Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073810 | XP_003625068.1 | 97.500 | 120 | 3 | 0 | 1 | 120 | 1 | 120 | 8.88e-80 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073810 | sp|P27057|GAST1_SOLLC | 77.465 | 71 | 16 | 0 | 50 | 120 | 42 | 112 | 1.55e-36 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073810 | Q2HRH3 | 97.500 | 120 | 3 | 0 | 1 | 120 | 1 | 120 | 4.24e-80 | 240 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1033900 | Msa1073810 | 0.891480 | 3.822254e-74 | -8.615850e-47 |
| Msa1073810 | Msa1114060 | 0.828673 | 7.890048e-55 | -8.615850e-47 |
| Msa1073810 | Msa1160020 | 0.916290 | 2.127424e-85 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073810 | MtrunA17_Chr7g0256821 | 97.500 | 120 | 3 | 0 | 1 | 120 | 1 | 120 | 8.17e-84 | 240 |
| Msa1073810 | MtrunA17_Chr3g0092361 | 50.833 | 120 | 42 | 1 | 1 | 120 | 1 | 103 | 7.31e-37 | 121 |
| Msa1073810 | MtrunA17_Chr6g0453241 | 47.500 | 120 | 50 | 2 | 1 | 120 | 1 | 107 | 1.59e-33 | 112 |
| Msa1073810 | MtrunA17_Chr7g0217311 | 72.727 | 66 | 18 | 0 | 55 | 120 | 44 | 109 | 5.10e-32 | 108 |
| Msa1073810 | MtrunA17_Chr5g0434631 | 73.134 | 67 | 18 | 0 | 54 | 120 | 30 | 96 | 6.26e-32 | 108 |
| Msa1073810 | MtrunA17_Chr5g0446671 | 78.333 | 60 | 13 | 0 | 61 | 120 | 6 | 65 | 5.21e-31 | 105 |
| Msa1073810 | MtrunA17_Chr3g0078781 | 76.667 | 60 | 14 | 0 | 61 | 120 | 6 | 65 | 1.13e-30 | 104 |
| Msa1073810 | MtrunA17_Chr5g0415001 | 68.657 | 67 | 21 | 0 | 54 | 120 | 26 | 92 | 3.12e-30 | 103 |
| Msa1073810 | MtrunA17_Chr5g0415091 | 72.131 | 61 | 17 | 0 | 60 | 120 | 28 | 88 | 1.05e-26 | 94.7 |
| Msa1073810 | MtrunA17_Chr5g0415051 | 66.667 | 60 | 20 | 0 | 61 | 120 | 12 | 71 | 2.75e-23 | 85.9 |
| Msa1073810 | MtrunA17_Chr5g0415111 | 65.000 | 60 | 21 | 0 | 61 | 120 | 24 | 83 | 1.38e-22 | 84.3 |
| Msa1073810 | MtrunA17_Chr3g0134511 | 50.847 | 59 | 29 | 0 | 62 | 120 | 27 | 85 | 5.12e-14 | 62.4 |
| Msa1073810 | MtrunA17_Chr3g0142671 | 34.188 | 117 | 62 | 3 | 5 | 120 | 1 | 103 | 7.38e-14 | 62.8 |
| Msa1073810 | MtrunA17_Chr1g0200531 | 48.333 | 60 | 31 | 0 | 61 | 120 | 41 | 100 | 2.13e-13 | 61.2 |
| Msa1073810 | MtrunA17_Chr1g0207611 | 45.763 | 59 | 32 | 0 | 62 | 120 | 32 | 90 | 2.87e-13 | 60.8 |
| Msa1073810 | MtrunA17_Chr1g0156601 | 41.772 | 79 | 45 | 1 | 43 | 120 | 23 | 101 | 4.08e-13 | 60.5 |
| Msa1073810 | MtrunA17_Chr8g0364311 | 28.926 | 121 | 76 | 3 | 1 | 120 | 1 | 112 | 1.04e-12 | 59.7 |
| Msa1073810 | MtrunA17_Chr4g0013021 | 62.791 | 43 | 16 | 0 | 54 | 96 | 26 | 68 | 2.30e-12 | 57.8 |
| Msa1073810 | MtrunA17_Chr1g0156621 | 39.241 | 79 | 47 | 1 | 43 | 120 | 22 | 100 | 1.40e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073810 | AT3G10185.1 | 65.600 | 125 | 35 | 3 | 1 | 120 | 1 | 122 | 8.76e-38 | 124 |
| Msa1073810 | AT1G74670.1 | 67.089 | 79 | 26 | 0 | 42 | 120 | 23 | 101 | 1.78e-34 | 115 |
| Msa1073810 | AT5G15230.1 | 44.828 | 116 | 44 | 1 | 5 | 120 | 11 | 106 | 6.48e-31 | 106 |
| Msa1073810 | AT5G15230.2 | 58.537 | 82 | 34 | 0 | 39 | 120 | 2 | 83 | 3.07e-29 | 101 |
| Msa1073810 | AT2G30810.1 | 51.282 | 117 | 44 | 3 | 5 | 120 | 2 | 106 | 2.04e-25 | 92.4 |
| Msa1073810 | AT3G02885.1 | 71.212 | 66 | 19 | 0 | 55 | 120 | 32 | 97 | 3.56e-22 | 84.0 |
| Msa1073810 | AT2G39540.1 | 47.692 | 65 | 34 | 0 | 56 | 120 | 23 | 87 | 6.90e-16 | 67.8 |
| Msa1073810 | AT1G10588.1 | 48.485 | 66 | 33 | 1 | 56 | 120 | 25 | 90 | 4.22e-15 | 65.9 |
| Msa1073810 | AT1G10588.2 | 48.485 | 66 | 33 | 1 | 56 | 120 | 24 | 89 | 9.67e-15 | 64.7 |
| Msa1073810 | AT4G09600.1 | 46.377 | 69 | 36 | 1 | 52 | 120 | 32 | 99 | 4.25e-14 | 63.5 |
| Msa1073810 | AT5G59845.1 | 51.667 | 60 | 28 | 1 | 62 | 120 | 30 | 89 | 7.64e-14 | 62.4 |
| Msa1073810 | AT2G14900.1 | 35.052 | 97 | 49 | 1 | 24 | 120 | 26 | 108 | 1.19e-13 | 62.4 |
| Msa1073810 | AT1G22690.1 | 52.542 | 59 | 28 | 0 | 62 | 120 | 61 | 119 | 2.79e-13 | 62.0 |
| Msa1073810 | AT1G22690.2 | 52.542 | 59 | 28 | 0 | 62 | 120 | 61 | 119 | 2.79e-13 | 62.0 |
| Msa1073810 | AT1G22690.3 | 52.542 | 59 | 28 | 0 | 62 | 120 | 61 | 119 | 2.79e-13 | 62.0 |
| Msa1073810 | AT5G14920.1 | 49.180 | 61 | 30 | 1 | 61 | 120 | 215 | 275 | 9.59e-11 | 57.8 |
Find 32 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTTGGGTCCTCCCCTTT+TGG | 0.258816 | 7_2:+71449635 | None:intergenic |
| AAGAGTGTAAGTTATATTAT+AGG | 0.287207 | 7_2:+71450906 | None:intergenic |
| TGCCTTGTGTGCCTATTTCT+AGG | 0.287616 | 7_2:+71449285 | None:intergenic |
| GTCAAATTCCTCCTAGAAAT+AGG | 0.323437 | 7_2:-71449296 | Msa1073810:three_prime_UTR |
| AGACAAACATAATTAAATTA+AGG | 0.347789 | 7_2:+71449379 | None:intergenic |
| GAAAGAAGATATCACAAGTT+TGG | 0.358833 | 7_2:+71450870 | None:intergenic |
| TTAAGGTACTTTAAATATCA+TGG | 0.365347 | 7_2:+71449396 | None:intergenic |
| TGTGTGCCTCCTGGCTATTA+TGG | 0.366912 | 7_2:-71449696 | Msa1073810:CDS |
| TTTGCCCTTGCTACAACAAC+TGG | 0.381953 | 7_2:-71449662 | Msa1073810:CDS |
| AAAAGTCTAGCGCAAGCTAT+TGG | 0.421829 | 7_2:-71449556 | Msa1073810:three_prime_UTR |
| GTCTTCCAGTTGTTGTAGCA+AGG | 0.436792 | 7_2:+71449657 | None:intergenic |
| AAGTGTTTGTGTGTGCCTCC+TGG | 0.437793 | 7_2:-71449705 | Msa1073810:CDS |
| TTTGTTGGGAAGACAAAGAT+TGG | 0.441929 | 7_2:-71451000 | Msa1073810:five_prime_UTR |
| ACAACAACTGGAAGACCAAA+AGG | 0.460886 | 7_2:-71449650 | Msa1073810:CDS |
| CAACAACTGGAAGACCAAAA+GGG | 0.528864 | 7_2:-71449649 | Msa1073810:CDS |
| TGCTTGTTGCCATAATAGCC+AGG | 0.534265 | 7_2:+71449687 | None:intergenic |
| GAAGAAGCAGCATTTGAACT+AGG | 0.542882 | 7_2:+71450802 | None:intergenic |
| TCTTCCAGTTGTTGTAGCAA+GGG | 0.549133 | 7_2:+71449658 | None:intergenic |
| TGGCTATTATGGCAACAAGC+AGG | 0.551960 | 7_2:-71449685 | Msa1073810:CDS |
| TTGTGGAGCTGGAGCCTCAA+CGG | 0.577216 | 7_2:+71450205 | None:intergenic |
| TTTCAGCATGGCATCACTGA+AGG | 0.581824 | 7_2:-71449943 | Msa1073810:intron |
| TTGTTACAAAAGAATAAGCA+TGG | 0.618630 | 7_2:+71449738 | None:intergenic |
| AACAACTGGAAGACCAAAAG+GGG | 0.622992 | 7_2:-71449648 | Msa1073810:CDS |
| CTTGTGTGCCTATTTCTAGG+AGG | 0.628466 | 7_2:+71449288 | None:intergenic |
| AATTGTTGTGTCCACCGTTG+AGG | 0.638248 | 7_2:-71450219 | Msa1073810:CDS |
| AACTGGAAGACCAAAAGGGG+AGG | 0.643524 | 7_2:-71449645 | Msa1073810:CDS |
| GTGCTTGTACATATATTGAG+TGG | 0.644083 | 7_2:+71449457 | None:intergenic |
| AGTTATATTATAGGCAGACG+AGG | 0.662886 | 7_2:+71450915 | None:intergenic |
| TGGAGCTGGAGCCTCAACGG+TGG | 0.663602 | 7_2:+71450208 | None:intergenic |
| GAGCATCTATTAGTGCATCG+TGG | 0.712242 | 7_2:+71449780 | None:intergenic |
| GAAGGCAGTCTTCAACCACA+AGG | 0.744634 | 7_2:-71449925 | Msa1073810:intron |
| TTGTTGCCATAATAGCCAGG+AGG | 0.777087 | 7_2:+71449690 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACCTTTTTTTTTTTTTTTT+TGG | + | chr7_2:71450254-71450273 | None:intergenic | 10.0% |
| !!! | ATAATGTTTAAAACTTTTAA+GGG | + | chr7_2:71450715-71450734 | None:intergenic | 10.0% |
| !!! | AATTTTTGTCTTATATTTTA+AGG | + | chr7_2:71450993-71451012 | None:intergenic | 10.0% |
| !!! | AACCTTTTTTTTTTTTTTTT+TGG | + | chr7_2:71450254-71450273 | None:intergenic | 10.0% |
| !!! | ATAATGTTTAAAACTTTTAA+GGG | + | chr7_2:71450715-71450734 | None:intergenic | 10.0% |
| !!! | AATTTTTGTCTTATATTTTA+AGG | + | chr7_2:71450993-71451012 | None:intergenic | 10.0% |
| !!! | CATGTTTTTTCTTTAAAATA+TGG | - | chr7_2:71449935-71449954 | Msa1073810:CDS | 15.0% |
| !!! | ATTTTCATATTTTCTGTTTT+AGG | - | chr7_2:71450210-71450229 | Msa1073810:CDS | 15.0% |
| !! | CTCCAAAAAAAAAAAAAAAA+AGG | - | chr7_2:71450249-71450268 | Msa1073810:intron | 15.0% |
| !!! | TTTGATGATGAAATTAATAT+TGG | - | chr7_2:71450477-71450496 | Msa1073810:intron | 15.0% |
| !!! | GATAATGTTTAAAACTTTTA+AGG | + | chr7_2:71450716-71450735 | None:intergenic | 15.0% |
| !!! | GTAATATAACATTCTTTTAT+CGG | + | chr7_2:71450849-71450868 | None:intergenic | 15.0% |
| !! | AGACAAACATAATTAAATTA+AGG | + | chr7_2:71450949-71450968 | None:intergenic | 15.0% |
| !!! | CATGTTTTTTCTTTAAAATA+TGG | - | chr7_2:71449935-71449954 | Msa1073810:CDS | 15.0% |
| !!! | ATTTTCATATTTTCTGTTTT+AGG | - | chr7_2:71450210-71450229 | Msa1073810:CDS | 15.0% |
| !! | CTCCAAAAAAAAAAAAAAAA+AGG | - | chr7_2:71450249-71450268 | Msa1073810:intron | 15.0% |
| !!! | TTTGATGATGAAATTAATAT+TGG | - | chr7_2:71450477-71450496 | Msa1073810:intron | 15.0% |
| !!! | GATAATGTTTAAAACTTTTA+AGG | + | chr7_2:71450716-71450735 | None:intergenic | 15.0% |
| !!! | GTAATATAACATTCTTTTAT+CGG | + | chr7_2:71450849-71450868 | None:intergenic | 15.0% |
| !! | AGACAAACATAATTAAATTA+AGG | + | chr7_2:71450949-71450968 | None:intergenic | 15.0% |
| !!! | AAGAGTGTAAGTTATATTAT+AGG | + | chr7_2:71449422-71449441 | None:intergenic | 20.0% |
| !! | AAATGATCATGTTTAGATAA+TGG | - | chr7_2:71449743-71449762 | Msa1073810:CDS | 20.0% |
| !! | GCTATAATGTCAAATAAAAT+CGG | - | chr7_2:71449784-71449803 | Msa1073810:CDS | 20.0% |
| !!! | GTCAATTTCTTTTAACATTT+TGG | - | chr7_2:71450315-71450334 | Msa1073810:intron | 20.0% |
| !!! | TTAAGGTACTTTAAATATCA+TGG | + | chr7_2:71450932-71450951 | None:intergenic | 20.0% |
| !!! | AAGAGTGTAAGTTATATTAT+AGG | + | chr7_2:71449422-71449441 | None:intergenic | 20.0% |
| !! | AAATGATCATGTTTAGATAA+TGG | - | chr7_2:71449743-71449762 | Msa1073810:CDS | 20.0% |
| !! | GCTATAATGTCAAATAAAAT+CGG | - | chr7_2:71449784-71449803 | Msa1073810:CDS | 20.0% |
| !!! | GTCAATTTCTTTTAACATTT+TGG | - | chr7_2:71450315-71450334 | Msa1073810:intron | 20.0% |
| !!! | TTAAGGTACTTTAAATATCA+TGG | + | chr7_2:71450932-71450951 | None:intergenic | 20.0% |
| !! | TCTTTCTCTATTTTCAACAA+TGG | - | chr7_2:71449472-71449491 | Msa1073810:three_prime_UTR | 25.0% |
| !!! | ATGTTTAGATAATGGAATTG+AGG | - | chr7_2:71449751-71449770 | Msa1073810:CDS | 25.0% |
| ! | TTAAAGAAAAAACATGCCTA+GGG | + | chr7_2:71449931-71449950 | None:intergenic | 25.0% |
| ! | TTTAAAGAAAAAACATGCCT+AGG | + | chr7_2:71449932-71449951 | None:intergenic | 25.0% |
| !! | CTTTACTTTGTTGTAACTAT+TGG | - | chr7_2:71450035-71450054 | Msa1073810:intron | 25.0% |
| !! | CAATTTTCTATGAATACACT+TGG | - | chr7_2:71450293-71450312 | Msa1073810:intron | 25.0% |
| ! | ACAATACTTGATTCATGAAA+TGG | - | chr7_2:71450429-71450448 | Msa1073810:intron | 25.0% |
| ! | AAATTAATATTGGTCCATGT+TGG | - | chr7_2:71450487-71450506 | Msa1073810:intron | 25.0% |
| ! | TTGTTACAAAAGAATAAGCA+TGG | + | chr7_2:71450590-71450609 | None:intergenic | 25.0% |
| !!! | TAAAACTTTTAAGGGCATTT+GGG | + | chr7_2:71450707-71450726 | None:intergenic | 25.0% |
| !!! | TTAAAACTTTTAAGGGCATT+TGG | + | chr7_2:71450708-71450727 | None:intergenic | 25.0% |
| !!! | TGATTGTACATTTTTTGTAG+TGG | + | chr7_2:71450896-71450915 | None:intergenic | 25.0% |
| ! | ATAAGACAAAAATTTCGCAT+TGG | - | chr7_2:71450999-71451018 | Msa1073810:five_prime_UTR | 25.0% |
| !! | TCTTTCTCTATTTTCAACAA+TGG | - | chr7_2:71449472-71449491 | Msa1073810:three_prime_UTR | 25.0% |
| !!! | ATGTTTAGATAATGGAATTG+AGG | - | chr7_2:71449751-71449770 | Msa1073810:CDS | 25.0% |
| ! | TTAAAGAAAAAACATGCCTA+GGG | + | chr7_2:71449931-71449950 | None:intergenic | 25.0% |
| ! | TTTAAAGAAAAAACATGCCT+AGG | + | chr7_2:71449932-71449951 | None:intergenic | 25.0% |
| !! | CTTTACTTTGTTGTAACTAT+TGG | - | chr7_2:71450035-71450054 | Msa1073810:intron | 25.0% |
| !! | CAATTTTCTATGAATACACT+TGG | - | chr7_2:71450293-71450312 | Msa1073810:intron | 25.0% |
| ! | ACAATACTTGATTCATGAAA+TGG | - | chr7_2:71450429-71450448 | Msa1073810:intron | 25.0% |
| ! | AAATTAATATTGGTCCATGT+TGG | - | chr7_2:71450487-71450506 | Msa1073810:intron | 25.0% |
| ! | TTGTTACAAAAGAATAAGCA+TGG | + | chr7_2:71450590-71450609 | None:intergenic | 25.0% |
| !!! | TAAAACTTTTAAGGGCATTT+GGG | + | chr7_2:71450707-71450726 | None:intergenic | 25.0% |
| !!! | TTAAAACTTTTAAGGGCATT+TGG | + | chr7_2:71450708-71450727 | None:intergenic | 25.0% |
| !!! | TGATTGTACATTTTTTGTAG+TGG | + | chr7_2:71450896-71450915 | None:intergenic | 25.0% |
| ! | ATAAGACAAAAATTTCGCAT+TGG | - | chr7_2:71450999-71451018 | Msa1073810:five_prime_UTR | 25.0% |
| !!! | TGTGACTGTTTTTGTTTTGT+TGG | - | chr7_2:71449310-71449329 | Msa1073810:three_prime_UTR | 30.0% |
| !!! | GTGACTGTTTTTGTTTTGTT+GGG | - | chr7_2:71449311-71449330 | Msa1073810:three_prime_UTR | 30.0% |
| ! | TGTCTTTTATAGCTGAAATG+TGG | + | chr7_2:71449386-71449405 | None:intergenic | 30.0% |
| GAAAGAAGATATCACAAGTT+TGG | + | chr7_2:71449458-71449477 | None:intergenic | 30.0% | |
| AGAGAACTATAAGACTTACA+TGG | + | chr7_2:71449559-71449578 | None:intergenic | 30.0% | |
| ! | TTCCTTGCACTTCAATTTTT+CGG | - | chr7_2:71449648-71449667 | Msa1073810:CDS | 30.0% |
| !!! | CTAGTTGTTTTGATCATCAA+TGG | - | chr7_2:71449715-71449734 | Msa1073810:CDS | 30.0% |
| CACTATATGGAAACATTTCT+AGG | + | chr7_2:71449871-71449890 | None:intergenic | 30.0% | |
| AGTAGTCATCAAACACTATA+TGG | + | chr7_2:71449884-71449903 | None:intergenic | 30.0% | |
| GCAATCAATTATTCTTGTGA+TGG | + | chr7_2:71449961-71449980 | None:intergenic | 30.0% | |
| ! | CAATTGTACATGATGTTTTC+AGG | - | chr7_2:71450079-71450098 | Msa1073810:intron | 30.0% |
| ! | AAGTATTGTTTGTTACCTTG+TGG | + | chr7_2:71450418-71450437 | None:intergenic | 30.0% |
| CATTAAGTCAATAACCAACA+TGG | + | chr7_2:71450504-71450523 | None:intergenic | 30.0% | |
| ATGCATTAAATTGCAGAATG+TGG | - | chr7_2:71450521-71450540 | Msa1073810:intron | 30.0% | |
| !!! | TGTGACTGTTTTTGTTTTGT+TGG | - | chr7_2:71449310-71449329 | Msa1073810:three_prime_UTR | 30.0% |
| !!! | GTGACTGTTTTTGTTTTGTT+GGG | - | chr7_2:71449311-71449330 | Msa1073810:three_prime_UTR | 30.0% |
| ! | TGTCTTTTATAGCTGAAATG+TGG | + | chr7_2:71449386-71449405 | None:intergenic | 30.0% |
| GAAAGAAGATATCACAAGTT+TGG | + | chr7_2:71449458-71449477 | None:intergenic | 30.0% | |
| AGAGAACTATAAGACTTACA+TGG | + | chr7_2:71449559-71449578 | None:intergenic | 30.0% | |
| ! | TTCCTTGCACTTCAATTTTT+CGG | - | chr7_2:71449648-71449667 | Msa1073810:CDS | 30.0% |
| !!! | CTAGTTGTTTTGATCATCAA+TGG | - | chr7_2:71449715-71449734 | Msa1073810:CDS | 30.0% |
| CACTATATGGAAACATTTCT+AGG | + | chr7_2:71449871-71449890 | None:intergenic | 30.0% | |
| AGTAGTCATCAAACACTATA+TGG | + | chr7_2:71449884-71449903 | None:intergenic | 30.0% | |
| GCAATCAATTATTCTTGTGA+TGG | + | chr7_2:71449961-71449980 | None:intergenic | 30.0% | |
| ! | CAATTGTACATGATGTTTTC+AGG | - | chr7_2:71450079-71450098 | Msa1073810:intron | 30.0% |
| ! | AAGTATTGTTTGTTACCTTG+TGG | + | chr7_2:71450418-71450437 | None:intergenic | 30.0% |
| CATTAAGTCAATAACCAACA+TGG | + | chr7_2:71450504-71450523 | None:intergenic | 30.0% | |
| ATGCATTAAATTGCAGAATG+TGG | - | chr7_2:71450521-71450540 | Msa1073810:intron | 30.0% | |
| TTTGTTGGGAAGACAAAGAT+TGG | - | chr7_2:71449325-71449344 | Msa1073810:three_prime_UTR | 35.0% | |
| AGTTATATTATAGGCAGACG+AGG | + | chr7_2:71449413-71449432 | None:intergenic | 35.0% | |
| !!! | AGACTTACATGGTTTTGTAG+AGG | + | chr7_2:71449548-71449567 | None:intergenic | 35.0% |
| ! | ATGACTACTCGAACATGTTT+TGG | - | chr7_2:71449895-71449914 | Msa1073810:intron | 35.0% |
| CAAGAAACAGAACTCACATT+GGG | + | chr7_2:71450176-71450195 | None:intergenic | 35.0% | |
| ! | CAATGTGAGTTCTGTTTCTT+GGG | - | chr7_2:71450175-71450194 | Msa1073810:CDS | 35.0% |
| GTGCTTGTACATATATTGAG+TGG | + | chr7_2:71450871-71450890 | None:intergenic | 35.0% | |
| GTCAAATTCCTCCTAGAAAT+AGG | - | chr7_2:71451029-71451048 | Msa1073810:five_prime_UTR | 35.0% | |
| TTTGTTGGGAAGACAAAGAT+TGG | - | chr7_2:71449325-71449344 | Msa1073810:three_prime_UTR | 35.0% | |
| AGTTATATTATAGGCAGACG+AGG | + | chr7_2:71449413-71449432 | None:intergenic | 35.0% | |
| !!! | AGACTTACATGGTTTTGTAG+AGG | + | chr7_2:71449548-71449567 | None:intergenic | 35.0% |
| ! | ATGACTACTCGAACATGTTT+TGG | - | chr7_2:71449895-71449914 | Msa1073810:intron | 35.0% |
| CAAGAAACAGAACTCACATT+GGG | + | chr7_2:71450176-71450195 | None:intergenic | 35.0% | |
| ! | CAATGTGAGTTCTGTTTCTT+GGG | - | chr7_2:71450175-71450194 | Msa1073810:CDS | 35.0% |
| GTGCTTGTACATATATTGAG+TGG | + | chr7_2:71450871-71450890 | None:intergenic | 35.0% | |
| GTCAAATTCCTCCTAGAAAT+AGG | - | chr7_2:71451029-71451048 | Msa1073810:five_prime_UTR | 35.0% | |
| GAAGAAGCAGCATTTGAACT+AGG | + | chr7_2:71449526-71449545 | None:intergenic | 40.0% | |
| CACCGAAAAATTGAAGTGCA+AGG | + | chr7_2:71449653-71449672 | None:intergenic | 40.0% | |
| CGGTAGTAGAGTCTAATGAA+AGG | - | chr7_2:71449804-71449823 | Msa1073810:intron | 40.0% | |
| !!! | ACTCGAACATGTTTTGGTCA+TGG | - | chr7_2:71449901-71449920 | Msa1073810:intron | 40.0% |
| ! | TTTTGGTCATGGAATTCCCT+AGG | - | chr7_2:71449912-71449931 | Msa1073810:intron | 40.0% |
| !!! | CTACTGTTTTTGCTAGGTTG+TGG | + | chr7_2:71450140-71450159 | None:intergenic | 40.0% |
| !!! | GTAGTGCTACTGTTTTTGCT+AGG | + | chr7_2:71450146-71450165 | None:intergenic | 40.0% |
| CCAAGAAACAGAACTCACAT+TGG | + | chr7_2:71450177-71450196 | None:intergenic | 40.0% | |
| ! | CCAATGTGAGTTCTGTTTCT+TGG | - | chr7_2:71450174-71450193 | Msa1073810:CDS | 40.0% |
| TGTTTCCCTGAATTTCAGCA+TGG | - | chr7_2:71450370-71450389 | Msa1073810:intron | 40.0% | |
| TGATGCCATGCTGAAATTCA+GGG | + | chr7_2:71450378-71450397 | None:intergenic | 40.0% | |
| TCTTCCAGTTGTTGTAGCAA+GGG | + | chr7_2:71450670-71450689 | None:intergenic | 40.0% | |
| ACAACAACTGGAAGACCAAA+AGG | - | chr7_2:71450675-71450694 | Msa1073810:intron | 40.0% | |
| CAACAACTGGAAGACCAAAA+GGG | - | chr7_2:71450676-71450695 | Msa1073810:intron | 40.0% | |
| AACAACTGGAAGACCAAAAG+GGG | - | chr7_2:71450677-71450696 | Msa1073810:intron | 40.0% | |
| AAAAGTCTAGCGCAAGCTAT+TGG | - | chr7_2:71450769-71450788 | Msa1073810:intron | 40.0% | |
| GAAGAAGCAGCATTTGAACT+AGG | + | chr7_2:71449526-71449545 | None:intergenic | 40.0% | |
| CACCGAAAAATTGAAGTGCA+AGG | + | chr7_2:71449653-71449672 | None:intergenic | 40.0% | |
| CGGTAGTAGAGTCTAATGAA+AGG | - | chr7_2:71449804-71449823 | Msa1073810:intron | 40.0% | |
| !!! | ACTCGAACATGTTTTGGTCA+TGG | - | chr7_2:71449901-71449920 | Msa1073810:intron | 40.0% |
| ! | TTTTGGTCATGGAATTCCCT+AGG | - | chr7_2:71449912-71449931 | Msa1073810:intron | 40.0% |
| !!! | CTACTGTTTTTGCTAGGTTG+TGG | + | chr7_2:71450140-71450159 | None:intergenic | 40.0% |
| !!! | GTAGTGCTACTGTTTTTGCT+AGG | + | chr7_2:71450146-71450165 | None:intergenic | 40.0% |
| CCAAGAAACAGAACTCACAT+TGG | + | chr7_2:71450177-71450196 | None:intergenic | 40.0% | |
| ! | CCAATGTGAGTTCTGTTTCT+TGG | - | chr7_2:71450174-71450193 | Msa1073810:CDS | 40.0% |
| TGTTTCCCTGAATTTCAGCA+TGG | - | chr7_2:71450370-71450389 | Msa1073810:intron | 40.0% | |
| TGATGCCATGCTGAAATTCA+GGG | + | chr7_2:71450378-71450397 | None:intergenic | 40.0% | |
| TCTTCCAGTTGTTGTAGCAA+GGG | + | chr7_2:71450670-71450689 | None:intergenic | 40.0% | |
| ACAACAACTGGAAGACCAAA+AGG | - | chr7_2:71450675-71450694 | Msa1073810:intron | 40.0% | |
| CAACAACTGGAAGACCAAAA+GGG | - | chr7_2:71450676-71450695 | Msa1073810:intron | 40.0% | |
| AACAACTGGAAGACCAAAAG+GGG | - | chr7_2:71450677-71450696 | Msa1073810:intron | 40.0% | |
| AAAAGTCTAGCGCAAGCTAT+TGG | - | chr7_2:71450769-71450788 | Msa1073810:intron | 40.0% | |
| ! | TCTTGATTCGTCGCATTGTG+AGG | + | chr7_2:71449836-71449855 | None:intergenic | 45.0% |
| AATTGTTGTGTCCACCGTTG+AGG | - | chr7_2:71450106-71450125 | Msa1073810:intron | 45.0% | |
| ! | TTTTTGCTAGGTTGTGGAGC+TGG | + | chr7_2:71450134-71450153 | None:intergenic | 45.0% |
| GTGATGCCATGCTGAAATTC+AGG | + | chr7_2:71450379-71450398 | None:intergenic | 45.0% | |
| TTTCAGCATGGCATCACTGA+AGG | - | chr7_2:71450382-71450401 | Msa1073810:intron | 45.0% | |
| GAGCATCTATTAGTGCATCG+TGG | + | chr7_2:71450548-71450567 | None:intergenic | 45.0% | |
| TTGTTGCCATAATAGCCAGG+AGG | + | chr7_2:71450638-71450657 | None:intergenic | 45.0% | |
| ! | TGCTTGTTGCCATAATAGCC+AGG | + | chr7_2:71450641-71450660 | None:intergenic | 45.0% |
| TGGCTATTATGGCAACAAGC+AGG | - | chr7_2:71450640-71450659 | Msa1073810:intron | 45.0% | |
| TTTGCCCTTGCTACAACAAC+TGG | - | chr7_2:71450663-71450682 | Msa1073810:intron | 45.0% | |
| GTCTTCCAGTTGTTGTAGCA+AGG | + | chr7_2:71450671-71450690 | None:intergenic | 45.0% | |
| ! | CTTGCGCTAGACTTTTGTAG+TGG | + | chr7_2:71450765-71450784 | None:intergenic | 45.0% |
| ! | TCTTGATTCGTCGCATTGTG+AGG | + | chr7_2:71449836-71449855 | None:intergenic | 45.0% |
| AATTGTTGTGTCCACCGTTG+AGG | - | chr7_2:71450106-71450125 | Msa1073810:intron | 45.0% | |
| ! | TTTTTGCTAGGTTGTGGAGC+TGG | + | chr7_2:71450134-71450153 | None:intergenic | 45.0% |
| GTGATGCCATGCTGAAATTC+AGG | + | chr7_2:71450379-71450398 | None:intergenic | 45.0% | |
| TTTCAGCATGGCATCACTGA+AGG | - | chr7_2:71450382-71450401 | Msa1073810:intron | 45.0% | |
| GAGCATCTATTAGTGCATCG+TGG | + | chr7_2:71450548-71450567 | None:intergenic | 45.0% | |
| TTGTTGCCATAATAGCCAGG+AGG | + | chr7_2:71450638-71450657 | None:intergenic | 45.0% | |
| ! | TGCTTGTTGCCATAATAGCC+AGG | + | chr7_2:71450641-71450660 | None:intergenic | 45.0% |
| TGGCTATTATGGCAACAAGC+AGG | - | chr7_2:71450640-71450659 | Msa1073810:intron | 45.0% | |
| TTTGCCCTTGCTACAACAAC+TGG | - | chr7_2:71450663-71450682 | Msa1073810:intron | 45.0% | |
| GTCTTCCAGTTGTTGTAGCA+AGG | + | chr7_2:71450671-71450690 | None:intergenic | 45.0% | |
| ! | CTTGCGCTAGACTTTTGTAG+TGG | + | chr7_2:71450765-71450784 | None:intergenic | 45.0% |
| GAAGGCAGTCTTCAACCACA+AGG | - | chr7_2:71450400-71450419 | Msa1073810:intron | 50.0% | |
| AAGTGTTTGTGTGTGCCTCC+TGG | - | chr7_2:71450620-71450639 | Msa1073810:intron | 50.0% | |
| TGTGTGCCTCCTGGCTATTA+TGG | - | chr7_2:71450629-71450648 | Msa1073810:intron | 50.0% | |
| AACTGGAAGACCAAAAGGGG+AGG | - | chr7_2:71450680-71450699 | Msa1073810:intron | 50.0% | |
| GAAGGCAGTCTTCAACCACA+AGG | - | chr7_2:71450400-71450419 | Msa1073810:intron | 50.0% | |
| AAGTGTTTGTGTGTGCCTCC+TGG | - | chr7_2:71450620-71450639 | Msa1073810:intron | 50.0% | |
| TGTGTGCCTCCTGGCTATTA+TGG | - | chr7_2:71450629-71450648 | Msa1073810:intron | 50.0% | |
| AACTGGAAGACCAAAAGGGG+AGG | - | chr7_2:71450680-71450699 | Msa1073810:intron | 50.0% | |
| TTGTGGAGCTGGAGCCTCAA+CGG | + | chr7_2:71450123-71450142 | None:intergenic | 55.0% | |
| ! | GCATTTGGGTCCTCCCCTTT+TGG | + | chr7_2:71450693-71450712 | None:intergenic | 55.0% |
| TTGTGGAGCTGGAGCCTCAA+CGG | + | chr7_2:71450123-71450142 | None:intergenic | 55.0% | |
| ! | GCATTTGGGTCCTCCCCTTT+TGG | + | chr7_2:71450693-71450712 | None:intergenic | 55.0% |
| TGGAGCTGGAGCCTCAACGG+TGG | + | chr7_2:71450120-71450139 | None:intergenic | 65.0% | |
| TGGAGCTGGAGCCTCAACGG+TGG | + | chr7_2:71450120-71450139 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 71449295 | 71451052 | 71449295 | ID=Msa1073810;Name=Msa1073810 |
| chr7_2 | mRNA | 71449295 | 71451052 | 71449295 | ID=Msa1073810-mRNA-1;Parent=Msa1073810;Name=Msa1073810-mRNA-1;_AED=0.04;_eAED=0.04;_QI=196|1|1|1|0.66|0.75|4|334|120 |
| chr7_2 | exon | 71449295 | 71449810 | 71449295 | ID=Msa1073810-mRNA-1:exon:16189;Parent=Msa1073810-mRNA-1 |
| chr7_2 | exon | 71449926 | 71449959 | 71449926 | ID=Msa1073810-mRNA-1:exon:16188;Parent=Msa1073810-mRNA-1 |
| chr7_2 | exon | 71450169 | 71450246 | 71450169 | ID=Msa1073810-mRNA-1:exon:16187;Parent=Msa1073810-mRNA-1 |
| chr7_2 | exon | 71450788 | 71451052 | 71450788 | ID=Msa1073810-mRNA-1:exon:16186;Parent=Msa1073810-mRNA-1 |
| chr7_2 | five_prime_UTR | 71450857 | 71451052 | 71450857 | ID=Msa1073810-mRNA-1:five_prime_utr;Parent=Msa1073810-mRNA-1 |
| chr7_2 | CDS | 71450788 | 71450856 | 71450788 | ID=Msa1073810-mRNA-1:cds;Parent=Msa1073810-mRNA-1 |
| chr7_2 | CDS | 71450169 | 71450246 | 71450169 | ID=Msa1073810-mRNA-1:cds;Parent=Msa1073810-mRNA-1 |
| chr7_2 | CDS | 71449926 | 71449959 | 71449926 | ID=Msa1073810-mRNA-1:cds;Parent=Msa1073810-mRNA-1 |
| chr7_2 | CDS | 71449629 | 71449810 | 71449629 | ID=Msa1073810-mRNA-1:cds;Parent=Msa1073810-mRNA-1 |
| chr7_2 | three_prime_UTR | 71449295 | 71449628 | 71449295 | ID=Msa1073810-mRNA-1:three_prime_utr;Parent=Msa1073810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
