AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1072160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072160 MtrunA17_Chr7g0254161 96.009 426 15 1 1 426 1 424 0.0 850
Msa1072160 MtrunA17_Chr6g0460731 50.535 374 138 9 8 350 10 367 4.28e-106 318
Msa1072160 MtrunA17_Chr6g0460721 47.230 343 142 9 8 335 10 328 8.50e-93 283
Msa1072160 MtrunA17_Chr6g0453321 35.000 500 223 18 3 425 1 475 4.54e-64 214
Msa1072160 MtrunA17_Chr4g0042481 32.323 495 230 17 3 424 1 463 1.16e-54 188
Msa1072160 MtrunA17_Chr7g0217581 36.036 444 203 15 38 425 164 582 2.63e-54 189
Msa1072160 MtrunA17_Chr8g0355261 32.770 473 226 14 5 426 8 439 4.62e-54 186
Msa1072160 MtrunA17_Chr3g0092111 34.078 358 188 8 83 421 116 444 1.76e-49 174
Msa1072160 MtrunA17_Chr2g0283811 56.000 100 37 1 97 196 41 133 4.98e-32 119
Msa1072160 MtrunA17_Chr5g0417571 65.116 86 24 1 86 165 121 206 1.14e-31 123
Msa1072160 MtrunA17_Chr5g0417551 31.594 345 127 15 97 426 121 371 3.24e-31 122
Msa1072160 MtrunA17_Chr5g0417561 30.117 342 136 11 97 426 113 363 1.04e-30 121
Msa1072160 MtrunA17_Chr5g0417601 69.014 71 22 0 86 156 123 193 2.96e-28 114
Msa1072160 MtrunA17_Chr8g0367161 51.807 83 39 1 77 158 5 87 7.93e-25 104
Msa1072160 MtrunA17_Chr3g0127201 55.556 81 30 1 77 157 7 81 8.02e-25 103
Msa1072160 MtrunA17_Chr8g0346551 61.905 63 24 0 98 160 19 81 9.85e-25 102
Msa1072160 MtrunA17_Chr8g0374251 57.534 73 31 0 103 175 68 140 1.82e-24 103
Msa1072160 MtrunA17_Chr8g0374111 38.462 130 55 3 58 187 3 107 6.03e-24 99.4
Msa1072160 MtrunA17_Chr4g0010151 65.517 58 20 0 99 156 78 135 6.48e-24 102
Msa1072160 MtrunA17_Chr2g0308011 73.469 49 13 0 103 151 37 85 6.70e-24 99.0
Msa1072160 MtrunA17_Chr2g0326001 66.102 59 20 0 98 156 35 93 1.20e-23 100
Msa1072160 MtrunA17_Chr2g0328021 56.000 75 33 0 82 156 41 115 1.75e-23 99.8
Msa1072160 MtrunA17_Chr4g0031411 37.903 124 74 2 90 211 60 182 2.69e-23 100
Msa1072160 MtrunA17_Chr4g0047001 70.909 55 16 0 104 158 56 110 3.64e-23 100
Msa1072160 MtrunA17_Chr8g0341671 69.231 52 16 0 103 154 20 71 4.91e-23 96.7
Msa1072160 MtrunA17_Chr4g0061761 67.925 53 17 0 101 153 38 90 6.74e-23 98.6
Msa1072160 MtrunA17_Chr4g0030051 62.121 66 24 1 91 155 28 93 1.95e-22 96.7
Msa1072160 MtrunA17_Chr1g0188851 51.899 79 33 1 82 155 17 95 2.16e-22 96.7
Msa1072160 MtrunA17_Chr2g0282441 59.375 64 26 0 91 154 13 76 2.86e-22 97.1
Msa1072160 MtrunA17_Chr7g0237921 38.760 129 66 2 91 217 62 179 3.16e-22 97.1
Msa1072160 MtrunA17_Chr7g0223311 69.091 55 16 1 104 157 78 132 2.04e-21 95.1
Msa1072160 MtrunA17_Chr5g0411951 65.455 55 19 0 99 153 39 93 2.06e-21 94.7
Msa1072160 MtrunA17_Chr2g0282051 67.857 56 17 1 103 158 46 100 2.48e-21 93.2
Msa1072160 MtrunA17_Chr3g0126201 67.308 52 17 0 105 156 53 104 3.94e-21 93.6
Msa1072160 MtrunA17_Chr2g0282511 69.388 49 15 0 103 151 45 93 6.54e-21 92.8
Msa1072160 MtrunA17_Chr1g0177251 67.308 52 17 0 105 156 14 65 7.25e-21 92.0
Msa1072160 MtrunA17_Chr4g0047761 66.071 56 18 1 103 158 72 126 7.95e-21 92.8
Msa1072160 MtrunA17_Chr3g0117601 58.065 62 25 1 93 153 50 111 2.39e-20 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072160 AT5G39660.3 36.828 372 177 14 40 393 77 408 4.86e-53 184
Msa1072160 AT5G39660.1 36.828 372 177 14 40 393 77 408 4.86e-53 184
Msa1072160 AT5G39660.2 36.828 372 177 14 40 393 77 408 4.86e-53 184
Msa1072160 AT3G47500.1 31.959 485 231 16 3 426 2 448 5.49e-50 176
Msa1072160 AT5G62430.1 36.462 277 80 8 3 277 1 183 1.12e-37 139
Msa1072160 AT1G26790.1 45.238 168 85 4 8 169 11 177 5.31e-34 130
Msa1072160 AT1G29160.1 81.667 60 11 0 97 156 56 115 8.99e-33 122
Msa1072160 AT2G34140.1 64.198 81 29 0 97 177 52 132 1.53e-32 121
Msa1072160 AT1G69570.1 65.823 79 27 0 91 169 120 198 4.20e-32 126
Msa1072160 AT3G55370.1 57.143 70 30 0 99 168 72 141 9.36e-25 104
Msa1072160 AT3G55370.2 57.143 70 30 0 99 168 72 141 1.21e-24 104
Msa1072160 AT3G55370.3 57.143 70 30 0 99 168 117 186 1.88e-24 104
Msa1072160 AT5G60850.1 54.762 84 32 2 103 186 51 128 2.90e-24 102
Msa1072160 AT5G60200.1 56.338 71 31 0 99 169 51 121 4.56e-24 100
Msa1072160 AT1G51700.1 69.231 52 16 0 103 154 33 84 5.51e-24 99.0
Msa1072160 AT4G24060.1 44.444 117 60 2 100 214 50 163 1.31e-23 101
Msa1072160 AT3G61850.2 64.407 59 21 0 98 156 57 115 1.67e-23 100
Msa1072160 AT3G61850.3 64.407 59 21 0 98 156 57 115 1.67e-23 100
Msa1072160 AT3G61850.1 64.407 59 21 0 98 156 69 127 2.24e-23 99.8
Msa1072160 AT3G61850.5 64.407 59 21 0 98 156 57 115 2.60e-23 100
Msa1072160 AT2G28810.2 66.071 56 19 0 99 154 73 128 3.12e-23 100
Msa1072160 AT3G61850.4 64.407 59 21 0 98 156 69 127 3.39e-23 100
Msa1072160 AT3G21270.1 69.811 53 16 0 103 155 29 81 3.54e-23 97.1
Msa1072160 AT2G28810.1 66.071 56 19 0 99 154 90 145 5.35e-23 99.8
Msa1072160 AT2G37590.1 63.793 58 21 0 99 156 85 142 6.33e-23 99.4
Msa1072160 AT3G45610.1 52.857 70 33 0 99 168 36 105 6.40e-23 97.4
Msa1072160 AT1G07640.1 69.091 55 16 1 103 156 21 75 1.24e-22 97.4
Msa1072160 AT1G07640.2 69.091 55 16 1 103 156 77 131 1.73e-22 98.2
Msa1072160 AT1G28310.1 68.519 54 17 0 103 156 27 80 2.23e-22 97.4
Msa1072160 AT4G00940.1 56.944 72 27 1 91 158 52 123 2.29e-22 97.1
Msa1072160 AT4G00940.3 56.944 72 27 1 91 158 52 123 2.29e-22 97.1
Msa1072160 AT4G00940.2 56.944 72 27 1 91 158 52 123 2.29e-22 97.1
Msa1072160 AT1G07640.3 69.091 55 16 1 103 156 85 139 2.51e-22 97.8
Msa1072160 AT5G65590.1 70.370 54 16 0 103 156 41 94 2.65e-22 97.4
Msa1072160 AT1G28310.2 68.519 54 17 0 103 156 51 104 3.14e-22 97.4
Msa1072160 AT5G02460.1 44.898 98 53 1 99 195 91 188 4.41e-22 97.8
Msa1072160 AT1G64620.1 65.385 52 18 0 100 151 46 97 6.31e-22 96.7
Msa1072160 AT3G50410.1 70.588 51 15 0 105 155 32 82 6.58e-22 94.7
Msa1072160 AT4G38000.1 66.071 56 18 1 102 156 40 95 7.86e-22 94.4
Msa1072160 AT5G66940.1 50.000 80 33 1 90 169 26 98 8.36e-22 94.0
Msa1072160 AT2G28510.1 66.071 56 19 0 105 160 50 105 1.63e-21 94.4
Msa1072160 AT4G21050.1 40.800 125 59 3 76 198 4 115 2.74e-21 92.0
Msa1072160 AT2G46590.1 62.264 53 20 0 98 150 63 115 1.27e-20 93.2
Msa1072160 AT3G52440.1 65.385 52 18 0 105 156 27 78 1.37e-20 90.9
Msa1072160 AT3G52440.2 65.385 52 18 0 105 156 46 97 1.53e-20 91.3
Msa1072160 AT2G46590.2 62.264 53 20 0 98 150 75 127 1.58e-20 92.8
Msa1072160 AT1G21340.1 66.000 50 17 0 105 154 40 89 3.34e-20 90.1
Msa1072160 AT1G47655.1 70.213 47 14 0 105 151 31 77 3.55e-20 89.0
Msa1072160 AT5G62940.1 57.812 64 26 1 91 153 60 123 9.11e-20 90.9
Msa1072160 AT4G21040.1 63.462 52 19 0 105 156 27 78 7.21e-18 82.8
Msa1072160 AT4G21080.1 57.895 57 24 0 105 161 27 83 2.65e-17 81.6
Msa1072160 AT4G21030.1 59.091 44 18 0 105 148 23 66 2.78e-11 62.8

Find 116 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCTTCATTAGGCTTCT+TGG 0.163517 7_2:+69143824 None:intergenic
TTTGGGTGGCTCTCAGATTT+TGG 0.205376 7_2:-69143790 Msa1072160:CDS
GATCATGGTATTATGCTATT+TGG 0.221788 7_2:-69146013 Msa1072160:CDS
AACGAGACTGTATTGAAATT+TGG 0.235896 7_2:-69144422 Msa1072160:CDS
TGTCCAATTCCGGCCAATTC+TGG 0.261036 7_2:-69145968 Msa1072160:CDS
AAAATTATTATATGCTTTCC+TGG 0.315121 7_2:+69143730 None:intergenic
GTGGGCTTGGAATTTACTAT+TGG 0.321756 7_2:+69144776 None:intergenic
GGTCCAGAATTGGCCGGAAT+TGG 0.321957 7_2:+69145965 None:intergenic
CGTGTTATCTTCGGTGGGCT+TGG 0.325634 7_2:+69144763 None:intergenic
TATCTCTATTGTGCTTTCCT+AGG 0.342762 7_2:+69143958 None:intergenic
GCTATTTGGTTGGAAGATTC+CGG 0.345460 7_2:-69145999 Msa1072160:CDS
GATTCGCAAAGAGGGGTATC+AGG 0.380348 7_2:+69144398 None:intergenic
GCAAGAACTGCCAAAGGTAT+TGG 0.383831 7_2:-69144607 Msa1072160:CDS
AGAAGGAAAAGACGGTGTTT+TGG 0.384688 7_2:-69143808 Msa1072160:CDS
ACACCTATGTTGGCAATTCC+AGG 0.386307 7_2:-69144104 Msa1072160:CDS
CAGAACACAATGCATCAAAT+TGG 0.395828 7_2:-69144238 Msa1072160:CDS
TTTATCTTGATCCGTATTAC+CGG 0.399758 7_2:+69144736 None:intergenic
GGTAGTACCCATGGAGAAAC+AGG 0.400241 7_2:+69144203 None:intergenic
TTGGAATAATGTTGCTTCAA+TGG 0.402306 7_2:-69144168 Msa1072160:CDS
TTATTCCAACCTGGATTCAT+TGG 0.406197 7_2:+69144182 None:intergenic
AGACAATTCTTCTGATTCAA+TGG 0.409932 7_2:-69144831 Msa1072160:CDS
TTGGCCGGAATTGGACATTC+CGG 0.413804 7_2:+69145974 None:intergenic
CACCAGCAGTCCAATACCTT+TGG 0.414239 7_2:+69144597 None:intergenic
TCGTGGTTACTATAATTTGC+CGG 0.419212 7_2:+69144510 None:intergenic
ACAAGTAACAGTTGCTGCTC+AGG 0.422483 7_2:-69143996 Msa1072160:CDS
GGACACTGAACAATCTTGTC+TGG 0.427093 7_2:+69144701 None:intergenic
AACAGTTGCTGCTCAGGAAA+TGG 0.428682 7_2:-69143990 Msa1072160:CDS
ATCTCTATTGTGCTTTCCTA+GGG 0.433575 7_2:+69143959 None:intergenic
CTATTGTGCTTTCCTAGGGT+TGG 0.437965 7_2:+69143963 None:intergenic
TAAAACAGACAAGTGTGTTC+CGG 0.446244 7_2:-69143916 Msa1072160:CDS
CAGTCTCGAAAAGTCCTATC+CGG 0.447133 7_2:-69143860 Msa1072160:CDS
ATGTACCATGGGTCCAGAAT+TGG 0.447645 7_2:+69145955 None:intergenic
ACCGGTCTCCGTGTTATCTT+CGG 0.448248 7_2:+69144754 None:intergenic
TTCCGATAGGTGCTGGGAGG+CGG 0.450898 7_2:-69144559 Msa1072160:CDS
AGAAATGTTCCGATAGGTGC+TGG 0.459160 7_2:-69144566 Msa1072160:CDS
GTAACAAACACTGGCAATCA+AGG 0.459236 7_2:-69144272 Msa1072160:CDS
ATGGTATTATGCTATTTGGT+TGG 0.461686 7_2:-69146009 Msa1072160:CDS
TGGTTGGAAGATTCCGGTGC+CGG 0.462466 7_2:-69145993 Msa1072160:CDS
TACCCCTCTTTGCGAATCAA+TGG 0.468240 7_2:-69144393 Msa1072160:CDS
ACAAGAGTCTATACCAGAAA+AGG 0.468668 7_2:-69144801 Msa1072160:CDS
TAACACGGAGACCGGTAATA+CGG 0.475853 7_2:-69144747 Msa1072160:CDS
GGTGCCGGAATGTCCAATTC+CGG 0.477329 7_2:-69145978 Msa1072160:CDS
GTGTTATCCTGTTTCTCCAT+GGG 0.479488 7_2:-69144210 Msa1072160:CDS
AGGATACTTGCAGCAGTACA+AGG 0.490268 7_2:-69144898 Msa1072160:CDS
AGTGTTATCCTGTTTCTCCA+TGG 0.495037 7_2:-69144211 Msa1072160:CDS
GGAATTGGACATTCCGGCAC+CGG 0.499395 7_2:+69145980 None:intergenic
TGCCAAAGGTATTGGACTGC+TGG 0.503181 7_2:-69144599 Msa1072160:CDS
ACCAAGAAGCCTAATGAAGA+AGG 0.504636 7_2:-69143825 Msa1072160:CDS
GTCTCCGTGTTATCTTCGGT+GGG 0.507024 7_2:+69144758 None:intergenic
AGAAGAATTGTCTTGTTGCT+CGG 0.510082 7_2:+69144841 None:intergenic
AGCACCTAGCCTCTCAATAC+CGG 0.512664 7_2:-69144529 Msa1072160:CDS
CGTGGTTGGAACTCCATTCG+TGG 0.513560 7_2:+69144493 None:intergenic
TTCTCATGCTCATACAATCC+AGG 0.520401 7_2:-69143748 Msa1072160:CDS
CAATACAGTCTCGTTATCCA+TGG 0.528405 7_2:+69144430 None:intergenic
TTCCGCCTCCCAGCACCTAT+CGG 0.529039 7_2:+69144557 None:intergenic
GTAGTTTCTAGCCTCGTGGT+TGG 0.531644 7_2:+69144479 None:intergenic
TATAATTTGCCGGTATTGAG+AGG 0.538214 7_2:+69144520 None:intergenic
ACCGAAGATAACACGGAGAC+CGG 0.539518 7_2:-69144755 Msa1072160:CDS
GGAATTGCCAACATAGGTGT+TGG 0.540068 7_2:+69144107 None:intergenic
GTGTCCGCGATGCAACAGTT+GGG 0.540349 7_2:-69144684 Msa1072160:CDS
GTTGTTGAAATAACAAAACT+TGG 0.540457 7_2:+69144658 None:intergenic
ATTCCATTGATTCGCAAAGA+GGG 0.549386 7_2:+69144390 None:intergenic
CGATCACCACCACACATCCA+TGG 0.550071 7_2:-69144447 Msa1072160:CDS
GGATTCATTGGTAGTACCCA+TGG 0.554215 7_2:+69144194 None:intergenic
GTAGCTAATGTAGCCCGGAT+AGG 0.554980 7_2:+69143846 None:intergenic
GGTCTCCGTGTTATCTTCGG+TGG 0.555105 7_2:+69144757 None:intergenic
ATGAGAAATAGCTCCTGAGC+TGG 0.556629 7_2:+69143764 None:intergenic
CATGGATGTGTGGTGGTGAT+CGG 0.559985 7_2:+69144448 None:intergenic
GGAAATGGCTCACCAACCCT+AGG 0.561749 7_2:-69143975 Msa1072160:CDS
TCTGAGACTGAGAAGGATCA+TGG 0.563095 7_2:-69146028 Msa1072160:CDS
CAGTTCTTGCAGAAATGTCG+AGG 0.563164 7_2:+69144620 None:intergenic
GGCAGCAATTCATCCGACTT+CGG 0.564105 7_2:-69144147 Msa1072160:CDS
CGACTTCGGCATCCATGCAA+TGG 0.568776 7_2:-69144133 Msa1072160:CDS
TCTTGGTAGCTAATGTAGCC+CGG 0.573000 7_2:+69143841 None:intergenic
AACTTGTAGCAGCATCACAT+TGG 0.575411 7_2:-69144055 Msa1072160:CDS
AGTGTCCGCGATGCAACAGT+TGG 0.576096 7_2:-69144685 Msa1072160:CDS
GATTCCATTGATTCGCAAAG+AGG 0.579861 7_2:+69144389 None:intergenic
CAAATTATAGTAACCACGAA+TGG 0.580675 7_2:-69144506 Msa1072160:CDS
TCCGGCCAATTCTGGACCCA+TGG 0.581876 7_2:-69145960 Msa1072160:intron
GCAGCAACTGTTACTTGTAG+AGG 0.584099 7_2:+69144001 None:intergenic
TGGGTACTACCAATGAATCC+AGG 0.586175 7_2:-69144191 Msa1072160:CDS
CATTGCATGGATGCCGAAGT+CGG 0.595329 7_2:+69144134 None:intergenic
AGTCTCGAAAAGTCCTATCC+GGG 0.597281 7_2:-69143859 Msa1072160:CDS
ATTCCTGGAATTGCCAACAT+AGG 0.597632 7_2:+69144101 None:intergenic
AGAGAGGAACCGTCCTTGTG+TGG 0.598119 7_2:-69144302 Msa1072160:CDS
TACTACCAATGAATCCAGGT+TGG 0.601762 7_2:-69144187 Msa1072160:CDS
CAGTTCTGTGCAACATAGAG+AGG 0.603480 7_2:-69144318 Msa1072160:CDS
GGATCTTCTGTAACAAACAC+TGG 0.604848 7_2:-69144281 Msa1072160:CDS
TTCCATTGATTCGCAAAGAG+GGG 0.609139 7_2:+69144391 None:intergenic
CCTAATGAAGAAGGAAAAGA+CGG 0.611817 7_2:-69143816 Msa1072160:CDS
GAAATGTTCCGATAGGTGCT+GGG 0.612734 7_2:-69144565 Msa1072160:CDS
GGCGGCGAGAGGCAAAGTGA+TGG 0.613227 7_2:+69144026 None:intergenic
GATGCTGCTACAAGTTGTAA+AGG 0.617256 7_2:+69144062 None:intergenic
CAGTACAAGGAAAACAGAAG+TGG 0.617838 7_2:-69144885 Msa1072160:CDS
GAACATGTCTGAGACTGAGA+AGG 0.619721 7_2:-69146035 Msa1072160:CDS
GAAGCAACATTATTCCAACC+TGG 0.621410 7_2:+69144173 None:intergenic
CAAAGGTATTGGACTGCTGG+TGG 0.623552 7_2:-69144596 Msa1072160:CDS
CAAGCCCACCGAAGATAACA+CGG 0.626181 7_2:-69144762 Msa1072160:CDS
TTGTAGAGGAAGGCGGCGAG+AGG 0.626239 7_2:+69144015 None:intergenic
TTTGCCGGTATTGAGAGGCT+AGG 0.626885 7_2:+69144525 None:intergenic
ATGGTGTCCAACACCTATGT+TGG 0.630522 7_2:-69144114 Msa1072160:CDS
CAACTGTTACTTGTAGAGGA+AGG 0.635921 7_2:+69144005 None:intergenic
GTTTGTAGTTTCTAGCCTCG+TGG 0.637790 7_2:+69144475 None:intergenic
AGGTGTTGGACACCATTGCA+TGG 0.641634 7_2:+69144121 None:intergenic
ACGATGAGAAATGTTCCGAT+AGG 0.643759 7_2:-69144572 Msa1072160:CDS
CGTTATCCATGGATGTGTGG+TGG 0.660626 7_2:+69144441 None:intergenic
ATTTCTGCAAGAACTGCCAA+AGG 0.665461 7_2:-69144613 Msa1072160:CDS
ACAGAAGATCCACACAAGGA+CGG 0.669016 7_2:+69144293 None:intergenic
ACCATGGGTCCAGAATTGGC+CGG 0.674302 7_2:+69145959 None:intergenic
GTAGCAGCATCACATTGGAG+TGG 0.674545 7_2:-69144050 Msa1072160:CDS
CTGTTACTTGTAGAGGAAGG+CGG 0.676133 7_2:+69144008 None:intergenic
TCTCGTTATCCATGGATGTG+TGG 0.680622 7_2:+69144438 None:intergenic
CGAATGGAGTTCCAACCACG+AGG 0.695228 7_2:-69144490 Msa1072160:CDS
GTGTCCCAACTGTTGCATCG+CGG 0.715720 7_2:+69144680 None:intergenic
TGTTACAGAAGATCCACACA+AGG 0.727736 7_2:+69144289 None:intergenic
ATGTTCCGATAGGTGCTGGG+AGG 0.729596 7_2:-69144562 Msa1072160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTGTTTGTTTTCTTA+TGG - chr7_2:69144080-69144099 Msa1072160:CDS 15.0%
!!! TATTTTGTTTGTTTTCTTAT+GGG - chr7_2:69144081-69144100 Msa1072160:CDS 15.0%
!!! AAATTGATTTTTGTAATTCT+TGG - chr7_2:69144522-69144541 Msa1072160:CDS 15.0%
!!! TTATTTTGTTTGTTTTCTTA+TGG - chr7_2:69144080-69144099 Msa1072160:CDS 15.0%
!!! TATTTTGTTTGTTTTCTTAT+GGG - chr7_2:69144081-69144100 Msa1072160:CDS 15.0%
!!! AAATTGATTTTTGTAATTCT+TGG - chr7_2:69144522-69144541 Msa1072160:CDS 15.0%
!!! CTGTTTTTATGTTTTTTTGA+AGG - chr7_2:69143793-69143812 Msa1072160:CDS 20.0%
!! TATAGTTATATATGTACCAT+GGG + chr7_2:69143945-69143964 None:intergenic 20.0%
!! TTATAGTTATATATGTACCA+TGG + chr7_2:69143946-69143965 None:intergenic 20.0%
!!! ATTTTGTTTGTTTTCTTATG+GGG - chr7_2:69144082-69144101 Msa1072160:CDS 20.0%
!!! TCTTTATGTTTTAATTGTGA+TGG - chr7_2:69144446-69144465 Msa1072160:CDS 20.0%
!!! TTTTTTATGATGATTTCTCT+TGG - chr7_2:69144623-69144642 Msa1072160:CDS 20.0%
!!! TAATTCGTGGTTTAAATTTT+AGG - chr7_2:69144968-69144987 Msa1072160:intron 20.0%
!!! CTGTTTTTATGTTTTTTTGA+AGG - chr7_2:69143793-69143812 Msa1072160:CDS 20.0%
!! TATAGTTATATATGTACCAT+GGG + chr7_2:69143945-69143964 None:intergenic 20.0%
!! TTATAGTTATATATGTACCA+TGG + chr7_2:69143946-69143965 None:intergenic 20.0%
!!! ATTTTGTTTGTTTTCTTATG+GGG - chr7_2:69144082-69144101 Msa1072160:CDS 20.0%
!!! TCTTTATGTTTTAATTGTGA+TGG - chr7_2:69144446-69144465 Msa1072160:CDS 20.0%
!!! TTTTTTATGATGATTTCTCT+TGG - chr7_2:69144623-69144642 Msa1072160:CDS 20.0%
!!! TAATTCGTGGTTTAAATTTT+AGG - chr7_2:69144968-69144987 Msa1072160:intron 20.0%
! AAACATAAAAACAGAAACAG+AGG + chr7_2:69143787-69143806 None:intergenic 25.0%
! TTGTATGTTGCATATGAAAA+TGG - chr7_2:69144035-69144054 Msa1072160:CDS 25.0%
! TGTATGTTGCATATGAAAAT+GGG - chr7_2:69144036-69144055 Msa1072160:CDS 25.0%
!!! AGGATAATTTTGTTTCTTAG+TGG - chr7_2:69144168-69144187 Msa1072160:CDS 25.0%
!!! ATAATTTTGTTTCTTAGTGG+AGG - chr7_2:69144171-69144190 Msa1072160:CDS 25.0%
! GACCAATATAATGTAAACAA+AGG - chr7_2:69144345-69144364 Msa1072160:CDS 25.0%
! CAATATAATGTAAACAAAGG+CGG - chr7_2:69144348-69144367 Msa1072160:CDS 25.0%
! ATTCATCAATCATCAATCAT+TGG + chr7_2:69144396-69144415 None:intergenic 25.0%
! CATTTGTACACTTAATTTCT+AGG - chr7_2:69144596-69144615 Msa1072160:CDS 25.0%
! GTTGTTGAAATAACAAAACT+TGG + chr7_2:69145231-69145250 None:intergenic 25.0%
!!! AGTTGTAAAGGTATATTTTG+TGG + chr7_2:69145815-69145834 None:intergenic 25.0%
! AAACATAAAAACAGAAACAG+AGG + chr7_2:69143787-69143806 None:intergenic 25.0%
! TTGTATGTTGCATATGAAAA+TGG - chr7_2:69144035-69144054 Msa1072160:CDS 25.0%
! TGTATGTTGCATATGAAAAT+GGG - chr7_2:69144036-69144055 Msa1072160:CDS 25.0%
!!! AGGATAATTTTGTTTCTTAG+TGG - chr7_2:69144168-69144187 Msa1072160:CDS 25.0%
!!! ATAATTTTGTTTCTTAGTGG+AGG - chr7_2:69144171-69144190 Msa1072160:CDS 25.0%
! GACCAATATAATGTAAACAA+AGG - chr7_2:69144345-69144364 Msa1072160:CDS 25.0%
! CAATATAATGTAAACAAAGG+CGG - chr7_2:69144348-69144367 Msa1072160:CDS 25.0%
! ATTCATCAATCATCAATCAT+TGG + chr7_2:69144396-69144415 None:intergenic 25.0%
! CATTTGTACACTTAATTTCT+AGG - chr7_2:69144596-69144615 Msa1072160:CDS 25.0%
! GTTGTTGAAATAACAAAACT+TGG + chr7_2:69145231-69145250 None:intergenic 25.0%
!!! AGTTGTAAAGGTATATTTTG+TGG + chr7_2:69145815-69145834 None:intergenic 25.0%
GATCATGGTATTATGCTATT+TGG - chr7_2:69143873-69143892 Msa1072160:CDS 30.0%
! ATGGTATTATGCTATTTGGT+TGG - chr7_2:69143877-69143896 Msa1072160:CDS 30.0%
!! CAAAATCTTCTGAAGTTTGA+AGG - chr7_2:69144148-69144167 Msa1072160:CDS 30.0%
!! GATTCATTTTAATGAGCTTG+AGG - chr7_2:69144209-69144228 Msa1072160:CDS 30.0%
!! ATTTTAATGAGCTTGAGGTA+AGG - chr7_2:69144214-69144233 Msa1072160:CDS 30.0%
GACTAAAGATTGTTATAGTC+CGG + chr7_2:69144271-69144290 None:intergenic 30.0%
! CGCCTTTGTTTACATTATAT+TGG + chr7_2:69144350-69144369 None:intergenic 30.0%
!!! GTTTTAATTGTGATGGAAGA+TGG - chr7_2:69144453-69144472 Msa1072160:CDS 30.0%
! ATGACTCTAAGAAAATGAAG+AGG + chr7_2:69144579-69144598 None:intergenic 30.0%
TCCAATAGAAGTAAAAGATC+AGG - chr7_2:69144767-69144786 Msa1072160:CDS 30.0%
! TCCTGATCTTTTACTTCTAT+TGG + chr7_2:69144771-69144790 None:intergenic 30.0%
TGTTATGCTTGCAAAATTTG+AGG - chr7_2:69144808-69144827 Msa1072160:CDS 30.0%
! AGGACACAAGTATAACTTTT+TGG + chr7_2:69144836-69144855 None:intergenic 30.0%
ACAACAAATTCTCACATAAC+AGG + chr7_2:69144856-69144875 None:intergenic 30.0%
TAGACAGAGAAATGAAATCA+AGG + chr7_2:69144904-69144923 None:intergenic 30.0%
TCATTTCTCTGTCTATTCTT+AGG - chr7_2:69144909-69144928 Msa1072160:intron 30.0%
CTTAGTTTATCACTAATTCG+TGG - chr7_2:69144955-69144974 Msa1072160:intron 30.0%
AGACAATTCTTCTGATTCAA+TGG - chr7_2:69145055-69145074 Msa1072160:intron 30.0%
TTTATCTTGATCCGTATTAC+CGG + chr7_2:69145153-69145172 None:intergenic 30.0%
CAAATTATAGTAACCACGAA+TGG - chr7_2:69145380-69145399 Msa1072160:intron 30.0%
AACGAGACTGTATTGAAATT+TGG - chr7_2:69145464-69145483 Msa1072160:intron 30.0%
! TTGGAATAATGTTGCTTCAA+TGG - chr7_2:69145718-69145737 Msa1072160:intron 30.0%
!! GTTCTAATTGTTTTTCGAAC+CGG + chr7_2:69145992-69146011 None:intergenic 30.0%
GATCATGGTATTATGCTATT+TGG - chr7_2:69143873-69143892 Msa1072160:CDS 30.0%
! ATGGTATTATGCTATTTGGT+TGG - chr7_2:69143877-69143896 Msa1072160:CDS 30.0%
!! CAAAATCTTCTGAAGTTTGA+AGG - chr7_2:69144148-69144167 Msa1072160:CDS 30.0%
!! GATTCATTTTAATGAGCTTG+AGG - chr7_2:69144209-69144228 Msa1072160:CDS 30.0%
!! ATTTTAATGAGCTTGAGGTA+AGG - chr7_2:69144214-69144233 Msa1072160:CDS 30.0%
GACTAAAGATTGTTATAGTC+CGG + chr7_2:69144271-69144290 None:intergenic 30.0%
! CGCCTTTGTTTACATTATAT+TGG + chr7_2:69144350-69144369 None:intergenic 30.0%
!!! GTTTTAATTGTGATGGAAGA+TGG - chr7_2:69144453-69144472 Msa1072160:CDS 30.0%
! ATGACTCTAAGAAAATGAAG+AGG + chr7_2:69144579-69144598 None:intergenic 30.0%
TCCAATAGAAGTAAAAGATC+AGG - chr7_2:69144767-69144786 Msa1072160:CDS 30.0%
! TCCTGATCTTTTACTTCTAT+TGG + chr7_2:69144771-69144790 None:intergenic 30.0%
TGTTATGCTTGCAAAATTTG+AGG - chr7_2:69144808-69144827 Msa1072160:CDS 30.0%
! AGGACACAAGTATAACTTTT+TGG + chr7_2:69144836-69144855 None:intergenic 30.0%
ACAACAAATTCTCACATAAC+AGG + chr7_2:69144856-69144875 None:intergenic 30.0%
TAGACAGAGAAATGAAATCA+AGG + chr7_2:69144904-69144923 None:intergenic 30.0%
TCATTTCTCTGTCTATTCTT+AGG - chr7_2:69144909-69144928 Msa1072160:intron 30.0%
CTTAGTTTATCACTAATTCG+TGG - chr7_2:69144955-69144974 Msa1072160:intron 30.0%
AGACAATTCTTCTGATTCAA+TGG - chr7_2:69145055-69145074 Msa1072160:intron 30.0%
TTTATCTTGATCCGTATTAC+CGG + chr7_2:69145153-69145172 None:intergenic 30.0%
CAAATTATAGTAACCACGAA+TGG - chr7_2:69145380-69145399 Msa1072160:intron 30.0%
AACGAGACTGTATTGAAATT+TGG - chr7_2:69145464-69145483 Msa1072160:intron 30.0%
! TTGGAATAATGTTGCTTCAA+TGG - chr7_2:69145718-69145737 Msa1072160:intron 30.0%
!! GTTCTAATTGTTTTTCGAAC+CGG + chr7_2:69145992-69146011 None:intergenic 30.0%
GAAGAAAGACATAAGCTGAA+AGG + chr7_2:69143992-69144011 None:intergenic 35.0%
TGTTGCATATGAAAATGGGT+TGG - chr7_2:69144040-69144059 Msa1072160:CDS 35.0%
!!! AATGGGTTGGACGTAAATTT+TGG - chr7_2:69144053-69144072 Msa1072160:CDS 35.0%
! TATGGGGTTGTTGAGATTTT+TGG - chr7_2:69144098-69144117 Msa1072160:CDS 35.0%
TAGTAATCCAGAGTTTAGCT+GGG + chr7_2:69144309-69144328 None:intergenic 35.0%
TGTAAACAAAGGCGGTATTT+AGG - chr7_2:69144356-69144375 Msa1072160:CDS 35.0%
TTGATGTGAACCAAAGGATT+TGG - chr7_2:69144546-69144565 Msa1072160:CDS 35.0%
! AAGATCAGGACTAGTGAAAT+AGG - chr7_2:69144781-69144800 Msa1072160:CDS 35.0%
! AGAAGAATTGTCTTGTTGCT+CGG + chr7_2:69145048-69145067 None:intergenic 35.0%
ACAAGAGTCTATACCAGAAA+AGG - chr7_2:69145085-69145104 Msa1072160:intron 35.0%
!!! TTTACTATTGGCTCCTTTTC+TGG + chr7_2:69145101-69145120 None:intergenic 35.0%
! TATAATTTGCCGGTATTGAG+AGG + chr7_2:69145369-69145388 None:intergenic 35.0%
! TCGTGGTTACTATAATTTGC+CGG + chr7_2:69145379-69145398 None:intergenic 35.0%
!! ATTCCATTGATTCGCAAAGA+GGG + chr7_2:69145499-69145518 None:intergenic 35.0%
CAGAACACAATGCATCAAAT+TGG - chr7_2:69145648-69145667 Msa1072160:intron 35.0%
TTATTCCAACCTGGATTCAT+TGG + chr7_2:69145707-69145726 None:intergenic 35.0%
! ATATTTTGTGGCTGAATTCC+TGG + chr7_2:69145803-69145822 None:intergenic 35.0%
ATCTCTATTGTGCTTTCCTA+GGG + chr7_2:69145930-69145949 None:intergenic 35.0%
TATCTCTATTGTGCTTTCCT+AGG + chr7_2:69145931-69145950 None:intergenic 35.0%
TAAAACAGACAAGTGTGTTC+CGG - chr7_2:69145970-69145989 Msa1072160:CDS 35.0%
CCTAATGAAGAAGGAAAAGA+CGG - chr7_2:69146070-69146089 Msa1072160:five_prime_UTR 35.0%
GAAGAAAGACATAAGCTGAA+AGG + chr7_2:69143992-69144011 None:intergenic 35.0%
TGTTGCATATGAAAATGGGT+TGG - chr7_2:69144040-69144059 Msa1072160:CDS 35.0%
!!! AATGGGTTGGACGTAAATTT+TGG - chr7_2:69144053-69144072 Msa1072160:CDS 35.0%
! TATGGGGTTGTTGAGATTTT+TGG - chr7_2:69144098-69144117 Msa1072160:CDS 35.0%
TAGTAATCCAGAGTTTAGCT+GGG + chr7_2:69144309-69144328 None:intergenic 35.0%
TGTAAACAAAGGCGGTATTT+AGG - chr7_2:69144356-69144375 Msa1072160:CDS 35.0%
TTGATGTGAACCAAAGGATT+TGG - chr7_2:69144546-69144565 Msa1072160:CDS 35.0%
! AAGATCAGGACTAGTGAAAT+AGG - chr7_2:69144781-69144800 Msa1072160:CDS 35.0%
! AGAAGAATTGTCTTGTTGCT+CGG + chr7_2:69145048-69145067 None:intergenic 35.0%
ACAAGAGTCTATACCAGAAA+AGG - chr7_2:69145085-69145104 Msa1072160:intron 35.0%
!!! TTTACTATTGGCTCCTTTTC+TGG + chr7_2:69145101-69145120 None:intergenic 35.0%
! TATAATTTGCCGGTATTGAG+AGG + chr7_2:69145369-69145388 None:intergenic 35.0%
! TCGTGGTTACTATAATTTGC+CGG + chr7_2:69145379-69145398 None:intergenic 35.0%
!! ATTCCATTGATTCGCAAAGA+GGG + chr7_2:69145499-69145518 None:intergenic 35.0%
CAGAACACAATGCATCAAAT+TGG - chr7_2:69145648-69145667 Msa1072160:intron 35.0%
TTATTCCAACCTGGATTCAT+TGG + chr7_2:69145707-69145726 None:intergenic 35.0%
! ATATTTTGTGGCTGAATTCC+TGG + chr7_2:69145803-69145822 None:intergenic 35.0%
ATCTCTATTGTGCTTTCCTA+GGG + chr7_2:69145930-69145949 None:intergenic 35.0%
TATCTCTATTGTGCTTTCCT+AGG + chr7_2:69145931-69145950 None:intergenic 35.0%
TAAAACAGACAAGTGTGTTC+CGG - chr7_2:69145970-69145989 Msa1072160:CDS 35.0%
CCTAATGAAGAAGGAAAAGA+CGG - chr7_2:69146070-69146089 Msa1072160:five_prime_UTR 35.0%
GCTATTTGGTTGGAAGATTC+CGG - chr7_2:69143887-69143906 Msa1072160:CDS 40.0%
!!! GGGTTGTTGAGATTTTTGGT+TGG - chr7_2:69144102-69144121 Msa1072160:CDS 40.0%
ACAAATTGTTCCGTAGAACC+CGG - chr7_2:69144237-69144256 Msa1072160:CDS 40.0%
TTATAGTCCGGATTCAAACC+CGG + chr7_2:69144259-69144278 None:intergenic 40.0%
CTAGTAATCCAGAGTTTAGC+TGG + chr7_2:69144310-69144329 None:intergenic 40.0%
TCTGGATTACTAGAGAGTAG+AGG - chr7_2:69144317-69144336 Msa1072160:CDS 40.0%
CTGGATTACTAGAGAGTAGA+GGG - chr7_2:69144318-69144337 Msa1072160:CDS 40.0%
CTTGGATTGATGTGAACCAA+AGG - chr7_2:69144540-69144559 Msa1072160:CDS 40.0%
AGGATCAAGACCAAATCCTT+TGG + chr7_2:69144559-69144578 None:intergenic 40.0%
! TCTGAGATAAGCAGAAGTTG+AGG - chr7_2:69144732-69144751 Msa1072160:CDS 40.0%
CAGTACAAGGAAAACAGAAG+TGG - chr7_2:69145001-69145020 Msa1072160:intron 40.0%
GTGGGCTTGGAATTTACTAT+TGG + chr7_2:69145113-69145132 None:intergenic 40.0%
ATTTCTGCAAGAACTGCCAA+AGG - chr7_2:69145273-69145292 Msa1072160:intron 40.0%
ACGATGAGAAATGTTCCGAT+AGG - chr7_2:69145314-69145333 Msa1072160:intron 40.0%
CAATACAGTCTCGTTATCCA+TGG + chr7_2:69145459-69145478 None:intergenic 40.0%
!! TTCCATTGATTCGCAAAGAG+GGG + chr7_2:69145498-69145517 None:intergenic 40.0%
!! GATTCCATTGATTCGCAAAG+AGG + chr7_2:69145500-69145519 None:intergenic 40.0%
! TTGCATCAGCACTTCTTTTC+TGG + chr7_2:69145541-69145560 None:intergenic 40.0%
TGTTACAGAAGATCCACACA+AGG + chr7_2:69145600-69145619 None:intergenic 40.0%
GGATCTTCTGTAACAAACAC+TGG - chr7_2:69145605-69145624 Msa1072160:intron 40.0%
GTAACAAACACTGGCAATCA+AGG - chr7_2:69145614-69145633 Msa1072160:intron 40.0%
! AGTGTTATCCTGTTTCTCCA+TGG - chr7_2:69145675-69145694 Msa1072160:intron 40.0%
! GTGTTATCCTGTTTCTCCAT+GGG - chr7_2:69145676-69145695 Msa1072160:intron 40.0%
TACTACCAATGAATCCAGGT+TGG - chr7_2:69145699-69145718 Msa1072160:intron 40.0%
GAAGCAACATTATTCCAACC+TGG + chr7_2:69145716-69145735 None:intergenic 40.0%
ATTCCTGGAATTGCCAACAT+AGG + chr7_2:69145788-69145807 None:intergenic 40.0%
GATGCTGCTACAAGTTGTAA+AGG + chr7_2:69145827-69145846 None:intergenic 40.0%
AACTTGTAGCAGCATCACAT+TGG - chr7_2:69145831-69145850 Msa1072160:intron 40.0%
! CAACTGTTACTTGTAGAGGA+AGG + chr7_2:69145884-69145903 None:intergenic 40.0%
ACCAAGAAGCCTAATGAAGA+AGG - chr7_2:69146061-69146080 Msa1072160:five_prime_UTR 40.0%
TCCTTCTTCATTAGGCTTCT+TGG + chr7_2:69146065-69146084 None:intergenic 40.0%
! CCGTCTTTTCCTTCTTCATT+AGG + chr7_2:69146073-69146092 None:intergenic 40.0%
! AGAAGGAAAAGACGGTGTTT+TGG - chr7_2:69146078-69146097 Msa1072160:five_prime_UTR 40.0%
! GAAGGAAAAGACGGTGTTTT+GGG - chr7_2:69146079-69146098 Msa1072160:five_prime_UTR 40.0%
TTCTCATGCTCATACAATCC+AGG - chr7_2:69146138-69146157 Msa1072160:five_prime_UTR 40.0%
GCTATTTGGTTGGAAGATTC+CGG - chr7_2:69143887-69143906 Msa1072160:CDS 40.0%
!!! GGGTTGTTGAGATTTTTGGT+TGG - chr7_2:69144102-69144121 Msa1072160:CDS 40.0%
ACAAATTGTTCCGTAGAACC+CGG - chr7_2:69144237-69144256 Msa1072160:CDS 40.0%
TTATAGTCCGGATTCAAACC+CGG + chr7_2:69144259-69144278 None:intergenic 40.0%
CTAGTAATCCAGAGTTTAGC+TGG + chr7_2:69144310-69144329 None:intergenic 40.0%
TCTGGATTACTAGAGAGTAG+AGG - chr7_2:69144317-69144336 Msa1072160:CDS 40.0%
CTGGATTACTAGAGAGTAGA+GGG - chr7_2:69144318-69144337 Msa1072160:CDS 40.0%
CTTGGATTGATGTGAACCAA+AGG - chr7_2:69144540-69144559 Msa1072160:CDS 40.0%
AGGATCAAGACCAAATCCTT+TGG + chr7_2:69144559-69144578 None:intergenic 40.0%
! TCTGAGATAAGCAGAAGTTG+AGG - chr7_2:69144732-69144751 Msa1072160:CDS 40.0%
CAGTACAAGGAAAACAGAAG+TGG - chr7_2:69145001-69145020 Msa1072160:intron 40.0%
GTGGGCTTGGAATTTACTAT+TGG + chr7_2:69145113-69145132 None:intergenic 40.0%
ATTTCTGCAAGAACTGCCAA+AGG - chr7_2:69145273-69145292 Msa1072160:intron 40.0%
ACGATGAGAAATGTTCCGAT+AGG - chr7_2:69145314-69145333 Msa1072160:intron 40.0%
CAATACAGTCTCGTTATCCA+TGG + chr7_2:69145459-69145478 None:intergenic 40.0%
!! TTCCATTGATTCGCAAAGAG+GGG + chr7_2:69145498-69145517 None:intergenic 40.0%
!! GATTCCATTGATTCGCAAAG+AGG + chr7_2:69145500-69145519 None:intergenic 40.0%
! TTGCATCAGCACTTCTTTTC+TGG + chr7_2:69145541-69145560 None:intergenic 40.0%
TGTTACAGAAGATCCACACA+AGG + chr7_2:69145600-69145619 None:intergenic 40.0%
GGATCTTCTGTAACAAACAC+TGG - chr7_2:69145605-69145624 Msa1072160:intron 40.0%
GTAACAAACACTGGCAATCA+AGG - chr7_2:69145614-69145633 Msa1072160:intron 40.0%
! AGTGTTATCCTGTTTCTCCA+TGG - chr7_2:69145675-69145694 Msa1072160:intron 40.0%
! GTGTTATCCTGTTTCTCCAT+GGG - chr7_2:69145676-69145695 Msa1072160:intron 40.0%
TACTACCAATGAATCCAGGT+TGG - chr7_2:69145699-69145718 Msa1072160:intron 40.0%
GAAGCAACATTATTCCAACC+TGG + chr7_2:69145716-69145735 None:intergenic 40.0%
ATTCCTGGAATTGCCAACAT+AGG + chr7_2:69145788-69145807 None:intergenic 40.0%
GATGCTGCTACAAGTTGTAA+AGG + chr7_2:69145827-69145846 None:intergenic 40.0%
AACTTGTAGCAGCATCACAT+TGG - chr7_2:69145831-69145850 Msa1072160:intron 40.0%
! CAACTGTTACTTGTAGAGGA+AGG + chr7_2:69145884-69145903 None:intergenic 40.0%
ACCAAGAAGCCTAATGAAGA+AGG - chr7_2:69146061-69146080 Msa1072160:five_prime_UTR 40.0%
TCCTTCTTCATTAGGCTTCT+TGG + chr7_2:69146065-69146084 None:intergenic 40.0%
! CCGTCTTTTCCTTCTTCATT+AGG + chr7_2:69146073-69146092 None:intergenic 40.0%
! AGAAGGAAAAGACGGTGTTT+TGG - chr7_2:69146078-69146097 Msa1072160:five_prime_UTR 40.0%
! GAAGGAAAAGACGGTGTTTT+GGG - chr7_2:69146079-69146098 Msa1072160:five_prime_UTR 40.0%
TTCTCATGCTCATACAATCC+AGG - chr7_2:69146138-69146157 Msa1072160:five_prime_UTR 40.0%
! GAACATGTCTGAGACTGAGA+AGG - chr7_2:69143851-69143870 Msa1072160:CDS 45.0%
! TCTGAGACTGAGAAGGATCA+TGG - chr7_2:69143858-69143877 Msa1072160:CDS 45.0%
ATGTACCATGGGTCCAGAAT+TGG + chr7_2:69143934-69143953 None:intergenic 45.0%
CAAATTGTTCCGTAGAACCC+GGG - chr7_2:69144238-69144257 Msa1072160:CDS 45.0%
TATAGTCCGGATTCAAACCC+GGG + chr7_2:69144258-69144277 None:intergenic 45.0%
CTTACTTCCCAGCTAAACTC+TGG - chr7_2:69144299-69144318 Msa1072160:CDS 45.0%
AGGATACTTGCAGCAGTACA+AGG - chr7_2:69144988-69145007 Msa1072160:intron 45.0%
!!! TGCTCGGTTTTTTCTGCACA+AGG + chr7_2:69145032-69145051 None:intergenic 45.0%
TAACACGGAGACCGGTAATA+CGG - chr7_2:69145139-69145158 Msa1072160:intron 45.0%
GGACACTGAACAATCTTGTC+TGG + chr7_2:69145188-69145207 None:intergenic 45.0%
CAGTTCTTGCAGAAATGTCG+AGG + chr7_2:69145269-69145288 None:intergenic 45.0%
! GCAAGAACTGCCAAAGGTAT+TGG - chr7_2:69145279-69145298 Msa1072160:intron 45.0%
AGAAATGTTCCGATAGGTGC+TGG - chr7_2:69145320-69145339 Msa1072160:intron 45.0%
GAAATGTTCCGATAGGTGCT+GGG - chr7_2:69145321-69145340 Msa1072160:intron 45.0%
!! GTTTGTAGTTTCTAGCCTCG+TGG + chr7_2:69145414-69145433 None:intergenic 45.0%
TCTCGTTATCCATGGATGTG+TGG + chr7_2:69145451-69145470 None:intergenic 45.0%
TACCCCTCTTTGCGAATCAA+TGG - chr7_2:69145493-69145512 Msa1072160:intron 45.0%
CAGTTCTGTGCAACATAGAG+AGG - chr7_2:69145568-69145587 Msa1072160:intron 45.0%
ACAGAAGATCCACACAAGGA+CGG + chr7_2:69145596-69145615 None:intergenic 45.0%
! GGATTCATTGGTAGTACCCA+TGG + chr7_2:69145695-69145714 None:intergenic 45.0%
TGGGTACTACCAATGAATCC+AGG - chr7_2:69145695-69145714 Msa1072160:intron 45.0%
ATGGTGTCCAACACCTATGT+TGG - chr7_2:69145772-69145791 Msa1072160:intron 45.0%
GGAATTGCCAACATAGGTGT+TGG + chr7_2:69145782-69145801 None:intergenic 45.0%
ACACCTATGTTGGCAATTCC+AGG - chr7_2:69145782-69145801 Msa1072160:intron 45.0%
! CTGTTACTTGTAGAGGAAGG+CGG + chr7_2:69145881-69145900 None:intergenic 45.0%
! GCAGCAACTGTTACTTGTAG+AGG + chr7_2:69145888-69145907 None:intergenic 45.0%
ACAAGTAACAGTTGCTGCTC+AGG - chr7_2:69145890-69145909 Msa1072160:intron 45.0%
AACAGTTGCTGCTCAGGAAA+TGG - chr7_2:69145896-69145915 Msa1072160:intron 45.0%
CTATTGTGCTTTCCTAGGGT+TGG + chr7_2:69145926-69145945 None:intergenic 45.0%
CAGTCTCGAAAAGTCCTATC+CGG - chr7_2:69146026-69146045 Msa1072160:CDS 45.0%
AGTCTCGAAAAGTCCTATCC+GGG - chr7_2:69146027-69146046 Msa1072160:CDS 45.0%
! TCTTGGTAGCTAATGTAGCC+CGG + chr7_2:69146048-69146067 None:intergenic 45.0%
! TTTGGGTGGCTCTCAGATTT+TGG - chr7_2:69146096-69146115 Msa1072160:five_prime_UTR 45.0%
ATGAGAAATAGCTCCTGAGC+TGG + chr7_2:69146125-69146144 None:intergenic 45.0%
! GAACATGTCTGAGACTGAGA+AGG - chr7_2:69143851-69143870 Msa1072160:CDS 45.0%
! TCTGAGACTGAGAAGGATCA+TGG - chr7_2:69143858-69143877 Msa1072160:CDS 45.0%
ATGTACCATGGGTCCAGAAT+TGG + chr7_2:69143934-69143953 None:intergenic 45.0%
CAAATTGTTCCGTAGAACCC+GGG - chr7_2:69144238-69144257 Msa1072160:CDS 45.0%
TATAGTCCGGATTCAAACCC+GGG + chr7_2:69144258-69144277 None:intergenic 45.0%
CTTACTTCCCAGCTAAACTC+TGG - chr7_2:69144299-69144318 Msa1072160:CDS 45.0%
AGGATACTTGCAGCAGTACA+AGG - chr7_2:69144988-69145007 Msa1072160:intron 45.0%
!!! TGCTCGGTTTTTTCTGCACA+AGG + chr7_2:69145032-69145051 None:intergenic 45.0%
TAACACGGAGACCGGTAATA+CGG - chr7_2:69145139-69145158 Msa1072160:intron 45.0%
GGACACTGAACAATCTTGTC+TGG + chr7_2:69145188-69145207 None:intergenic 45.0%
CAGTTCTTGCAGAAATGTCG+AGG + chr7_2:69145269-69145288 None:intergenic 45.0%
! GCAAGAACTGCCAAAGGTAT+TGG - chr7_2:69145279-69145298 Msa1072160:intron 45.0%
AGAAATGTTCCGATAGGTGC+TGG - chr7_2:69145320-69145339 Msa1072160:intron 45.0%
GAAATGTTCCGATAGGTGCT+GGG - chr7_2:69145321-69145340 Msa1072160:intron 45.0%
!! GTTTGTAGTTTCTAGCCTCG+TGG + chr7_2:69145414-69145433 None:intergenic 45.0%
TCTCGTTATCCATGGATGTG+TGG + chr7_2:69145451-69145470 None:intergenic 45.0%
TACCCCTCTTTGCGAATCAA+TGG - chr7_2:69145493-69145512 Msa1072160:intron 45.0%
CAGTTCTGTGCAACATAGAG+AGG - chr7_2:69145568-69145587 Msa1072160:intron 45.0%
ACAGAAGATCCACACAAGGA+CGG + chr7_2:69145596-69145615 None:intergenic 45.0%
! GGATTCATTGGTAGTACCCA+TGG + chr7_2:69145695-69145714 None:intergenic 45.0%
TGGGTACTACCAATGAATCC+AGG - chr7_2:69145695-69145714 Msa1072160:intron 45.0%
ATGGTGTCCAACACCTATGT+TGG - chr7_2:69145772-69145791 Msa1072160:intron 45.0%
GGAATTGCCAACATAGGTGT+TGG + chr7_2:69145782-69145801 None:intergenic 45.0%
ACACCTATGTTGGCAATTCC+AGG - chr7_2:69145782-69145801 Msa1072160:intron 45.0%
! CTGTTACTTGTAGAGGAAGG+CGG + chr7_2:69145881-69145900 None:intergenic 45.0%
! GCAGCAACTGTTACTTGTAG+AGG + chr7_2:69145888-69145907 None:intergenic 45.0%
ACAAGTAACAGTTGCTGCTC+AGG - chr7_2:69145890-69145909 Msa1072160:intron 45.0%
AACAGTTGCTGCTCAGGAAA+TGG - chr7_2:69145896-69145915 Msa1072160:intron 45.0%
CTATTGTGCTTTCCTAGGGT+TGG + chr7_2:69145926-69145945 None:intergenic 45.0%
CAGTCTCGAAAAGTCCTATC+CGG - chr7_2:69146026-69146045 Msa1072160:CDS 45.0%
AGTCTCGAAAAGTCCTATCC+GGG - chr7_2:69146027-69146046 Msa1072160:CDS 45.0%
! TCTTGGTAGCTAATGTAGCC+CGG + chr7_2:69146048-69146067 None:intergenic 45.0%
! TTTGGGTGGCTCTCAGATTT+TGG - chr7_2:69146096-69146115 Msa1072160:five_prime_UTR 45.0%
ATGAGAAATAGCTCCTGAGC+TGG + chr7_2:69146125-69146144 None:intergenic 45.0%
TTGGCCGGAATTGGACATTC+CGG + chr7_2:69143915-69143934 None:intergenic 50.0%
TGTCCAATTCCGGCCAATTC+TGG - chr7_2:69143918-69143937 Msa1072160:CDS 50.0%
GGATTCAAACCCGGGTTCTA+CGG + chr7_2:69144250-69144269 None:intergenic 50.0%
GTAGAACCCGGGTTTGAATC+CGG - chr7_2:69144249-69144268 Msa1072160:CDS 50.0%
CAAGCCCACCGAAGATAACA+CGG - chr7_2:69145124-69145143 Msa1072160:intron 50.0%
GTCTCCGTGTTATCTTCGGT+GGG + chr7_2:69145131-69145150 None:intergenic 50.0%
ACCGAAGATAACACGGAGAC+CGG - chr7_2:69145131-69145150 Msa1072160:intron 50.0%
ACCGGTCTCCGTGTTATCTT+CGG + chr7_2:69145135-69145154 None:intergenic 50.0%
!! TGCCAAAGGTATTGGACTGC+TGG - chr7_2:69145287-69145306 Msa1072160:intron 50.0%
CACCAGCAGTCCAATACCTT+TGG + chr7_2:69145292-69145311 None:intergenic 50.0%
!! CAAAGGTATTGGACTGCTGG+TGG - chr7_2:69145290-69145309 Msa1072160:intron 50.0%
AGCACCTAGCCTCTCAATAC+CGG - chr7_2:69145357-69145376 Msa1072160:intron 50.0%
! TTTGCCGGTATTGAGAGGCT+AGG + chr7_2:69145364-69145383 None:intergenic 50.0%
!! GTAGTTTCTAGCCTCGTGGT+TGG + chr7_2:69145410-69145429 None:intergenic 50.0%
! CATGGATGTGTGGTGGTGAT+CGG + chr7_2:69145441-69145460 None:intergenic 50.0%
CGTTATCCATGGATGTGTGG+TGG + chr7_2:69145448-69145467 None:intergenic 50.0%
!! GATTCGCAAAGAGGGGTATC+AGG + chr7_2:69145491-69145510 None:intergenic 50.0%
GGTAGTACCCATGGAGAAAC+AGG + chr7_2:69145686-69145705 None:intergenic 50.0%
GGCAGCAATTCATCCGACTT+CGG - chr7_2:69145739-69145758 Msa1072160:intron 50.0%
CATTGCATGGATGCCGAAGT+CGG + chr7_2:69145755-69145774 None:intergenic 50.0%
!! AGGTGTTGGACACCATTGCA+TGG + chr7_2:69145768-69145787 None:intergenic 50.0%
GTAGCAGCATCACATTGGAG+TGG - chr7_2:69145836-69145855 Msa1072160:intron 50.0%
GTAGCTAATGTAGCCCGGAT+AGG + chr7_2:69146043-69146062 None:intergenic 50.0%
!! GGAAAAGACGGTGTTTTGGG+TGG - chr7_2:69146082-69146101 Msa1072160:five_prime_UTR 50.0%
!! CAGATTTTGGAAGCCAGCTC+AGG - chr7_2:69146109-69146128 Msa1072160:five_prime_UTR 50.0%
TTGGCCGGAATTGGACATTC+CGG + chr7_2:69143915-69143934 None:intergenic 50.0%
TGTCCAATTCCGGCCAATTC+TGG - chr7_2:69143918-69143937 Msa1072160:CDS 50.0%
GGATTCAAACCCGGGTTCTA+CGG + chr7_2:69144250-69144269 None:intergenic 50.0%
GTAGAACCCGGGTTTGAATC+CGG - chr7_2:69144249-69144268 Msa1072160:CDS 50.0%
CAAGCCCACCGAAGATAACA+CGG - chr7_2:69145124-69145143 Msa1072160:intron 50.0%
GTCTCCGTGTTATCTTCGGT+GGG + chr7_2:69145131-69145150 None:intergenic 50.0%
ACCGAAGATAACACGGAGAC+CGG - chr7_2:69145131-69145150 Msa1072160:intron 50.0%
ACCGGTCTCCGTGTTATCTT+CGG + chr7_2:69145135-69145154 None:intergenic 50.0%
!! TGCCAAAGGTATTGGACTGC+TGG - chr7_2:69145287-69145306 Msa1072160:intron 50.0%
CACCAGCAGTCCAATACCTT+TGG + chr7_2:69145292-69145311 None:intergenic 50.0%
!! CAAAGGTATTGGACTGCTGG+TGG - chr7_2:69145290-69145309 Msa1072160:intron 50.0%
AGCACCTAGCCTCTCAATAC+CGG - chr7_2:69145357-69145376 Msa1072160:intron 50.0%
! TTTGCCGGTATTGAGAGGCT+AGG + chr7_2:69145364-69145383 None:intergenic 50.0%
!! GTAGTTTCTAGCCTCGTGGT+TGG + chr7_2:69145410-69145429 None:intergenic 50.0%
! CATGGATGTGTGGTGGTGAT+CGG + chr7_2:69145441-69145460 None:intergenic 50.0%
CGTTATCCATGGATGTGTGG+TGG + chr7_2:69145448-69145467 None:intergenic 50.0%
!! GATTCGCAAAGAGGGGTATC+AGG + chr7_2:69145491-69145510 None:intergenic 50.0%
GGTAGTACCCATGGAGAAAC+AGG + chr7_2:69145686-69145705 None:intergenic 50.0%
GGCAGCAATTCATCCGACTT+CGG - chr7_2:69145739-69145758 Msa1072160:intron 50.0%
CATTGCATGGATGCCGAAGT+CGG + chr7_2:69145755-69145774 None:intergenic 50.0%
!! AGGTGTTGGACACCATTGCA+TGG + chr7_2:69145768-69145787 None:intergenic 50.0%
GTAGCAGCATCACATTGGAG+TGG - chr7_2:69145836-69145855 Msa1072160:intron 50.0%
GTAGCTAATGTAGCCCGGAT+AGG + chr7_2:69146043-69146062 None:intergenic 50.0%
!! GGAAAAGACGGTGTTTTGGG+TGG - chr7_2:69146082-69146101 Msa1072160:five_prime_UTR 50.0%
!! CAGATTTTGGAAGCCAGCTC+AGG - chr7_2:69146109-69146128 Msa1072160:five_prime_UTR 50.0%
TGGTTGGAAGATTCCGGTGC+CGG - chr7_2:69143893-69143912 Msa1072160:CDS 55.0%
GGAATTGGACATTCCGGCAC+CGG + chr7_2:69143909-69143928 None:intergenic 55.0%
! GGTGCCGGAATGTCCAATTC+CGG - chr7_2:69143908-69143927 Msa1072160:CDS 55.0%
GGTCCAGAATTGGCCGGAAT+TGG + chr7_2:69143924-69143943 None:intergenic 55.0%
ACCATGGGTCCAGAATTGGC+CGG + chr7_2:69143930-69143949 None:intergenic 55.0%
! CGTGTTATCTTCGGTGGGCT+TGG + chr7_2:69145126-69145145 None:intergenic 55.0%
GGTCTCCGTGTTATCTTCGG+TGG + chr7_2:69145132-69145151 None:intergenic 55.0%
AGTGTCCGCGATGCAACAGT+TGG - chr7_2:69145201-69145220 Msa1072160:intron 55.0%
GTGTCCGCGATGCAACAGTT+GGG - chr7_2:69145202-69145221 Msa1072160:intron 55.0%
GTGTCCCAACTGTTGCATCG+CGG + chr7_2:69145209-69145228 None:intergenic 55.0%
!! ATGTTCCGATAGGTGCTGGG+AGG - chr7_2:69145324-69145343 Msa1072160:intron 55.0%
CGTGGTTGGAACTCCATTCG+TGG + chr7_2:69145396-69145415 None:intergenic 55.0%
CGAATGGAGTTCCAACCACG+AGG - chr7_2:69145396-69145415 Msa1072160:intron 55.0%
CGATCACCACCACACATCCA+TGG - chr7_2:69145439-69145458 Msa1072160:intron 55.0%
AGAGAGGAACCGTCCTTGTG+TGG - chr7_2:69145584-69145603 Msa1072160:intron 55.0%
CGACTTCGGCATCCATGCAA+TGG - chr7_2:69145753-69145772 Msa1072160:intron 55.0%
GGAAATGGCTCACCAACCCT+AGG - chr7_2:69145911-69145930 Msa1072160:intron 55.0%
TGGTTGGAAGATTCCGGTGC+CGG - chr7_2:69143893-69143912 Msa1072160:CDS 55.0%
GGAATTGGACATTCCGGCAC+CGG + chr7_2:69143909-69143928 None:intergenic 55.0%
! GGTGCCGGAATGTCCAATTC+CGG - chr7_2:69143908-69143927 Msa1072160:CDS 55.0%
GGTCCAGAATTGGCCGGAAT+TGG + chr7_2:69143924-69143943 None:intergenic 55.0%
ACCATGGGTCCAGAATTGGC+CGG + chr7_2:69143930-69143949 None:intergenic 55.0%
! CGTGTTATCTTCGGTGGGCT+TGG + chr7_2:69145126-69145145 None:intergenic 55.0%
GGTCTCCGTGTTATCTTCGG+TGG + chr7_2:69145132-69145151 None:intergenic 55.0%
AGTGTCCGCGATGCAACAGT+TGG - chr7_2:69145201-69145220 Msa1072160:intron 55.0%
GTGTCCGCGATGCAACAGTT+GGG - chr7_2:69145202-69145221 Msa1072160:intron 55.0%
GTGTCCCAACTGTTGCATCG+CGG + chr7_2:69145209-69145228 None:intergenic 55.0%
!! ATGTTCCGATAGGTGCTGGG+AGG - chr7_2:69145324-69145343 Msa1072160:intron 55.0%
CGTGGTTGGAACTCCATTCG+TGG + chr7_2:69145396-69145415 None:intergenic 55.0%
CGAATGGAGTTCCAACCACG+AGG - chr7_2:69145396-69145415 Msa1072160:intron 55.0%
CGATCACCACCACACATCCA+TGG - chr7_2:69145439-69145458 Msa1072160:intron 55.0%
AGAGAGGAACCGTCCTTGTG+TGG - chr7_2:69145584-69145603 Msa1072160:intron 55.0%
CGACTTCGGCATCCATGCAA+TGG - chr7_2:69145753-69145772 Msa1072160:intron 55.0%
GGAAATGGCTCACCAACCCT+AGG - chr7_2:69145911-69145930 Msa1072160:intron 55.0%
TCCGGCCAATTCTGGACCCA+TGG - chr7_2:69143926-69143945 Msa1072160:CDS 60.0%
!! TTCCGATAGGTGCTGGGAGG+CGG - chr7_2:69145327-69145346 Msa1072160:intron 60.0%
TTCCGCCTCCCAGCACCTAT+CGG + chr7_2:69145332-69145351 None:intergenic 60.0%
TTGTAGAGGAAGGCGGCGAG+AGG + chr7_2:69145874-69145893 None:intergenic 60.0%
TCCGGCCAATTCTGGACCCA+TGG - chr7_2:69143926-69143945 Msa1072160:CDS 60.0%
!! TTCCGATAGGTGCTGGGAGG+CGG - chr7_2:69145327-69145346 Msa1072160:intron 60.0%
TTCCGCCTCCCAGCACCTAT+CGG + chr7_2:69145332-69145351 None:intergenic 60.0%
TTGTAGAGGAAGGCGGCGAG+AGG + chr7_2:69145874-69145893 None:intergenic 60.0%
GGCGGCGAGAGGCAAAGTGA+TGG + chr7_2:69145863-69145882 None:intergenic 65.0%
GGCGGCGAGAGGCAAAGTGA+TGG + chr7_2:69145863-69145882 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 69143737 69146171 69143737 ID=Msa1072160;Name=Msa1072160
chr7_2 mRNA 69143737 69146171 69143737 ID=Msa1072160-mRNA-1;Parent=Msa1072160;Name=Msa1072160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=112|1|0.5|1|1|1|2|0|426
chr7_2 exon 69143737 69144918 69143737 ID=Msa1072160-mRNA-1:exon:15303;Parent=Msa1072160-mRNA-1
chr7_2 exon 69145961 69146171 69145961 ID=Msa1072160-mRNA-1:exon:15302;Parent=Msa1072160-mRNA-1
chr7_2 five_prime_UTR 69146060 69146171 69146060 ID=Msa1072160-mRNA-1:five_prime_utr;Parent=Msa1072160-mRNA-1
chr7_2 CDS 69145961 69146059 69145961 ID=Msa1072160-mRNA-1:cds;Parent=Msa1072160-mRNA-1
chr7_2 CDS 69143737 69144918 69143737 ID=Msa1072160-mRNA-1:cds;Parent=Msa1072160-mRNA-1
Gene Sequence

>Msa1072160

ATGAACATGTCTGAGACTGAGAAGGATCATGGTATTATGCTATTTGGTTGGAAGATTCCGGTGCCGGAATGTCCAATTCCGGCCAATTCTGGACCCATGGATACTTGCAGCAGTACAAGGAAAACAGAAGTGGAAATACCTTGTGCAGAAAAAACCGAGCAACAAGACAATTCTTCTGATTCAATGGATAGCAAACAAGAGTCTATACCAGAAAAGGAGCCAATAGTAAATTCCAAGCCCACCGAAGATAACACGGAGACCGGTAATACGGATCAAGATAAACTCTTAAAGAAACCAGACAAGATTGTTCAGTGTCCGCGATGCAACAGTTGGGACACCAAGTTTTGTTATTTCAACAACTATAACGTCAATCAACCTCGACATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACGATGAGAAATGTTCCGATAGGTGCTGGGAGGCGGAAGAATAAGCACCTAGCCTCTCAATACCGGCAAATTATAGTAACCACGAATGGAGTTCCAACCACGAGGCTAGAAACTACAAACTCATCCGATCACCACCACACATCCATGGATAACGAGACTGTATTGAAATTTGGTCCTGATACCCCTCTTTGCGAATCAATGGAATCGATGCTTCATCTTAGAGACCAGAAAAGAAGTGCTGATGCAAATTCAAACAGTTCTGTGCAACATAGAGAGGAACCGTCCTTGTGTGGATCTTCTGTAACAAACACTGGCAATCAAGGAAATGAAGTATCAGAACACAATGCATCAAATTGGTTGCAGTGTTATCCTGTTTCTCCATGGGTACTACCAATGAATCCAGGTTGGAATAATGTTGCTTCAATGGCAGCAATTCATCCGACTTCGGCATCCATGCAATGGTGTCCAACACCTATGTTGGCAATTCCAGGAATTCAGCCACAAAATATACCTTTACAACTTGTAGCAGCATCACATTGGAGTGGACCATCACTTTGCCTCTCGCCGCCTTCCTCTACAAGTAACAGTTGCTGCTCAGGAAATGGCTCACCAACCCTAGGAAAGCACAATAGAGATACATTTTTCGCAGATGAAGATAAAACAGACAAGTGTGTTCCGGTTCGAAAAACAATTAGAACTGATGTCACAGATGCAGTCTCGAAAAGTCCTATCCGGGCTACATTAGCTACCAAGAAGCCTAATGAAGAAGGAAAAGACGGTGTTTTGGGTGGCTCTCAGATTTTGGAAGCCAGCTCAGGAGCTATTTCTCATGCTCATACAATCCAGGAAAGCATATAA
Protein sequence

>Msa1072160

MNMSETEKDHGIMLFGWKIPVPECPIPANSGPMDTCSSTRKTEVEIPCAEKTEQQDNSSDSMDSKQESIPEKEPIVNSKPTEDNTETGNTDQDKLLKKPDKIVQCPRCNSWDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRQIIVTTNGVPTTRLETTNSSDHHHTSMDNETVLKFGPDTPLCESMESMLHLRDQKRSADANSNSSVQHREEPSLCGSSVTNTGNQGNEVSEHNASNWLQCYPVSPWVLPMNPGWNNVASMAAIHPTSASMQWCPTPMLAIPGIQPQNIPLQLVAASHWSGPSLCLSPPSSTSNSCCSGNGSPTLGKHNRDTFFADEDKTDKCVPVRKTIRTDVTDAVSKSPIRATLATKKPNEEGKDGVLGGSQILEASSGAISHAHTIQESI*