Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1033900 | TKY62667.1 | 59.398 | 133 | 48 | 3 | 1 | 129 | 1 | 131 | 3.13e-40 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1033900 | A0A4D6M6X5 | 49.682 | 157 | 58 | 3 | 1 | 136 | 1 | 157 | 3.66e-36 | 132 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1033900 | Msa1073810 | 0.891480 | 3.822254e-74 | -8.615850e-47 |
| Msa1033900 | Msa1160020 | 0.830670 | 2.576751e-55 | -8.615850e-47 |
| Msa1033900 | Msa1305520 | 0.807022 | 6.192249e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1033900 | MtrunA17_Chr7g0256821 | 95.000 | 60 | 3 | 0 | 1 | 60 | 1 | 60 | 3.85e-35 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 34 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTTGGGTCCTCCCCTTT+TGG | 0.258816 | 7_1:+69204328 | None:intergenic |
| AAGAGTGTAAGTTATATTAT+AGG | 0.287207 | 7_1:+69205598 | None:intergenic |
| TGCCTTGTGTGCCTATTTCT+AGG | 0.287616 | 7_1:+69203978 | None:intergenic |
| GTCAAATTCCTCCTAGAAAT+AGG | 0.323437 | 7_1:-69203989 | Msa1033900:three_prime_UTR |
| ACAATACTTGATTCATGAAA+TGG | 0.333532 | 7_1:-69204589 | Msa1033900:intron |
| AGACAAACATAATTAAATTA+AGG | 0.347789 | 7_1:+69204072 | None:intergenic |
| GAAAGAAGATATCACAAGTT+TGG | 0.358833 | 7_1:+69205562 | None:intergenic |
| TTAAGGTACTTTAAATATCA+TGG | 0.365347 | 7_1:+69204089 | None:intergenic |
| TGTGTGCCTCCTGGCTATTA+TGG | 0.366912 | 7_1:-69204389 | Msa1033900:CDS |
| TTTGCCCTTGCTACAACAAC+TGG | 0.381953 | 7_1:-69204355 | Msa1033900:CDS |
| AAAAGTCTAGCGCAAGCTAT+TGG | 0.424002 | 7_1:-69204249 | Msa1033900:CDS |
| GTCTTCCAGTTGTTGTAGCA+AGG | 0.436792 | 7_1:+69204350 | None:intergenic |
| AAGTGTTTGTGTGTGCCTCC+TGG | 0.437793 | 7_1:-69204398 | Msa1033900:CDS |
| TTTGTTGGGAAGACAAAGAT+TGG | 0.441929 | 7_1:-69205692 | Msa1033900:five_prime_UTR |
| ACAACAACTGGAAGACCAAA+AGG | 0.460886 | 7_1:-69204343 | Msa1033900:CDS |
| CAACAACTGGAAGACCAAAA+GGG | 0.528864 | 7_1:-69204342 | Msa1033900:CDS |
| TGCTTGTTGCCATAATAGCC+AGG | 0.534265 | 7_1:+69204380 | None:intergenic |
| GAAGAAGCAGCATTTGAACT+AGG | 0.542882 | 7_1:+69205494 | None:intergenic |
| TCTTCCAGTTGTTGTAGCAA+GGG | 0.549133 | 7_1:+69204351 | None:intergenic |
| TGGCTATTATGGCAACAAGC+AGG | 0.551960 | 7_1:-69204378 | Msa1033900:CDS |
| TTGTGGAGCTGGAGCCTCAA+CGG | 0.577216 | 7_1:+69204897 | None:intergenic |
| TTTCAGCATGGCATCACTGA+AGG | 0.581824 | 7_1:-69204636 | Msa1033900:intron |
| TTGTTACAAAAGAATAAGCA+TGG | 0.618630 | 7_1:+69204431 | None:intergenic |
| AACAACTGGAAGACCAAAAG+GGG | 0.622992 | 7_1:-69204341 | Msa1033900:CDS |
| CTTGTGTGCCTATTTCTAGG+AGG | 0.628466 | 7_1:+69203981 | None:intergenic |
| AATTGTTGTGTCCACCGTTG+AGG | 0.638248 | 7_1:-69204911 | Msa1033900:CDS |
| AAGTATTGTTTGTTACCTTG+TGG | 0.639506 | 7_1:+69204603 | None:intergenic |
| AACTGGAAGACCAAAAGGGG+AGG | 0.643524 | 7_1:-69204338 | Msa1033900:CDS |
| GTGCTTGTACATATATTGAG+TGG | 0.644083 | 7_1:+69204150 | None:intergenic |
| AGTTATATTATAGGCAGACG+AGG | 0.662886 | 7_1:+69205607 | None:intergenic |
| TGGAGCTGGAGCCTCAACGG+TGG | 0.663602 | 7_1:+69204900 | None:intergenic |
| GAGCATCTATTAGTGCATCG+TGG | 0.712242 | 7_1:+69204473 | None:intergenic |
| GAAGGCAGTCTTCAACCACA+AGG | 0.744634 | 7_1:-69204618 | Msa1033900:CDS |
| TTGTTGCCATAATAGCCAGG+AGG | 0.777087 | 7_1:+69204383 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACCTTTTTTTTTTTTTTT+TGG | + | chr7_1:69204947-69204966 | None:intergenic | 10.0% |
| !!! | ATAATGTTTAAAACTTTTAA+GGG | + | chr7_1:69205407-69205426 | None:intergenic | 10.0% |
| !!! | AATTTTTGTCTTATATTTTA+AGG | + | chr7_1:69205685-69205704 | None:intergenic | 10.0% |
| !!! | AAACCTTTTTTTTTTTTTTT+TGG | + | chr7_1:69204947-69204966 | None:intergenic | 10.0% |
| !!! | ATAATGTTTAAAACTTTTAA+GGG | + | chr7_1:69205407-69205426 | None:intergenic | 10.0% |
| !!! | AATTTTTGTCTTATATTTTA+AGG | + | chr7_1:69205685-69205704 | None:intergenic | 10.0% |
| !!! | CATGTTTTTTCTTTAAAATA+TGG | - | chr7_1:69204628-69204647 | Msa1033900:CDS | 15.0% |
| !!! | ATTTTCATATTTTCTGTTTT+AGG | - | chr7_1:69204903-69204922 | Msa1033900:CDS | 15.0% |
| !! | ACTCCAAAAAAAAAAAAAAA+AGG | - | chr7_1:69204941-69204960 | Msa1033900:intron | 15.0% |
| !!! | TTTGATGATGAAATTAATAT+TGG | - | chr7_1:69205169-69205188 | Msa1033900:intron | 15.0% |
| !!! | GATAATGTTTAAAACTTTTA+AGG | + | chr7_1:69205408-69205427 | None:intergenic | 15.0% |
| !!! | GTAATATAACATTCTTTTAT+CGG | + | chr7_1:69205541-69205560 | None:intergenic | 15.0% |
| !! | AGACAAACATAATTAAATTA+AGG | + | chr7_1:69205641-69205660 | None:intergenic | 15.0% |
| !!! | CATGTTTTTTCTTTAAAATA+TGG | - | chr7_1:69204628-69204647 | Msa1033900:CDS | 15.0% |
| !!! | ATTTTCATATTTTCTGTTTT+AGG | - | chr7_1:69204903-69204922 | Msa1033900:CDS | 15.0% |
| !! | ACTCCAAAAAAAAAAAAAAA+AGG | - | chr7_1:69204941-69204960 | Msa1033900:intron | 15.0% |
| !!! | TTTGATGATGAAATTAATAT+TGG | - | chr7_1:69205169-69205188 | Msa1033900:intron | 15.0% |
| !!! | GATAATGTTTAAAACTTTTA+AGG | + | chr7_1:69205408-69205427 | None:intergenic | 15.0% |
| !!! | GTAATATAACATTCTTTTAT+CGG | + | chr7_1:69205541-69205560 | None:intergenic | 15.0% |
| !! | AGACAAACATAATTAAATTA+AGG | + | chr7_1:69205641-69205660 | None:intergenic | 15.0% |
| !!! | AAGAGTGTAAGTTATATTAT+AGG | + | chr7_1:69204115-69204134 | None:intergenic | 20.0% |
| !! | AAATGATCATGTTTAGATAA+TGG | - | chr7_1:69204436-69204455 | Msa1033900:CDS | 20.0% |
| !! | GCTATAATGTCAAATAAAAT+CGG | - | chr7_1:69204477-69204496 | Msa1033900:CDS | 20.0% |
| !!! | GTCAATTTCTTTTAACATTT+TGG | - | chr7_1:69205007-69205026 | Msa1033900:intron | 20.0% |
| !!! | TTAAGGTACTTTAAATATCA+TGG | + | chr7_1:69205624-69205643 | None:intergenic | 20.0% |
| !!! | AAGAGTGTAAGTTATATTAT+AGG | + | chr7_1:69204115-69204134 | None:intergenic | 20.0% |
| !! | AAATGATCATGTTTAGATAA+TGG | - | chr7_1:69204436-69204455 | Msa1033900:CDS | 20.0% |
| !! | GCTATAATGTCAAATAAAAT+CGG | - | chr7_1:69204477-69204496 | Msa1033900:CDS | 20.0% |
| !!! | GTCAATTTCTTTTAACATTT+TGG | - | chr7_1:69205007-69205026 | Msa1033900:intron | 20.0% |
| !!! | TTAAGGTACTTTAAATATCA+TGG | + | chr7_1:69205624-69205643 | None:intergenic | 20.0% |
| !! | TCTTTCTCTATTTTCAACAA+TGG | - | chr7_1:69204165-69204184 | Msa1033900:three_prime_UTR | 25.0% |
| !!! | ATGTTTAGATAATGGAATTG+AGG | - | chr7_1:69204444-69204463 | Msa1033900:CDS | 25.0% |
| ! | TTAAAGAAAAAACATGCCTA+GGG | + | chr7_1:69204624-69204643 | None:intergenic | 25.0% |
| ! | TTTAAAGAAAAAACATGCCT+AGG | + | chr7_1:69204625-69204644 | None:intergenic | 25.0% |
| !! | CTTTACTTTGTTGTAACTAT+TGG | - | chr7_1:69204728-69204747 | Msa1033900:intron | 25.0% |
| !! | CAATTTTCTATGAATACACT+TGG | - | chr7_1:69204985-69205004 | Msa1033900:intron | 25.0% |
| ! | ACAATACTTGATTCATGAAA+TGG | - | chr7_1:69205121-69205140 | Msa1033900:intron | 25.0% |
| ! | AAATTAATATTGGTCCATGT+TGG | - | chr7_1:69205179-69205198 | Msa1033900:intron | 25.0% |
| ! | TTGTTACAAAAGAATAAGCA+TGG | + | chr7_1:69205282-69205301 | None:intergenic | 25.0% |
| !!! | TAAAACTTTTAAGGGCATTT+GGG | + | chr7_1:69205399-69205418 | None:intergenic | 25.0% |
| !!! | TTAAAACTTTTAAGGGCATT+TGG | + | chr7_1:69205400-69205419 | None:intergenic | 25.0% |
| !!! | TGATTGTACATTTTTTGTAG+TGG | + | chr7_1:69205588-69205607 | None:intergenic | 25.0% |
| ! | ATAAGACAAAAATTTCGCAT+TGG | - | chr7_1:69205691-69205710 | Msa1033900:five_prime_UTR | 25.0% |
| !! | TCTTTCTCTATTTTCAACAA+TGG | - | chr7_1:69204165-69204184 | Msa1033900:three_prime_UTR | 25.0% |
| !!! | ATGTTTAGATAATGGAATTG+AGG | - | chr7_1:69204444-69204463 | Msa1033900:CDS | 25.0% |
| ! | TTAAAGAAAAAACATGCCTA+GGG | + | chr7_1:69204624-69204643 | None:intergenic | 25.0% |
| ! | TTTAAAGAAAAAACATGCCT+AGG | + | chr7_1:69204625-69204644 | None:intergenic | 25.0% |
| !! | CTTTACTTTGTTGTAACTAT+TGG | - | chr7_1:69204728-69204747 | Msa1033900:intron | 25.0% |
| !! | CAATTTTCTATGAATACACT+TGG | - | chr7_1:69204985-69205004 | Msa1033900:intron | 25.0% |
| ! | ACAATACTTGATTCATGAAA+TGG | - | chr7_1:69205121-69205140 | Msa1033900:intron | 25.0% |
| ! | AAATTAATATTGGTCCATGT+TGG | - | chr7_1:69205179-69205198 | Msa1033900:intron | 25.0% |
| ! | TTGTTACAAAAGAATAAGCA+TGG | + | chr7_1:69205282-69205301 | None:intergenic | 25.0% |
| !!! | TAAAACTTTTAAGGGCATTT+GGG | + | chr7_1:69205399-69205418 | None:intergenic | 25.0% |
| !!! | TTAAAACTTTTAAGGGCATT+TGG | + | chr7_1:69205400-69205419 | None:intergenic | 25.0% |
| !!! | TGATTGTACATTTTTTGTAG+TGG | + | chr7_1:69205588-69205607 | None:intergenic | 25.0% |
| ! | ATAAGACAAAAATTTCGCAT+TGG | - | chr7_1:69205691-69205710 | Msa1033900:five_prime_UTR | 25.0% |
| !!! | TGTGACTGTTTTTGTTTTGT+TGG | - | chr7_1:69204003-69204022 | Msa1033900:three_prime_UTR | 30.0% |
| !!! | GTGACTGTTTTTGTTTTGTT+GGG | - | chr7_1:69204004-69204023 | Msa1033900:three_prime_UTR | 30.0% |
| ! | TGTCTTTTATAGCTGAAATG+TGG | + | chr7_1:69204079-69204098 | None:intergenic | 30.0% |
| GAAAGAAGATATCACAAGTT+TGG | + | chr7_1:69204151-69204170 | None:intergenic | 30.0% | |
| AGAGAACTATAAGACTTACA+TGG | + | chr7_1:69204252-69204271 | None:intergenic | 30.0% | |
| ! | TTCCTTGCACTTCAATTTTT+CGG | - | chr7_1:69204341-69204360 | Msa1033900:CDS | 30.0% |
| !!! | CTAGTTGTTTTGATCATCAA+TGG | - | chr7_1:69204408-69204427 | Msa1033900:CDS | 30.0% |
| CACTATATGGAAACATTTCT+AGG | + | chr7_1:69204564-69204583 | None:intergenic | 30.0% | |
| AGTAGTCATCAAACACTATA+TGG | + | chr7_1:69204577-69204596 | None:intergenic | 30.0% | |
| GCAATCAATTATTCTTGTGA+TGG | + | chr7_1:69204654-69204673 | None:intergenic | 30.0% | |
| ! | CAATTGTACATGATGTTTTC+AGG | - | chr7_1:69204772-69204791 | Msa1033900:intron | 30.0% |
| ! | AAGTATTGTTTGTTACCTTG+TGG | + | chr7_1:69205110-69205129 | None:intergenic | 30.0% |
| CATTAAGTCAATAACCAACA+TGG | + | chr7_1:69205196-69205215 | None:intergenic | 30.0% | |
| ATGCATTAAATTGCAGAATG+TGG | - | chr7_1:69205213-69205232 | Msa1033900:intron | 30.0% | |
| !!! | TGTGACTGTTTTTGTTTTGT+TGG | - | chr7_1:69204003-69204022 | Msa1033900:three_prime_UTR | 30.0% |
| !!! | GTGACTGTTTTTGTTTTGTT+GGG | - | chr7_1:69204004-69204023 | Msa1033900:three_prime_UTR | 30.0% |
| ! | TGTCTTTTATAGCTGAAATG+TGG | + | chr7_1:69204079-69204098 | None:intergenic | 30.0% |
| GAAAGAAGATATCACAAGTT+TGG | + | chr7_1:69204151-69204170 | None:intergenic | 30.0% | |
| AGAGAACTATAAGACTTACA+TGG | + | chr7_1:69204252-69204271 | None:intergenic | 30.0% | |
| ! | TTCCTTGCACTTCAATTTTT+CGG | - | chr7_1:69204341-69204360 | Msa1033900:CDS | 30.0% |
| !!! | CTAGTTGTTTTGATCATCAA+TGG | - | chr7_1:69204408-69204427 | Msa1033900:CDS | 30.0% |
| CACTATATGGAAACATTTCT+AGG | + | chr7_1:69204564-69204583 | None:intergenic | 30.0% | |
| AGTAGTCATCAAACACTATA+TGG | + | chr7_1:69204577-69204596 | None:intergenic | 30.0% | |
| GCAATCAATTATTCTTGTGA+TGG | + | chr7_1:69204654-69204673 | None:intergenic | 30.0% | |
| ! | CAATTGTACATGATGTTTTC+AGG | - | chr7_1:69204772-69204791 | Msa1033900:intron | 30.0% |
| ! | AAGTATTGTTTGTTACCTTG+TGG | + | chr7_1:69205110-69205129 | None:intergenic | 30.0% |
| CATTAAGTCAATAACCAACA+TGG | + | chr7_1:69205196-69205215 | None:intergenic | 30.0% | |
| ATGCATTAAATTGCAGAATG+TGG | - | chr7_1:69205213-69205232 | Msa1033900:intron | 30.0% | |
| TTTGTTGGGAAGACAAAGAT+TGG | - | chr7_1:69204018-69204037 | Msa1033900:three_prime_UTR | 35.0% | |
| AGTTATATTATAGGCAGACG+AGG | + | chr7_1:69204106-69204125 | None:intergenic | 35.0% | |
| !!! | AGACTTACATGGTTTTGTAG+AGG | + | chr7_1:69204241-69204260 | None:intergenic | 35.0% |
| ! | ATGACTACTCGAACATGTTT+TGG | - | chr7_1:69204588-69204607 | Msa1033900:intron | 35.0% |
| CAAGAAACAGAACTCACATT+GGG | + | chr7_1:69204869-69204888 | None:intergenic | 35.0% | |
| ! | CAATGTGAGTTCTGTTTCTT+GGG | - | chr7_1:69204868-69204887 | Msa1033900:CDS | 35.0% |
| GTGCTTGTACATATATTGAG+TGG | + | chr7_1:69205563-69205582 | None:intergenic | 35.0% | |
| GTCAAATTCCTCCTAGAAAT+AGG | - | chr7_1:69205721-69205740 | Msa1033900:five_prime_UTR | 35.0% | |
| TTTGTTGGGAAGACAAAGAT+TGG | - | chr7_1:69204018-69204037 | Msa1033900:three_prime_UTR | 35.0% | |
| AGTTATATTATAGGCAGACG+AGG | + | chr7_1:69204106-69204125 | None:intergenic | 35.0% | |
| !!! | AGACTTACATGGTTTTGTAG+AGG | + | chr7_1:69204241-69204260 | None:intergenic | 35.0% |
| ! | ATGACTACTCGAACATGTTT+TGG | - | chr7_1:69204588-69204607 | Msa1033900:intron | 35.0% |
| CAAGAAACAGAACTCACATT+GGG | + | chr7_1:69204869-69204888 | None:intergenic | 35.0% | |
| ! | CAATGTGAGTTCTGTTTCTT+GGG | - | chr7_1:69204868-69204887 | Msa1033900:CDS | 35.0% |
| GTGCTTGTACATATATTGAG+TGG | + | chr7_1:69205563-69205582 | None:intergenic | 35.0% | |
| GTCAAATTCCTCCTAGAAAT+AGG | - | chr7_1:69205721-69205740 | Msa1033900:five_prime_UTR | 35.0% | |
| GAAGAAGCAGCATTTGAACT+AGG | + | chr7_1:69204219-69204238 | None:intergenic | 40.0% | |
| CACCGAAAAATTGAAGTGCA+AGG | + | chr7_1:69204346-69204365 | None:intergenic | 40.0% | |
| CGGTAGTAGAGTCTAATGAA+AGG | - | chr7_1:69204497-69204516 | Msa1033900:intron | 40.0% | |
| !!! | ACTCGAACATGTTTTGGTCA+TGG | - | chr7_1:69204594-69204613 | Msa1033900:CDS | 40.0% |
| ! | TTTTGGTCATGGAATTCCCT+AGG | - | chr7_1:69204605-69204624 | Msa1033900:CDS | 40.0% |
| !!! | CTACTGTTTTTGCTAGGTTG+TGG | + | chr7_1:69204833-69204852 | None:intergenic | 40.0% |
| !!! | GTAGTGCTACTGTTTTTGCT+AGG | + | chr7_1:69204839-69204858 | None:intergenic | 40.0% |
| CCAAGAAACAGAACTCACAT+TGG | + | chr7_1:69204870-69204889 | None:intergenic | 40.0% | |
| ! | CCAATGTGAGTTCTGTTTCT+TGG | - | chr7_1:69204867-69204886 | Msa1033900:CDS | 40.0% |
| TGTTTCCCTGAATTTCAGCA+TGG | - | chr7_1:69205062-69205081 | Msa1033900:intron | 40.0% | |
| TGATGCCATGCTGAAATTCA+GGG | + | chr7_1:69205070-69205089 | None:intergenic | 40.0% | |
| TCTTCCAGTTGTTGTAGCAA+GGG | + | chr7_1:69205362-69205381 | None:intergenic | 40.0% | |
| ACAACAACTGGAAGACCAAA+AGG | - | chr7_1:69205367-69205386 | Msa1033900:intron | 40.0% | |
| CAACAACTGGAAGACCAAAA+GGG | - | chr7_1:69205368-69205387 | Msa1033900:intron | 40.0% | |
| AACAACTGGAAGACCAAAAG+GGG | - | chr7_1:69205369-69205388 | Msa1033900:intron | 40.0% | |
| AAAAGTCTAGCGCAAGCTAT+TGG | - | chr7_1:69205461-69205480 | Msa1033900:intron | 40.0% | |
| GAAGAAGCAGCATTTGAACT+AGG | + | chr7_1:69204219-69204238 | None:intergenic | 40.0% | |
| CACCGAAAAATTGAAGTGCA+AGG | + | chr7_1:69204346-69204365 | None:intergenic | 40.0% | |
| CGGTAGTAGAGTCTAATGAA+AGG | - | chr7_1:69204497-69204516 | Msa1033900:intron | 40.0% | |
| !!! | ACTCGAACATGTTTTGGTCA+TGG | - | chr7_1:69204594-69204613 | Msa1033900:CDS | 40.0% |
| ! | TTTTGGTCATGGAATTCCCT+AGG | - | chr7_1:69204605-69204624 | Msa1033900:CDS | 40.0% |
| !!! | CTACTGTTTTTGCTAGGTTG+TGG | + | chr7_1:69204833-69204852 | None:intergenic | 40.0% |
| !!! | GTAGTGCTACTGTTTTTGCT+AGG | + | chr7_1:69204839-69204858 | None:intergenic | 40.0% |
| CCAAGAAACAGAACTCACAT+TGG | + | chr7_1:69204870-69204889 | None:intergenic | 40.0% | |
| ! | CCAATGTGAGTTCTGTTTCT+TGG | - | chr7_1:69204867-69204886 | Msa1033900:CDS | 40.0% |
| TGTTTCCCTGAATTTCAGCA+TGG | - | chr7_1:69205062-69205081 | Msa1033900:intron | 40.0% | |
| TGATGCCATGCTGAAATTCA+GGG | + | chr7_1:69205070-69205089 | None:intergenic | 40.0% | |
| TCTTCCAGTTGTTGTAGCAA+GGG | + | chr7_1:69205362-69205381 | None:intergenic | 40.0% | |
| ACAACAACTGGAAGACCAAA+AGG | - | chr7_1:69205367-69205386 | Msa1033900:intron | 40.0% | |
| CAACAACTGGAAGACCAAAA+GGG | - | chr7_1:69205368-69205387 | Msa1033900:intron | 40.0% | |
| AACAACTGGAAGACCAAAAG+GGG | - | chr7_1:69205369-69205388 | Msa1033900:intron | 40.0% | |
| AAAAGTCTAGCGCAAGCTAT+TGG | - | chr7_1:69205461-69205480 | Msa1033900:intron | 40.0% | |
| ! | TCTTGATTCGTCGCATTGTG+AGG | + | chr7_1:69204529-69204548 | None:intergenic | 45.0% |
| AATTGTTGTGTCCACCGTTG+AGG | - | chr7_1:69204799-69204818 | Msa1033900:intron | 45.0% | |
| ! | TTTTTGCTAGGTTGTGGAGC+TGG | + | chr7_1:69204827-69204846 | None:intergenic | 45.0% |
| GTGATGCCATGCTGAAATTC+AGG | + | chr7_1:69205071-69205090 | None:intergenic | 45.0% | |
| TTTCAGCATGGCATCACTGA+AGG | - | chr7_1:69205074-69205093 | Msa1033900:intron | 45.0% | |
| GAGCATCTATTAGTGCATCG+TGG | + | chr7_1:69205240-69205259 | None:intergenic | 45.0% | |
| TTGTTGCCATAATAGCCAGG+AGG | + | chr7_1:69205330-69205349 | None:intergenic | 45.0% | |
| ! | TGCTTGTTGCCATAATAGCC+AGG | + | chr7_1:69205333-69205352 | None:intergenic | 45.0% |
| TGGCTATTATGGCAACAAGC+AGG | - | chr7_1:69205332-69205351 | Msa1033900:intron | 45.0% | |
| TTTGCCCTTGCTACAACAAC+TGG | - | chr7_1:69205355-69205374 | Msa1033900:intron | 45.0% | |
| GTCTTCCAGTTGTTGTAGCA+AGG | + | chr7_1:69205363-69205382 | None:intergenic | 45.0% | |
| !! | TAGCTTGCGCTAGACTTTTG+TGG | + | chr7_1:69205460-69205479 | None:intergenic | 45.0% |
| ! | TCTTGATTCGTCGCATTGTG+AGG | + | chr7_1:69204529-69204548 | None:intergenic | 45.0% |
| AATTGTTGTGTCCACCGTTG+AGG | - | chr7_1:69204799-69204818 | Msa1033900:intron | 45.0% | |
| ! | TTTTTGCTAGGTTGTGGAGC+TGG | + | chr7_1:69204827-69204846 | None:intergenic | 45.0% |
| GTGATGCCATGCTGAAATTC+AGG | + | chr7_1:69205071-69205090 | None:intergenic | 45.0% | |
| TTTCAGCATGGCATCACTGA+AGG | - | chr7_1:69205074-69205093 | Msa1033900:intron | 45.0% | |
| GAGCATCTATTAGTGCATCG+TGG | + | chr7_1:69205240-69205259 | None:intergenic | 45.0% | |
| TTGTTGCCATAATAGCCAGG+AGG | + | chr7_1:69205330-69205349 | None:intergenic | 45.0% | |
| ! | TGCTTGTTGCCATAATAGCC+AGG | + | chr7_1:69205333-69205352 | None:intergenic | 45.0% |
| TGGCTATTATGGCAACAAGC+AGG | - | chr7_1:69205332-69205351 | Msa1033900:intron | 45.0% | |
| TTTGCCCTTGCTACAACAAC+TGG | - | chr7_1:69205355-69205374 | Msa1033900:intron | 45.0% | |
| GTCTTCCAGTTGTTGTAGCA+AGG | + | chr7_1:69205363-69205382 | None:intergenic | 45.0% | |
| !! | TAGCTTGCGCTAGACTTTTG+TGG | + | chr7_1:69205460-69205479 | None:intergenic | 45.0% |
| GAAGGCAGTCTTCAACCACA+AGG | - | chr7_1:69205092-69205111 | Msa1033900:intron | 50.0% | |
| AAGTGTTTGTGTGTGCCTCC+TGG | - | chr7_1:69205312-69205331 | Msa1033900:intron | 50.0% | |
| TGTGTGCCTCCTGGCTATTA+TGG | - | chr7_1:69205321-69205340 | Msa1033900:intron | 50.0% | |
| AACTGGAAGACCAAAAGGGG+AGG | - | chr7_1:69205372-69205391 | Msa1033900:intron | 50.0% | |
| ! | CTTGCGCTAGACTTTTGTGG+TGG | + | chr7_1:69205457-69205476 | None:intergenic | 50.0% |
| GAAGGCAGTCTTCAACCACA+AGG | - | chr7_1:69205092-69205111 | Msa1033900:intron | 50.0% | |
| AAGTGTTTGTGTGTGCCTCC+TGG | - | chr7_1:69205312-69205331 | Msa1033900:intron | 50.0% | |
| TGTGTGCCTCCTGGCTATTA+TGG | - | chr7_1:69205321-69205340 | Msa1033900:intron | 50.0% | |
| AACTGGAAGACCAAAAGGGG+AGG | - | chr7_1:69205372-69205391 | Msa1033900:intron | 50.0% | |
| ! | CTTGCGCTAGACTTTTGTGG+TGG | + | chr7_1:69205457-69205476 | None:intergenic | 50.0% |
| TTGTGGAGCTGGAGCCTCAA+CGG | + | chr7_1:69204816-69204835 | None:intergenic | 55.0% | |
| ! | GCATTTGGGTCCTCCCCTTT+TGG | + | chr7_1:69205385-69205404 | None:intergenic | 55.0% |
| TTGTGGAGCTGGAGCCTCAA+CGG | + | chr7_1:69204816-69204835 | None:intergenic | 55.0% | |
| ! | GCATTTGGGTCCTCCCCTTT+TGG | + | chr7_1:69205385-69205404 | None:intergenic | 55.0% |
| TGGAGCTGGAGCCTCAACGG+TGG | + | chr7_1:69204813-69204832 | None:intergenic | 65.0% | |
| TGGAGCTGGAGCCTCAACGG+TGG | + | chr7_1:69204813-69204832 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 69203988 | 69205744 | 69203988 | ID=Msa1033900;Name=Msa1033900 |
| chr7_1 | mRNA | 69203988 | 69205744 | 69203988 | ID=Msa1033900-mRNA-1;Parent=Msa1033900;Name=Msa1033900-mRNA-1;_AED=0.05;_eAED=0.05;_QI=196|0.66|0.75|1|1|1|4|234|163 |
| chr7_1 | exon | 69203988 | 69204503 | 69203988 | ID=Msa1033900-mRNA-1:exon:16256;Parent=Msa1033900-mRNA-1 |
| chr7_1 | exon | 69204590 | 69204652 | 69204590 | ID=Msa1033900-mRNA-1:exon:16255;Parent=Msa1033900-mRNA-1 |
| chr7_1 | exon | 69204861 | 69204938 | 69204861 | ID=Msa1033900-mRNA-1:exon:16254;Parent=Msa1033900-mRNA-1 |
| chr7_1 | exon | 69205480 | 69205744 | 69205480 | ID=Msa1033900-mRNA-1:exon:16253;Parent=Msa1033900-mRNA-1 |
| chr7_1 | five_prime_UTR | 69205549 | 69205744 | 69205549 | ID=Msa1033900-mRNA-1:five_prime_utr;Parent=Msa1033900-mRNA-1 |
| chr7_1 | CDS | 69205480 | 69205548 | 69205480 | ID=Msa1033900-mRNA-1:cds;Parent=Msa1033900-mRNA-1 |
| chr7_1 | CDS | 69204861 | 69204938 | 69204861 | ID=Msa1033900-mRNA-1:cds;Parent=Msa1033900-mRNA-1 |
| chr7_1 | CDS | 69204590 | 69204652 | 69204590 | ID=Msa1033900-mRNA-1:cds;Parent=Msa1033900-mRNA-1 |
| chr7_1 | CDS | 69204222 | 69204503 | 69204222 | ID=Msa1033900-mRNA-1:cds;Parent=Msa1033900-mRNA-1 |
| chr7_1 | three_prime_UTR | 69203988 | 69204221 | 69203988 | ID=Msa1033900-mRNA-1:three_prime_utr;Parent=Msa1033900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
