AlfalfaGEDB | Msa1034790

M. sativa cultivar zhongmu-4 / Msa1034790

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680
PFAM: PF03169.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1034790	RYR45295.1	69.340	1484	407	7	40	1522	751	2187	2154
Msa1034790	RYR45295.1	69.986	733	206	4	36	767	1463	2182	1082
Msa1034790	RYR45295.1	70.553	1501	382	9	26	1520	1	1447	2210

Showing 1 to 3 of 3 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1034790	sp\|Q9FG72\|OPT1_ARATH	66.045	751	254	1	773	1522	4	754	0.0	1041
Msa1034790	sp\|Q9FG72\|OPT1_ARATH	64.753	749	260	2	18	765	2	747	0.0	1019

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1034790	A0A445C2Y3	69.340	1484	407	7	40	1522	751	2187	2154
Msa1034790	A0A445C2Y3	69.986	733	206	4	36	767	1463	2182	1082
Msa1034790	A0A445C2Y3	70.553	1501	382	9	26	1520	1	1447	2210

Showing 1 to 3 of 3 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0685390	Msa1034790	0.805038	1.618747e-49	-8.615850e-47
Msa1034790	Msa1115680	0.880719	4.354261e-70	-8.615850e-47
Msa1034790	Msa1162160	0.895016	1.429249e-75	-8.615850e-47
Msa1034790	Msa1465980	0.877029	8.719078e-69	-8.615850e-47

Showing 1 to 4 of 4 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1034790	MtrunA17_Chr7g0257931	96.138	751	29	0	772	1522	1	751	1483
Msa1034790	MtrunA17_Chr7g0257931	90.528	739	70	0	27	765	6	744	1389
Msa1034790	MtrunA17_Chr7g0257941	95.319	769	36	0	1	769	11	779	1466
Msa1034790	MtrunA17_Chr7g0257941	91.129	744	66	0	776	1519	36	779	1375
Msa1034790	MtrunA17_Chr7g0257971	84.575	765	81	1	1	765	1	728	1309
Msa1034790	MtrunA17_Chr7g0257971	83.957	748	83	1	776	1523	26	736	1276
Msa1034790	MtrunA17_Chr5g0446791	77.778	729	161	1	795	1522	23	751	1229
Msa1034790	MtrunA17_Chr5g0446791	77.762	724	160	1	45	767	23	746	1215
Msa1034790	MtrunA17_Chr5g0446821	73.210	754	168	2	803	1522	19	772	1174
Msa1034790	MtrunA17_Chr5g0446821	72.897	749	169	2	53	767	19	767	1158

Showing 1 to 10 of 28 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1034790	AT5G55930.1	66.045	751	254	1	773	1522	4	754	1041
Msa1034790	AT5G55930.1	64.753	749	260	2	18	765	2	747	1019
Msa1034790	AT4G26590.1	66.667	723	240	1	801	1522	30	752	1034
Msa1034790	AT4G26590.1	66.295	718	241	1	51	767	30	747	1023
Msa1034790	AT1G09930.1	52.853	736	328	9	792	1522	12	733	823
Msa1034790	AT1G09930.1	52.949	729	324	9	42	765	12	726	810
Msa1034790	AT4G10770.1	54.457	718	317	6	803	1520	55	762	816
Msa1034790	AT4G10770.1	54.418	713	315	6	53	765	55	757	801
Msa1034790	AT4G16370.1	51.478	744	339	10	792	1522	2	736	783
Msa1034790	AT4G16370.1	49.202	752	356	9	21	767	1	731	747

Showing 1 to 10 of 20 entries

Previous1 2Next

Find 358 sgRNAs with CRISPR-Local

Find 590 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGGTTCACAAATGCA+AGG	0.622630	7_1:+70443968	None:intergenic
AAAACTGGTTCACAAATGCA+AGG	0.622630	7_1:+70449548	None:intergenic
AAAAGAATGTTTACCAAAGA+CGG	0.539643	7_1:-70442353	Msa1034790:CDS
AAACAGAAGTGATTCTCAAA+GGG	0.539629	7_1:+70443929	None:intergenic
AAAGCCTTCACAAGCTACCA+AGG	0.627712	7_1:+70442832	None:intergenic
AAAGCCTTCGCAGGCTAGTA+AGG	0.462568	7_1:+70448412	None:intergenic
AAATTGCTCCAATAAGCAAT+TGG	0.467369	7_1:+70448803	None:intergenic
AAATTGTTCCAATAGGCAAT+TGG	0.461699	7_1:+70443223	None:intergenic
AACACTGTCGCTGGCTTCTT+AGG	0.360659	7_1:-70448902	Msa1034790:CDS
AACACTGTTGCAGGCTTCTT+AGG	0.320938	7_1:-70443322	Msa1034790:CDS

Showing 1 to 10 of 358 entries

Previous1 2 3 4 5…36Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATCATTCATTAGGTCATGTA+TGG	+	chr7_1:70442342-70442361	None:intergenic	30.0%
TAATCCATGAAACAAAGCAA+AGG	+	chr7_1:70442393-70442412	None:intergenic	30.0%
ATGGAGGATTATCTCAAAAT+AGG	-	chr7_1:70442430-70442449	Msa1034790:CDS	30.0%
TGGAGGATTATCTCAAAATA+GGG	-	chr7_1:70442431-70442450	Msa1034790:CDS	30.0%
TTTGAAAATCACTTCTGTCT+CGG	-	chr7_1:70442641-70442660	Msa1034790:CDS	30.0%
AAAAAGACCAGGTTGTAAAA+GGG	+	chr7_1:70442734-70442753	None:intergenic	30.0%
ACATGTTCTTTCAAAGAGAA+TGG	+	chr7_1:70442771-70442790	None:intergenic	30.0%
CTTTGCCATTATCAACATAA+TGG	-	chr7_1:70443289-70443308	Msa1034790:CDS	30.0%
AAATTGCTCCAATAAGCAAT+TGG	+	chr7_1:70443347-70443366	None:intergenic	30.0%
AATGTATGAGAACTAATGAG+CGG	+	chr7_1:70443389-70443408	None:intergenic	30.0%

Showing 1 to 10 of 590 entries

Previous1 2 3 4 5…59Next

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	70441929	70450240	70441929	ID=Msa1034790;Name=Msa1034790
chr7_1	mRNA	70441929	70450240	70441929	ID=Msa1034790-mRNA-1;Parent=Msa1034790;Name=Msa1034790-mRNA-1;_AED=0.26;_eAED=0.26;_QI=32\|0.66\|0.5\|1\|1\|1\|4\|0\|1523
chr7_1	exon	70441929	70444175	70441929	ID=Msa1034790-mRNA-1:exon:16867;Parent=Msa1034790-mRNA-1
chr7_1	exon	70445413	70445447	70445413	ID=Msa1034790-mRNA-1:exon:16866;Parent=Msa1034790-mRNA-1
chr7_1	exon	70447541	70449755	70447541	ID=Msa1034790-mRNA-1:exon:16865;Parent=Msa1034790-mRNA-1
chr7_1	exon	70450134	70450240	70450134	ID=Msa1034790-mRNA-1:exon:16864;Parent=Msa1034790-mRNA-1
chr7_1	five_prime_UTR	70450209	70450240	70450209	ID=Msa1034790-mRNA-1:five_prime_utr;Parent=Msa1034790-mRNA-1
chr7_1	CDS	70450134	70450208	70450134	ID=Msa1034790-mRNA-1:cds;Parent=Msa1034790-mRNA-1
chr7_1	CDS	70447541	70449755	70447541	ID=Msa1034790-mRNA-1:cds;Parent=Msa1034790-mRNA-1
chr7_1	CDS	70445413	70445447	70445413	ID=Msa1034790-mRNA-1:cds;Parent=Msa1034790-mRNA-1
chr7_1	CDS	70441929	70444175	70441929	ID=Msa1034790-mRNA-1:cds;Parent=Msa1034790-mRNA-1

Gene Sequence

>Msa1034790

ATGAAGAAGGATGCATCACCTCTCTCTTCAGAGAATTGCATGTCTATTACCACCCCTCTTCTTGACTTGGAAAAGGTAGCTGAGATATCAAATGGAGGATTATCTCAAAATAGGGTCATAGAGGATGCACAAAGTGATGAATATAGCATTAATGATAGTCCTATTGAGCAAGTGAGGCTAACAGTTCCGATCACCGATGACTCTTCTCAACCGGCGCTAACATTCCGGACATGGGTTCTAGGGTTAGCATCATGTATTCTCCTTGCATTTGTGAACCAGTTTTTAGGCTACAGAACCAATCCTTTGAAAATCACTTCTGTCTCGGCTCAGATTATTGCCCTCCCACTTGGGAAACTTATGGCTGCAACACTTCCCACAAAACCAATTCAAGTCCCTTTTACAACCTGGTCTTTTTCGTTGAATCCGGGGCCATTCTCTTTGAAAGAACATGTGTTGATTACCATCTTTGCTAGCTCGGGATCTAGTAGTGTTTATGCAATCAACATAATCACCATTGTTAAAGCTTTCTATCACAGAAGCATCCATCCCGTCGCGGCTTATTTGTTGGCGCTATCGACTCAGATGCTAGGGTATGGATGGGCTGGGATTTTCAGAAGGTTCCTTGTTGATTCACCTTACATGTGGTGGCCTGAAAGCCTTGTGCAGGTTTCTCTATTTAGAGCATTTCATGAAAAAGAAAAAAGGCCTAGAGGAGGAACATCCAGGCTGCAATTCTTTTTCGTAGTCTTCGTAGCTAGCTTTGCGTATTACATCATTCCAGGATACTTTTTCCAAGCAATATCAACCATCTCTTTTGTATGTTTGATTTGGAAAGATTCCATCACTGCGCAACAGATTGGTTCAGGCATGAAAGGACTTGGTATTGGTTCATTCGGCCTTGATTGGAACACTGTCGCTGGCTTCTTAGGTAGTCCTTTGGCTGTTCCTGGCTTTGCCATTATCAACATAATGGCTGGATTTTTATTGTATATGTATGTTTTGATTCCAATTGCTTATTGGAGCAATTTGTACGATGCAAAAAAGTTTCCGCTCATTAGTTCTCATACATTTGACTCTACCGGTGCAACATACAATGTTACTCGGATTCTCAATACTGAAACGTTTGACATTGATATGGAAAGTTACAACAATTACAGCAAGATATATCTAAGTATCACTTTTGCATTCGAATACGGATTATGCTTTGCAGCTCTTACAGCCACAATTTCACATGTTGTCCTCTTCCATGGAGAAATGATTCTTCAGATGTGGAAGAAGACAACAACTTCACTAAAAAACCAACTTGGAGACGTCCATACAAGGATTATGAAGAAAAACTATGAACAAGTCCCTGAATGGTGGTTTGTCACCATTTTAATTTTAATGGTTATGATGGCCTTACTAGCCTGCGAAGGCTTTGGCAAGCAGCTCCAACTTCCATGGTGGGGAATCTTACTTTCTCTAACAATCGCATTAATTTTCACCTTACCAATTGGTGTCATTGAAGCAACAACAAACATAAGAACAGGTCTCAATGTAATCACAGAGTTGGTAATTGGTTTCATCTATCCCGGAAAGCCACTAGCTAATGTAGCATTCAAAACATATGGCCATATCAGCATGGTACAAGCACTTGGTTTTCTTGGTGACTTCAAATTAGGTCACTATATGAAAATTGCACCAAAATCAATGTTCATTGTGCAACTTGTAGGCACAGTAGTTGCTTCATCTGTTCACTTTGGAACCGCATGGTGGCTTCTAACATCTATTGAGAATATATGTGATGAATCATTGCTGCCAAAAGGTAGTCCTTGGACATGTCCCGGTGATGATGTGTTTTACAATGCTTCAATCATATGGGGAGTTGTAGGGCCAAAGAGAATGTTTACCAAAGACGGCGTTTATCCCGAATTGAATTGGTTTTTCCTTATCGGTCTAATCGCACCAGTTCCCATGTGGCTTCTTTCTCTCAAATTTCCCGACCAAAAGTGGATTCAATTCATCAACATTCCTATTATCATTGCAGGTGCATCTGACATCCCACCAGTGAGATCTGTGAATTATATTACTTGGGGATTTGTTGGAATATTTTTCAATTTCTATGTTTATAGAAAGTTCAAAGCATGGTGGGCTAGACATACTTATATCCTTTCAGCTGGTTTAGATGCTGGAGTTGCCTTTATAGGTTTACTACTTTATTTTACTCTTCAATCTTATGGTATTTATGGTCCAACTTGGTGGGGTCTTGAACCAGCCCACTGCCCTTTGGCTAGATGCCCTACAGCTCCAGGAATAGCTAGCATTGCTGCAAGTATGGTATTGTTGGAAGCTGAGATATCAAGCAGTGGAGTGTCTCAAAATAGGGTCTTAGAGGATGCAGAGAAAGATGAATACAACATTAATGATAGTCCCATTGAGCAAGTGAGGTTAACAGTTCCAATCACTGATGACCCTTCTCAGCCAGCACTAACATTCAGGACATGGATTCTAGGCTTAGCATCATGTGTTCTCCTTGCATTTGTGAACCAGTTTTTAGGCTACAGAACCAACCCTTTGAGAATCACTTCTGTTTCAGCACAGATCATCGCACTCCCACTTGGGAAGCTTATGGCTGCAACACTTCCCACAAATTCAATTCAAGTCCCTTTAACAACCTGGTCTTTTTCATTGAATCCGGGGCCATTCTCTTTGAAAGAACATGCGTTGATCACCATCTTTGCTAGCTCAGGATCTAACAGTGTATATGCAATTGGGATAGTCACAATTGTTAAGGCTTTTTATCACAAAGACATCCATCCAGTAGCGGCTTATTTTCTAGCGCTATCAACTCAAATGCTAGGGTATGGATGGGCTGGTATTTTCAGAAGGTTCCTTGTTGATTCACCTTACATGTGGTGGCCTGAAAACCTTGTGCAAGTGTCTCTATTTAGGGCATTTCATGAAAAAGAAAAAAGGCCTAAAGGAGGAACTTCTAGGCTGCAATTCTTTTTCGTAGTCTTTGTAGCTAGCTTCGCATATTACATCGTTCCTGGCTACTTTTTCCAAGCAATATCAGCCGTCTCTTTTGTTTGTTTGATTTGGAAAGACTCCATCACTGCACAACAGATCGGTTCCGGCATGAAAGGCCTCGGTATTGGTTCATTTGGCCTTGATTGGAACACTGTTGCAGGCTTCTTAGGAAGTCCTTTGGCTGTTCCTGGCTTTGCCATCATCAACATAACGGCTGGATTTTTCTTGTATATGTATGTTTTGATACCAATTGCCTATTGGAACAATTTATATGATGCTCAAAAGTTTCCACTCATTAGCTCTCACACATTTGACTCTACCGGTGCTACTTACAACGTTACTCGAATTCTAAATACCAAAACTTTTGACATTGATATTGAAAGTTACAACAATTACAGCAAGATCTATTTGAGTGTCACGTTTGCTTTCCAGTATGGATTGAGCTTTGCAGCTCTTACAGCTACTATTTCACATGTTGTCCTCTTCCACGGAAAAATGATACTTCAGATGTGGAAGAAGACAACGGGTTCGTTAACACATCAACTCGGAGATGTGCATACAAGAATCATGAAGAAAAACTATGAACAGGTTCCTGACTGGTGGTTTCTCGCTATTCTGATTCTAATGGTTATGATGGCCTTGGTAGCTTGTGAAGGCTTTGGAAAACAGCTCCAACTTCCATGGTGGGGAGTCTTACTTTCTCTAGCAATTGCATTGGTTTTCACCTTGCCAATTGGTGTTATTCAAGCAACAACAAACATAAGAAAAGGTCTCAATGTGATCACAGAATTGGTAATTGGTTTCATCTATCCAGGAAAGCCACTTGCTAATGTAGCTTTCAAAACATATGGCCATATCAGCATGGTACAGGCACTAGGGTTTCTTGAAGACTTCAAATTAGGCCATTATATGAAAATTCCACCAAAATCAATGTTCAGTGTGCAGCTAGTAGGCACTGTAGTTTCTTCATCTGTCCACTTTGGAACAGCATGGTGGCTTCTAACTTCTATCGAGAACATATGCGATGAATCATTATTGCCAAAAGGAAGTCCTTGGACATGTCCTGGTGATGATGTATTTTACAATGCTTCGATCATATGGGGAGTTGTAGGGCCAAAAAGAATGTTTACCAAAGACGGAGTTTATCCTGAGATGAATTGGTTTTTCCTTATTGGTCTACTTGCACCTGTTCCAGTGTGGCTTCTTTCTCTCAAATTTCCTAACCAAAAGTGGATTCAACTCATTAACATTCCTATTATCGCTGCAGGTGCATCTGGCATTCCACCAGTGAGATCTGTGAATTACATTACTTGGGGAATTGTTGGCATGGTTTTCAATTTCTATGTTTATAGAAAGTTCAAAGCATGGTGGGCTAGACATACTTATATCCTTTCAGCTGGTTTAGATGCTGGAGTTGCCTTTATAGGTTTACTACTTTATTTTGCTCTTCAATCTTATGGTATTTATGGTCCAACTTGGTGGGGTCTTGAAGCAGATCATTGCCCTTTGGCTAGATGTCCTACAGCTCCAGGTGTACATTCAGAGGGGTGTCATGTTCCTTGA

Protein sequence

>Msa1034790

MKKDASPLSSENCMSITTPLLDLEKVAEISNGGLSQNRVIEDAQSDEYSINDSPIEQVRLTVPITDDSSQPALTFRTWVLGLASCILLAFVNQFLGYRTNPLKITSVSAQIIALPLGKLMAATLPTKPIQVPFTTWSFSLNPGPFSLKEHVLITIFASSGSSSVYAINIITIVKAFYHRSIHPVAAYLLALSTQMLGYGWAGIFRRFLVDSPYMWWPESLVQVSLFRAFHEKEKRPRGGTSRLQFFFVVFVASFAYYIIPGYFFQAISTISFVCLIWKDSITAQQIGSGMKGLGIGSFGLDWNTVAGFLGSPLAVPGFAIINIMAGFLLYMYVLIPIAYWSNLYDAKKFPLISSHTFDSTGATYNVTRILNTETFDIDMESYNNYSKIYLSITFAFEYGLCFAALTATISHVVLFHGEMILQMWKKTTTSLKNQLGDVHTRIMKKNYEQVPEWWFVTILILMVMMALLACEGFGKQLQLPWWGILLSLTIALIFTLPIGVIEATTNIRTGLNVITELVIGFIYPGKPLANVAFKTYGHISMVQALGFLGDFKLGHYMKIAPKSMFIVQLVGTVVASSVHFGTAWWLLTSIENICDESLLPKGSPWTCPGDDVFYNASIIWGVVGPKRMFTKDGVYPELNWFFLIGLIAPVPMWLLSLKFPDQKWIQFINIPIIIAGASDIPPVRSVNYITWGFVGIFFNFYVYRKFKAWWARHTYILSAGLDAGVAFIGLLLYFTLQSYGIYGPTWWGLEPAHCPLARCPTAPGIASIAASMVLLEAEISSSGVSQNRVLEDAEKDEYNINDSPIEQVRLTVPITDDPSQPALTFRTWILGLASCVLLAFVNQFLGYRTNPLRITSVSAQIIALPLGKLMAATLPTNSIQVPLTTWSFSLNPGPFSLKEHALITIFASSGSNSVYAIGIVTIVKAFYHKDIHPVAAYFLALSTQMLGYGWAGIFRRFLVDSPYMWWPENLVQVSLFRAFHEKEKRPKGGTSRLQFFFVVFVASFAYYIVPGYFFQAISAVSFVCLIWKDSITAQQIGSGMKGLGIGSFGLDWNTVAGFLGSPLAVPGFAIINITAGFFLYMYVLIPIAYWNNLYDAQKFPLISSHTFDSTGATYNVTRILNTKTFDIDIESYNNYSKIYLSVTFAFQYGLSFAALTATISHVVLFHGKMILQMWKKTTGSLTHQLGDVHTRIMKKNYEQVPDWWFLAILILMVMMALVACEGFGKQLQLPWWGVLLSLAIALVFTLPIGVIQATTNIRKGLNVITELVIGFIYPGKPLANVAFKTYGHISMVQALGFLEDFKLGHYMKIPPKSMFSVQLVGTVVSSSVHFGTAWWLLTSIENICDESLLPKGSPWTCPGDDVFYNASIIWGVVGPKRMFTKDGVYPEMNWFFLIGLLAPVPVWLLSLKFPNQKWIQLINIPIIAAGASGIPPVRSVNYITWGIVGMVFNFYVYRKFKAWWARHTYILSAGLDAGVAFIGLLLYFALQSYGIYGPTWWGLEADHCPLARCPTAPGVHSEGCHVP*