AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1032230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1032230 MtrunA17_Chr7g0254161 96.009 426 15 1 1 426 1 424 0.0 850
Msa1032230 MtrunA17_Chr6g0460731 50.535 374 138 9 8 350 10 367 4.28e-106 318
Msa1032230 MtrunA17_Chr6g0460721 47.230 343 142 9 8 335 10 328 8.50e-93 283
Msa1032230 MtrunA17_Chr6g0453321 35.000 500 223 18 3 425 1 475 4.54e-64 214
Msa1032230 MtrunA17_Chr4g0042481 32.323 495 230 17 3 424 1 463 1.16e-54 188
Msa1032230 MtrunA17_Chr7g0217581 36.036 444 203 15 38 425 164 582 2.63e-54 189
Msa1032230 MtrunA17_Chr8g0355261 32.770 473 226 14 5 426 8 439 4.62e-54 186
Msa1032230 MtrunA17_Chr3g0092111 34.078 358 188 8 83 421 116 444 1.76e-49 174
Msa1032230 MtrunA17_Chr2g0283811 56.000 100 37 1 97 196 41 133 4.98e-32 119
Msa1032230 MtrunA17_Chr5g0417571 65.116 86 24 1 86 165 121 206 1.14e-31 123
Msa1032230 MtrunA17_Chr5g0417551 31.594 345 127 15 97 426 121 371 3.24e-31 122
Msa1032230 MtrunA17_Chr5g0417561 30.117 342 136 11 97 426 113 363 1.04e-30 121
Msa1032230 MtrunA17_Chr5g0417601 69.014 71 22 0 86 156 123 193 2.96e-28 114
Msa1032230 MtrunA17_Chr8g0367161 51.807 83 39 1 77 158 5 87 7.93e-25 104
Msa1032230 MtrunA17_Chr3g0127201 55.556 81 30 1 77 157 7 81 8.02e-25 103
Msa1032230 MtrunA17_Chr8g0346551 61.905 63 24 0 98 160 19 81 9.85e-25 102
Msa1032230 MtrunA17_Chr8g0374251 57.534 73 31 0 103 175 68 140 1.82e-24 103
Msa1032230 MtrunA17_Chr8g0374111 38.462 130 55 3 58 187 3 107 6.03e-24 99.4
Msa1032230 MtrunA17_Chr4g0010151 65.517 58 20 0 99 156 78 135 6.48e-24 102
Msa1032230 MtrunA17_Chr2g0308011 73.469 49 13 0 103 151 37 85 6.70e-24 99.0
Msa1032230 MtrunA17_Chr2g0326001 66.102 59 20 0 98 156 35 93 1.20e-23 100
Msa1032230 MtrunA17_Chr2g0328021 56.000 75 33 0 82 156 41 115 1.75e-23 99.8
Msa1032230 MtrunA17_Chr4g0031411 37.903 124 74 2 90 211 60 182 2.69e-23 100
Msa1032230 MtrunA17_Chr4g0047001 70.909 55 16 0 104 158 56 110 3.64e-23 100
Msa1032230 MtrunA17_Chr8g0341671 69.231 52 16 0 103 154 20 71 4.91e-23 96.7
Msa1032230 MtrunA17_Chr4g0061761 67.925 53 17 0 101 153 38 90 6.74e-23 98.6
Msa1032230 MtrunA17_Chr4g0030051 62.121 66 24 1 91 155 28 93 1.95e-22 96.7
Msa1032230 MtrunA17_Chr1g0188851 51.899 79 33 1 82 155 17 95 2.16e-22 96.7
Msa1032230 MtrunA17_Chr2g0282441 59.375 64 26 0 91 154 13 76 2.86e-22 97.1
Msa1032230 MtrunA17_Chr7g0237921 38.760 129 66 2 91 217 62 179 3.16e-22 97.1
Msa1032230 MtrunA17_Chr7g0223311 69.091 55 16 1 104 157 78 132 2.04e-21 95.1
Msa1032230 MtrunA17_Chr5g0411951 65.455 55 19 0 99 153 39 93 2.06e-21 94.7
Msa1032230 MtrunA17_Chr2g0282051 67.857 56 17 1 103 158 46 100 2.48e-21 93.2
Msa1032230 MtrunA17_Chr3g0126201 67.308 52 17 0 105 156 53 104 3.94e-21 93.6
Msa1032230 MtrunA17_Chr2g0282511 69.388 49 15 0 103 151 45 93 6.54e-21 92.8
Msa1032230 MtrunA17_Chr1g0177251 67.308 52 17 0 105 156 14 65 7.25e-21 92.0
Msa1032230 MtrunA17_Chr4g0047761 66.071 56 18 1 103 158 72 126 7.95e-21 92.8
Msa1032230 MtrunA17_Chr3g0117601 58.065 62 25 1 93 153 50 111 2.39e-20 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1032230 AT5G39660.3 36.828 372 177 14 40 393 77 408 4.86e-53 184
Msa1032230 AT5G39660.1 36.828 372 177 14 40 393 77 408 4.86e-53 184
Msa1032230 AT5G39660.2 36.828 372 177 14 40 393 77 408 4.86e-53 184
Msa1032230 AT3G47500.1 31.959 485 231 16 3 426 2 448 5.49e-50 176
Msa1032230 AT5G62430.1 36.462 277 80 8 3 277 1 183 1.12e-37 139
Msa1032230 AT1G26790.1 45.238 168 85 4 8 169 11 177 5.31e-34 130
Msa1032230 AT1G29160.1 81.667 60 11 0 97 156 56 115 8.99e-33 122
Msa1032230 AT2G34140.1 64.198 81 29 0 97 177 52 132 1.53e-32 121
Msa1032230 AT1G69570.1 65.823 79 27 0 91 169 120 198 4.20e-32 126
Msa1032230 AT3G55370.1 57.143 70 30 0 99 168 72 141 9.36e-25 104
Msa1032230 AT3G55370.2 57.143 70 30 0 99 168 72 141 1.21e-24 104
Msa1032230 AT3G55370.3 57.143 70 30 0 99 168 117 186 1.88e-24 104
Msa1032230 AT5G60850.1 54.762 84 32 2 103 186 51 128 2.90e-24 102
Msa1032230 AT5G60200.1 56.338 71 31 0 99 169 51 121 4.56e-24 100
Msa1032230 AT1G51700.1 69.231 52 16 0 103 154 33 84 5.51e-24 99.0
Msa1032230 AT4G24060.1 44.444 117 60 2 100 214 50 163 1.31e-23 101
Msa1032230 AT3G61850.2 64.407 59 21 0 98 156 57 115 1.67e-23 100
Msa1032230 AT3G61850.3 64.407 59 21 0 98 156 57 115 1.67e-23 100
Msa1032230 AT3G61850.1 64.407 59 21 0 98 156 69 127 2.24e-23 99.8
Msa1032230 AT3G61850.5 64.407 59 21 0 98 156 57 115 2.60e-23 100
Msa1032230 AT2G28810.2 66.071 56 19 0 99 154 73 128 3.12e-23 100
Msa1032230 AT3G61850.4 64.407 59 21 0 98 156 69 127 3.39e-23 100
Msa1032230 AT3G21270.1 69.811 53 16 0 103 155 29 81 3.54e-23 97.1
Msa1032230 AT2G28810.1 66.071 56 19 0 99 154 90 145 5.35e-23 99.8
Msa1032230 AT2G37590.1 63.793 58 21 0 99 156 85 142 6.33e-23 99.4
Msa1032230 AT3G45610.1 52.857 70 33 0 99 168 36 105 6.40e-23 97.4
Msa1032230 AT1G07640.1 69.091 55 16 1 103 156 21 75 1.24e-22 97.4
Msa1032230 AT1G07640.2 69.091 55 16 1 103 156 77 131 1.73e-22 98.2
Msa1032230 AT1G28310.1 68.519 54 17 0 103 156 27 80 2.23e-22 97.4
Msa1032230 AT4G00940.1 56.944 72 27 1 91 158 52 123 2.29e-22 97.1
Msa1032230 AT4G00940.3 56.944 72 27 1 91 158 52 123 2.29e-22 97.1
Msa1032230 AT4G00940.2 56.944 72 27 1 91 158 52 123 2.29e-22 97.1
Msa1032230 AT1G07640.3 69.091 55 16 1 103 156 85 139 2.51e-22 97.8
Msa1032230 AT5G65590.1 70.370 54 16 0 103 156 41 94 2.65e-22 97.4
Msa1032230 AT1G28310.2 68.519 54 17 0 103 156 51 104 3.14e-22 97.4
Msa1032230 AT5G02460.1 44.898 98 53 1 99 195 91 188 4.41e-22 97.8
Msa1032230 AT1G64620.1 65.385 52 18 0 100 151 46 97 6.31e-22 96.7
Msa1032230 AT3G50410.1 70.588 51 15 0 105 155 32 82 6.58e-22 94.7
Msa1032230 AT4G38000.1 66.071 56 18 1 102 156 40 95 7.86e-22 94.4
Msa1032230 AT5G66940.1 50.000 80 33 1 90 169 26 98 8.36e-22 94.0
Msa1032230 AT2G28510.1 66.071 56 19 0 105 160 50 105 1.63e-21 94.4
Msa1032230 AT4G21050.1 40.800 125 59 3 76 198 4 115 2.74e-21 92.0
Msa1032230 AT2G46590.1 62.264 53 20 0 98 150 63 115 1.27e-20 93.2
Msa1032230 AT3G52440.1 65.385 52 18 0 105 156 27 78 1.37e-20 90.9
Msa1032230 AT3G52440.2 65.385 52 18 0 105 156 46 97 1.53e-20 91.3
Msa1032230 AT2G46590.2 62.264 53 20 0 98 150 75 127 1.58e-20 92.8
Msa1032230 AT1G21340.1 66.000 50 17 0 105 154 40 89 3.34e-20 90.1
Msa1032230 AT1G47655.1 70.213 47 14 0 105 151 31 77 3.55e-20 89.0
Msa1032230 AT5G62940.1 57.812 64 26 1 91 153 60 123 9.11e-20 90.9
Msa1032230 AT4G21040.1 63.462 52 19 0 105 156 27 78 7.21e-18 82.8
Msa1032230 AT4G21080.1 57.895 57 24 0 105 161 27 83 2.65e-17 81.6
Msa1032230 AT4G21030.1 59.091 44 18 0 105 148 23 66 2.78e-11 62.8

Find 116 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCTTCATTAGGCTTCT+TGG 0.163517 7_1:-67170627 None:intergenic
TTTGGGTGGCTCTCAGATTT+TGG 0.205376 7_1:+67170661 Msa1032230:CDS
GATCATGGTATTATGCTATT+TGG 0.221788 7_1:+67168438 Msa1032230:CDS
AACGAGACTGTATTGAAATT+TGG 0.235896 7_1:+67170029 Msa1032230:CDS
TGTCCAATTCCGGCCAATTC+TGG 0.261036 7_1:+67168483 Msa1032230:CDS
AAAATTATTATATGCTTTCC+TGG 0.315121 7_1:-67170721 None:intergenic
GTGGGCTTGGAATTTACTAT+TGG 0.321756 7_1:-67169675 None:intergenic
GGTCCAGAATTGGCCGGAAT+TGG 0.321957 7_1:-67168486 None:intergenic
CGTGTTATCTTCGGTGGGCT+TGG 0.325634 7_1:-67169688 None:intergenic
TATCTCTATTGTGCTTTCCT+AGG 0.342762 7_1:-67170493 None:intergenic
GCTATTTGGTTGGAAGATTC+CGG 0.345460 7_1:+67168452 Msa1032230:CDS
GATTCGCAAAGAGGGGTATC+AGG 0.380348 7_1:-67170053 None:intergenic
GCAAGAACTGCCAAAGGTAT+TGG 0.383831 7_1:+67169844 Msa1032230:CDS
AGAAGGAAAAGACGGTGTTT+TGG 0.384688 7_1:+67170643 Msa1032230:CDS
ACACCTATGTTGGCAATTCC+AGG 0.386307 7_1:+67170347 Msa1032230:CDS
CAGAACACAATGCATCAAAT+TGG 0.395828 7_1:+67170213 Msa1032230:CDS
TTTATCTTGATCCGTATTAC+CGG 0.399758 7_1:-67169715 None:intergenic
GGTAGTACCCATGGAGAAAC+AGG 0.400241 7_1:-67170248 None:intergenic
TTGGAATAATGTTGCTTCAA+TGG 0.402306 7_1:+67170283 Msa1032230:CDS
TTATTCCAACCTGGATTCAT+TGG 0.406197 7_1:-67170269 None:intergenic
AGACAATTCTTCTGATTCAA+TGG 0.409932 7_1:+67169620 Msa1032230:CDS
TTGGCCGGAATTGGACATTC+CGG 0.413804 7_1:-67168477 None:intergenic
CACCAGCAGTCCAATACCTT+TGG 0.414239 7_1:-67169854 None:intergenic
TCGTGGTTACTATAATTTGC+CGG 0.419212 7_1:-67169941 None:intergenic
ACAAGTAACAGTTGCTGCTC+AGG 0.422483 7_1:+67170455 Msa1032230:CDS
GGACACTGAACAATCTTGTC+TGG 0.427093 7_1:-67169750 None:intergenic
AACAGTTGCTGCTCAGGAAA+TGG 0.428682 7_1:+67170461 Msa1032230:CDS
ATCTCTATTGTGCTTTCCTA+GGG 0.433575 7_1:-67170492 None:intergenic
CTATTGTGCTTTCCTAGGGT+TGG 0.437965 7_1:-67170488 None:intergenic
TAAAACAGACAAGTGTGTTC+CGG 0.446244 7_1:+67170535 Msa1032230:CDS
CAGTCTCGAAAAGTCCTATC+CGG 0.447133 7_1:+67170591 Msa1032230:CDS
ATGTACCATGGGTCCAGAAT+TGG 0.447645 7_1:-67168496 None:intergenic
ACCGGTCTCCGTGTTATCTT+CGG 0.448248 7_1:-67169697 None:intergenic
TTCCGATAGGTGCTGGGAGG+CGG 0.450898 7_1:+67169892 Msa1032230:CDS
AGAAATGTTCCGATAGGTGC+TGG 0.459160 7_1:+67169885 Msa1032230:CDS
GTAACAAACACTGGCAATCA+AGG 0.459236 7_1:+67170179 Msa1032230:CDS
ATGGTATTATGCTATTTGGT+TGG 0.461686 7_1:+67168442 Msa1032230:CDS
TGGTTGGAAGATTCCGGTGC+CGG 0.462466 7_1:+67168458 Msa1032230:CDS
TACCCCTCTTTGCGAATCAA+TGG 0.468240 7_1:+67170058 Msa1032230:CDS
ACAAGAGTCTATACCAGAAA+AGG 0.468668 7_1:+67169650 Msa1032230:CDS
TAACACGGAGACCGGTAATA+CGG 0.475853 7_1:+67169704 Msa1032230:CDS
GGTGCCGGAATGTCCAATTC+CGG 0.477329 7_1:+67168473 Msa1032230:CDS
GTGTTATCCTGTTTCTCCAT+GGG 0.479488 7_1:+67170241 Msa1032230:CDS
AGGATACTTGCAGCAGTACA+AGG 0.490268 7_1:+67169553 Msa1032230:intron
AGTGTTATCCTGTTTCTCCA+TGG 0.495037 7_1:+67170240 Msa1032230:CDS
GGAATTGGACATTCCGGCAC+CGG 0.499395 7_1:-67168471 None:intergenic
TGCCAAAGGTATTGGACTGC+TGG 0.503181 7_1:+67169852 Msa1032230:CDS
ACCAAGAAGCCTAATGAAGA+AGG 0.504636 7_1:+67170626 Msa1032230:CDS
GTCTCCGTGTTATCTTCGGT+GGG 0.507024 7_1:-67169693 None:intergenic
AGAAGAATTGTCTTGTTGCT+CGG 0.510082 7_1:-67169610 None:intergenic
AGCACCTAGCCTCTCAATAC+CGG 0.512664 7_1:+67169922 Msa1032230:CDS
CGTGGTTGGAACTCCATTCG+TGG 0.513560 7_1:-67169958 None:intergenic
TTCTCATGCTCATACAATCC+AGG 0.520401 7_1:+67170703 Msa1032230:CDS
CAATACAGTCTCGTTATCCA+TGG 0.528405 7_1:-67170021 None:intergenic
TTCCGCCTCCCAGCACCTAT+CGG 0.529039 7_1:-67169894 None:intergenic
GTAGTTTCTAGCCTCGTGGT+TGG 0.531644 7_1:-67169972 None:intergenic
TATAATTTGCCGGTATTGAG+AGG 0.538214 7_1:-67169931 None:intergenic
ACCGAAGATAACACGGAGAC+CGG 0.539518 7_1:+67169696 Msa1032230:CDS
GGAATTGCCAACATAGGTGT+TGG 0.540068 7_1:-67170344 None:intergenic
GTGTCCGCGATGCAACAGTT+GGG 0.540349 7_1:+67169767 Msa1032230:CDS
GTTGTTGAAATAACAAAACT+TGG 0.540457 7_1:-67169793 None:intergenic
ATTCCATTGATTCGCAAAGA+GGG 0.549386 7_1:-67170061 None:intergenic
CGATCACCACCACACATCCA+TGG 0.550071 7_1:+67170004 Msa1032230:CDS
GGATTCATTGGTAGTACCCA+TGG 0.554215 7_1:-67170257 None:intergenic
GTAGCTAATGTAGCCCGGAT+AGG 0.554980 7_1:-67170605 None:intergenic
GGTCTCCGTGTTATCTTCGG+TGG 0.555105 7_1:-67169694 None:intergenic
ATGAGAAATAGCTCCTGAGC+TGG 0.556629 7_1:-67170687 None:intergenic
CATGGATGTGTGGTGGTGAT+CGG 0.559985 7_1:-67170003 None:intergenic
GGAAATGGCTCACCAACCCT+AGG 0.561749 7_1:+67170476 Msa1032230:CDS
TCTGAGACTGAGAAGGATCA+TGG 0.563095 7_1:+67168423 Msa1032230:CDS
CAGTTCTTGCAGAAATGTCG+AGG 0.563164 7_1:-67169831 None:intergenic
GGCAGCAATTCATCCGACTT+CGG 0.564105 7_1:+67170304 Msa1032230:CDS
CGACTTCGGCATCCATGCAA+TGG 0.568776 7_1:+67170318 Msa1032230:CDS
TCTTGGTAGCTAATGTAGCC+CGG 0.573000 7_1:-67170610 None:intergenic
AACTTGTAGCAGCATCACAT+TGG 0.575411 7_1:+67170396 Msa1032230:CDS
AGTGTCCGCGATGCAACAGT+TGG 0.576096 7_1:+67169766 Msa1032230:CDS
GATTCCATTGATTCGCAAAG+AGG 0.579861 7_1:-67170062 None:intergenic
CAAATTATAGTAACCACGAA+TGG 0.580675 7_1:+67169945 Msa1032230:CDS
TCCGGCCAATTCTGGACCCA+TGG 0.581876 7_1:+67168491 Msa1032230:CDS
GCAGCAACTGTTACTTGTAG+AGG 0.584099 7_1:-67170450 None:intergenic
TGGGTACTACCAATGAATCC+AGG 0.586175 7_1:+67170260 Msa1032230:CDS
CATTGCATGGATGCCGAAGT+CGG 0.595329 7_1:-67170317 None:intergenic
AGTCTCGAAAAGTCCTATCC+GGG 0.597281 7_1:+67170592 Msa1032230:CDS
ATTCCTGGAATTGCCAACAT+AGG 0.597632 7_1:-67170350 None:intergenic
AGAGAGGAACCGTCCTTGTG+TGG 0.598119 7_1:+67170149 Msa1032230:CDS
TACTACCAATGAATCCAGGT+TGG 0.601762 7_1:+67170264 Msa1032230:CDS
CAGTTCTGTGCAACATAGAG+AGG 0.603480 7_1:+67170133 Msa1032230:CDS
GGATCTTCTGTAACAAACAC+TGG 0.604848 7_1:+67170170 Msa1032230:CDS
TTCCATTGATTCGCAAAGAG+GGG 0.609139 7_1:-67170060 None:intergenic
CCTAATGAAGAAGGAAAAGA+CGG 0.611817 7_1:+67170635 Msa1032230:CDS
GAAATGTTCCGATAGGTGCT+GGG 0.612734 7_1:+67169886 Msa1032230:CDS
GGCGGCGAGAGGCAAAGTGA+TGG 0.613227 7_1:-67170425 None:intergenic
GATGCTGCTACAAGTTGTAA+AGG 0.617256 7_1:-67170389 None:intergenic
CAGTACAAGGAAAACAGAAG+TGG 0.617838 7_1:+67169566 Msa1032230:CDS
GAACATGTCTGAGACTGAGA+AGG 0.619721 7_1:+67168416 Msa1032230:CDS
GAAGCAACATTATTCCAACC+TGG 0.621410 7_1:-67170278 None:intergenic
CAAAGGTATTGGACTGCTGG+TGG 0.623552 7_1:+67169855 Msa1032230:CDS
CAAGCCCACCGAAGATAACA+CGG 0.626181 7_1:+67169689 Msa1032230:CDS
TTGTAGAGGAAGGCGGCGAG+AGG 0.626239 7_1:-67170436 None:intergenic
TTTGCCGGTATTGAGAGGCT+AGG 0.626885 7_1:-67169926 None:intergenic
ATGGTGTCCAACACCTATGT+TGG 0.630522 7_1:+67170337 Msa1032230:CDS
CAACTGTTACTTGTAGAGGA+AGG 0.635921 7_1:-67170446 None:intergenic
GTTTGTAGTTTCTAGCCTCG+TGG 0.637790 7_1:-67169976 None:intergenic
AGGTGTTGGACACCATTGCA+TGG 0.641634 7_1:-67170330 None:intergenic
ACGATGAGAAATGTTCCGAT+AGG 0.643759 7_1:+67169879 Msa1032230:CDS
CGTTATCCATGGATGTGTGG+TGG 0.660626 7_1:-67170010 None:intergenic
ATTTCTGCAAGAACTGCCAA+AGG 0.665461 7_1:+67169838 Msa1032230:CDS
ACAGAAGATCCACACAAGGA+CGG 0.669016 7_1:-67170158 None:intergenic
ACCATGGGTCCAGAATTGGC+CGG 0.674302 7_1:-67168492 None:intergenic
GTAGCAGCATCACATTGGAG+TGG 0.674545 7_1:+67170401 Msa1032230:CDS
CTGTTACTTGTAGAGGAAGG+CGG 0.676133 7_1:-67170443 None:intergenic
TCTCGTTATCCATGGATGTG+TGG 0.680622 7_1:-67170013 None:intergenic
CGAATGGAGTTCCAACCACG+AGG 0.695228 7_1:+67169961 Msa1032230:CDS
GTGTCCCAACTGTTGCATCG+CGG 0.715720 7_1:-67169771 None:intergenic
TGTTACAGAAGATCCACACA+AGG 0.727736 7_1:-67170162 None:intergenic
ATGTTCCGATAGGTGCTGGG+AGG 0.729596 7_1:+67169889 Msa1032230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTGTTTGTTTTCTTA+TGG + chr7_1:67168645-67168664 Msa1032230:intron 15.0%
!!! TATTTTGTTTGTTTTCTTAT+GGG + chr7_1:67168646-67168665 Msa1032230:intron 15.0%
!!! AAATTGATTTTTGTAATTCT+TGG + chr7_1:67169087-67169106 Msa1032230:intron 15.0%
!!! TAATTTGTGGTTTAAATTTT+AGG + chr7_1:67169533-67169552 Msa1032230:intron 15.0%
!!! TTATTTTGTTTGTTTTCTTA+TGG + chr7_1:67168645-67168664 Msa1032230:intron 15.0%
!!! TATTTTGTTTGTTTTCTTAT+GGG + chr7_1:67168646-67168665 Msa1032230:intron 15.0%
!!! AAATTGATTTTTGTAATTCT+TGG + chr7_1:67169087-67169106 Msa1032230:intron 15.0%
!!! TAATTTGTGGTTTAAATTTT+AGG + chr7_1:67169533-67169552 Msa1032230:intron 15.0%
!!! CTGTTTTTATGTTTTTTTGA+AGG + chr7_1:67168358-67168377 Msa1032230:five_prime_UTR 20.0%
!! TATAGTTATATATGTACCAT+GGG - chr7_1:67168510-67168529 None:intergenic 20.0%
!! TTATAGTTATATATGTACCA+TGG - chr7_1:67168511-67168530 None:intergenic 20.0%
!!! ATTTTGTTTGTTTTCTTATG+GGG + chr7_1:67168647-67168666 Msa1032230:intron 20.0%
!!! TCTTTATGTTTTAATTGTGA+TGG + chr7_1:67169011-67169030 Msa1032230:intron 20.0%
!!! TTTTTTATGATGATTTCTCT+TGG + chr7_1:67169188-67169207 Msa1032230:intron 20.0%
!!! CTGTTTTTATGTTTTTTTGA+AGG + chr7_1:67168358-67168377 Msa1032230:five_prime_UTR 20.0%
!! TATAGTTATATATGTACCAT+GGG - chr7_1:67168510-67168529 None:intergenic 20.0%
!! TTATAGTTATATATGTACCA+TGG - chr7_1:67168511-67168530 None:intergenic 20.0%
!!! ATTTTGTTTGTTTTCTTATG+GGG + chr7_1:67168647-67168666 Msa1032230:intron 20.0%
!!! TCTTTATGTTTTAATTGTGA+TGG + chr7_1:67169011-67169030 Msa1032230:intron 20.0%
!!! TTTTTTATGATGATTTCTCT+TGG + chr7_1:67169188-67169207 Msa1032230:intron 20.0%
! AAACATAAAAACAGAAACAG+AGG - chr7_1:67168352-67168371 None:intergenic 25.0%
! TTGTATGTTGCATATGAAAA+TGG + chr7_1:67168600-67168619 Msa1032230:intron 25.0%
! TGTATGTTGCATATGAAAAT+GGG + chr7_1:67168601-67168620 Msa1032230:intron 25.0%
!!! AGGATAATTTTGTTTCTTAG+TGG + chr7_1:67168733-67168752 Msa1032230:intron 25.0%
!!! ATAATTTTGTTTCTTAGTGG+AGG + chr7_1:67168736-67168755 Msa1032230:intron 25.0%
! GACCAATATAATGTAAACAA+AGG + chr7_1:67168910-67168929 Msa1032230:intron 25.0%
! CAATATAATGTAAACAAAGG+CGG + chr7_1:67168913-67168932 Msa1032230:intron 25.0%
! ATTCATCAATCATCAATCAT+TGG - chr7_1:67168961-67168980 None:intergenic 25.0%
! CATTTGTACACTTAATTTCT+AGG + chr7_1:67169161-67169180 Msa1032230:intron 25.0%
! CTTAGTTTATCACTAATTTG+TGG + chr7_1:67169520-67169539 Msa1032230:intron 25.0%
! GTTGTTGAAATAACAAAACT+TGG - chr7_1:67169796-67169815 None:intergenic 25.0%
!!! AGTTGTAAAGGTATATTTTG+TGG - chr7_1:67170380-67170399 None:intergenic 25.0%
! AAACATAAAAACAGAAACAG+AGG - chr7_1:67168352-67168371 None:intergenic 25.0%
! TTGTATGTTGCATATGAAAA+TGG + chr7_1:67168600-67168619 Msa1032230:intron 25.0%
! TGTATGTTGCATATGAAAAT+GGG + chr7_1:67168601-67168620 Msa1032230:intron 25.0%
!!! AGGATAATTTTGTTTCTTAG+TGG + chr7_1:67168733-67168752 Msa1032230:intron 25.0%
!!! ATAATTTTGTTTCTTAGTGG+AGG + chr7_1:67168736-67168755 Msa1032230:intron 25.0%
! GACCAATATAATGTAAACAA+AGG + chr7_1:67168910-67168929 Msa1032230:intron 25.0%
! CAATATAATGTAAACAAAGG+CGG + chr7_1:67168913-67168932 Msa1032230:intron 25.0%
! ATTCATCAATCATCAATCAT+TGG - chr7_1:67168961-67168980 None:intergenic 25.0%
! CATTTGTACACTTAATTTCT+AGG + chr7_1:67169161-67169180 Msa1032230:intron 25.0%
! CTTAGTTTATCACTAATTTG+TGG + chr7_1:67169520-67169539 Msa1032230:intron 25.0%
! GTTGTTGAAATAACAAAACT+TGG - chr7_1:67169796-67169815 None:intergenic 25.0%
!!! AGTTGTAAAGGTATATTTTG+TGG - chr7_1:67170380-67170399 None:intergenic 25.0%
GATCATGGTATTATGCTATT+TGG + chr7_1:67168438-67168457 Msa1032230:CDS 30.0%
! ATGGTATTATGCTATTTGGT+TGG + chr7_1:67168442-67168461 Msa1032230:CDS 30.0%
!! CAAAATCTTCTGAAGTTTGA+AGG + chr7_1:67168713-67168732 Msa1032230:intron 30.0%
!! GATTCATTTTAATGAGCTTG+AGG + chr7_1:67168774-67168793 Msa1032230:intron 30.0%
!! ATTTTAATGAGCTTGAGGTA+AGG + chr7_1:67168779-67168798 Msa1032230:intron 30.0%
GACTAAAGATTGTTATAGTC+CGG - chr7_1:67168836-67168855 None:intergenic 30.0%
! CGCCTTTGTTTACATTATAT+TGG - chr7_1:67168915-67168934 None:intergenic 30.0%
!!! GTTTTAATTGTGATGGAAGA+TGG + chr7_1:67169018-67169037 Msa1032230:intron 30.0%
! ATGACTCTAAGAAAATGAAG+AGG - chr7_1:67169144-67169163 None:intergenic 30.0%
TCCAATAGAAGTAAAAGATC+AGG + chr7_1:67169332-67169351 Msa1032230:intron 30.0%
! TCCTGATCTTTTACTTCTAT+TGG - chr7_1:67169336-67169355 None:intergenic 30.0%
TGTTATGCTTGCAAAATTTG+AGG + chr7_1:67169373-67169392 Msa1032230:intron 30.0%
! AGGACACAAGTATAACTTTT+TGG - chr7_1:67169401-67169420 None:intergenic 30.0%
ACAACAAATTCTCACATAAC+AGG - chr7_1:67169421-67169440 None:intergenic 30.0%
TAGACAGAGAAATGAAATCA+AGG - chr7_1:67169469-67169488 None:intergenic 30.0%
TCATTTCTCTGTCTATTCTT+AGG + chr7_1:67169474-67169493 Msa1032230:intron 30.0%
AGACAATTCTTCTGATTCAA+TGG + chr7_1:67169620-67169639 Msa1032230:CDS 30.0%
TTTATCTTGATCCGTATTAC+CGG - chr7_1:67169718-67169737 None:intergenic 30.0%
CAAATTATAGTAACCACGAA+TGG + chr7_1:67169945-67169964 Msa1032230:CDS 30.0%
AACGAGACTGTATTGAAATT+TGG + chr7_1:67170029-67170048 Msa1032230:CDS 30.0%
! TTGGAATAATGTTGCTTCAA+TGG + chr7_1:67170283-67170302 Msa1032230:CDS 30.0%
!! GTTCTAATTGTTTTTCGAAC+CGG - chr7_1:67170557-67170576 None:intergenic 30.0%
GATCATGGTATTATGCTATT+TGG + chr7_1:67168438-67168457 Msa1032230:CDS 30.0%
! ATGGTATTATGCTATTTGGT+TGG + chr7_1:67168442-67168461 Msa1032230:CDS 30.0%
!! CAAAATCTTCTGAAGTTTGA+AGG + chr7_1:67168713-67168732 Msa1032230:intron 30.0%
!! GATTCATTTTAATGAGCTTG+AGG + chr7_1:67168774-67168793 Msa1032230:intron 30.0%
!! ATTTTAATGAGCTTGAGGTA+AGG + chr7_1:67168779-67168798 Msa1032230:intron 30.0%
GACTAAAGATTGTTATAGTC+CGG - chr7_1:67168836-67168855 None:intergenic 30.0%
! CGCCTTTGTTTACATTATAT+TGG - chr7_1:67168915-67168934 None:intergenic 30.0%
!!! GTTTTAATTGTGATGGAAGA+TGG + chr7_1:67169018-67169037 Msa1032230:intron 30.0%
! ATGACTCTAAGAAAATGAAG+AGG - chr7_1:67169144-67169163 None:intergenic 30.0%
TCCAATAGAAGTAAAAGATC+AGG + chr7_1:67169332-67169351 Msa1032230:intron 30.0%
! TCCTGATCTTTTACTTCTAT+TGG - chr7_1:67169336-67169355 None:intergenic 30.0%
TGTTATGCTTGCAAAATTTG+AGG + chr7_1:67169373-67169392 Msa1032230:intron 30.0%
! AGGACACAAGTATAACTTTT+TGG - chr7_1:67169401-67169420 None:intergenic 30.0%
ACAACAAATTCTCACATAAC+AGG - chr7_1:67169421-67169440 None:intergenic 30.0%
TAGACAGAGAAATGAAATCA+AGG - chr7_1:67169469-67169488 None:intergenic 30.0%
TCATTTCTCTGTCTATTCTT+AGG + chr7_1:67169474-67169493 Msa1032230:intron 30.0%
AGACAATTCTTCTGATTCAA+TGG + chr7_1:67169620-67169639 Msa1032230:CDS 30.0%
TTTATCTTGATCCGTATTAC+CGG - chr7_1:67169718-67169737 None:intergenic 30.0%
CAAATTATAGTAACCACGAA+TGG + chr7_1:67169945-67169964 Msa1032230:CDS 30.0%
AACGAGACTGTATTGAAATT+TGG + chr7_1:67170029-67170048 Msa1032230:CDS 30.0%
! TTGGAATAATGTTGCTTCAA+TGG + chr7_1:67170283-67170302 Msa1032230:CDS 30.0%
!! GTTCTAATTGTTTTTCGAAC+CGG - chr7_1:67170557-67170576 None:intergenic 30.0%
GAAGAAAGACATAAGCTGAA+AGG - chr7_1:67168557-67168576 None:intergenic 35.0%
TGTTGCATATGAAAATGGGT+TGG + chr7_1:67168605-67168624 Msa1032230:intron 35.0%
!!! AATGGGTTGGACGTAAATTT+TGG + chr7_1:67168618-67168637 Msa1032230:intron 35.0%
! TATGGGGTTGTTGAGATTTT+TGG + chr7_1:67168663-67168682 Msa1032230:intron 35.0%
TAGTAATCCAGAGTTTAGCT+GGG - chr7_1:67168874-67168893 None:intergenic 35.0%
TGTAAACAAAGGCGGTATTT+AGG + chr7_1:67168921-67168940 Msa1032230:intron 35.0%
TTGATGTGAACCAAAGGATT+TGG + chr7_1:67169111-67169130 Msa1032230:intron 35.0%
! AAGATCAGGACTAGTGAAAT+AGG + chr7_1:67169346-67169365 Msa1032230:intron 35.0%
! AGAAGAATTGTCTTGTTGCT+CGG - chr7_1:67169613-67169632 None:intergenic 35.0%
ACAAGAGTCTATACCAGAAA+AGG + chr7_1:67169650-67169669 Msa1032230:CDS 35.0%
!!! TTTACTATTGGCTCCTTTTC+TGG - chr7_1:67169666-67169685 None:intergenic 35.0%
! TATAATTTGCCGGTATTGAG+AGG - chr7_1:67169934-67169953 None:intergenic 35.0%
! TCGTGGTTACTATAATTTGC+CGG - chr7_1:67169944-67169963 None:intergenic 35.0%
!! ATTCCATTGATTCGCAAAGA+GGG - chr7_1:67170064-67170083 None:intergenic 35.0%
CAGAACACAATGCATCAAAT+TGG + chr7_1:67170213-67170232 Msa1032230:CDS 35.0%
TTATTCCAACCTGGATTCAT+TGG - chr7_1:67170272-67170291 None:intergenic 35.0%
! ATATTTTGTGGCTGAATTCC+TGG - chr7_1:67170368-67170387 None:intergenic 35.0%
ATCTCTATTGTGCTTTCCTA+GGG - chr7_1:67170495-67170514 None:intergenic 35.0%
TATCTCTATTGTGCTTTCCT+AGG - chr7_1:67170496-67170515 None:intergenic 35.0%
TAAAACAGACAAGTGTGTTC+CGG + chr7_1:67170535-67170554 Msa1032230:CDS 35.0%
CCTAATGAAGAAGGAAAAGA+CGG + chr7_1:67170635-67170654 Msa1032230:CDS 35.0%
GAAGAAAGACATAAGCTGAA+AGG - chr7_1:67168557-67168576 None:intergenic 35.0%
TGTTGCATATGAAAATGGGT+TGG + chr7_1:67168605-67168624 Msa1032230:intron 35.0%
!!! AATGGGTTGGACGTAAATTT+TGG + chr7_1:67168618-67168637 Msa1032230:intron 35.0%
! TATGGGGTTGTTGAGATTTT+TGG + chr7_1:67168663-67168682 Msa1032230:intron 35.0%
TAGTAATCCAGAGTTTAGCT+GGG - chr7_1:67168874-67168893 None:intergenic 35.0%
TGTAAACAAAGGCGGTATTT+AGG + chr7_1:67168921-67168940 Msa1032230:intron 35.0%
TTGATGTGAACCAAAGGATT+TGG + chr7_1:67169111-67169130 Msa1032230:intron 35.0%
! AAGATCAGGACTAGTGAAAT+AGG + chr7_1:67169346-67169365 Msa1032230:intron 35.0%
! AGAAGAATTGTCTTGTTGCT+CGG - chr7_1:67169613-67169632 None:intergenic 35.0%
ACAAGAGTCTATACCAGAAA+AGG + chr7_1:67169650-67169669 Msa1032230:CDS 35.0%
!!! TTTACTATTGGCTCCTTTTC+TGG - chr7_1:67169666-67169685 None:intergenic 35.0%
! TATAATTTGCCGGTATTGAG+AGG - chr7_1:67169934-67169953 None:intergenic 35.0%
! TCGTGGTTACTATAATTTGC+CGG - chr7_1:67169944-67169963 None:intergenic 35.0%
!! ATTCCATTGATTCGCAAAGA+GGG - chr7_1:67170064-67170083 None:intergenic 35.0%
CAGAACACAATGCATCAAAT+TGG + chr7_1:67170213-67170232 Msa1032230:CDS 35.0%
TTATTCCAACCTGGATTCAT+TGG - chr7_1:67170272-67170291 None:intergenic 35.0%
! ATATTTTGTGGCTGAATTCC+TGG - chr7_1:67170368-67170387 None:intergenic 35.0%
ATCTCTATTGTGCTTTCCTA+GGG - chr7_1:67170495-67170514 None:intergenic 35.0%
TATCTCTATTGTGCTTTCCT+AGG - chr7_1:67170496-67170515 None:intergenic 35.0%
TAAAACAGACAAGTGTGTTC+CGG + chr7_1:67170535-67170554 Msa1032230:CDS 35.0%
CCTAATGAAGAAGGAAAAGA+CGG + chr7_1:67170635-67170654 Msa1032230:CDS 35.0%
GCTATTTGGTTGGAAGATTC+CGG + chr7_1:67168452-67168471 Msa1032230:CDS 40.0%
!!! GGGTTGTTGAGATTTTTGGT+TGG + chr7_1:67168667-67168686 Msa1032230:intron 40.0%
ACAAATTGTTCCGTAGAACC+CGG + chr7_1:67168802-67168821 Msa1032230:intron 40.0%
TTATAGTCCGGATTCAAACC+CGG - chr7_1:67168824-67168843 None:intergenic 40.0%
CTAGTAATCCAGAGTTTAGC+TGG - chr7_1:67168875-67168894 None:intergenic 40.0%
TCTGGATTACTAGAGAGTAG+AGG + chr7_1:67168882-67168901 Msa1032230:intron 40.0%
CTGGATTACTAGAGAGTAGA+GGG + chr7_1:67168883-67168902 Msa1032230:intron 40.0%
CTTGGATTGATGTGAACCAA+AGG + chr7_1:67169105-67169124 Msa1032230:intron 40.0%
AGGATCAAGACCAAATCCTT+TGG - chr7_1:67169124-67169143 None:intergenic 40.0%
! TCTGAGATAAGCAGAAGTTG+AGG + chr7_1:67169297-67169316 Msa1032230:intron 40.0%
CAGTACAAGGAAAACAGAAG+TGG + chr7_1:67169566-67169585 Msa1032230:CDS 40.0%
GTGGGCTTGGAATTTACTAT+TGG - chr7_1:67169678-67169697 None:intergenic 40.0%
ATTTCTGCAAGAACTGCCAA+AGG + chr7_1:67169838-67169857 Msa1032230:CDS 40.0%
ACGATGAGAAATGTTCCGAT+AGG + chr7_1:67169879-67169898 Msa1032230:CDS 40.0%
CAATACAGTCTCGTTATCCA+TGG - chr7_1:67170024-67170043 None:intergenic 40.0%
!! TTCCATTGATTCGCAAAGAG+GGG - chr7_1:67170063-67170082 None:intergenic 40.0%
!! GATTCCATTGATTCGCAAAG+AGG - chr7_1:67170065-67170084 None:intergenic 40.0%
! TTGCATCAGCACTTCTTTTC+TGG - chr7_1:67170106-67170125 None:intergenic 40.0%
TGTTACAGAAGATCCACACA+AGG - chr7_1:67170165-67170184 None:intergenic 40.0%
GGATCTTCTGTAACAAACAC+TGG + chr7_1:67170170-67170189 Msa1032230:CDS 40.0%
GTAACAAACACTGGCAATCA+AGG + chr7_1:67170179-67170198 Msa1032230:CDS 40.0%
! AGTGTTATCCTGTTTCTCCA+TGG + chr7_1:67170240-67170259 Msa1032230:CDS 40.0%
! GTGTTATCCTGTTTCTCCAT+GGG + chr7_1:67170241-67170260 Msa1032230:CDS 40.0%
TACTACCAATGAATCCAGGT+TGG + chr7_1:67170264-67170283 Msa1032230:CDS 40.0%
GAAGCAACATTATTCCAACC+TGG - chr7_1:67170281-67170300 None:intergenic 40.0%
ATTCCTGGAATTGCCAACAT+AGG - chr7_1:67170353-67170372 None:intergenic 40.0%
GATGCTGCTACAAGTTGTAA+AGG - chr7_1:67170392-67170411 None:intergenic 40.0%
AACTTGTAGCAGCATCACAT+TGG + chr7_1:67170396-67170415 Msa1032230:CDS 40.0%
! CAACTGTTACTTGTAGAGGA+AGG - chr7_1:67170449-67170468 None:intergenic 40.0%
ACCAAGAAGCCTAATGAAGA+AGG + chr7_1:67170626-67170645 Msa1032230:CDS 40.0%
TCCTTCTTCATTAGGCTTCT+TGG - chr7_1:67170630-67170649 None:intergenic 40.0%
! CCGTCTTTTCCTTCTTCATT+AGG - chr7_1:67170638-67170657 None:intergenic 40.0%
! AGAAGGAAAAGACGGTGTTT+TGG + chr7_1:67170643-67170662 Msa1032230:CDS 40.0%
! GAAGGAAAAGACGGTGTTTT+GGG + chr7_1:67170644-67170663 Msa1032230:CDS 40.0%
TTCTCATGCTCATACAATCC+AGG + chr7_1:67170703-67170722 Msa1032230:CDS 40.0%
GCTATTTGGTTGGAAGATTC+CGG + chr7_1:67168452-67168471 Msa1032230:CDS 40.0%
!!! GGGTTGTTGAGATTTTTGGT+TGG + chr7_1:67168667-67168686 Msa1032230:intron 40.0%
ACAAATTGTTCCGTAGAACC+CGG + chr7_1:67168802-67168821 Msa1032230:intron 40.0%
TTATAGTCCGGATTCAAACC+CGG - chr7_1:67168824-67168843 None:intergenic 40.0%
CTAGTAATCCAGAGTTTAGC+TGG - chr7_1:67168875-67168894 None:intergenic 40.0%
TCTGGATTACTAGAGAGTAG+AGG + chr7_1:67168882-67168901 Msa1032230:intron 40.0%
CTGGATTACTAGAGAGTAGA+GGG + chr7_1:67168883-67168902 Msa1032230:intron 40.0%
CTTGGATTGATGTGAACCAA+AGG + chr7_1:67169105-67169124 Msa1032230:intron 40.0%
AGGATCAAGACCAAATCCTT+TGG - chr7_1:67169124-67169143 None:intergenic 40.0%
! TCTGAGATAAGCAGAAGTTG+AGG + chr7_1:67169297-67169316 Msa1032230:intron 40.0%
CAGTACAAGGAAAACAGAAG+TGG + chr7_1:67169566-67169585 Msa1032230:CDS 40.0%
GTGGGCTTGGAATTTACTAT+TGG - chr7_1:67169678-67169697 None:intergenic 40.0%
ATTTCTGCAAGAACTGCCAA+AGG + chr7_1:67169838-67169857 Msa1032230:CDS 40.0%
ACGATGAGAAATGTTCCGAT+AGG + chr7_1:67169879-67169898 Msa1032230:CDS 40.0%
CAATACAGTCTCGTTATCCA+TGG - chr7_1:67170024-67170043 None:intergenic 40.0%
!! TTCCATTGATTCGCAAAGAG+GGG - chr7_1:67170063-67170082 None:intergenic 40.0%
!! GATTCCATTGATTCGCAAAG+AGG - chr7_1:67170065-67170084 None:intergenic 40.0%
! TTGCATCAGCACTTCTTTTC+TGG - chr7_1:67170106-67170125 None:intergenic 40.0%
TGTTACAGAAGATCCACACA+AGG - chr7_1:67170165-67170184 None:intergenic 40.0%
GGATCTTCTGTAACAAACAC+TGG + chr7_1:67170170-67170189 Msa1032230:CDS 40.0%
GTAACAAACACTGGCAATCA+AGG + chr7_1:67170179-67170198 Msa1032230:CDS 40.0%
! AGTGTTATCCTGTTTCTCCA+TGG + chr7_1:67170240-67170259 Msa1032230:CDS 40.0%
! GTGTTATCCTGTTTCTCCAT+GGG + chr7_1:67170241-67170260 Msa1032230:CDS 40.0%
TACTACCAATGAATCCAGGT+TGG + chr7_1:67170264-67170283 Msa1032230:CDS 40.0%
GAAGCAACATTATTCCAACC+TGG - chr7_1:67170281-67170300 None:intergenic 40.0%
ATTCCTGGAATTGCCAACAT+AGG - chr7_1:67170353-67170372 None:intergenic 40.0%
GATGCTGCTACAAGTTGTAA+AGG - chr7_1:67170392-67170411 None:intergenic 40.0%
AACTTGTAGCAGCATCACAT+TGG + chr7_1:67170396-67170415 Msa1032230:CDS 40.0%
! CAACTGTTACTTGTAGAGGA+AGG - chr7_1:67170449-67170468 None:intergenic 40.0%
ACCAAGAAGCCTAATGAAGA+AGG + chr7_1:67170626-67170645 Msa1032230:CDS 40.0%
TCCTTCTTCATTAGGCTTCT+TGG - chr7_1:67170630-67170649 None:intergenic 40.0%
! CCGTCTTTTCCTTCTTCATT+AGG - chr7_1:67170638-67170657 None:intergenic 40.0%
! AGAAGGAAAAGACGGTGTTT+TGG + chr7_1:67170643-67170662 Msa1032230:CDS 40.0%
! GAAGGAAAAGACGGTGTTTT+GGG + chr7_1:67170644-67170663 Msa1032230:CDS 40.0%
TTCTCATGCTCATACAATCC+AGG + chr7_1:67170703-67170722 Msa1032230:CDS 40.0%
! GAACATGTCTGAGACTGAGA+AGG + chr7_1:67168416-67168435 Msa1032230:CDS 45.0%
! TCTGAGACTGAGAAGGATCA+TGG + chr7_1:67168423-67168442 Msa1032230:CDS 45.0%
ATGTACCATGGGTCCAGAAT+TGG - chr7_1:67168499-67168518 None:intergenic 45.0%
CAAATTGTTCCGTAGAACCC+GGG + chr7_1:67168803-67168822 Msa1032230:intron 45.0%
TATAGTCCGGATTCAAACCC+GGG - chr7_1:67168823-67168842 None:intergenic 45.0%
CTTACTTCCCAGCTAAACTC+TGG + chr7_1:67168864-67168883 Msa1032230:intron 45.0%
AGGATACTTGCAGCAGTACA+AGG + chr7_1:67169553-67169572 Msa1032230:intron 45.0%
!!! TGCTCGGTTTTTTCTGCACA+AGG - chr7_1:67169597-67169616 None:intergenic 45.0%
TAACACGGAGACCGGTAATA+CGG + chr7_1:67169704-67169723 Msa1032230:CDS 45.0%
GGACACTGAACAATCTTGTC+TGG - chr7_1:67169753-67169772 None:intergenic 45.0%
CAGTTCTTGCAGAAATGTCG+AGG - chr7_1:67169834-67169853 None:intergenic 45.0%
! GCAAGAACTGCCAAAGGTAT+TGG + chr7_1:67169844-67169863 Msa1032230:CDS 45.0%
AGAAATGTTCCGATAGGTGC+TGG + chr7_1:67169885-67169904 Msa1032230:CDS 45.0%
GAAATGTTCCGATAGGTGCT+GGG + chr7_1:67169886-67169905 Msa1032230:CDS 45.0%
!! GTTTGTAGTTTCTAGCCTCG+TGG - chr7_1:67169979-67169998 None:intergenic 45.0%
TCTCGTTATCCATGGATGTG+TGG - chr7_1:67170016-67170035 None:intergenic 45.0%
TACCCCTCTTTGCGAATCAA+TGG + chr7_1:67170058-67170077 Msa1032230:CDS 45.0%
CAGTTCTGTGCAACATAGAG+AGG + chr7_1:67170133-67170152 Msa1032230:CDS 45.0%
ACAGAAGATCCACACAAGGA+CGG - chr7_1:67170161-67170180 None:intergenic 45.0%
! GGATTCATTGGTAGTACCCA+TGG - chr7_1:67170260-67170279 None:intergenic 45.0%
TGGGTACTACCAATGAATCC+AGG + chr7_1:67170260-67170279 Msa1032230:CDS 45.0%
ATGGTGTCCAACACCTATGT+TGG + chr7_1:67170337-67170356 Msa1032230:CDS 45.0%
GGAATTGCCAACATAGGTGT+TGG - chr7_1:67170347-67170366 None:intergenic 45.0%
ACACCTATGTTGGCAATTCC+AGG + chr7_1:67170347-67170366 Msa1032230:CDS 45.0%
! CTGTTACTTGTAGAGGAAGG+CGG - chr7_1:67170446-67170465 None:intergenic 45.0%
! GCAGCAACTGTTACTTGTAG+AGG - chr7_1:67170453-67170472 None:intergenic 45.0%
ACAAGTAACAGTTGCTGCTC+AGG + chr7_1:67170455-67170474 Msa1032230:CDS 45.0%
AACAGTTGCTGCTCAGGAAA+TGG + chr7_1:67170461-67170480 Msa1032230:CDS 45.0%
CTATTGTGCTTTCCTAGGGT+TGG - chr7_1:67170491-67170510 None:intergenic 45.0%
CAGTCTCGAAAAGTCCTATC+CGG + chr7_1:67170591-67170610 Msa1032230:CDS 45.0%
AGTCTCGAAAAGTCCTATCC+GGG + chr7_1:67170592-67170611 Msa1032230:CDS 45.0%
! TCTTGGTAGCTAATGTAGCC+CGG - chr7_1:67170613-67170632 None:intergenic 45.0%
! TTTGGGTGGCTCTCAGATTT+TGG + chr7_1:67170661-67170680 Msa1032230:CDS 45.0%
ATGAGAAATAGCTCCTGAGC+TGG - chr7_1:67170690-67170709 None:intergenic 45.0%
! GAACATGTCTGAGACTGAGA+AGG + chr7_1:67168416-67168435 Msa1032230:CDS 45.0%
! TCTGAGACTGAGAAGGATCA+TGG + chr7_1:67168423-67168442 Msa1032230:CDS 45.0%
ATGTACCATGGGTCCAGAAT+TGG - chr7_1:67168499-67168518 None:intergenic 45.0%
CAAATTGTTCCGTAGAACCC+GGG + chr7_1:67168803-67168822 Msa1032230:intron 45.0%
TATAGTCCGGATTCAAACCC+GGG - chr7_1:67168823-67168842 None:intergenic 45.0%
CTTACTTCCCAGCTAAACTC+TGG + chr7_1:67168864-67168883 Msa1032230:intron 45.0%
AGGATACTTGCAGCAGTACA+AGG + chr7_1:67169553-67169572 Msa1032230:intron 45.0%
!!! TGCTCGGTTTTTTCTGCACA+AGG - chr7_1:67169597-67169616 None:intergenic 45.0%
TAACACGGAGACCGGTAATA+CGG + chr7_1:67169704-67169723 Msa1032230:CDS 45.0%
GGACACTGAACAATCTTGTC+TGG - chr7_1:67169753-67169772 None:intergenic 45.0%
CAGTTCTTGCAGAAATGTCG+AGG - chr7_1:67169834-67169853 None:intergenic 45.0%
! GCAAGAACTGCCAAAGGTAT+TGG + chr7_1:67169844-67169863 Msa1032230:CDS 45.0%
AGAAATGTTCCGATAGGTGC+TGG + chr7_1:67169885-67169904 Msa1032230:CDS 45.0%
GAAATGTTCCGATAGGTGCT+GGG + chr7_1:67169886-67169905 Msa1032230:CDS 45.0%
!! GTTTGTAGTTTCTAGCCTCG+TGG - chr7_1:67169979-67169998 None:intergenic 45.0%
TCTCGTTATCCATGGATGTG+TGG - chr7_1:67170016-67170035 None:intergenic 45.0%
TACCCCTCTTTGCGAATCAA+TGG + chr7_1:67170058-67170077 Msa1032230:CDS 45.0%
CAGTTCTGTGCAACATAGAG+AGG + chr7_1:67170133-67170152 Msa1032230:CDS 45.0%
ACAGAAGATCCACACAAGGA+CGG - chr7_1:67170161-67170180 None:intergenic 45.0%
! GGATTCATTGGTAGTACCCA+TGG - chr7_1:67170260-67170279 None:intergenic 45.0%
TGGGTACTACCAATGAATCC+AGG + chr7_1:67170260-67170279 Msa1032230:CDS 45.0%
ATGGTGTCCAACACCTATGT+TGG + chr7_1:67170337-67170356 Msa1032230:CDS 45.0%
GGAATTGCCAACATAGGTGT+TGG - chr7_1:67170347-67170366 None:intergenic 45.0%
ACACCTATGTTGGCAATTCC+AGG + chr7_1:67170347-67170366 Msa1032230:CDS 45.0%
! CTGTTACTTGTAGAGGAAGG+CGG - chr7_1:67170446-67170465 None:intergenic 45.0%
! GCAGCAACTGTTACTTGTAG+AGG - chr7_1:67170453-67170472 None:intergenic 45.0%
ACAAGTAACAGTTGCTGCTC+AGG + chr7_1:67170455-67170474 Msa1032230:CDS 45.0%
AACAGTTGCTGCTCAGGAAA+TGG + chr7_1:67170461-67170480 Msa1032230:CDS 45.0%
CTATTGTGCTTTCCTAGGGT+TGG - chr7_1:67170491-67170510 None:intergenic 45.0%
CAGTCTCGAAAAGTCCTATC+CGG + chr7_1:67170591-67170610 Msa1032230:CDS 45.0%
AGTCTCGAAAAGTCCTATCC+GGG + chr7_1:67170592-67170611 Msa1032230:CDS 45.0%
! TCTTGGTAGCTAATGTAGCC+CGG - chr7_1:67170613-67170632 None:intergenic 45.0%
! TTTGGGTGGCTCTCAGATTT+TGG + chr7_1:67170661-67170680 Msa1032230:CDS 45.0%
ATGAGAAATAGCTCCTGAGC+TGG - chr7_1:67170690-67170709 None:intergenic 45.0%
TTGGCCGGAATTGGACATTC+CGG - chr7_1:67168480-67168499 None:intergenic 50.0%
TGTCCAATTCCGGCCAATTC+TGG + chr7_1:67168483-67168502 Msa1032230:CDS 50.0%
GGATTCAAACCCGGGTTCTA+CGG - chr7_1:67168815-67168834 None:intergenic 50.0%
GTAGAACCCGGGTTTGAATC+CGG + chr7_1:67168814-67168833 Msa1032230:intron 50.0%
CAAGCCCACCGAAGATAACA+CGG + chr7_1:67169689-67169708 Msa1032230:CDS 50.0%
GTCTCCGTGTTATCTTCGGT+GGG - chr7_1:67169696-67169715 None:intergenic 50.0%
ACCGAAGATAACACGGAGAC+CGG + chr7_1:67169696-67169715 Msa1032230:CDS 50.0%
ACCGGTCTCCGTGTTATCTT+CGG - chr7_1:67169700-67169719 None:intergenic 50.0%
!! TGCCAAAGGTATTGGACTGC+TGG + chr7_1:67169852-67169871 Msa1032230:CDS 50.0%
CACCAGCAGTCCAATACCTT+TGG - chr7_1:67169857-67169876 None:intergenic 50.0%
!! CAAAGGTATTGGACTGCTGG+TGG + chr7_1:67169855-67169874 Msa1032230:CDS 50.0%
AGCACCTAGCCTCTCAATAC+CGG + chr7_1:67169922-67169941 Msa1032230:CDS 50.0%
! TTTGCCGGTATTGAGAGGCT+AGG - chr7_1:67169929-67169948 None:intergenic 50.0%
!! GTAGTTTCTAGCCTCGTGGT+TGG - chr7_1:67169975-67169994 None:intergenic 50.0%
! CATGGATGTGTGGTGGTGAT+CGG - chr7_1:67170006-67170025 None:intergenic 50.0%
CGTTATCCATGGATGTGTGG+TGG - chr7_1:67170013-67170032 None:intergenic 50.0%
!! GATTCGCAAAGAGGGGTATC+AGG - chr7_1:67170056-67170075 None:intergenic 50.0%
GGTAGTACCCATGGAGAAAC+AGG - chr7_1:67170251-67170270 None:intergenic 50.0%
GGCAGCAATTCATCCGACTT+CGG + chr7_1:67170304-67170323 Msa1032230:CDS 50.0%
CATTGCATGGATGCCGAAGT+CGG - chr7_1:67170320-67170339 None:intergenic 50.0%
!! AGGTGTTGGACACCATTGCA+TGG - chr7_1:67170333-67170352 None:intergenic 50.0%
GTAGCAGCATCACATTGGAG+TGG + chr7_1:67170401-67170420 Msa1032230:CDS 50.0%
GTAGCTAATGTAGCCCGGAT+AGG - chr7_1:67170608-67170627 None:intergenic 50.0%
!! GGAAAAGACGGTGTTTTGGG+TGG + chr7_1:67170647-67170666 Msa1032230:CDS 50.0%
!! CAGATTTTGGAAGCCAGCTC+AGG + chr7_1:67170674-67170693 Msa1032230:CDS 50.0%
TTGGCCGGAATTGGACATTC+CGG - chr7_1:67168480-67168499 None:intergenic 50.0%
TGTCCAATTCCGGCCAATTC+TGG + chr7_1:67168483-67168502 Msa1032230:CDS 50.0%
GGATTCAAACCCGGGTTCTA+CGG - chr7_1:67168815-67168834 None:intergenic 50.0%
GTAGAACCCGGGTTTGAATC+CGG + chr7_1:67168814-67168833 Msa1032230:intron 50.0%
CAAGCCCACCGAAGATAACA+CGG + chr7_1:67169689-67169708 Msa1032230:CDS 50.0%
GTCTCCGTGTTATCTTCGGT+GGG - chr7_1:67169696-67169715 None:intergenic 50.0%
ACCGAAGATAACACGGAGAC+CGG + chr7_1:67169696-67169715 Msa1032230:CDS 50.0%
ACCGGTCTCCGTGTTATCTT+CGG - chr7_1:67169700-67169719 None:intergenic 50.0%
!! TGCCAAAGGTATTGGACTGC+TGG + chr7_1:67169852-67169871 Msa1032230:CDS 50.0%
CACCAGCAGTCCAATACCTT+TGG - chr7_1:67169857-67169876 None:intergenic 50.0%
!! CAAAGGTATTGGACTGCTGG+TGG + chr7_1:67169855-67169874 Msa1032230:CDS 50.0%
AGCACCTAGCCTCTCAATAC+CGG + chr7_1:67169922-67169941 Msa1032230:CDS 50.0%
! TTTGCCGGTATTGAGAGGCT+AGG - chr7_1:67169929-67169948 None:intergenic 50.0%
!! GTAGTTTCTAGCCTCGTGGT+TGG - chr7_1:67169975-67169994 None:intergenic 50.0%
! CATGGATGTGTGGTGGTGAT+CGG - chr7_1:67170006-67170025 None:intergenic 50.0%
CGTTATCCATGGATGTGTGG+TGG - chr7_1:67170013-67170032 None:intergenic 50.0%
!! GATTCGCAAAGAGGGGTATC+AGG - chr7_1:67170056-67170075 None:intergenic 50.0%
GGTAGTACCCATGGAGAAAC+AGG - chr7_1:67170251-67170270 None:intergenic 50.0%
GGCAGCAATTCATCCGACTT+CGG + chr7_1:67170304-67170323 Msa1032230:CDS 50.0%
CATTGCATGGATGCCGAAGT+CGG - chr7_1:67170320-67170339 None:intergenic 50.0%
!! AGGTGTTGGACACCATTGCA+TGG - chr7_1:67170333-67170352 None:intergenic 50.0%
GTAGCAGCATCACATTGGAG+TGG + chr7_1:67170401-67170420 Msa1032230:CDS 50.0%
GTAGCTAATGTAGCCCGGAT+AGG - chr7_1:67170608-67170627 None:intergenic 50.0%
!! GGAAAAGACGGTGTTTTGGG+TGG + chr7_1:67170647-67170666 Msa1032230:CDS 50.0%
!! CAGATTTTGGAAGCCAGCTC+AGG + chr7_1:67170674-67170693 Msa1032230:CDS 50.0%
TGGTTGGAAGATTCCGGTGC+CGG + chr7_1:67168458-67168477 Msa1032230:CDS 55.0%
GGAATTGGACATTCCGGCAC+CGG - chr7_1:67168474-67168493 None:intergenic 55.0%
! GGTGCCGGAATGTCCAATTC+CGG + chr7_1:67168473-67168492 Msa1032230:CDS 55.0%
GGTCCAGAATTGGCCGGAAT+TGG - chr7_1:67168489-67168508 None:intergenic 55.0%
ACCATGGGTCCAGAATTGGC+CGG - chr7_1:67168495-67168514 None:intergenic 55.0%
! CGTGTTATCTTCGGTGGGCT+TGG - chr7_1:67169691-67169710 None:intergenic 55.0%
GGTCTCCGTGTTATCTTCGG+TGG - chr7_1:67169697-67169716 None:intergenic 55.0%
AGTGTCCGCGATGCAACAGT+TGG + chr7_1:67169766-67169785 Msa1032230:CDS 55.0%
GTGTCCGCGATGCAACAGTT+GGG + chr7_1:67169767-67169786 Msa1032230:CDS 55.0%
GTGTCCCAACTGTTGCATCG+CGG - chr7_1:67169774-67169793 None:intergenic 55.0%
!! ATGTTCCGATAGGTGCTGGG+AGG + chr7_1:67169889-67169908 Msa1032230:CDS 55.0%
CGTGGTTGGAACTCCATTCG+TGG - chr7_1:67169961-67169980 None:intergenic 55.0%
CGAATGGAGTTCCAACCACG+AGG + chr7_1:67169961-67169980 Msa1032230:CDS 55.0%
CGATCACCACCACACATCCA+TGG + chr7_1:67170004-67170023 Msa1032230:CDS 55.0%
AGAGAGGAACCGTCCTTGTG+TGG + chr7_1:67170149-67170168 Msa1032230:CDS 55.0%
CGACTTCGGCATCCATGCAA+TGG + chr7_1:67170318-67170337 Msa1032230:CDS 55.0%
GGAAATGGCTCACCAACCCT+AGG + chr7_1:67170476-67170495 Msa1032230:CDS 55.0%
TGGTTGGAAGATTCCGGTGC+CGG + chr7_1:67168458-67168477 Msa1032230:CDS 55.0%
GGAATTGGACATTCCGGCAC+CGG - chr7_1:67168474-67168493 None:intergenic 55.0%
! GGTGCCGGAATGTCCAATTC+CGG + chr7_1:67168473-67168492 Msa1032230:CDS 55.0%
GGTCCAGAATTGGCCGGAAT+TGG - chr7_1:67168489-67168508 None:intergenic 55.0%
ACCATGGGTCCAGAATTGGC+CGG - chr7_1:67168495-67168514 None:intergenic 55.0%
! CGTGTTATCTTCGGTGGGCT+TGG - chr7_1:67169691-67169710 None:intergenic 55.0%
GGTCTCCGTGTTATCTTCGG+TGG - chr7_1:67169697-67169716 None:intergenic 55.0%
AGTGTCCGCGATGCAACAGT+TGG + chr7_1:67169766-67169785 Msa1032230:CDS 55.0%
GTGTCCGCGATGCAACAGTT+GGG + chr7_1:67169767-67169786 Msa1032230:CDS 55.0%
GTGTCCCAACTGTTGCATCG+CGG - chr7_1:67169774-67169793 None:intergenic 55.0%
!! ATGTTCCGATAGGTGCTGGG+AGG + chr7_1:67169889-67169908 Msa1032230:CDS 55.0%
CGTGGTTGGAACTCCATTCG+TGG - chr7_1:67169961-67169980 None:intergenic 55.0%
CGAATGGAGTTCCAACCACG+AGG + chr7_1:67169961-67169980 Msa1032230:CDS 55.0%
CGATCACCACCACACATCCA+TGG + chr7_1:67170004-67170023 Msa1032230:CDS 55.0%
AGAGAGGAACCGTCCTTGTG+TGG + chr7_1:67170149-67170168 Msa1032230:CDS 55.0%
CGACTTCGGCATCCATGCAA+TGG + chr7_1:67170318-67170337 Msa1032230:CDS 55.0%
GGAAATGGCTCACCAACCCT+AGG + chr7_1:67170476-67170495 Msa1032230:CDS 55.0%
TCCGGCCAATTCTGGACCCA+TGG + chr7_1:67168491-67168510 Msa1032230:CDS 60.0%
!! TTCCGATAGGTGCTGGGAGG+CGG + chr7_1:67169892-67169911 Msa1032230:CDS 60.0%
TTCCGCCTCCCAGCACCTAT+CGG - chr7_1:67169897-67169916 None:intergenic 60.0%
TTGTAGAGGAAGGCGGCGAG+AGG - chr7_1:67170439-67170458 None:intergenic 60.0%
TCCGGCCAATTCTGGACCCA+TGG + chr7_1:67168491-67168510 Msa1032230:CDS 60.0%
!! TTCCGATAGGTGCTGGGAGG+CGG + chr7_1:67169892-67169911 Msa1032230:CDS 60.0%
TTCCGCCTCCCAGCACCTAT+CGG - chr7_1:67169897-67169916 None:intergenic 60.0%
TTGTAGAGGAAGGCGGCGAG+AGG - chr7_1:67170439-67170458 None:intergenic 60.0%
GGCGGCGAGAGGCAAAGTGA+TGG - chr7_1:67170428-67170447 None:intergenic 65.0%
GGCGGCGAGAGGCAAAGTGA+TGG - chr7_1:67170428-67170447 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 67168302 67170736 67168302 ID=Msa1032230;Name=Msa1032230
chr7_1 mRNA 67168302 67170736 67168302 ID=Msa1032230-mRNA-1;Parent=Msa1032230;Name=Msa1032230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=112|1|0.5|1|1|1|2|0|426
chr7_1 exon 67168302 67168512 67168302 ID=Msa1032230-mRNA-1:exon:15305;Parent=Msa1032230-mRNA-1
chr7_1 exon 67169555 67170736 67169555 ID=Msa1032230-mRNA-1:exon:15306;Parent=Msa1032230-mRNA-1
chr7_1 five_prime_UTR 67168302 67168413 67168302 ID=Msa1032230-mRNA-1:five_prime_utr;Parent=Msa1032230-mRNA-1
chr7_1 CDS 67168414 67168512 67168414 ID=Msa1032230-mRNA-1:cds;Parent=Msa1032230-mRNA-1
chr7_1 CDS 67169555 67170736 67169555 ID=Msa1032230-mRNA-1:cds;Parent=Msa1032230-mRNA-1
Gene Sequence

>Msa1032230

ATGAACATGTCTGAGACTGAGAAGGATCATGGTATTATGCTATTTGGTTGGAAGATTCCGGTGCCGGAATGTCCAATTCCGGCCAATTCTGGACCCATGGATACTTGCAGCAGTACAAGGAAAACAGAAGTGGAAATACCTTGTGCAGAAAAAACCGAGCAACAAGACAATTCTTCTGATTCAATGGATAGTAAACAAGAGTCTATACCAGAAAAGGAGCCAATAGTAAATTCCAAGCCCACCGAAGATAACACGGAGACCGGTAATACGGATCAAGATAAACTCTTAAAGAAACCAGACAAGATTGTTCAGTGTCCGCGATGCAACAGTTGGGACACCAAGTTTTGTTATTTCAACAACTATAACGTCAATCAACCTCGACATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACGATGAGAAATGTTCCGATAGGTGCTGGGAGGCGGAAGAATAAGCACCTAGCCTCTCAATACCGGCAAATTATAGTAACCACGAATGGAGTTCCAACCACGAGGCTAGAAACTACAAACTCATCCGATCACCACCACACATCCATGGATAACGAGACTGTATTGAAATTTGGTCCTGATACCCCTCTTTGCGAATCAATGGAATCGATGCTTCATCTTAGAGACCAGAAAAGAAGTGCTGATGCAAATTCAAACAGTTCTGTGCAACATAGAGAGGAACCGTCCTTGTGTGGATCTTCTGTAACAAACACTGGCAATCAAGGAAATGAAGTATCAGAACACAATGCATCAAATTGGTTGCAGTGTTATCCTGTTTCTCCATGGGTACTACCAATGAATCCAGGTTGGAATAATGTTGCTTCAATGGCAGCAATTCATCCGACTTCGGCATCCATGCAATGGTGTCCAACACCTATGTTGGCAATTCCAGGAATTCAGCCACAAAATATACCTTTACAACTTGTAGCAGCATCACATTGGAGTGGACCATCACTTTGCCTCTCGCCGCCTTCCTCTACAAGTAACAGTTGCTGCTCAGGAAATGGCTCACCAACCCTAGGAAAGCACAATAGAGATACATTTTTTGCAGATGAAGATAAAACAGACAAGTGTGTTCCGGTTCGAAAAACAATTAGAACTGATGTCACAGATGCAGTCTCGAAAAGTCCTATCCGGGCTACATTAGCTACCAAGAAGCCTAATGAAGAAGGAAAAGACGGTGTTTTGGGTGGCTCTCAGATTTTGGAAGCCAGCTCAGGAGCTATTTCTCATGCTCATACAATCCAGGAAAGCATATAA

Protein sequence

>Msa1032230

MNMSETEKDHGIMLFGWKIPVPECPIPANSGPMDTCSSTRKTEVEIPCAEKTEQQDNSSDSMDSKQESIPEKEPIVNSKPTEDNTETGNTDQDKLLKKPDKIVQCPRCNSWDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRQIIVTTNGVPTTRLETTNSSDHHHTSMDNETVLKFGPDTPLCESMESMLHLRDQKRSADANSNSSVQHREEPSLCGSSVTNTGNQGNEVSEHNASNWLQCYPVSPWVLPMNPGWNNVASMAAIHPTSASMQWCPTPMLAIPGIQPQNIPLQLVAASHWSGPSLCLSPPSSTSNSCCSGNGSPTLGKHNRDTFFADEDKTDKCVPVRKTIRTDVTDAVSKSPIRATLATKKPNEEGKDGVLGGSQILEASSGAISHAHTIQESI*