 40.0%
AACTGCAGTTTAGACTTGAG+AGG + chr7_1:62141430-62141449 None:intergenic 40.0%
CTTAACTATCCATCTCCATG+GGG - chr7_1:62141471-62141490 Msa1028930:five_prime_UTR 40.0%
TTAACTATCCATCTCCATGG+GGG - chr7_1:62141472-62141491 Msa1028930:five_prime_UTR 40.0%
AGACTTACTCTACAACAGCA+TGG - chr7_1:62141532-62141551 Msa1028930:five_prime_UTR 40.0%
!! TTGTGAAGGAGCATTGTCTT+TGG + chr7_1:62141627-62141646 None:intergenic 40.0%
GCTCCTTCACAAATAGCTTA+TGG - chr7_1:62141635-62141654 Msa1028930:five_prime_UTR 40.0%
TCTGTCCTTTGTTCTGATTC+TGG - chr7_1:62141721-62141740 Msa1028930:five_prime_UTR 40.0%
AGAAGCCAGAATCAGAACAA+AGG + chr7_1:62141729-62141748 None:intergenic 40.0%
AAGCATATACGTGTTCCAGT+TGG - chr7_1:62141896-62141915 Msa1028930:five_prime_UTR 40.0%
ACAGAAAATGTGTGACCAAC+TGG + chr7_1:62141914-62141933 None:intergenic 40.0%
TCTGACTTCAATAGAGAGCT+TGG - chr7_1:62141959-62141978 Msa1028930:five_prime_UTR 40.0%
CTGACTTCAATAGAGAGCTT+GGG - chr7_1:62141960-62141979 Msa1028930:five_prime_UTR 40.0%
TGACTTCAATAGAGAGCTTG+GGG - chr7_1:62141961-62141980 Msa1028930:five_prime_UTR 40.0%
GCATTCTCCTCTCATTCTAT+TGG + chr7_1:62142079-62142098 None:intergenic 40.0%
CATGAAATCAAGCATGTCCA+AGG + chr7_1:62142248-62142267 None:intergenic 40.0%
GGAGGTAATTATCAGCATTC+AGG + chr7_1:62142312-62142331 None:intergenic 40.0%
GCAGAACTCCTATCAGTAAA+CGG - chr7_1:62142716-62142735 Msa1028930:five_prime_UTR 40.0%
ACTTGCAAGGACAGTTATGA+TGG - chr7_1:62142799-62142818 Msa1028930:intron 40.0%
CTTGCAAGGACAGTTATGAT+GGG - chr7_1:62142800-62142819 Msa1028930:intron 40.0%
CAGGGTTACTCTTATAGCAT+TGG + chr7_1:62142909-62142928 None:intergenic 40.0%
ATTTCGGCTTCGTATAGTTG+TGG + chr7_1:62142959-62142978 None:intergenic 40.0%
CTCTTTAGCCCAAGGTAAAT+GGG + chr7_1:62142993-62143012 None:intergenic 40.0%
ACTCTTTAGCCCAAGGTAAA+TGG + chr7_1:62142994-62143013 None:intergenic 40.0%
CGAATTAACTCTTTAGCCCA+AGG + chr7_1:62143001-62143020 None:intergenic 40.0%
! GGAAGTGGACTTTCTATGTT+TGG - chr7_1:62143026-62143045 Msa1028930:intron 40.0%
TGTGTGACAAGAAAGATGAG+TGG + chr7_1:62143106-62143125 None:intergenic 40.0%
! TTTTAGTGAGCAAAGGGTGA+GGG - chr7_1:62143132-62143151 Msa1028930:intron 40.0%
ATTATCAGGAGATGAGAGTG+AGG - chr7_1:62143195-62143214 Msa1028930:intron 40.0%
AGAAAGACTATCCTGACACA+TGG - chr7_1:62143259-62143278 Msa1028930:intron 40.0%
GTTGGTGTGCCAGAAAATAT+TGG - chr7_1:62143286-62143305 Msa1028930:intron 40.0%
AGTAGTCGTCATGCTAATAC+TGG + chr7_1:62143320-62143339 None:intergenic 40.0%
ATCATCTTCAACAGCAACAC+TGG + chr7_1:62143356-62143375 None:intergenic 40.0%
TGCTGTTGAAGATGATGTTG+AGG - chr7_1:62143360-62143379 Msa1028930:intron 40.0%
CCCCGCTCAAAATTAACTGA+GGG + chr7_1:62138734-62138753 None:intergenic 45.0%
! CCCTCAGTTAATTTTGAGCG+GGG - chr7_1:62138731-62138750 Msa1028930:intron 45.0%
TCCCCGCTCAAAATTAACTG+AGG + chr7_1:62138735-62138754 None:intergenic 45.0%
CGGACCTATAGTTACGTTGA+AGG - chr7_1:62138809-62138828 Msa1028930:intron 45.0%
GGTGTTTGAAGACAATGTCC+TGG - chr7_1:62138830-62138849 Msa1028930:intron 45.0%
TGAAGACAATGTCCTGGTTC+GGG - chr7_1:62138836-62138855 Msa1028930:intron 45.0%
TTCCTCGAAGAGAAAGGCAA+TGG - chr7_1:62138861-62138880 Msa1028930:intron 45.0%
TTCCATTGCCTTTCTCTTCG+AGG + chr7_1:62138866-62138885 None:intergenic 45.0%
CAATATTGCACAGCGCAAAC+TGG + chr7_1:62138913-62138932 None:intergenic 45.0%
CAGTTTGCGCTGTGCAATAT+TGG - chr7_1:62138911-62138930 Msa1028930:intron 45.0%
TTGTTCTGTGCTTGCACTAC+AGG + chr7_1:62138945-62138964 None:intergenic 45.0%
GTAGTGCAAGCACAGAACAA+TGG - chr7_1:62138945-62138964 Msa1028930:intron 45.0%
TGCAAGCACAGAACAATGGA+TGG - chr7_1:62138949-62138968 Msa1028930:intron 45.0%
GCAAGCACAGAACAATGGAT+GGG - chr7_1:62138950-62138969 Msa1028930:intron 45.0%
TGGGCAGGTATCATTGTGAA+TGG - chr7_1:62138969-62138988 Msa1028930:intron 45.0%
CCTTGTCCCAGCAATAGTTA+TGG + chr7_1:62139102-62139121 None:intergenic 45.0%
CCATAACTATTGCTGGGACA+AGG - chr7_1:62139099-62139118 Msa1028930:intron 45.0%
ACTATTGCTGGGACAAGGAT+CGG - chr7_1:62139104-62139123 Msa1028930:intron 45.0%
TTGGCAGGCAAGACATATCA+TGG - chr7_1:62139228-62139247 Msa1028930:intron 45.0%
CCATTAACACAATTGCGGAG+AGG + chr7_1:62139424-62139443 None:intergenic 45.0%
CCTCTCCGCAATTGTGTTAA+TGG - chr7_1:62139421-62139440 Msa1028930:intron 45.0%
TTCCACATAGCAGCATCGTA+AGG - chr7_1:62139628-62139647 Msa1028930:CDS 45.0%
ATCCTTACGATGCTGCTATG+TGG + chr7_1:62139633-62139652 None:intergenic 45.0%
CGGGAAGATAGACTTTACAG+AGG + chr7_1:62139864-62139883 None:intergenic 45.0%
GTAAGATAATTTCGCGTCGC+GGG + chr7_1:62139883-62139902 None:intergenic 45.0%
ACTAAAAAGTTGCAGTGGGG+GGG - chr7_1:62139908-62139927 Msa1028930:CDS 45.0%
GTTGCCACATTCTTTACCAC+AGG + chr7_1:62139948-62139967 None:intergenic 45.0%
ATTGTGTGCTGAGAGTGACT+TGG - chr7_1:62140367-62140386 Msa1028930:five_prime_UTR 45.0%
AAGTGGTGCCTAAACCATGA+TGG + chr7_1:62140497-62140516 None:intergenic 45.0%
TGCACGCAAGATGTGGTAAA+TGG - chr7_1:62140712-62140731 Msa1028930:five_prime_UTR 45.0%
!!! GCCAAGTTGGCTTTTTCTCT+GGG + chr7_1:62141195-62141214 None:intergenic 45.0%
!!! AGCCAAGTTGGCTTTTTCTC+TGG + chr7_1:62141196-62141215 None:intergenic 45.0%
!!! GTCTTTTTGGTTTTCCCCCA+TGG + chr7_1:62141489-62141508 None:intergenic 45.0%
TAGAGTAAGTCTGCTGGTGT+AGG + chr7_1:62141524-62141543 None:intergenic 45.0%
CTGTTGTAGAGTAAGTCTGC+TGG + chr7_1:62141530-62141549 None:intergenic 45.0%
GTAGAAAGGGGAAAAGACAG+AGG + chr7_1:62141558-62141577 None:intergenic 45.0%
TCTGAGTCCTACCATCATGA+TGG - chr7_1:62141596-62141615 Msa1028930:five_prime_UTR 45.0%
CTGAGTCCTACCATCATGAT+GGG - chr7_1:62141597-62141616 Msa1028930:five_prime_UTR 45.0%
!! CTTTGGTTTGCCCATCATGA+TGG + chr7_1:62141610-62141629 None:intergenic 45.0%
!! TGTTCTGATTCTGGCTTCTG+TGG - chr7_1:62141730-62141749 Msa1028930:five_prime_UTR 45.0%
!!! AGTTGGGTTGGTTCGGTTTT+GGG - chr7_1:62141757-62141776 Msa1028930:five_prime_UTR 45.0%
GTCAGATTCAGGCATCAAGA+GGG + chr7_1:62141945-62141964 None:intergenic 45.0%
AGTCAGATTCAGGCATCAAG+AGG + chr7_1:62141946-62141965 None:intergenic 45.0%
TTTCATTCGGATGGACATGC+AGG - chr7_1:62142201-62142220 Msa1028930:five_prime_UTR 45.0%
ACCTCCTGAGTAATGTGTCA+AGG - chr7_1:62142326-62142345 Msa1028930:five_prime_UTR 45.0%
CCTCCTGAGTAATGTGTCAA+GGG - chr7_1:62142327-62142346 Msa1028930:five_prime_UTR 45.0%
GTTCCCTTGACACATTACTC+AGG + chr7_1:62142333-62142352 None:intergenic 45.0%
CAAGCCAACCATGCATGTTA+AGG - chr7_1:62142756-62142775 Msa1028930:intron 45.0%
GGAACCTTAACATGCATGGT+TGG + chr7_1:62142763-62142782 None:intergenic 45.0%
CTTCGGAACCTTAACATGCA+TGG + chr7_1:62142767-62142786 None:intergenic 45.0%
CAAGTCGAATTGGTGAGCTT+CGG + chr7_1:62142784-62142803 None:intergenic 45.0%
ACTGTCCTTGCAAGTCGAAT+TGG + chr7_1:62142794-62142813 None:intergenic 45.0%
!! AGTTATGATGGGTGTGCCAT+TGG - chr7_1:62142811-62142830 Msa1028930:intron 45.0%
AGAGATGAAGTTCCTGCTCT+TGG + chr7_1:62142935-62142954 None:intergenic 45.0%
! CTTTTAGTGAGCAAAGGGTG+AGG - chr7_1:62143131-62143150 Msa1028930:intron 45.0%
GTGAGGTTTCTGAGTTGTTG+AGG - chr7_1:62143212-62143231 Msa1028930:intron 45.0%
! ATCCTGACACATGGTAGTGT+TGG - chr7_1:62143268-62143287 Msa1028930:intron 45.0%
TGTGCCAGAAAATATTGGCG+AGG - chr7_1:62143291-62143310 Msa1028930:intron 45.0%
! GAAGCCTCGCCAATATTTTC+TGG + chr7_1:62143298-62143317 None:intergenic 45.0%
GACTCTGAATCAGTGTGCAT+AGG - chr7_1:62143382-62143401 Msa1028930:intron 45.0%
CTAAGCTGTGCCTGTATCTA+TGG - chr7_1:62143511-62143530 Msa1028930:five_prime_UTR 45.0%
!! AATTAATAAAAATTAATAAG+AGG + chr7_1:62141403-62141422 None:intergenic 5.0%
AGGGTTCGCATCACACACTT+CGG + chr7_1:62138715-62138734 None:intergenic 50.0%
! GGTCGAAGACAGGTCTTTTC+CGG - chr7_1:62138789-62138808 Msa1028930:intron 50.0%
!! CAATGGAAGAGTGCTCGTTG+TGG - chr7_1:62138878-62138897 Msa1028930:intron 50.0%
!! GAAGAGTGCTCGTTGTGGAT+GGG - chr7_1:62138883-62138902 Msa1028930:intron 50.0%
!! AAGAGTGCTCGTTGTGGATG+GGG - chr7_1:62138884-62138903 Msa1028930:intron 50.0%
TTGCGCTGTGCAATATTGGG+TGG - chr7_1:62138915-62138934 Msa1028930:intron 50.0%
GATATTGGGGTGAGAGCTCT+TGG - chr7_1:62139026-62139045 Msa1028930:intron 50.0%
!! TGGCTTTATGCAGACACCGA+TGG - chr7_1:62139137-62139156 Msa1028930:intron 50.0%
TGGCCCTGTGGTAAAGAATG+TGG - chr7_1:62139941-62139960 Msa1028930:exon 50.0%
TGAAGGGCAGCCATTGTTGT+CGG - chr7_1:62140134-62140153 Msa1028930:five_prime_UTR 50.0%
AGCTGCACAACCGACAACAA+TGG + chr7_1:62140147-62140166 None:intergenic 50.0%
ATCAGGCACGAGACATGCTT+GGG + chr7_1:62140178-62140197 None:intergenic 50.0%
AATCAGGCACGAGACATGCT+TGG + chr7_1:62140179-62140198 None:intergenic 50.0%
TGCATGACAAGCTTGCAGTC+TGG - chr7_1:62140657-62140676 Msa1028930:five_prime_UTR 50.0%
GCCCAGAGAAAAAGCCAACT+TGG - chr7_1:62141191-62141210 Msa1028930:five_prime_UTR 50.0%
GTCTAGCACTCTAGCCAAGT+TGG + chr7_1:62141208-62141227 None:intergenic 50.0%
ACCAAGATGCCGTGGCAAAT+TGG + chr7_1:62141311-62141330 None:intergenic 50.0%
AGAACAAGACCAAGATGCCG+TGG + chr7_1:62141319-62141338 None:intergenic 50.0%
! TGCAGTGTTGTTGCATGCTG+TGG + chr7_1:62141369-62141388 None:intergenic 50.0%
!! TTGGTTTTCCCCCATGGAGA+TGG + chr7_1:62141483-62141502 None:intergenic 50.0%
GGTTTGCCCATCATGATGGT+AGG + chr7_1:62141606-62141625 None:intergenic 50.0%
!! TCTGATTCTGGCTTCTGTGG+TGG - chr7_1:62141733-62141752 Msa1028930:five_prime_UTR 50.0%
!! CTGATTCTGGCTTCTGTGGT+GGG - chr7_1:62141734-62141753 Msa1028930:five_prime_UTR 50.0%
!!! GAGTTGGGTTGGTTCGGTTT+TGG - chr7_1:62141756-62141775 Msa1028930:five_prime_UTR 50.0%
! ATGGTGGAGTTAGTGCTGCT+TGG - chr7_1:62141858-62141877 Msa1028930:five_prime_UTR 50.0%
!! TGGTGGAGTTAGTGCTGCTT+GGG - chr7_1:62141859-62141878 Msa1028930:five_prime_UTR 50.0%
! TAGAGAGCTTGGGGTGTTTC+AGG - chr7_1:62141970-62141989 Msa1028930:five_prime_UTR 50.0%
CCCTTGACACATTACTCAGG+AGG + chr7_1:62142330-62142349 None:intergenic 50.0%
! GCTCACCAATTCGACTTGCA+AGG - chr7_1:62142786-62142805 Msa1028930:intron 50.0%
AGTTCCTGCTCTTGGATGCA+GGG + chr7_1:62142927-62142946 None:intergenic 50.0%
AAGTTCCTGCTCTTGGATGC+AGG + chr7_1:62142928-62142947 None:intergenic 50.0%
CACCAACACTACCATGTGTC+AGG + chr7_1:62143273-62143292 None:intergenic 50.0%
CGGGAGTTCCTCGAAGAGAA+AGG - chr7_1:62138855-62138874 Msa1028930:intron 55.0%
!! GGAAGAGTGCTCGTTGTGGA+TGG - chr7_1:62138882-62138901 Msa1028930:intron 55.0%
! AGAGTGCTCGTTGTGGATGG+GGG - chr7_1:62138885-62138904 Msa1028930:intron 55.0%
GCACAGAACAATGGATGGGC+AGG - chr7_1:62138954-62138973 Msa1028930:intron 55.0%
CTGGGACAAGGATCGGTGAT+GGG - chr7_1:62139111-62139130 Msa1028930:intron 55.0%
TGGGACAAGGATCGGTGATG+GGG - chr7_1:62139112-62139131 Msa1028930:intron 55.0%
!! CAAGGATCGGTGATGGGGAA+TGG - chr7_1:62139117-62139136 Msa1028930:intron 55.0%
AAAAAGTTGCAGTGGGGGGG+AGG - chr7_1:62139911-62139930 Msa1028930:CDS 55.0%
AAAAGTTGCAGTGGGGGGGA+GGG - chr7_1:62139912-62139931 Msa1028930:CDS 55.0%
GCCAATTTGCCACGGCATCT+TGG - chr7_1:62141307-62141326 Msa1028930:five_prime_UTR 55.0%
! TGGCTTCTGTGGTGGGAGTT+GGG - chr7_1:62141741-62141760 Msa1028930:five_prime_UTR 55.0%
! TTCTGTGGTGGGAGTTGGGT+TGG - chr7_1:62141745-62141764 Msa1028930:five_prime_UTR 55.0%
!! TGGTGGGAGTTGGGTTGGTT+CGG - chr7_1:62141750-62141769 Msa1028930:five_prime_UTR 55.0%
!!! TGGGTTGGTTCGGTTTTGGG+TGG - chr7_1:62141760-62141779 Msa1028930:five_prime_UTR 55.0%
!!! GTTGGTTCGGTTTTGGGTGG+AGG - chr7_1:62141763-62141782 Msa1028930:five_prime_UTR 55.0%
!! GGTGGAGTTAGTGCTGCTTG+GGG - chr7_1:62141860-62141879 Msa1028930:five_prime_UTR 55.0%
GTAACCCTGCATCCAAGAGC+AGG - chr7_1:62142920-62142939 Msa1028930:intron 55.0%
CTGTGCATGCAAAGCGCACC+TGG + chr7_1:62138416-62138435 None:intergenic 60.0%
CTTCGAGGAACTCCCGAACC+AGG + chr7_1:62138851-62138870 None:intergenic 60.0%
GCTGGGACAAGGATCGGTGA+TGG - chr7_1:62139110-62139129 Msa1028930:intron 60.0%
AAAGTTGCAGTGGGGGGGAG+GGG - chr7_1:62139913-62139932 Msa1028930:CDS 60.0%
! CTGGCTTCTGTGGTGGGAGT+TGG - chr7_1:62141740-62141759 Msa1028930:five_prime_UTR 60.0%
AAGTTGCAGTGGGGGGGAGG+GGG - chr7_1:62139914-62139933 Msa1028930:CDS 65.0%
AGTTGCAGTGGGGGGGAGGG+GGG - chr7_1:62139915-62139934 Msa1028930:CDS 70.0%
AGTGGGGGGGAGGGGGGATT+TGG - chr7_1:62139921-62139940 Msa1028930:CDS 70.0%
GGAGGGGGGATTTGGCCCTG+TGG - chr7_1:62139929-62139948 Msa1028930:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 62137838 62143598 62137838 ID=Msa1028930;Name=Msa1028930
chr7_1 mRNA 62137838 62143598 62137838 ID=Msa1028930-mRNA-1;Parent=Msa1028930;Name=Msa1028930-mRNA-1;_AED=0.00;_eAED=0.00;_QI=2996|1|1|1|0.5|0.33|3|190|400
chr7_1 exon 62137838 62138726 62137838 ID=Msa1028930-mRNA-1:exon:13196;Parent=Msa1028930-mRNA-1
chr7_1 exon 62139445 62142758 62139445 ID=Msa1028930-mRNA-1:exon:13195;Parent=Msa1028930-mRNA-1
chr7_1 exon 62143413 62143598 62143413 ID=Msa1028930-mRNA-1:exon:13194;Parent=Msa1028930-mRNA-1
chr7_1 five_prime_UTR 62143413 62143598 62143413 ID=Msa1028930-mRNA-1:five_prime_utr;Parent=Msa1028930-mRNA-1
chr7_1 five_prime_UTR 62139949 62142758 62139949 ID=Msa1028930-mRNA-1:five_prime_utr;Parent=Msa1028930-mRNA-1
chr7_1 CDS 62139445 62139948 62139445 ID=Msa1028930-mRNA-1:cds;Parent=Msa1028930-mRNA-1
chr7_1 CDS 62138028 62138726 62138028 ID=Msa1028930-mRNA-1:cds;Parent=Msa1028930-mRNA-1
chr7_1 three_prime_UTR 62137838 62138027 62137838 ID=Msa1028930-mRNA-1:three_prime_utr;Parent=Msa1028930-mRNA-1
Gene Sequence

>Msa1028930

ATGGGGGAAAACCAAAAAGACTCATTTGTTTTGCCTACACCAGCAGACTTACTCTACAACAGCATGGCCTCTGTCTTTTCCCCTTTCTACTCTCTTTTGACAGTGACATCTGAGTCCTACCATCATGATGGGCAAACCAAAGACAATGCTCCTTCACAAATAGCTTATGGTAGCATAGTTTTGCTTAAGAAACTGGGACTTTGTTTTCTGAGTGCTGCATATGTGTGTATGATTCTGTCCTTTGTTCTGATTCTGGCTTCTGTGGTGGGAGTTGGGTTGGTTCGGTTTTGGGTGGAGGAACCTGTCATTGTTAATGAAAGTTTGTATTTTGATTACACTGATGCTCATCCTACAGCTGTATTTTCATTTAATGGTGGAGTTAGTGCTGCTTGGGGTTATATTAATAAAAAGCATATACGTGTTCCAGTTGGTCACACATTTTCTGTTTCTTTGTCCCTCTTGATGCCTGAATCTGACTTCAATAGAGAGCTTGGGGTGTTTCAGCTGACAGCAGAACTCCTATCAGTAAACGGAAATGTGATAGCAAAATCAAGCCAACCATGCATGTTAAGGTTCCGAAGCTCACCAATTCGACTTGCAAGGACAGTTATGATGGGTGTGCCATTGGTGCTAGGAATCTCAGCTGAGACTCAGAAAATCAATGTAGAAATATTGAGGCACAAGGAACAAAATCAAAGAACCAATGCTATAAGAGTAACCCTGCATCCAAGAGCAGGAACTTCATCTCTTCCACAACTATACGAAGCCGAAATTGTTATAAACTCCCATTTACCTTGGGCTAAAGAGTTAATTCGGAATTGGAAGTGGACTTTCTATGTTTGGGTGTCATTATATGTGTACATTGTGCTACTTATGCTTCTCTTATATTGTTACAGGCCACTCATCTTTCTTGTCACACAAGATACTTTTAGTGAGCAAAGGGTGAGGGAAGTGATATGTGAAGAACATAAAGAATTACAACTTGGAGAATTATCAGGAGATGAGAGTGAGGTTTCTGAGTTGTTGAGGAAATGGAGACTCAGCAGAAGCAAGAGAAAGACTATCCTGACACATGGTAGTGTTGGTGTGCCAGAAAATATTGGCGAGGCTTCCAGTATTAGCATGACGACTACTAGAGAAGATGTAACCAGTGTTGCTGTTGAAGATGATGTTGAGGACTCTGAATCAGTGTGCATAGGTTAA
Protein sequence

>Msa1028930

MGENQKDSFVLPTPADLLYNSMASVFSPFYSLLTVTSESYHHDGQTKDNAPSQIAYGSIVLLKKLGLCFLSAAYVCMILSFVLILASVVGVGLVRFWVEEPVIVNESLYFDYTDAHPTAVFSFNGGVSAAWGYINKKHIRVPVGHTFSVSLSLLMPESDFNRELGVFQLTAELLSVNGNVIAKSSQPCMLRFRSSPIRLARTVMMGVPLVLGISAETQKINVEILRHKEQNQRTNAIRVTLHPRAGTSSLPQLYEAEIVINSHLPWAKELIRNWKWTFYVWVSLYVYIVLLMLLLYCYRPLIFLVTQDTFSEQRVREVICEEHKELQLGELSGDESEVSELLRKWRLSRSKRKTILTHGSVGVPENIGEASSISMTTTREDVTSVAVEDDVEDSESVCIG*