Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160020 | XP_003625068.1 | 96.117 | 103 | 4 | 0 | 1 | 103 | 1 | 103 | 1.64e-65 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160020 | sp|P27057|GAST1_SOLLC | 57.971 | 69 | 27 | 1 | 50 | 116 | 42 | 110 | 1.70e-22 | 89.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160020 | Q2HRH3 | 96.117 | 103 | 4 | 0 | 1 | 103 | 1 | 103 | 7.84e-66 | 205 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1033900 | Msa1160020 | 0.830670 | 2.576751e-55 | -8.615850e-47 |
| Msa1073810 | Msa1160020 | 0.916290 | 2.127424e-85 | -8.615850e-47 |
| Msa1114060 | Msa1160020 | 0.904757 | 8.785228e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160020 | MtrunA17_Chr7g0256821 | 96.117 | 103 | 4 | 0 | 1 | 103 | 1 | 103 | 1.51e-69 | 205 |
| Msa1160020 | MtrunA17_Chr3g0092361 | 38.983 | 118 | 53 | 2 | 1 | 116 | 1 | 101 | 6.10e-22 | 84.3 |
| Msa1160020 | MtrunA17_Chr5g0434631 | 56.923 | 65 | 26 | 1 | 54 | 116 | 30 | 94 | 6.32e-20 | 79.0 |
| Msa1160020 | MtrunA17_Chr6g0453241 | 38.136 | 118 | 58 | 3 | 1 | 116 | 1 | 105 | 1.16e-19 | 78.6 |
| Msa1160020 | MtrunA17_Chr7g0217311 | 41.053 | 95 | 54 | 1 | 24 | 116 | 13 | 107 | 1.10e-18 | 76.3 |
| Msa1160020 | MtrunA17_Chr5g0415001 | 67.347 | 49 | 16 | 0 | 54 | 102 | 26 | 74 | 6.75e-18 | 73.6 |
| Msa1160020 | MtrunA17_Chr5g0446671 | 56.897 | 58 | 23 | 1 | 61 | 116 | 6 | 63 | 2.76e-17 | 71.2 |
| Msa1160020 | MtrunA17_Chr3g0078781 | 55.172 | 58 | 24 | 1 | 61 | 116 | 6 | 63 | 6.15e-17 | 70.5 |
| Msa1160020 | MtrunA17_Chr5g0415091 | 69.048 | 42 | 13 | 0 | 61 | 102 | 29 | 70 | 1.29e-13 | 62.4 |
| Msa1160020 | MtrunA17_Chr4g0013021 | 62.791 | 43 | 16 | 0 | 54 | 96 | 26 | 68 | 4.98e-12 | 57.8 |
| Msa1160020 | MtrunA17_Chr5g0415111 | 61.905 | 42 | 16 | 0 | 61 | 102 | 24 | 65 | 1.05e-11 | 57.4 |
| Msa1160020 | MtrunA17_Chr5g0415051 | 61.905 | 42 | 16 | 0 | 61 | 102 | 12 | 53 | 1.85e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160020 | AT3G10185.1 | 59.259 | 108 | 36 | 3 | 1 | 103 | 1 | 105 | 5.34e-22 | 85.5 |
| Msa1160020 | AT1G74670.1 | 54.054 | 74 | 32 | 1 | 45 | 116 | 26 | 99 | 3.92e-21 | 82.4 |
| Msa1160020 | AT5G15230.1 | 33.929 | 112 | 52 | 2 | 7 | 116 | 13 | 104 | 3.35e-17 | 72.4 |
| Msa1160020 | AT5G15230.2 | 53.125 | 64 | 28 | 1 | 55 | 116 | 18 | 81 | 2.21e-16 | 69.7 |
| Msa1160020 | AT2G30810.1 | 42.609 | 115 | 51 | 4 | 5 | 116 | 2 | 104 | 1.07e-12 | 60.8 |
Find 25 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATATACGTATTCTCTCTA+TGG | 0.242239 | 7_4:+49759674 | Msa1160020:CDS |
| AAGAGTGTAAGTTATATTAT+AGG | 0.287207 | 7_4:-49758005 | None:intergenic |
| TGCCTTGTGTGCCTATTTCT+AGG | 0.287616 | 7_4:-49759612 | None:intergenic |
| GTCAAATTCCTCCTAGAAAT+AGG | 0.323437 | 7_4:+49759601 | Msa1160020:CDS |
| GAAAGAAGATATCACAAGTT+TGG | 0.358833 | 7_4:-49758041 | None:intergenic |
| TGTGTGCCTCCTGGCTATTA+TGG | 0.366912 | 7_4:+49759198 | Msa1160020:CDS |
| AAGTGTTTGTGTGTGCCTCC+TGG | 0.437793 | 7_4:+49759189 | Msa1160020:CDS |
| TTTGTTGGGAAGACAAAGAT+TGG | 0.441929 | 7_4:+49757911 | Msa1160020:five_prime_UTR |
| CATATACGTATTCTCTCTAT+GGG | 0.503766 | 7_4:+49759675 | Msa1160020:CDS |
| TGCTTGTTGCCATAATAGCC+AGG | 0.534265 | 7_4:-49759207 | None:intergenic |
| GAGAGAATACGTATATGCCT+TGG | 0.542153 | 7_4:-49759669 | None:intergenic |
| GAAGAAGCAGCATTTGAACT+AGG | 0.542882 | 7_4:-49758109 | None:intergenic |
| TGGCTATTATGGCAACAAGC+AGG | 0.551960 | 7_4:+49759209 | Msa1160020:CDS |
| CTCCTAGAAATAGGCACACA+AGG | 0.572832 | 7_4:+49759610 | Msa1160020:CDS |
| TTGTGGAGCTGGAGCCTCAA+CGG | 0.577216 | 7_4:-49758737 | None:intergenic |
| TTTCAGCATGGCATCACTGA+AGG | 0.581824 | 7_4:+49758940 | Msa1160020:intron |
| TTGTTACAAAAGAATAAGCA+TGG | 0.618630 | 7_4:-49759156 | None:intergenic |
| CTTGTGTGCCTATTTCTAGG+AGG | 0.628466 | 7_4:-49759609 | None:intergenic |
| ATGCAAATAGTACATGTCCA+AGG | 0.634929 | 7_4:+49759652 | Msa1160020:CDS |
| GATTGTTGTGTCCACCGTTG+AGG | 0.641899 | 7_4:+49758723 | Msa1160020:CDS |
| AGTTATATTATAGGCAGACG+AGG | 0.662886 | 7_4:-49757996 | None:intergenic |
| TGGAGCTGGAGCCTCAACGG+TGG | 0.663602 | 7_4:-49758734 | None:intergenic |
| GAGCATCTATTAGTGCATCG+TGG | 0.712242 | 7_4:-49759114 | None:intergenic |
| GAAGGCAGTCTTCAACCACA+AGG | 0.744634 | 7_4:+49758958 | Msa1160020:CDS |
| TTGTTGCCATAATAGCCAGG+AGG | 0.777087 | 7_4:-49759204 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATGTTTAAAACTTTTAA+GGG | - | chr7_4:49759284-49759303 | None:intergenic | 10.0% |
| !!! | AATTTTTGTCTTATATTTTA+AGG | - | chr7_4:49759565-49759584 | None:intergenic | 10.0% |
| !!! | ATAATGTTTAAAACTTTTAA+GGG | - | chr7_4:49759284-49759303 | None:intergenic | 10.0% |
| !!! | AATTTTTGTCTTATATTTTA+AGG | - | chr7_4:49759565-49759584 | None:intergenic | 10.0% |
| !!! | CATGTTTTTTCTTTAAAATA+TGG | + | chr7_4:49758521-49758540 | Msa1160020:intron | 15.0% |
| !!! | ATTTTCATATTTTCTGTTTT+AGG | + | chr7_4:49758826-49758845 | Msa1160020:intron | 15.0% |
| !! | AATACTTGATTAATGATTAA+TGG | + | chr7_4:49758989-49759008 | Msa1160020:intron | 15.0% |
| !!! | TTTGATGATGAAATTAATAT+TGG | + | chr7_4:49759046-49759065 | Msa1160020:intron | 15.0% |
| !!! | GATAATGTTTAAAACTTTTA+AGG | - | chr7_4:49759285-49759304 | None:intergenic | 15.0% |
| !!! | GTAATATAACATTCTTTTAT+CGG | - | chr7_4:49759421-49759440 | None:intergenic | 15.0% |
| !! | AGACAAACATAATTAAATTA+AGG | - | chr7_4:49759521-49759540 | None:intergenic | 15.0% |
| !!! | CATGTTTTTTCTTTAAAATA+TGG | + | chr7_4:49758521-49758540 | Msa1160020:intron | 15.0% |
| !!! | ATTTTCATATTTTCTGTTTT+AGG | + | chr7_4:49758826-49758845 | Msa1160020:intron | 15.0% |
| !! | AATACTTGATTAATGATTAA+TGG | + | chr7_4:49758989-49759008 | Msa1160020:intron | 15.0% |
| !!! | TTTGATGATGAAATTAATAT+TGG | + | chr7_4:49759046-49759065 | Msa1160020:intron | 15.0% |
| !!! | GATAATGTTTAAAACTTTTA+AGG | - | chr7_4:49759285-49759304 | None:intergenic | 15.0% |
| !!! | GTAATATAACATTCTTTTAT+CGG | - | chr7_4:49759421-49759440 | None:intergenic | 15.0% |
| !! | AGACAAACATAATTAAATTA+AGG | - | chr7_4:49759521-49759540 | None:intergenic | 15.0% |
| !!! | AAGAGTGTAAGTTATATTAT+AGG | - | chr7_4:49758008-49758027 | None:intergenic | 20.0% |
| !! | AAATGATCATGTTTAGATAA+TGG | + | chr7_4:49758329-49758348 | Msa1160020:intron | 20.0% |
| !! | GCTATAATGTCAAATAAAAT+CGG | + | chr7_4:49758370-49758389 | Msa1160020:intron | 20.0% |
| !!! | CTTTAATTTGTTGTAACTAT+TGG | + | chr7_4:49758623-49758642 | Msa1160020:intron | 20.0% |
| !! | TGATGAGTTACATAAATATT+TGG | - | chr7_4:49758677-49758696 | None:intergenic | 20.0% |
| !! | ATAATAATAATGATGCTTTC+AGG | + | chr7_4:49758696-49758715 | Msa1160020:intron | 20.0% |
| !! | AAGCAAGAAATTAACATTAA+AGG | - | chr7_4:49758909-49758928 | None:intergenic | 20.0% |
| !!! | TTAAGGTACTTTAAATATCA+TGG | - | chr7_4:49759504-49759523 | None:intergenic | 20.0% |
| !!! | AAGAGTGTAAGTTATATTAT+AGG | - | chr7_4:49758008-49758027 | None:intergenic | 20.0% |
| !! | AAATGATCATGTTTAGATAA+TGG | + | chr7_4:49758329-49758348 | Msa1160020:intron | 20.0% |
| !! | GCTATAATGTCAAATAAAAT+CGG | + | chr7_4:49758370-49758389 | Msa1160020:intron | 20.0% |
| !!! | CTTTAATTTGTTGTAACTAT+TGG | + | chr7_4:49758623-49758642 | Msa1160020:intron | 20.0% |
| !! | TGATGAGTTACATAAATATT+TGG | - | chr7_4:49758677-49758696 | None:intergenic | 20.0% |
| !! | ATAATAATAATGATGCTTTC+AGG | + | chr7_4:49758696-49758715 | Msa1160020:intron | 20.0% |
| !! | AAGCAAGAAATTAACATTAA+AGG | - | chr7_4:49758909-49758928 | None:intergenic | 20.0% |
| !!! | TTAAGGTACTTTAAATATCA+TGG | - | chr7_4:49759504-49759523 | None:intergenic | 20.0% |
| !!! | TGTGATTGTTTTTGTTTTGT+TGG | + | chr7_4:49757896-49757915 | Msa1160020:five_prime_UTR | 25.0% |
| !!! | GTGATTGTTTTTGTTTTGTT+GGG | + | chr7_4:49757897-49757916 | Msa1160020:five_prime_UTR | 25.0% |
| !! | TCTTTCTCTATTTTCAACAA+TGG | + | chr7_4:49758058-49758077 | Msa1160020:exon | 25.0% |
| !!! | ATGTTTAGATAATGGAATTG+AGG | + | chr7_4:49758337-49758356 | Msa1160020:intron | 25.0% |
| ! | TTAAAGAAAAAACATGCCTA+GGG | - | chr7_4:49758517-49758536 | None:intergenic | 25.0% |
| ! | TTTAAAGAAAAAACATGCCT+AGG | - | chr7_4:49758518-49758537 | None:intergenic | 25.0% |
| ! | CAAAAATGTTAAAACACAGA+AGG | - | chr7_4:49758876-49758895 | None:intergenic | 25.0% |
| ! | AAATTAATATTGGTCCATGT+TGG | + | chr7_4:49759056-49759075 | Msa1160020:intron | 25.0% |
| ! | TTGTTACAAAAGAATAAGCA+TGG | - | chr7_4:49759159-49759178 | None:intergenic | 25.0% |
| !!! | TAAAACTTTTAAGGGCATTT+GGG | - | chr7_4:49759276-49759295 | None:intergenic | 25.0% |
| !!! | TTAAAACTTTTAAGGGCATT+TGG | - | chr7_4:49759277-49759296 | None:intergenic | 25.0% |
| !!! | TGATTGTACATTTTTTGTAG+TGG | - | chr7_4:49759468-49759487 | None:intergenic | 25.0% |
| ! | ATAAGACAAAAATTTCGCAT+TGG | + | chr7_4:49759571-49759590 | Msa1160020:intron | 25.0% |
| !!! | TGTGATTGTTTTTGTTTTGT+TGG | + | chr7_4:49757896-49757915 | Msa1160020:five_prime_UTR | 25.0% |
| !!! | GTGATTGTTTTTGTTTTGTT+GGG | + | chr7_4:49757897-49757916 | Msa1160020:five_prime_UTR | 25.0% |
| !! | TCTTTCTCTATTTTCAACAA+TGG | + | chr7_4:49758058-49758077 | Msa1160020:exon | 25.0% |
| !!! | ATGTTTAGATAATGGAATTG+AGG | + | chr7_4:49758337-49758356 | Msa1160020:intron | 25.0% |
| ! | TTAAAGAAAAAACATGCCTA+GGG | - | chr7_4:49758517-49758536 | None:intergenic | 25.0% |
| ! | TTTAAAGAAAAAACATGCCT+AGG | - | chr7_4:49758518-49758537 | None:intergenic | 25.0% |
| ! | CAAAAATGTTAAAACACAGA+AGG | - | chr7_4:49758876-49758895 | None:intergenic | 25.0% |
| ! | AAATTAATATTGGTCCATGT+TGG | + | chr7_4:49759056-49759075 | Msa1160020:intron | 25.0% |
| ! | TTGTTACAAAAGAATAAGCA+TGG | - | chr7_4:49759159-49759178 | None:intergenic | 25.0% |
| !!! | TAAAACTTTTAAGGGCATTT+GGG | - | chr7_4:49759276-49759295 | None:intergenic | 25.0% |
| !!! | TTAAAACTTTTAAGGGCATT+TGG | - | chr7_4:49759277-49759296 | None:intergenic | 25.0% |
| !!! | TGATTGTACATTTTTTGTAG+TGG | - | chr7_4:49759468-49759487 | None:intergenic | 25.0% |
| ! | ATAAGACAAAAATTTCGCAT+TGG | + | chr7_4:49759571-49759590 | Msa1160020:intron | 25.0% |
| ! | TGTCTTTTATAGCTGAAATG+TGG | - | chr7_4:49757972-49757991 | None:intergenic | 30.0% |
| GAAAGAAGATATCACAAGTT+TGG | - | chr7_4:49758044-49758063 | None:intergenic | 30.0% | |
| AGAGAACTATAAGACTTACA+TGG | - | chr7_4:49758145-49758164 | None:intergenic | 30.0% | |
| ! | TTCCTTGCACTTCAATTTTT+CGG | + | chr7_4:49758234-49758253 | Msa1160020:intron | 30.0% |
| !!! | CTAGTTGTTTTGATCATCAA+TGG | + | chr7_4:49758301-49758320 | Msa1160020:intron | 30.0% |
| CACTATATGGAAACATTTCT+AGG | - | chr7_4:49758457-49758476 | None:intergenic | 30.0% | |
| AGTAGTCATCAAACACTATA+TGG | - | chr7_4:49758470-49758489 | None:intergenic | 30.0% | |
| GCAATCAATTATTCTTGTGA+TGG | - | chr7_4:49758547-49758566 | None:intergenic | 30.0% | |
| CCAAAAAAAGAACTCACATT+GGG | - | chr7_4:49758793-49758812 | None:intergenic | 30.0% | |
| ACCAAAAAAAGAACTCACAT+TGG | - | chr7_4:49758794-49758813 | None:intergenic | 30.0% | |
| ! | AAGTATTGTTTGTTACCTTG+TGG | - | chr7_4:49758976-49758995 | None:intergenic | 30.0% |
| CATTAAGTCAATAACCAACA+TGG | - | chr7_4:49759073-49759092 | None:intergenic | 30.0% | |
| ATGCATTAAATTGCAGAATG+TGG | + | chr7_4:49759090-49759109 | Msa1160020:intron | 30.0% | |
| CATATACGTATTCTCTCTAT+GGG | + | chr7_4:49759675-49759694 | Msa1160020:CDS | 30.0% | |
| ! | TGTCTTTTATAGCTGAAATG+TGG | - | chr7_4:49757972-49757991 | None:intergenic | 30.0% |
| GAAAGAAGATATCACAAGTT+TGG | - | chr7_4:49758044-49758063 | None:intergenic | 30.0% | |
| AGAGAACTATAAGACTTACA+TGG | - | chr7_4:49758145-49758164 | None:intergenic | 30.0% | |
| ! | TTCCTTGCACTTCAATTTTT+CGG | + | chr7_4:49758234-49758253 | Msa1160020:intron | 30.0% |
| !!! | CTAGTTGTTTTGATCATCAA+TGG | + | chr7_4:49758301-49758320 | Msa1160020:intron | 30.0% |
| CACTATATGGAAACATTTCT+AGG | - | chr7_4:49758457-49758476 | None:intergenic | 30.0% | |
| AGTAGTCATCAAACACTATA+TGG | - | chr7_4:49758470-49758489 | None:intergenic | 30.0% | |
| GCAATCAATTATTCTTGTGA+TGG | - | chr7_4:49758547-49758566 | None:intergenic | 30.0% | |
| CCAAAAAAAGAACTCACATT+GGG | - | chr7_4:49758793-49758812 | None:intergenic | 30.0% | |
| ACCAAAAAAAGAACTCACAT+TGG | - | chr7_4:49758794-49758813 | None:intergenic | 30.0% | |
| ! | AAGTATTGTTTGTTACCTTG+TGG | - | chr7_4:49758976-49758995 | None:intergenic | 30.0% |
| CATTAAGTCAATAACCAACA+TGG | - | chr7_4:49759073-49759092 | None:intergenic | 30.0% | |
| ATGCATTAAATTGCAGAATG+TGG | + | chr7_4:49759090-49759109 | Msa1160020:intron | 30.0% | |
| CATATACGTATTCTCTCTAT+GGG | + | chr7_4:49759675-49759694 | Msa1160020:CDS | 30.0% | |
| TTTGTTGGGAAGACAAAGAT+TGG | + | chr7_4:49757911-49757930 | Msa1160020:five_prime_UTR | 35.0% | |
| AGTTATATTATAGGCAGACG+AGG | - | chr7_4:49757999-49758018 | None:intergenic | 35.0% | |
| !!! | AGACTTACATGGTTTTGTAG+AGG | - | chr7_4:49758134-49758153 | None:intergenic | 35.0% |
| CGGTAGTAGAGTCTAATTAA+AGG | + | chr7_4:49758390-49758409 | Msa1160020:intron | 35.0% | |
| ! | ATGACTACTCGAACATGTTT+TGG | + | chr7_4:49758481-49758500 | Msa1160020:intron | 35.0% |
| !!! | CCCAATGTGAGTTCTTTTTT+TGG | + | chr7_4:49758790-49758809 | Msa1160020:intron | 35.0% |
| GTGCTTGTACATATATTGAG+TGG | - | chr7_4:49759443-49759462 | None:intergenic | 35.0% | |
| GTCAAATTCCTCCTAGAAAT+AGG | + | chr7_4:49759601-49759620 | Msa1160020:CDS | 35.0% | |
| ATGCAAATAGTACATGTCCA+AGG | + | chr7_4:49759652-49759671 | Msa1160020:CDS | 35.0% | |
| GCATATACGTATTCTCTCTA+TGG | + | chr7_4:49759674-49759693 | Msa1160020:CDS | 35.0% | |
| TTTGTTGGGAAGACAAAGAT+TGG | + | chr7_4:49757911-49757930 | Msa1160020:five_prime_UTR | 35.0% | |
| AGTTATATTATAGGCAGACG+AGG | - | chr7_4:49757999-49758018 | None:intergenic | 35.0% | |
| !!! | AGACTTACATGGTTTTGTAG+AGG | - | chr7_4:49758134-49758153 | None:intergenic | 35.0% |
| CGGTAGTAGAGTCTAATTAA+AGG | + | chr7_4:49758390-49758409 | Msa1160020:intron | 35.0% | |
| ! | ATGACTACTCGAACATGTTT+TGG | + | chr7_4:49758481-49758500 | Msa1160020:intron | 35.0% |
| !!! | CCCAATGTGAGTTCTTTTTT+TGG | + | chr7_4:49758790-49758809 | Msa1160020:intron | 35.0% |
| GTGCTTGTACATATATTGAG+TGG | - | chr7_4:49759443-49759462 | None:intergenic | 35.0% | |
| GTCAAATTCCTCCTAGAAAT+AGG | + | chr7_4:49759601-49759620 | Msa1160020:CDS | 35.0% | |
| ATGCAAATAGTACATGTCCA+AGG | + | chr7_4:49759652-49759671 | Msa1160020:CDS | 35.0% | |
| GCATATACGTATTCTCTCTA+TGG | + | chr7_4:49759674-49759693 | Msa1160020:CDS | 35.0% | |
| GAAGAAGCAGCATTTGAACT+AGG | - | chr7_4:49758112-49758131 | None:intergenic | 40.0% | |
| CACCGAAAAATTGAAGTGCA+AGG | - | chr7_4:49758239-49758258 | None:intergenic | 40.0% | |
| !!! | ACTCGAACATGTTTTGGTCA+TGG | + | chr7_4:49758487-49758506 | Msa1160020:intron | 40.0% |
| ! | TTTTGGTCATGGAATTCCCT+AGG | + | chr7_4:49758498-49758517 | Msa1160020:intron | 40.0% |
| !!! | CCATTGTTTTTGCTAGGTTG+TGG | - | chr7_4:49758757-49758776 | None:intergenic | 40.0% |
| CCACAACCTAGCAAAAACAA+TGG | + | chr7_4:49758754-49758773 | Msa1160020:CDS | 40.0% | |
| TGTTTCCCTGAATTTCAGCA+TGG | + | chr7_4:49758928-49758947 | Msa1160020:intron | 40.0% | |
| TGATGCCATGCTGAAATTCA+GGG | - | chr7_4:49758936-49758955 | None:intergenic | 40.0% | |
| TCTTCCAGTTGTTGTAGCAA+GGG | - | chr7_4:49759239-49759258 | None:intergenic | 40.0% | |
| ACAACAACTGGAAGACCAAA+AGG | + | chr7_4:49759244-49759263 | Msa1160020:intron | 40.0% | |
| CAACAACTGGAAGACCAAAA+GGG | + | chr7_4:49759245-49759264 | Msa1160020:intron | 40.0% | |
| AACAACTGGAAGACCAAAAG+GGG | + | chr7_4:49759246-49759265 | Msa1160020:intron | 40.0% | |
| AAAAGTCTAGCGCAAGCTAT+TGG | + | chr7_4:49759341-49759360 | Msa1160020:intron | 40.0% | |
| GAGAGAATACGTATATGCCT+TGG | - | chr7_4:49759672-49759691 | None:intergenic | 40.0% | |
| GAAGAAGCAGCATTTGAACT+AGG | - | chr7_4:49758112-49758131 | None:intergenic | 40.0% | |
| CACCGAAAAATTGAAGTGCA+AGG | - | chr7_4:49758239-49758258 | None:intergenic | 40.0% | |
| !!! | ACTCGAACATGTTTTGGTCA+TGG | + | chr7_4:49758487-49758506 | Msa1160020:intron | 40.0% |
| ! | TTTTGGTCATGGAATTCCCT+AGG | + | chr7_4:49758498-49758517 | Msa1160020:intron | 40.0% |
| !!! | CCATTGTTTTTGCTAGGTTG+TGG | - | chr7_4:49758757-49758776 | None:intergenic | 40.0% |
| CCACAACCTAGCAAAAACAA+TGG | + | chr7_4:49758754-49758773 | Msa1160020:CDS | 40.0% | |
| TGTTTCCCTGAATTTCAGCA+TGG | + | chr7_4:49758928-49758947 | Msa1160020:intron | 40.0% | |
| TGATGCCATGCTGAAATTCA+GGG | - | chr7_4:49758936-49758955 | None:intergenic | 40.0% | |
| TCTTCCAGTTGTTGTAGCAA+GGG | - | chr7_4:49759239-49759258 | None:intergenic | 40.0% | |
| ACAACAACTGGAAGACCAAA+AGG | + | chr7_4:49759244-49759263 | Msa1160020:intron | 40.0% | |
| CAACAACTGGAAGACCAAAA+GGG | + | chr7_4:49759245-49759264 | Msa1160020:intron | 40.0% | |
| AACAACTGGAAGACCAAAAG+GGG | + | chr7_4:49759246-49759265 | Msa1160020:intron | 40.0% | |
| AAAAGTCTAGCGCAAGCTAT+TGG | + | chr7_4:49759341-49759360 | Msa1160020:intron | 40.0% | |
| GAGAGAATACGTATATGCCT+TGG | - | chr7_4:49759672-49759691 | None:intergenic | 40.0% | |
| ! | TCTTGATTCGTCGCATTGTG+AGG | - | chr7_4:49758422-49758441 | None:intergenic | 45.0% |
| ! | TTTTTGCTAGGTTGTGGAGC+TGG | - | chr7_4:49758751-49758770 | None:intergenic | 45.0% |
| !!! | GCAGTGCCATTGTTTTTGCT+AGG | - | chr7_4:49758763-49758782 | None:intergenic | 45.0% |
| GTGATGCCATGCTGAAATTC+AGG | - | chr7_4:49758937-49758956 | None:intergenic | 45.0% | |
| TTTCAGCATGGCATCACTGA+AGG | + | chr7_4:49758940-49758959 | Msa1160020:intron | 45.0% | |
| GAGCATCTATTAGTGCATCG+TGG | - | chr7_4:49759117-49759136 | None:intergenic | 45.0% | |
| TTGTTGCCATAATAGCCAGG+AGG | - | chr7_4:49759207-49759226 | None:intergenic | 45.0% | |
| ! | TGCTTGTTGCCATAATAGCC+AGG | - | chr7_4:49759210-49759229 | None:intergenic | 45.0% |
| TGGCTATTATGGCAACAAGC+AGG | + | chr7_4:49759209-49759228 | Msa1160020:CDS | 45.0% | |
| TTTGCCCTTGCTACAACAAC+TGG | + | chr7_4:49759232-49759251 | Msa1160020:intron | 45.0% | |
| GTCTTCCAGTTGTTGTAGCA+AGG | - | chr7_4:49759240-49759259 | None:intergenic | 45.0% | |
| ! | CTTGCGCTAGACTTTTGTAG+TGG | - | chr7_4:49759337-49759356 | None:intergenic | 45.0% |
| !! | CTTGTGTGCCTATTTCTAGG+AGG | - | chr7_4:49759612-49759631 | None:intergenic | 45.0% |
| CTCCTAGAAATAGGCACACA+AGG | + | chr7_4:49759610-49759629 | Msa1160020:CDS | 45.0% | |
| ! | TGCCTTGTGTGCCTATTTCT+AGG | - | chr7_4:49759615-49759634 | None:intergenic | 45.0% |
| ! | TCTTGATTCGTCGCATTGTG+AGG | - | chr7_4:49758422-49758441 | None:intergenic | 45.0% |
| ! | TTTTTGCTAGGTTGTGGAGC+TGG | - | chr7_4:49758751-49758770 | None:intergenic | 45.0% |
| !!! | GCAGTGCCATTGTTTTTGCT+AGG | - | chr7_4:49758763-49758782 | None:intergenic | 45.0% |
| GTGATGCCATGCTGAAATTC+AGG | - | chr7_4:49758937-49758956 | None:intergenic | 45.0% | |
| TTTCAGCATGGCATCACTGA+AGG | + | chr7_4:49758940-49758959 | Msa1160020:intron | 45.0% | |
| GAGCATCTATTAGTGCATCG+TGG | - | chr7_4:49759117-49759136 | None:intergenic | 45.0% | |
| TTGTTGCCATAATAGCCAGG+AGG | - | chr7_4:49759207-49759226 | None:intergenic | 45.0% | |
| ! | TGCTTGTTGCCATAATAGCC+AGG | - | chr7_4:49759210-49759229 | None:intergenic | 45.0% |
| TGGCTATTATGGCAACAAGC+AGG | + | chr7_4:49759209-49759228 | Msa1160020:CDS | 45.0% | |
| TTTGCCCTTGCTACAACAAC+TGG | + | chr7_4:49759232-49759251 | Msa1160020:intron | 45.0% | |
| GTCTTCCAGTTGTTGTAGCA+AGG | - | chr7_4:49759240-49759259 | None:intergenic | 45.0% | |
| ! | CTTGCGCTAGACTTTTGTAG+TGG | - | chr7_4:49759337-49759356 | None:intergenic | 45.0% |
| !! | CTTGTGTGCCTATTTCTAGG+AGG | - | chr7_4:49759612-49759631 | None:intergenic | 45.0% |
| CTCCTAGAAATAGGCACACA+AGG | + | chr7_4:49759610-49759629 | Msa1160020:CDS | 45.0% | |
| ! | TGCCTTGTGTGCCTATTTCT+AGG | - | chr7_4:49759615-49759634 | None:intergenic | 45.0% |
| GATTGTTGTGTCCACCGTTG+AGG | + | chr7_4:49758723-49758742 | Msa1160020:CDS | 50.0% | |
| GAAGGCAGTCTTCAACCACA+AGG | + | chr7_4:49758958-49758977 | Msa1160020:CDS | 50.0% | |
| AAGTGTTTGTGTGTGCCTCC+TGG | + | chr7_4:49759189-49759208 | Msa1160020:CDS | 50.0% | |
| TGTGTGCCTCCTGGCTATTA+TGG | + | chr7_4:49759198-49759217 | Msa1160020:CDS | 50.0% | |
| AACTGGAAGACCAAAAGGGG+AGG | + | chr7_4:49759249-49759268 | Msa1160020:intron | 50.0% | |
| GATTGTTGTGTCCACCGTTG+AGG | + | chr7_4:49758723-49758742 | Msa1160020:CDS | 50.0% | |
| GAAGGCAGTCTTCAACCACA+AGG | + | chr7_4:49758958-49758977 | Msa1160020:CDS | 50.0% | |
| AAGTGTTTGTGTGTGCCTCC+TGG | + | chr7_4:49759189-49759208 | Msa1160020:CDS | 50.0% | |
| TGTGTGCCTCCTGGCTATTA+TGG | + | chr7_4:49759198-49759217 | Msa1160020:CDS | 50.0% | |
| AACTGGAAGACCAAAAGGGG+AGG | + | chr7_4:49759249-49759268 | Msa1160020:intron | 50.0% | |
| TTGTGGAGCTGGAGCCTCAA+CGG | - | chr7_4:49758740-49758759 | None:intergenic | 55.0% | |
| ! | GCATTTGGGTCCTCCCCTTT+TGG | - | chr7_4:49759262-49759281 | None:intergenic | 55.0% |
| TTGTGGAGCTGGAGCCTCAA+CGG | - | chr7_4:49758740-49758759 | None:intergenic | 55.0% | |
| ! | GCATTTGGGTCCTCCCCTTT+TGG | - | chr7_4:49759262-49759281 | None:intergenic | 55.0% |
| TGGAGCTGGAGCCTCAACGG+TGG | - | chr7_4:49758737-49758756 | None:intergenic | 65.0% | |
| TGGAGCTGGAGCCTCAACGG+TGG | - | chr7_4:49758737-49758756 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 49757881 | 49759716 | 49757881 | ID=Msa1160020;Name=Msa1160020 |
| chr7_4 | mRNA | 49757881 | 49759716 | 49757881 | ID=Msa1160020-mRNA-1;Parent=Msa1160020;Name=Msa1160020-mRNA-1;_AED=0.34;_eAED=0.34;_QI=196|0.75|0.6|1|0.5|0.4|5|0|148 |
| chr7_4 | exon | 49757881 | 49758145 | 49757881 | ID=Msa1160020-mRNA-1:exon:13760;Parent=Msa1160020-mRNA-1 |
| chr7_4 | exon | 49758718 | 49758795 | 49758718 | ID=Msa1160020-mRNA-1:exon:13761;Parent=Msa1160020-mRNA-1 |
| chr7_4 | exon | 49758946 | 49758979 | 49758946 | ID=Msa1160020-mRNA-1:exon:13762;Parent=Msa1160020-mRNA-1 |
| chr7_4 | exon | 49759106 | 49759230 | 49759106 | ID=Msa1160020-mRNA-1:exon:13763;Parent=Msa1160020-mRNA-1 |
| chr7_4 | exon | 49759576 | 49759716 | 49759576 | ID=Msa1160020-mRNA-1:exon:13764;Parent=Msa1160020-mRNA-1 |
| chr7_4 | five_prime_UTR | 49757881 | 49758076 | 49757881 | ID=Msa1160020-mRNA-1:five_prime_utr;Parent=Msa1160020-mRNA-1 |
| chr7_4 | CDS | 49758077 | 49758145 | 49758077 | ID=Msa1160020-mRNA-1:cds;Parent=Msa1160020-mRNA-1 |
| chr7_4 | CDS | 49758718 | 49758795 | 49758718 | ID=Msa1160020-mRNA-1:cds;Parent=Msa1160020-mRNA-1 |
| chr7_4 | CDS | 49758946 | 49758979 | 49758946 | ID=Msa1160020-mRNA-1:cds;Parent=Msa1160020-mRNA-1 |
| chr7_4 | CDS | 49759106 | 49759230 | 49759106 | ID=Msa1160020-mRNA-1:cds;Parent=Msa1160020-mRNA-1 |
| chr7_4 | CDS | 49759576 | 49759716 | 49759576 | ID=Msa1160020-mRNA-1:cds;Parent=Msa1160020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
