AlfalfaGEDB | Msa1118280

M. sativa cultivar zhongmu-4 / Msa1118280

KEGG: -
GO: -
PFAM: PF02701.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1118280	XP_003624725.3	95.775	426	16	1	1	426	1	424	0.0	845

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1118280	sp\|Q93ZL5\|CDF2_ARATH	37.097	372	176	15	40	393	77	408	1.67e-50	180

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1118280	A0A396H9C4	95.775	426	16	1	1	426	1	424	0.0	845

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1118280	TF	C2C2-Dof

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1032230	Msa1118280	0.881693	1.941844e-70	-8.615850e-47
Msa1072160	Msa1118280	0.882018	1.480347e-70	-8.615850e-47

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1118280	MtrunA17_Chr7g0254161	95.775	426	16	1	1	426	1	424	0.0	845
Msa1118280	MtrunA17_Chr6g0460731	50.267	374	139	9	8	350	10	367	4.61e-106	318
Msa1118280	MtrunA17_Chr6g0460721	46.939	343	143	9	8	335	10	328	6.57e-92	280
Msa1118280	MtrunA17_Chr6g0453321	34.545	495	223	17	8	425	5	475	2.76e-62	209
Msa1118280	MtrunA17_Chr8g0355261	33.051	472	226	15	5	426	8	439	3.44e-54	186
Msa1118280	MtrunA17_Chr7g0217581	35.811	444	204	15	38	425	164	582	7.72e-53	186
Msa1118280	MtrunA17_Chr4g0042481	31.633	490	231	16	8	424	5	463	1.10e-51	180
Msa1118280	MtrunA17_Chr3g0092111	34.358	358	187	8	83	421	116	444	7.99e-51	178
Msa1118280	MtrunA17_Chr2g0283811	56.000	100	37	1	97	196	41	133	3.92e-32	119
Msa1118280	MtrunA17_Chr5g0417571	65.116	86	24	1	86	165	121	206	1.04e-31	123

Showing 1 to 10 of 38 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1118280	AT5G39660.3	37.097	372	176	15	40	393	77	408	1.70e-51	180
Msa1118280	AT5G39660.1	37.097	372	176	15	40	393	77	408	1.70e-51	180
Msa1118280	AT5G39660.2	37.097	372	176	15	40	393	77	408	1.70e-51	180
Msa1118280	AT3G47500.1	31.546	485	234	15	3	426	1	448	7.99e-50	175
Msa1118280	AT5G62430.1	42.424	198	65	5	82	277	33	183	1.76e-37	138
Msa1118280	AT1G26790.1	45.143	175	88	5	1	169	5	177	1.78e-34	132
Msa1118280	AT1G29160.1	81.667	60	11	0	97	156	56	115	8.37e-33	122
Msa1118280	AT2G34140.1	64.198	81	29	0	97	177	52	132	1.47e-32	121
Msa1118280	AT1G69570.1	65.823	79	27	0	91	169	120	198	4.08e-32	126
Msa1118280	AT3G55370.1	57.143	70	30	0	99	168	72	141	8.91e-25	104

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

Find 117 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTATTATATGCTTTCC+TGG	0.315121	7_3:+66862535	None:intergenic
AACAGTTGCTGCTCAGGAAA+TGG	0.428682	7_3:-66862795	Msa1118280:CDS
AACGAGACTGTATTGAAATT+TGG	0.235896	7_3:-66863227	Msa1118280:CDS
AACTTGTAGCAGCATCACAT+TGG	0.575411	7_3:-66862860	Msa1118280:CDS
ACAAGAGTCTATACCAGAAA+AGG	0.468668	7_3:-66863606	Msa1118280:CDS
ACAAGTAACAGTTGCTGCTC+AGG	0.422483	7_3:-66862801	Msa1118280:CDS
ACACCTATGTTGGCAATTCC+AGG	0.386307	7_3:-66862909	Msa1118280:CDS
ACAGAAGATCCACACAAGGA+CGG	0.669016	7_3:+66863098	None:intergenic
ACCAAGAAGCCTAATGAAGA+AGG	0.504636	7_3:-66862630	Msa1118280:CDS
ACCATGGGTCCAGAATTGGC+CGG	0.674302	7_3:+66864745	None:intergenic

Showing 1 to 10 of 117 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GATCATGGTATTATGCTATT+TGG	-	chr7_3:66862677-66862696	Msa1118280:CDS	30.0%
GACTAAAGATTGTTATAGTC+CGG	+	chr7_3:66863056-66863075	None:intergenic	30.0%
GACCAATATGATGTAAACAA+AGG	-	chr7_3:66863130-66863149	Msa1118280:CDS	30.0%
CAATATGATGTAAACAAAGG+CGG	-	chr7_3:66863133-66863152	Msa1118280:CDS	30.0%
TCCAATAGAAGTAAAAGATC+AGG	-	chr7_3:66863552-66863571	Msa1118280:CDS	30.0%
TATTATGCTTGCAAAATTCG+AGG	-	chr7_3:66863593-66863612	Msa1118280:CDS	30.0%
ACAACAAATTCTCACATAAC+AGG	+	chr7_3:66863641-66863660	None:intergenic	30.0%
TAGACAGAGAAATGAAATCA+AGG	+	chr7_3:66863689-66863708	None:intergenic	30.0%
TCATTTCTCTGTCTATTCTT+AGG	-	chr7_3:66863694-66863713	Msa1118280:CDS	30.0%
AGACAATTCTTCTGATTCAA+TGG	-	chr7_3:66863840-66863859	Msa1118280:intron	30.0%

Showing 1 to 10 of 360 entries

Previous1 2 3 4 5…36Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	66862542	66864956	66862542	ID=Msa1118280;Name=Msa1118280
chr7_3	mRNA	66862542	66864956	66862542	ID=Msa1118280-mRNA-1;Parent=Msa1118280;Name=Msa1118280-mRNA-1;_AED=0.00;_eAED=0.00;_QI=111\|1\|0.5\|1\|1\|1\|2\|0\|426
chr7_3	exon	66862542	66863723	66862542	ID=Msa1118280-mRNA-1:exon:16290;Parent=Msa1118280-mRNA-1
chr7_3	exon	66864747	66864956	66864747	ID=Msa1118280-mRNA-1:exon:16289;Parent=Msa1118280-mRNA-1
chr7_3	five_prime_UTR	66864846	66864956	66864846	ID=Msa1118280-mRNA-1:five_prime_utr;Parent=Msa1118280-mRNA-1
chr7_3	CDS	66864747	66864845	66864747	ID=Msa1118280-mRNA-1:cds;Parent=Msa1118280-mRNA-1
chr7_3	CDS	66862542	66863723	66862542	ID=Msa1118280-mRNA-1:cds;Parent=Msa1118280-mRNA-1

Gene Sequence

>Msa1118280

ATGAACATGTCTCAGACTGAGAAGGATCATGGTATTATGCTATTTGGTTGGAAGATTCCGGTGCCGGAATGTCCAATTCCGGCCAATTCTGGACCCATGGATACTTGCAGCAGTACAAGGAAAACAGAAGTGGAAATACCTTGTGCAGAAAAAACCGAGCAACAAGACAATTCTTCTGATTCAATGGATAGTAAACAAGAGTCTATACCAGAAAAGGAGCCAATAGTAAATTCCAAGCCCACCGAAGATAACACGGAGACCGGTAATACGGATCAAGATAAACTCTTAAAGAAACCAGACAAGATTGTTCAGTGTCCGCGATGCAACAGTTGGGACACCAAGTTTTGTTATTTCAACAACTATAACGTCAATCAACCTCGACATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACGATGAGAAATGTTCCGATAGGTGCTGGGAGGCGGAAGAATAAGCACCTAGCCTCTCAATACCGGCAAATTATAGTAACCACGAATGGAGTTCCAACCACGAGGCTAGAAACTACAAACTCATCCGATCACCACCACACATCCATGGATAACGAGACTGTATTGAAATTTGGTCCTGATACCCCTCTTTACGAATCAATGGAATCGATGCTTCATCTTAGAGACCAGAAAAGAAGTGCTGATGCAAATTCAAACAGTTCTGTGCAACATAGAGAGGAACCGTCCTTGTGTGGATCTTCTGTAACAAACACCGGCAATCAAGGAAATGAAGTATCAGAACGCAATGCATCAAATTGGTTGCAGTGTTATCCTGTTTCTCCATGGGTACTACCAATGAATCCAGGTTGGAATAATGTTGCTTCAATGGCAGCAGTTCATCCGACTTCGGCATCCATGCAATGGTGTCCAACACCTATGTTGGCAATTCCAGGAATTCAGCCACAAAATATACCTTTACAACTTGTAGCAGCATCACATTGGAGTGGACCATCACTTTGCCTCTCGCCGCCTTCCTCTACAAGTAACAGTTGCTGCTCAGGAAATGGCTCACCAACCCTAGGAAAGCACAATAGAGATACAGTTTTCGCAGATGAAGATAAAACAGACAAGTGTGTTCCGGTTCGAAAAACAATTAGAACTGATGTCACAGATGCAGTCTCGAAAAGTCCTATCCGGGCTACATTAGCTACCAAGAAGCCTAATGAAGAAGGAAAAGACGGTGTTTTGGGTGGCTCTCAGATTTTGGAAGCCAGCTCAGGAGCTATTTCTCATGCTCATACAATCCAGGAAAGCATATAA

Protein sequence

>Msa1118280

MNMSQTEKDHGIMLFGWKIPVPECPIPANSGPMDTCSSTRKTEVEIPCAEKTEQQDNSSDSMDSKQESIPEKEPIVNSKPTEDNTETGNTDQDKLLKKPDKIVQCPRCNSWDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRQIIVTTNGVPTTRLETTNSSDHHHTSMDNETVLKFGPDTPLYESMESMLHLRDQKRSADANSNSSVQHREEPSLCGSSVTNTGNQGNEVSERNASNWLQCYPVSPWVLPMNPGWNNVASMAAVHPTSASMQWCPTPMLAIPGIQPQNIPLQLVAASHWSGPSLCLSPPSSTSNSCCSGNGSPTLGKHNRDTVFADEDKTDKCVPVRKTIRTDVTDAVSKSPIRATLATKKPNEEGKDGVLGGSQILEASSGAISHAHTIQESI*