Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1465980 | XP_003625171.2 | 96.252 | 747 | 28 | 0 | 1 | 747 | 5 | 751 | 0.0 | 1474 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1465980 | sp|Q9FG72|OPT1_ARATH | 66.043 | 748 | 253 | 1 | 1 | 747 | 7 | 754 | 0.0 | 1038 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1465980 | G7KTL1 | 96.252 | 747 | 28 | 0 | 1 | 747 | 5 | 751 | 0.0 | 1474 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0007810 | Msa1465980 | 0.815813 | 7.628142e-52 | -8.615850e-47 |
Msa0014970 | Msa1465980 | 0.838732 | 2.414220e-57 | -8.615850e-47 |
Msa0048410 | Msa1465980 | 0.805996 | 1.019121e-49 | -8.615850e-47 |
Msa0050320 | Msa1465980 | 0.834557 | 2.797099e-56 | -8.615850e-47 |
Msa0056220 | Msa1465980 | 0.811280 | 7.577545e-51 | -8.615850e-47 |
Msa0056230 | Msa1465980 | 0.812280 | 4.589780e-51 | -8.615850e-47 |
Msa0090350 | Msa1465980 | 0.807288 | 5.438845e-50 | -8.615850e-47 |
Msa0091220 | Msa1465980 | 0.804944 | 1.693892e-49 | -8.615850e-47 |
Msa0099090 | Msa1465980 | 0.836389 | 9.628861e-57 | -8.615850e-47 |
Msa0108500 | Msa1465980 | 0.818484 | 1.914131e-52 | -8.615850e-47 |
Msa0117300 | Msa1465980 | 0.801531 | 8.618564e-49 | -8.615850e-47 |
Msa1352630 | Msa1465980 | 0.815460 | 9.139827e-52 | -8.615850e-47 |
Msa1359880 | Msa1465980 | 0.830091 | 3.570102e-55 | -8.615850e-47 |
Msa1363310 | Msa1465980 | 0.809607 | 1.740359e-50 | -8.615850e-47 |
Msa1384410 | Msa1465980 | 0.826026 | 3.400612e-54 | -8.615850e-47 |
Msa1384970 | Msa1465980 | 0.818150 | 2.277942e-52 | -8.615850e-47 |
Msa1386580 | Msa1465980 | 0.809780 | 1.597994e-50 | -8.615850e-47 |
Msa1392570 | Msa1465980 | 0.816118 | 6.520056e-52 | -8.615850e-47 |
Msa1446220 | Msa1465980 | 0.804965 | 1.676857e-49 | -8.615850e-47 |
Msa1464470 | Msa1465980 | 0.802066 | 6.691312e-49 | -8.615850e-47 |
Msa0604890 | Msa1465980 | 0.829056 | 6.372172e-55 | -8.615850e-47 |
Msa0617470 | Msa1465980 | 0.809855 | 1.539660e-50 | -8.615850e-47 |
Msa0635070 | Msa1465980 | 0.812460 | 4.193582e-51 | -8.615850e-47 |
Msa0646180 | Msa1465980 | 0.831498 | 1.613587e-55 | -8.615850e-47 |
Msa0649530 | Msa1465980 | 0.808822 | 2.564081e-50 | -8.615850e-47 |
Msa0659020 | Msa1465980 | 0.812930 | 3.308034e-51 | -8.615850e-47 |
Msa0685390 | Msa1465980 | 0.817183 | 3.762883e-52 | -8.615850e-47 |
Msa0691740 | Msa1465980 | 0.817862 | 2.646574e-52 | -8.615850e-47 |
Msa0693560 | Msa1465980 | 0.801274 | 9.728545e-49 | -8.615850e-47 |
Msa0700250 | Msa1465980 | 0.812204 | 4.767777e-51 | -8.615850e-47 |
Msa0702020 | Msa1465980 | 0.801346 | 9.401518e-49 | -8.615850e-47 |
Msa0714060 | Msa1465980 | 0.806561 | 7.750056e-50 | -8.615850e-47 |
Msa0722660 | Msa1465980 | 0.806524 | 7.888086e-50 | -8.615850e-47 |
Msa0734190 | Msa1465980 | 0.814440 | 1.538727e-51 | -8.615850e-47 |
Msa0747660 | Msa1465980 | 0.804730 | 1.877695e-49 | -8.615850e-47 |
Msa0768240 | Msa1465980 | 0.804062 | 2.586686e-49 | -8.615850e-47 |
Msa0829770 | Msa1465980 | 0.818794 | 1.627847e-52 | -8.615850e-47 |
Msa0136180 | Msa1465980 | 0.805695 | 1.178836e-49 | -8.615850e-47 |
Msa0154720 | Msa1465980 | 0.833421 | 5.386436e-56 | -8.615850e-47 |
Msa0160650 | Msa1465980 | 0.821196 | 4.590473e-53 | -8.615850e-47 |
Msa0185180 | Msa1465980 | 0.810553 | 1.088760e-50 | -8.615850e-47 |
Msa0225070 | Msa1465980 | 0.809935 | 1.479227e-50 | -8.615850e-47 |
Msa0229750 | Msa1465980 | 0.806685 | 7.294209e-50 | -8.615850e-47 |
Msa0232660 | Msa1465980 | 0.816259 | 6.064882e-52 | -8.615850e-47 |
Msa0234660 | Msa1465980 | 0.812577 | 3.952455e-51 | -8.615850e-47 |
Msa1257960 | Msa1465980 | 0.805944 | 1.045117e-49 | -8.615850e-47 |
Msa1266120 | Msa1465980 | 0.802933 | 4.435146e-49 | -8.615850e-47 |
Msa1298980 | Msa1465980 | 0.816429 | 5.556890e-52 | -8.615850e-47 |
Msa1307110 | Msa1465980 | 0.830106 | 3.539620e-55 | -8.615850e-47 |
Msa1320660 | Msa1465980 | 0.816118 | 6.520056e-52 | -8.615850e-47 |
Msa1329020 | Msa1465980 | 0.805826 | 1.106425e-49 | -8.615850e-47 |
Msa1332340 | Msa1465980 | 0.802085 | 6.632711e-49 | -8.615850e-47 |
Msa0371350 | Msa1465980 | 0.809888 | 1.514087e-50 | -8.615850e-47 |
Msa0375930 | Msa1465980 | 0.824685 | 7.059617e-54 | -8.615850e-47 |
Msa0378620 | Msa1465980 | 0.811871 | 5.636226e-51 | -8.615850e-47 |
Msa0387740 | Msa1465980 | 0.814461 | 1.522953e-51 | -8.615850e-47 |
Msa0412580 | Msa1465980 | 0.809399 | 1.929155e-50 | -8.615850e-47 |
Msa0419420 | Msa1465980 | 0.810758 | 9.830648e-51 | -8.615850e-47 |
Msa0424570 | Msa1465980 | 0.824889 | 6.319903e-54 | -8.615850e-47 |
Msa0436590 | Msa1465980 | 0.803613 | 3.206377e-49 | -8.615850e-47 |
Msa0436600 | Msa1465980 | 0.809000 | 2.349011e-50 | -8.615850e-47 |
Msa0436610 | Msa1465980 | 0.825606 | 4.277981e-54 | -8.615850e-47 |
Msa0438680 | Msa1465980 | 0.815094 | 1.102188e-51 | -8.615850e-47 |
Msa0457070 | Msa1465980 | 0.814864 | 1.239975e-51 | -8.615850e-47 |
Msa0998940 | Msa1465980 | 0.819898 | 9.117197e-53 | -8.615850e-47 |
Msa1018210 | Msa1465980 | 0.823429 | 1.391849e-53 | -8.615850e-47 |
Msa1034790 | Msa1465980 | 0.877029 | 8.719078e-69 | -8.615850e-47 |
Msa1038610 | Msa1465980 | 0.810573 | 1.077939e-50 | -8.615850e-47 |
Msa1049820 | Msa1465980 | 0.819706 | 1.008885e-52 | -8.615850e-47 |
Msa1055520 | Msa1465980 | 0.807960 | 3.915411e-50 | -8.615850e-47 |
Msa1070630 | Msa1465980 | 0.808348 | 3.237520e-50 | -8.615850e-47 |
Msa1078590 | Msa1465980 | 0.822387 | 2.433831e-53 | -8.615850e-47 |
Msa1078760 | Msa1465980 | 0.813133 | 2.986783e-51 | -8.615850e-47 |
Msa1089130 | Msa1465980 | 0.806635 | 7.473459e-50 | -8.615850e-47 |
Msa1090020 | Msa1465980 | 0.807443 | 5.041980e-50 | -8.615850e-47 |
Msa1093190 | Msa1465980 | 0.809598 | 1.748263e-50 | -8.615850e-47 |
Msa1101610 | Msa1465980 | 0.819376 | 1.199895e-52 | -8.615850e-47 |
Msa1104020 | Msa1465980 | 0.823698 | 1.203935e-53 | -8.615850e-47 |
Msa0264580 | Msa1465980 | 0.804624 | 1.975740e-49 | -8.615850e-47 |
Msa0267450 | Msa1465980 | 0.804085 | 2.558637e-49 | -8.615850e-47 |
Msa0267510 | Msa1465980 | 0.800937 | 1.140267e-48 | -8.615850e-47 |
Msa0295030 | Msa1465980 | 0.800723 | 1.260448e-48 | -8.615850e-47 |
Msa0297270 | Msa1465980 | 0.804122 | 2.513681e-49 | -8.615850e-47 |
Msa0331070 | Msa1465980 | 0.805918 | 1.058436e-49 | -8.615850e-47 |
Msa0339970 | Msa1465980 | 0.804936 | 1.700129e-49 | -8.615850e-47 |
Msa0362440 | Msa1465980 | 0.809130 | 2.202949e-50 | -8.615850e-47 |
Msa1112050 | Msa1465980 | 0.812335 | 4.465246e-51 | -8.615850e-47 |
Msa1115680 | Msa1465980 | 0.851324 | 9.559248e-61 | -8.615850e-47 |
Msa1129660 | Msa1465980 | 0.805084 | 1.583474e-49 | -8.615850e-47 |
Msa1147600 | Msa1465980 | 0.829481 | 5.023917e-55 | -8.615850e-47 |
Msa1158450 | Msa1465980 | 0.801041 | 1.085766e-48 | -8.615850e-47 |
Msa1162160 | Msa1465980 | 0.899935 | 1.209973e-77 | -8.615850e-47 |
Msa1169590 | Msa1465980 | 0.822449 | 2.354800e-53 | -8.615850e-47 |
Msa1172070 | Msa1465980 | 0.804934 | 1.701692e-49 | -8.615850e-47 |
Msa1182530 | Msa1465980 | 0.806692 | 7.270965e-50 | -8.615850e-47 |
Msa1205270 | Msa1465980 | 0.807798 | 4.238387e-50 | -8.615850e-47 |
Msa1207710 | Msa1465980 | 0.801161 | 1.026206e-48 | -8.615850e-47 |
Msa0483090 | Msa1465980 | 0.819866 | 9.274864e-53 | -8.615850e-47 |
Msa0483160 | Msa1465980 | 0.800404 | 1.464394e-48 | -8.615850e-47 |
Msa0516000 | Msa1465980 | 0.821669 | 3.571230e-53 | -8.615850e-47 |
Msa0526520 | Msa1465980 | 0.807092 | 5.984316e-50 | -8.615850e-47 |
Msa0549550 | Msa1465980 | 0.831377 | 1.727553e-55 | -8.615850e-47 |
Msa0555510 | Msa1465980 | 0.818122 | 2.310633e-52 | -8.615850e-47 |
Msa0571900 | Msa1465980 | 0.812808 | 3.518261e-51 | -8.615850e-47 |
Msa0853150 | Msa1465980 | 0.812961 | 3.257221e-51 | -8.615850e-47 |
Msa0868050 | Msa1465980 | 0.805602 | 1.232971e-49 | -8.615850e-47 |
Msa0869320 | Msa1465980 | 0.804117 | 2.519173e-49 | -8.615850e-47 |
Msa0899080 | Msa1465980 | 0.803439 | 3.484797e-49 | -8.615850e-47 |
Msa0934290 | Msa1465980 | 0.815021 | 1.144189e-51 | -8.615850e-47 |
Msa0935930 | Msa1465980 | 0.802453 | 5.571174e-49 | -8.615850e-47 |
Msa0967250 | Msa1465980 | 0.814842 | 1.253924e-51 | -8.615850e-47 |
Msa0971780 | Msa1465980 | 0.814932 | 1.197460e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1465980 | MtrunA17_Chr7g0257931 | 96.252 | 747 | 28 | 0 | 1 | 747 | 5 | 751 | 0.0 | 1474 |
Msa1465980 | MtrunA17_Chr7g0257941 | 91.263 | 744 | 65 | 0 | 1 | 744 | 36 | 779 | 0.0 | 1373 |
Msa1465980 | MtrunA17_Chr7g0257971 | 84.091 | 748 | 82 | 1 | 1 | 748 | 26 | 736 | 0.0 | 1274 |
Msa1465980 | MtrunA17_Chr5g0446791 | 77.503 | 729 | 163 | 1 | 20 | 747 | 23 | 751 | 0.0 | 1225 |
Msa1465980 | MtrunA17_Chr5g0446821 | 72.944 | 754 | 170 | 2 | 28 | 747 | 19 | 772 | 0.0 | 1169 |
Msa1465980 | MtrunA17_Chr5g0446811 | 76.190 | 546 | 129 | 1 | 203 | 747 | 16 | 561 | 0.0 | 907 |
Msa1465980 | MtrunA17_Chr3g0119871 | 52.752 | 745 | 341 | 6 | 3 | 747 | 2 | 735 | 0.0 | 830 |
Msa1465980 | MtrunA17_Chr8g0360211 | 51.837 | 735 | 348 | 4 | 11 | 745 | 8 | 736 | 0.0 | 819 |
Msa1465980 | MtrunA17_Chr2g0279871 | 52.705 | 721 | 326 | 8 | 33 | 747 | 28 | 739 | 0.0 | 802 |
Msa1465980 | MtrunA17_Chr4g0049511 | 51.734 | 721 | 334 | 8 | 33 | 747 | 27 | 739 | 0.0 | 789 |
Msa1465980 | MtrunA17_Chr4g0076281 | 50.338 | 739 | 352 | 8 | 17 | 747 | 9 | 740 | 0.0 | 780 |
Msa1465980 | MtrunA17_Chr3g0141131 | 50.069 | 725 | 343 | 10 | 28 | 745 | 11 | 723 | 0.0 | 746 |
Msa1465980 | MtrunA17_Chr5g0446801 | 79.429 | 175 | 36 | 0 | 28 | 202 | 20 | 194 | 4.52e-95 | 295 |
Msa1465980 | MtrunA17_Chr4g0075771 | 29.193 | 322 | 123 | 9 | 218 | 534 | 1 | 222 | 2.78e-31 | 122 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1465980 | AT5G55930.1 | 66.043 | 748 | 253 | 1 | 1 | 747 | 7 | 754 | 0.0 | 1038 |
Msa1465980 | AT4G26590.1 | 66.667 | 723 | 240 | 1 | 26 | 747 | 30 | 752 | 0.0 | 1033 |
Msa1465980 | AT1G09930.1 | 52.717 | 736 | 329 | 9 | 17 | 747 | 12 | 733 | 0.0 | 821 |
Msa1465980 | AT4G10770.1 | 54.178 | 718 | 319 | 6 | 28 | 745 | 55 | 762 | 0.0 | 812 |
Msa1465980 | AT4G16370.1 | 51.344 | 744 | 340 | 10 | 17 | 747 | 2 | 736 | 0.0 | 780 |
Msa1465980 | AT5G64410.1 | 50.609 | 739 | 344 | 10 | 18 | 747 | 2 | 728 | 0.0 | 778 |
Msa1465980 | AT4G27730.1 | 51.595 | 721 | 340 | 6 | 30 | 747 | 21 | 735 | 0.0 | 768 |
Msa1465980 | AT5G53520.1 | 50.204 | 737 | 356 | 6 | 12 | 747 | 6 | 732 | 0.0 | 767 |
Msa1465980 | AT5G53510.1 | 51.012 | 741 | 353 | 7 | 10 | 747 | 7 | 740 | 0.0 | 744 |
Msa1465980 | AT4G10770.2 | 53.321 | 557 | 251 | 5 | 189 | 745 | 1 | 548 | 0.0 | 623 |
Find 175 sgRNAs with CRISPR-Local
Find 408 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTGCAAGTGTCTCTATTT+AGG | 0.120127 | tig0045774:-3038 | Msa1465980:CDS |
CTTCAATCTTATGGTATTTA+TGG | 0.129235 | tig0045774:-1491 | Msa1465980:CDS |
GATGCTGGAGTTGCCTTTAT+AGG | 0.223803 | tig0045774:-1533 | Msa1465980:CDS |
GGAAGTCCTTTGGCTGTTCC+TGG | 0.233626 | tig0045774:-2769 | Msa1465980:CDS |
GTGATCACAGAATTGGTAAT+TGG | 0.239288 | tig0045774:-2160 | Msa1465980:CDS |
CTTGATTGGAACACTGTTGC+AGG | 0.239772 | tig0045774:-2799 | Msa1465980:CDS |
TTTCTTGAAGACTTCAAATT+AGG | 0.250755 | tig0045774:-2058 | Msa1465980:CDS |
AATATCAATGTCAAAAGTTT+TGG | 0.270094 | tig0045774:+2582 | Msa1465980:intergenic |
GCAGTGGAGTGTCTCAAAAT+AGG | 0.274606 | tig0045774:-3605 | Msa1465980:CDS |
TGCACACTGAACATTGATTT+TGG | 0.276680 | tig0045774:+2016 | Msa1465980:intergenic |
TGTGCAAGTGTCTCTATTTA+GGG | 0.284754 | tig0045774:-3037 | Msa1465980:CDS |
TTTACAATGCTTCGATCATA+TGG | 0.288476 | tig0045774:-1859 | Msa1465980:CDS |
ACATTAGCAAGTGGCTTTCC+TGG | 0.290246 | tig0045774:+2127 | Msa1465980:intergenic |
ACATTCAGGACATGGATTCT+AGG | 0.317645 | tig0045774:-3477 | Msa1465980:CDS |
AACACTGTTGCAGGCTTCTT+AGG | 0.320938 | tig0045774:-2790 | Msa1465980:CDS |
GGCCTCGGTATTGGTTCATT+TGG | 0.322180 | tig0045774:-2823 | Msa1465980:CDS |
TTGGTTCATTTGGCCTTGAT+TGG | 0.322944 | tig0045774:-2813 | Msa1465980:CDS |
TAATGAGTTGAATCCACTTT+TGG | 0.328319 | tig0045774:+1714 | Msa1465980:intergenic |
GTCACGTTTGCTTTCCAGTA+TGG | 0.329881 | tig0045774:-2523 | Msa1465980:CDS |
CTCAGCCAGCACTAACATTC+AGG | 0.335450 | tig0045774:-3491 | Msa1465980:CDS |
GATCTGTGAATTACATTACT+TGG | 0.340896 | tig0045774:-1646 | Msa1465980:CDS |
TCTAACAGTGTATATGCAAT+TGG | 0.346790 | tig0045774:-3216 | Msa1465980:CDS |
GATGCACCTGCAGCGATAAT+AGG | 0.355794 | tig0045774:+1686 | Msa1465980:intergenic |
ATAAAGTAGTAAACCTATAA+AGG | 0.357120 | tig0045774:+1520 | Msa1465980:intergenic |
AGCCTAGAAGTTCCTCCTTT+AGG | 0.361203 | tig0045774:+2991 | Msa1465980:intergenic |
GTGCCTGTACCATGCTGATA+TGG | 0.363417 | tig0045774:+2086 | Msa1465980:intergenic |
CTCAGGATAAACTCCGTCTT+TGG | 0.366956 | tig0045774:+1808 | Msa1465980:intergenic |
TTGGTAGCTTGTGAAGGCTT+TGG | 0.372329 | tig0045774:-2298 | Msa1465980:CDS |
GTCTCAAAATAGGGTCTTAG+AGG | 0.380393 | tig0045774:-3595 | Msa1465980:CDS |
ATTATCGCTGCAGGTGCATC+TGG | 0.380639 | tig0045774:-1683 | Msa1465980:CDS |
CTTTCAGCTGGTTTAGATGC+TGG | 0.381770 | tig0045774:-1548 | Msa1465980:CDS |
TCAAATTTCCTAACCAAAAG+TGG | 0.381849 | tig0045774:-1727 | Msa1465980:CDS |
TTCGCATATTACATCGTTCC+TGG | 0.382745 | tig0045774:-2937 | Msa1465980:CDS |
TGTCGCTATTCTGATTCTAA+TGG | 0.385125 | tig0045774:-2332 | Msa1465980:CDS |
CATGTCCAAGGACTTCCTTT+TGG | 0.387622 | tig0045774:+1899 | Msa1465980:intergenic |
TACATTACTTGGGGAATTGT+TGG | 0.388014 | tig0045774:-1635 | Msa1465980:CDS |
GGCCTAAAGGAGGAACTTCT+AGG | 0.396529 | tig0045774:-2993 | Msa1465980:CDS |
GTTAACCTCACTTGCTCAAT+GGG | 0.404697 | tig0045774:+3537 | Msa1465980:intergenic |
TATTTATGGTCCAACTTGGT+GGG | 0.405717 | tig0045774:-1477 | Msa1465980:CDS |
TGGGATAGTCACAATTGTTA+AGG | 0.409105 | tig0045774:-3196 | Msa1465980:CDS |
GAGTTTATCCTGAGATGAAT+TGG | 0.414149 | tig0045774:-1799 | Msa1465980:CDS |
TCTCAATGTGATCACAGAAT+TGG | 0.415770 | tig0045774:-2167 | Msa1465980:CDS |
ATCACCATCTTTGCTAGCTC+AGG | 0.420528 | tig0045774:-3240 | Msa1465980:CDS |
GTAATTGGTTTCATCTATCC+AGG | 0.422731 | tig0045774:-2145 | Msa1465980:CDS |
CTGCAAAGCTCAATCCATAC+TGG | 0.429953 | tig0045774:+2509 | Msa1465980:intergenic |
GAAAGAAGCCACACTGGAAC+AGG | 0.430103 | tig0045774:+1752 | Msa1465980:intergenic |
ACTCCCACTTGGGAAGCTTA+TGG | 0.433358 | tig0045774:-3358 | Msa1465980:CDS |
AGGCTTCTTAGGAAGTCCTT+TGG | 0.433485 | tig0045774:-2779 | Msa1465980:CDS |
TCTGATTCTAATGGTTATGA+TGG | 0.436202 | tig0045774:-2323 | Msa1465980:CDS |
TGAAGCAGATCATTGCCCTT+TGG | 0.437431 | tig0045774:-1450 | Msa1465980:CDS |
CTCAAATGCTAGGGTATGGA+TGG | 0.444278 | tig0045774:-3119 | Msa1465980:CDS |
GGCATGAAAGGCCTCGGTAT+TGG | 0.444998 | tig0045774:-2832 | Msa1465980:CDS |
ATCATATAAATTGTTCCAAT+AGG | 0.447406 | tig0045774:+2684 | Msa1465980:intergenic |
TGTTAACCTCACTTGCTCAA+TGG | 0.451574 | tig0045774:+3536 | Msa1465980:intergenic |
AACATTCCTATTATCGCTGC+AGG | 0.451874 | tig0045774:-1692 | Msa1465980:CDS |
CAGTGGAGTGTCTCAAAATA+GGG | 0.454761 | tig0045774:-3604 | Msa1465980:CDS |
ATCTGTGAATTACATTACTT+GGG | 0.455347 | tig0045774:-1645 | Msa1465980:CDS |
AATGTAGCTTTCAAAACATA+TGG | 0.457811 | tig0045774:-2109 | Msa1465980:CDS |
GTATTTATGGTCCAACTTGG+TGG | 0.459637 | tig0045774:-1478 | Msa1465980:CDS |
AGGGACTTGAATTGAATTTG+TGG | 0.460311 | tig0045774:+3323 | Msa1465980:intergenic |
AAATTGTTCCAATAGGCAAT+TGG | 0.461699 | tig0045774:+2691 | Msa1465980:intergenic |
CTGCAACAGTGTTCCAATCA+AGG | 0.465858 | tig0045774:+2800 | Msa1465980:intergenic |
GTTTCTTCATCTGTCCACTT+TGG | 0.468745 | tig0045774:-1977 | Msa1465980:CDS |
GCATGTTCTTTCAAAGAGAA+TGG | 0.470000 | tig0045774:+3267 | Msa1465980:intergenic |
TCGATCATATGGGGAGTTGT+AGG | 0.470682 | tig0045774:-1848 | Msa1465980:CDS |
TTACAATGCTTCGATCATAT+GGG | 0.471225 | tig0045774:-1858 | Msa1465980:CDS |
ATGTTCAGTGTGCAGCTAGT+AGG | 0.471228 | tig0045774:-2007 | Msa1465980:CDS |
GGGACTTGAATTGAATTTGT+GGG | 0.472240 | tig0045774:+3324 | Msa1465980:intergenic |
CATACTTATATCCTTTCAGC+TGG | 0.472251 | tig0045774:-1560 | Msa1465980:CDS |
GCTAGATGTCCTACAGCTCC+AGG | 0.474182 | tig0045774:-1428 | Msa1465980:CDS |
AATGTTAGTGCTGGCTGAGA+AGG | 0.477798 | tig0045774:+3495 | Msa1465980:intergenic |
GCCATCATCAACATAACGGC+TGG | 0.488866 | tig0045774:-2742 | Msa1465980:CDS |
TATTGCCAAAAGGAAGTCCT+TGG | 0.489943 | tig0045774:-1904 | Msa1465980:CDS |
CACCCCTCTGAATGTACACC+TGG | 0.490265 | tig0045774:+1410 | Msa1465980:intergenic |
GCGCTATCAACTCAAATGCT+AGG | 0.494082 | tig0045774:-3129 | Msa1465980:CDS |
TCAACTCAAATGCTAGGGTA+TGG | 0.495718 | tig0045774:-3123 | Msa1465980:CDS |
GCAACAACAAACATAAGAAA+AGG | 0.496723 | tig0045774:-2190 | Msa1465980:CDS |
CAGATCGGTTCCGGCATGAA+AGG | 0.498683 | tig0045774:-2844 | Msa1465980:CDS |
GCTAGAAAATAAGCCGCTAC+TGG | 0.503251 | tig0045774:+3150 | Msa1465980:intergenic |
CTAACAGTGTATATGCAATT+GGG | 0.503303 | tig0045774:-3215 | Msa1465980:CDS |
CAGATCATCGCACTCCCACT+TGG | 0.504498 | tig0045774:-3369 | Msa1465980:CDS |
CAGATGTGGAAGAAGACAAC+GGG | 0.505863 | tig0045774:-2433 | Msa1465980:CDS |
GAAAATAAGCCGCTACTGGA+TGG | 0.506872 | tig0045774:+3154 | Msa1465980:intergenic |
ATGCTAGGGTATGGATGGGC+TGG | 0.507826 | tig0045774:-3114 | Msa1465980:CDS |
AGATCCTGAGCTAGCAAAGA+TGG | 0.512339 | tig0045774:+3236 | Msa1465980:intergenic |
AAGAGACGGCTGATATTGCT+TGG | 0.512449 | tig0045774:+2905 | Msa1465980:intergenic |
CGCTATCAACTCAAATGCTA+GGG | 0.513100 | tig0045774:-3128 | Msa1465980:CDS |
GGAAGTCCTTGGACATGTCC+TGG | 0.514495 | tig0045774:-1893 | Msa1465980:CDS |
AGATTCCCCACCATGGAAGT+TGG | 0.515350 | tig0045774:+2266 | Msa1465980:intergenic |
GATGAATCATTATTGCCAAA+AGG | 0.517998 | tig0045774:-1914 | Msa1465980:CDS |
ACTTTCTCTAGCAATTGCAT+TGG | 0.518521 | tig0045774:-2242 | Msa1465980:CDS |
ATCAGCATGGTACAGGCACT+AGG | 0.520864 | tig0045774:-2082 | Msa1465980:CDS |
TCTAATGGTTATGATGGCCT+TGG | 0.521983 | tig0045774:-2317 | Msa1465980:CDS |
ACTGCACAACAGATCGGTTC+CGG | 0.522183 | tig0045774:-2853 | Msa1465980:CDS |
TCCAGCCGTTATGTTGATGA+TGG | 0.523461 | tig0045774:+2741 | Msa1465980:intergenic |
TGGCCATATCAGCATGGTAC+AGG | 0.524832 | tig0045774:-2089 | Msa1465980:CDS |
GTTGCTTGAATAACACCAAT+TGG | 0.528939 | tig0045774:+2208 | Msa1465980:intergenic |
TCTTTCAAAGAGAATGGCCC+CGG | 0.531037 | tig0045774:+3273 | Msa1465980:intergenic |
ATGGTATTTATGGTCCAACT+TGG | 0.532361 | tig0045774:-1481 | Msa1465980:CDS |
AGAAGTGATTCTCAAAGGGT+TGG | 0.532576 | tig0045774:+3401 | Msa1465980:intergenic |
CGATCATATGGGGAGTTGTA+GGG | 0.533412 | tig0045774:-1847 | Msa1465980:CDS |
TGAGAAGGGTCATCAGTGAT+TGG | 0.533797 | tig0045774:+3510 | Msa1465980:intergenic |
TTGATTCACCTTACATGTGG+TGG | 0.534398 | tig0045774:-3071 | Msa1465980:CDS |
ACCGATCTGTTGTGCAGTGA+TGG | 0.537884 | tig0045774:+2858 | Msa1465980:intergenic |
ATTTATGGTCCAACTTGGTG+GGG | 0.539162 | tig0045774:-1476 | Msa1465980:CDS |
AAACAGAAGTGATTCTCAAA+GGG | 0.539629 | tig0045774:+3397 | Msa1465980:intergenic |
AAAAGAATGTTTACCAAAGA+CGG | 0.539643 | tig0045774:-1821 | Msa1465980:CDS |
TTCAAGTCCCTTTAACAACC+TGG | 0.544897 | tig0045774:-3311 | Msa1465980:CDS |
GAAAACAGCTCCAACTTCCA+TGG | 0.545369 | tig0045774:-2276 | Msa1465980:CDS |
TCACATGTTGTCCTCTTCCA+CGG | 0.547255 | tig0045774:-2469 | Msa1465980:CDS |
TACTTGGGGAATTGTTGGCA+TGG | 0.553992 | tig0045774:-1630 | Msa1465980:CDS |
GAAACAGAAGTGATTCTCAA+AGG | 0.554888 | tig0045774:+3396 | Msa1465980:intergenic |
ATGGCCTTGGTAGCTTGTGA+AGG | 0.560180 | tig0045774:-2304 | Msa1465980:CDS |
ATAGCGACAAACCACCAGTC+AGG | 0.560297 | tig0045774:+2346 | Msa1465980:intergenic |
ATGTTGATGATGGCAAAGCC+AGG | 0.561595 | tig0045774:+2751 | Msa1465980:intergenic |
TACAATGCTTCGATCATATG+GGG | 0.565924 | tig0045774:-1857 | Msa1465980:CDS |
CATGTCCTGAATGTTAGTGC+TGG | 0.567624 | tig0045774:+3486 | Msa1465980:intergenic |
GCTTCAAGACCCCACCAAGT+TGG | 0.568401 | tig0045774:+1467 | Msa1465980:intergenic |
AGCTCCAGGTGTACATTCAG+AGG | 0.569373 | tig0045774:-1414 | Msa1465980:CDS |
TTGAAAGCTACATTAGCAAG+TGG | 0.569517 | tig0045774:+2118 | Msa1465980:intergenic |
GGTTCCGGCATGAAAGGCCT+CGG | 0.572335 | tig0045774:-2838 | Msa1465980:CDS |
ACAGCTCCAACTTCCATGGT+GGG | 0.573418 | tig0045774:-2272 | Msa1465980:CDS |
TTGAGAGAAAGAAGCCACAC+TGG | 0.574063 | tig0045774:+1746 | Msa1465980:intergenic |
ACTATGAACAGGTTCCTGAC+TGG | 0.574537 | tig0045774:-2360 | Msa1465980:CDS |
CTGTAGGACATCTAGCCAAA+GGG | 0.576207 | tig0045774:+1435 | Msa1465980:intergenic |
TTTATAGAAAGTTCAAAGCA+TGG | 0.576687 | tig0045774:-1592 | Msa1465980:CDS |
GAATGTACACCTGGAGCTGT+AGG | 0.576798 | tig0045774:+1419 | Msa1465980:intergenic |
AATACCGAGGCCTTTCATGC+CGG | 0.579034 | tig0045774:+2834 | Msa1465980:intergenic |
TCTCACACATTTGACTCTAC+CGG | 0.584032 | tig0045774:-2637 | Msa1465980:CDS |
CTTTGCCATCATCAACATAA+CGG | 0.587686 | tig0045774:-2746 | Msa1465980:CDS |
CAGGTGCAAGTAGACCAATA+AGG | 0.588260 | tig0045774:+1771 | Msa1465980:intergenic |
GCCACCATGCTGTTCCAAAG+TGG | 0.589605 | tig0045774:+1963 | Msa1465980:intergenic |
ATGTAATTCACAGATCTCAC+TGG | 0.593502 | tig0045774:+1653 | Msa1465980:intergenic |
TTGAATAACACCAATTGGCA+AGG | 0.594561 | tig0045774:+2213 | Msa1465980:intergenic |
TAGAAAGTTCAAAGCATGGT+GGG | 0.595599 | tig0045774:-1588 | Msa1465980:CDS |
GCTCCAGGTGTACATTCAGA+GGG | 0.599902 | tig0045774:-1413 | Msa1465980:CDS |
AGTAACGTTGTAAGTAGCAC+CGG | 0.600219 | tig0045774:+2618 | Msa1465980:intergenic |
TCCATCACTGCACAACAGAT+CGG | 0.604088 | tig0045774:-2859 | Msa1465980:CDS |
GCTGTAGGACATCTAGCCAA+AGG | 0.606272 | tig0045774:+1434 | Msa1465980:intergenic |
TCAAATGCTAGGGTATGGAT+GGG | 0.606804 | tig0045774:-3118 | Msa1465980:CDS |
GCAAAGCCAGGAACAGCCAA+AGG | 0.611885 | tig0045774:+2763 | Msa1465980:intergenic |
TCAGCATGGTACAGGCACTA+GGG | 0.613246 | tig0045774:-2081 | Msa1465980:CDS |
TCCACTTTGGAACAGCATGG+TGG | 0.617331 | tig0045774:-1964 | Msa1465980:CDS |
GAAAGTAAGATTCCCCACCA+TGG | 0.618275 | tig0045774:+2259 | Msa1465980:intergenic |
AACAGCTCCAACTTCCATGG+TGG | 0.618847 | tig0045774:-2273 | Msa1465980:CDS |
CAGCATCTAAACCAGCTGAA+AGG | 0.619611 | tig0045774:+1549 | Msa1465980:intergenic |
CAGCCATAAGCTTCCCAAGT+GGG | 0.619958 | tig0045774:+3355 | Msa1465980:intergenic |
ATGTTAGTGCTGGCTGAGAA+GGG | 0.621581 | tig0045774:+3496 | Msa1465980:intergenic |
TTGTTGATTCACCTTACATG+TGG | 0.623879 | tig0045774:-3074 | Msa1465980:CDS |
TACTTGCACCTGTTCCAGTG+TGG | 0.626498 | tig0045774:-1760 | Msa1465980:CDS |
AAAGCCTTCACAAGCTACCA+AGG | 0.627712 | tig0045774:+2300 | Msa1465980:intergenic |
TAATTCACAGATCTCACTGG+TGG | 0.631278 | tig0045774:+1656 | Msa1465980:intergenic |
AATCAAACAAACAAAAGAGA+CGG | 0.633388 | tig0045774:+2891 | Msa1465980:intergenic |
CTGTCCACTTTGGAACAGCA+TGG | 0.634229 | tig0045774:-1967 | Msa1465980:CDS |
CAGCACTAACATTCAGGACA+TGG | 0.635014 | tig0045774:-3485 | Msa1465980:CDS |
ATGAACAGGTTCCTGACTGG+TGG | 0.636233 | tig0045774:-2357 | Msa1465980:CDS |
AAAACTGGTTCACAAGTGCA+AGG | 0.636917 | tig0045774:+3436 | Msa1465980:intergenic |
AGATCATCGCACTCCCACTT+GGG | 0.638889 | tig0045774:-3368 | Msa1465980:CDS |
TAAATAGAGACACTTGCACA+AGG | 0.641322 | tig0045774:+3040 | Msa1465980:intergenic |
ATAGTCCCATTGAGCAAGTG+AGG | 0.642670 | tig0045774:-3542 | Msa1465980:CDS |
AACATATGGCCATATCAGCA+TGG | 0.644517 | tig0045774:-2095 | Msa1465980:CDS |
TCATCACCAGGACATGTCCA+AGG | 0.650081 | tig0045774:+1887 | Msa1465980:intergenic |
ACATGTAAGGTGAATCAACA+AGG | 0.653431 | tig0045774:+3076 | Msa1465980:intergenic |
GAAGCTGAGATATCAAGCAG+TGG | 0.654614 | tig0045774:-3621 | Msa1465980:CDS |
CAGCTCCAACTTCCATGGTG+GGG | 0.658945 | tig0045774:-2271 | Msa1465980:CDS |
CAAAGACATCCATCCAGTAG+CGG | 0.664629 | tig0045774:-3163 | Msa1465980:CDS |
TTGTAAAATACATCATCACC+AGG | 0.668122 | tig0045774:+1875 | Msa1465980:intergenic |
TCTGTGAATTACATTACTTG+GGG | 0.669555 | tig0045774:-1644 | Msa1465980:CDS |
ATAGAAAGTTCAAAGCATGG+TGG | 0.698834 | tig0045774:-1589 | Msa1465980:CDS |
AATGTGTGAGAGCTAATGAG+TGG | 0.705358 | tig0045774:+2649 | Msa1465980:intergenic |
TCAGATGTGGAAGAAGACAA+CGG | 0.708573 | tig0045774:-2434 | Msa1465980:CDS |
GGCCAAATGAACCAATACCG+AGG | 0.714839 | tig0045774:+2821 | Msa1465980:intergenic |
GGTTCGTTAACACATCAACT+CGG | 0.727649 | tig0045774:-2412 | Msa1465980:CDS |
CTCCAGGTGTACATTCAGAG+GGG | 0.738016 | tig0045774:-1412 | Msa1465980:CDS |
GCAGCCATAAGCTTCCCAAG+TGG | 0.750675 | tig0045774:+3354 | Msa1465970:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CATTTCATGAAAAAGAAAAA+AGG | - | tig0045774:2004-2023 | Msa1465980:CDS | 20.0% |
!! | ATCATATAAATTGTTCCAAT+AGG | + | tig0045774:2337-2356 | Msa1465980:intergenic | 20.0% |
!!! | AATATCAATGTCAAAAGTTT+TGG | + | tig0045774:2439-2458 | Msa1465980:intergenic | 20.0% |
!! | ATAAAGTAGTAAACCTATAA+AGG | + | tig0045774:3501-3520 | Msa1465980:intergenic | 20.0% |
!! | CATTTCATGAAAAAGAAAAA+AGG | - | tig0045774:2004-2023 | Msa1465980:CDS | 20.0% |
!! | ATCATATAAATTGTTCCAAT+AGG | + | tig0045774:2337-2356 | Msa1465980:intergenic | 20.0% |
!!! | AATATCAATGTCAAAAGTTT+TGG | + | tig0045774:2439-2458 | Msa1465980:intergenic | 20.0% |
!! | ATAAAGTAGTAAACCTATAA+AGG | + | tig0045774:3501-3520 | Msa1465980:intergenic | 20.0% |
! | AATCAAACAAACAAAAGAGA+CGG | + | tig0045774:2130-2149 | Msa1465980:intergenic | 25.0% |
!!! | TCTCTTTTGTTTGTTTGATT+TGG | - | tig0045774:2130-2149 | Msa1465980:CDS | 25.0% |
! | AATGTAGCTTTCAAAACATA+TGG | - | tig0045774:2909-2928 | Msa1465980:CDS | 25.0% |
! | TTTCTTGAAGACTTCAAATT+AGG | - | tig0045774:2960-2979 | Msa1465980:CDS | 25.0% |
!! | TTGGTGGAATTTTCATATAA+TGG | + | tig0045774:2986-3005 | Msa1465980:intergenic | 25.0% |
!! | TCTTTGGTAAACATTCTTTT+TGG | + | tig0045774:3197-3216 | Msa1465980:intergenic | 25.0% |
! | AAAAGAATGTTTACCAAAGA+CGG | - | tig0045774:3197-3216 | Msa1465980:CDS | 25.0% |
!!! | ATGAATTGGTTTTTCCTTAT+TGG | - | tig0045774:3233-3252 | Msa1465980:CDS | 25.0% |
! | ATCTGTGAATTACATTACTT+GGG | - | tig0045774:3373-3392 | Msa1465980:CDS | 25.0% |
! | TTTATAGAAAGTTCAAAGCA+TGG | - | tig0045774:3426-3445 | Msa1465980:CDS | 25.0% |
!! | TATTTTGCTCTTCAATCTTA+TGG | - | tig0045774:3518-3537 | Msa1465980:CDS | 25.0% |
! | CTTCAATCTTATGGTATTTA+TGG | - | tig0045774:3527-3546 | Msa1465980:CDS | 25.0% |
! | AATCAAACAAACAAAAGAGA+CGG | + | tig0045774:2130-2149 | Msa1465980:intergenic | 25.0% |
!!! | TCTCTTTTGTTTGTTTGATT+TGG | - | tig0045774:2130-2149 | Msa1465980:CDS | 25.0% |
! | AATGTAGCTTTCAAAACATA+TGG | - | tig0045774:2909-2928 | Msa1465980:CDS | 25.0% |
! | TTTCTTGAAGACTTCAAATT+AGG | - | tig0045774:2960-2979 | Msa1465980:CDS | 25.0% |
!! | TTGGTGGAATTTTCATATAA+TGG | + | tig0045774:2986-3005 | Msa1465980:intergenic | 25.0% |
!! | TCTTTGGTAAACATTCTTTT+TGG | + | tig0045774:3197-3216 | Msa1465980:intergenic | 25.0% |
! | AAAAGAATGTTTACCAAAGA+CGG | - | tig0045774:3197-3216 | Msa1465980:CDS | 25.0% |
!!! | ATGAATTGGTTTTTCCTTAT+TGG | - | tig0045774:3233-3252 | Msa1465980:CDS | 25.0% |
! | ATCTGTGAATTACATTACTT+GGG | - | tig0045774:3373-3392 | Msa1465980:CDS | 25.0% |
! | TTTATAGAAAGTTCAAAGCA+TGG | - | tig0045774:3426-3445 | Msa1465980:CDS | 25.0% |
!! | TATTTTGCTCTTCAATCTTA+TGG | - | tig0045774:3518-3537 | Msa1465980:CDS | 25.0% |
! | CTTCAATCTTATGGTATTTA+TGG | - | tig0045774:3527-3546 | Msa1465980:CDS | 25.0% |
AAACAGAAGTGATTCTCAAA+GGG | + | tig0045774:1624-1643 | Msa1465980:intergenic | 30.0% | |
AAAAAGACCAGGTTGTTAAA+GGG | + | tig0045774:1717-1736 | Msa1465980:intergenic | 30.0% | |
TCTAACAGTGTATATGCAAT+TGG | - | tig0045774:1802-1821 | Msa1465980:CDS | 30.0% | |
CTAACAGTGTATATGCAATT+GGG | - | tig0045774:1803-1822 | Msa1465980:CDS | 30.0% | |
GAAAAAGAAAAAAGGCCTAA+AGG | - | tig0045774:2012-2031 | Msa1465980:CDS | 30.0% | |
! | TTTTGATACCAATTGCCTAT+TGG | - | tig0045774:2319-2338 | Msa1465980:CDS | 30.0% |
AAATTGTTCCAATAGGCAAT+TGG | + | tig0045774:2330-2349 | Msa1465980:intergenic | 30.0% | |
GAAAAATGATACTTCAGATG+TGG | - | tig0045774:2571-2590 | Msa1465980:CDS | 30.0% | |
CATGAAGAAAAACTATGAAC+AGG | - | tig0045774:2647-2666 | Msa1465980:CDS | 30.0% | |
TCTGATTCTAATGGTTATGA+TGG | - | tig0045774:2695-2714 | Msa1465980:CDS | 30.0% | |
GCAACAACAAACATAAGAAA+AGG | - | tig0045774:2828-2847 | Msa1465980:CDS | 30.0% | |
GATGAATCATTATTGCCAAA+AGG | - | tig0045774:3104-3123 | Msa1465980:CDS | 30.0% | |
TTGTAAAATACATCATCACC+AGG | + | tig0045774:3146-3165 | Msa1465980:intergenic | 30.0% | |
TTTACAATGCTTCGATCATA+TGG | - | tig0045774:3159-3178 | Msa1465980:CDS | 30.0% | |
TTACAATGCTTCGATCATAT+GGG | - | tig0045774:3160-3179 | Msa1465980:CDS | 30.0% | |
TCAAATTTCCTAACCAAAAG+TGG | - | tig0045774:3291-3310 | Msa1465980:CDS | 30.0% | |
!! | TAATGAGTTGAATCCACTTT+TGG | + | tig0045774:3307-3326 | Msa1465980:intergenic | 30.0% |
GATCTGTGAATTACATTACT+TGG | - | tig0045774:3372-3391 | Msa1465980:CDS | 30.0% | |
TCTGTGAATTACATTACTTG+GGG | - | tig0045774:3374-3393 | Msa1465980:CDS | 30.0% | |
AAACAGAAGTGATTCTCAAA+GGG | + | tig0045774:1624-1643 | Msa1465980:intergenic | 30.0% | |
AAAAAGACCAGGTTGTTAAA+GGG | + | tig0045774:1717-1736 | Msa1465980:intergenic | 30.0% | |
TCTAACAGTGTATATGCAAT+TGG | - | tig0045774:1802-1821 | Msa1465980:CDS | 30.0% | |
CTAACAGTGTATATGCAATT+GGG | - | tig0045774:1803-1822 | Msa1465980:CDS | 30.0% | |
GAAAAAGAAAAAAGGCCTAA+AGG | - | tig0045774:2012-2031 | Msa1465980:CDS | 30.0% | |
! | TTTTGATACCAATTGCCTAT+TGG | - | tig0045774:2319-2338 | Msa1465980:CDS | 30.0% |
AAATTGTTCCAATAGGCAAT+TGG | + | tig0045774:2330-2349 | Msa1465980:intergenic | 30.0% | |
GAAAAATGATACTTCAGATG+TGG | - | tig0045774:2571-2590 | Msa1465980:CDS | 30.0% | |
CATGAAGAAAAACTATGAAC+AGG | - | tig0045774:2647-2666 | Msa1465980:CDS | 30.0% | |
TCTGATTCTAATGGTTATGA+TGG | - | tig0045774:2695-2714 | Msa1465980:CDS | 30.0% | |
GCAACAACAAACATAAGAAA+AGG | - | tig0045774:2828-2847 | Msa1465980:CDS | 30.0% | |
GATGAATCATTATTGCCAAA+AGG | - | tig0045774:3104-3123 | Msa1465980:CDS | 30.0% | |
TTGTAAAATACATCATCACC+AGG | + | tig0045774:3146-3165 | Msa1465980:intergenic | 30.0% | |
TTTACAATGCTTCGATCATA+TGG | - | tig0045774:3159-3178 | Msa1465980:CDS | 30.0% | |
TTACAATGCTTCGATCATAT+GGG | - | tig0045774:3160-3179 | Msa1465980:CDS | 30.0% | |
TCAAATTTCCTAACCAAAAG+TGG | - | tig0045774:3291-3310 | Msa1465980:CDS | 30.0% | |
!! | TAATGAGTTGAATCCACTTT+TGG | + | tig0045774:3307-3326 | Msa1465980:intergenic | 30.0% |
GATCTGTGAATTACATTACT+TGG | - | tig0045774:3372-3391 | Msa1465980:CDS | 30.0% | |
TCTGTGAATTACATTACTTG+GGG | - | tig0045774:3374-3393 | Msa1465980:CDS | 30.0% | |
GAAACAGAAGTGATTCTCAA+AGG | + | tig0045774:1625-1644 | Msa1465980:intergenic | 35.0% | |
GGGACTTGAATTGAATTTGT+GGG | + | tig0045774:1697-1716 | Msa1465980:intergenic | 35.0% | |
AGGGACTTGAATTGAATTTG+TGG | + | tig0045774:1698-1717 | Msa1465980:intergenic | 35.0% | |
GAAAAAGACCAGGTTGTTAA+AGG | + | tig0045774:1718-1737 | Msa1465980:intergenic | 35.0% | |
!! | CTGGTCTTTTTCATTGAATC+CGG | - | tig0045774:1726-1745 | Msa1465980:CDS | 35.0% |
!! | TGGTCTTTTTCATTGAATCC+GGG | - | tig0045774:1727-1746 | Msa1465980:CDS | 35.0% |
GCATGTTCTTTCAAAGAGAA+TGG | + | tig0045774:1754-1773 | Msa1465980:intergenic | 35.0% | |
TGGGATAGTCACAATTGTTA+AGG | - | tig0045774:1822-1841 | Msa1465980:CDS | 35.0% | |
ACATGTAAGGTGAATCAACA+AGG | + | tig0045774:1945-1964 | Msa1465980:intergenic | 35.0% | |
!! | TTGTTGATTCACCTTACATG+TGG | - | tig0045774:1944-1963 | Msa1465980:CDS | 35.0% |
TAAATAGAGACACTTGCACA+AGG | + | tig0045774:1981-2000 | Msa1465980:intergenic | 35.0% | |
TTGTGCAAGTGTCTCTATTT+AGG | - | tig0045774:1980-1999 | Msa1465980:CDS | 35.0% | |
TGTGCAAGTGTCTCTATTTA+GGG | - | tig0045774:1981-2000 | Msa1465980:CDS | 35.0% | |
AAAGAAAAAAGGCCTAAAGG+AGG | - | tig0045774:2015-2034 | Msa1465980:CDS | 35.0% | |
CTTTGCCATCATCAACATAA+CGG | - | tig0045774:2272-2291 | Msa1465980:CDS | 35.0% | |
!! | TCTGAAGTATCATTTTTCCG+TGG | + | tig0045774:2569-2588 | Msa1465980:intergenic | 35.0% |
TGTCGCTATTCTGATTCTAA+TGG | - | tig0045774:2686-2705 | Msa1465980:CDS | 35.0% | |
ACTTTCTCTAGCAATTGCAT+TGG | - | tig0045774:2776-2795 | Msa1465980:CDS | 35.0% | |
TTGAATAACACCAATTGGCA+AGG | + | tig0045774:2808-2827 | Msa1465980:intergenic | 35.0% | |
GTTGCTTGAATAACACCAAT+TGG | + | tig0045774:2813-2832 | Msa1465980:intergenic | 35.0% | |
TCTCAATGTGATCACAGAAT+TGG | - | tig0045774:2851-2870 | Msa1465980:CDS | 35.0% | |
! | GTGATCACAGAATTGGTAAT+TGG | - | tig0045774:2858-2877 | Msa1465980:CDS | 35.0% |
! | GTAATTGGTTTCATCTATCC+AGG | - | tig0045774:2873-2892 | Msa1465980:CDS | 35.0% |
TTGAAAGCTACATTAGCAAG+TGG | + | tig0045774:2903-2922 | Msa1465980:intergenic | 35.0% | |
!!! | ACACTGAACATTGATTTTGG+TGG | + | tig0045774:3002-3021 | Msa1465980:intergenic | 35.0% |
!!! | TGCACACTGAACATTGATTT+TGG | + | tig0045774:3005-3024 | Msa1465980:intergenic | 35.0% |
TACAATGCTTCGATCATATG+GGG | - | tig0045774:3161-3180 | Msa1465980:CDS | 35.0% | |
GAGTTTATCCTGAGATGAAT+TGG | - | tig0045774:3219-3238 | Msa1465980:CDS | 35.0% | |
AGGAAAAACCAATTCATCTC+AGG | + | tig0045774:3230-3249 | Msa1465980:intergenic | 35.0% | |
!! | AGTTGAATCCACTTTTGGTT+AGG | + | tig0045774:3302-3321 | Msa1465980:intergenic | 35.0% |
ATGTAATTCACAGATCTCAC+TGG | + | tig0045774:3368-3387 | Msa1465980:intergenic | 35.0% | |
TACATTACTTGGGGAATTGT+TGG | - | tig0045774:3383-3402 | Msa1465980:CDS | 35.0% | |
ATAGAAAGTTCAAAGCATGG+TGG | - | tig0045774:3429-3448 | Msa1465980:CDS | 35.0% | |
TAGAAAGTTCAAAGCATGGT+GGG | - | tig0045774:3430-3449 | Msa1465980:CDS | 35.0% | |
CATACTTATATCCTTTCAGC+TGG | - | tig0045774:3458-3477 | Msa1465980:CDS | 35.0% | |
ATGGTATTTATGGTCCAACT+TGG | - | tig0045774:3537-3556 | Msa1465980:CDS | 35.0% | |
TATTTATGGTCCAACTTGGT+GGG | - | tig0045774:3541-3560 | Msa1465980:CDS | 35.0% | |
GAAACAGAAGTGATTCTCAA+AGG | + | tig0045774:1625-1644 | Msa1465980:intergenic | 35.0% | |
GGGACTTGAATTGAATTTGT+GGG | + | tig0045774:1697-1716 | Msa1465980:intergenic | 35.0% | |
AGGGACTTGAATTGAATTTG+TGG | + | tig0045774:1698-1717 | Msa1465980:intergenic | 35.0% | |
GAAAAAGACCAGGTTGTTAA+AGG | + | tig0045774:1718-1737 | Msa1465980:intergenic | 35.0% | |
!! | CTGGTCTTTTTCATTGAATC+CGG | - | tig0045774:1726-1745 | Msa1465980:CDS | 35.0% |
!! | TGGTCTTTTTCATTGAATCC+GGG | - | tig0045774:1727-1746 | Msa1465980:CDS | 35.0% |
GCATGTTCTTTCAAAGAGAA+TGG | + | tig0045774:1754-1773 | Msa1465980:intergenic | 35.0% | |
TGGGATAGTCACAATTGTTA+AGG | - | tig0045774:1822-1841 | Msa1465980:CDS | 35.0% | |
ACATGTAAGGTGAATCAACA+AGG | + | tig0045774:1945-1964 | Msa1465980:intergenic | 35.0% | |
!! | TTGTTGATTCACCTTACATG+TGG | - | tig0045774:1944-1963 | Msa1465980:CDS | 35.0% |
TAAATAGAGACACTTGCACA+AGG | + | tig0045774:1981-2000 | Msa1465980:intergenic | 35.0% | |
TTGTGCAAGTGTCTCTATTT+AGG | - | tig0045774:1980-1999 | Msa1465980:CDS | 35.0% | |
TGTGCAAGTGTCTCTATTTA+GGG | - | tig0045774:1981-2000 | Msa1465980:CDS | 35.0% | |
AAAGAAAAAAGGCCTAAAGG+AGG | - | tig0045774:2015-2034 | Msa1465980:CDS | 35.0% | |
CTTTGCCATCATCAACATAA+CGG | - | tig0045774:2272-2291 | Msa1465980:CDS | 35.0% | |
!! | TCTGAAGTATCATTTTTCCG+TGG | + | tig0045774:2569-2588 | Msa1465980:intergenic | 35.0% |
TGTCGCTATTCTGATTCTAA+TGG | - | tig0045774:2686-2705 | Msa1465980:CDS | 35.0% | |
ACTTTCTCTAGCAATTGCAT+TGG | - | tig0045774:2776-2795 | Msa1465980:CDS | 35.0% | |
TTGAATAACACCAATTGGCA+AGG | + | tig0045774:2808-2827 | Msa1465980:intergenic | 35.0% | |
GTTGCTTGAATAACACCAAT+TGG | + | tig0045774:2813-2832 | Msa1465980:intergenic | 35.0% | |
TCTCAATGTGATCACAGAAT+TGG | - | tig0045774:2851-2870 | Msa1465980:CDS | 35.0% | |
! | GTGATCACAGAATTGGTAAT+TGG | - | tig0045774:2858-2877 | Msa1465980:CDS | 35.0% |
! | GTAATTGGTTTCATCTATCC+AGG | - | tig0045774:2873-2892 | Msa1465980:CDS | 35.0% |
TTGAAAGCTACATTAGCAAG+TGG | + | tig0045774:2903-2922 | Msa1465980:intergenic | 35.0% | |
!!! | ACACTGAACATTGATTTTGG+TGG | + | tig0045774:3002-3021 | Msa1465980:intergenic | 35.0% |
!!! | TGCACACTGAACATTGATTT+TGG | + | tig0045774:3005-3024 | Msa1465980:intergenic | 35.0% |
TACAATGCTTCGATCATATG+GGG | - | tig0045774:3161-3180 | Msa1465980:CDS | 35.0% | |
GAGTTTATCCTGAGATGAAT+TGG | - | tig0045774:3219-3238 | Msa1465980:CDS | 35.0% | |
AGGAAAAACCAATTCATCTC+AGG | + | tig0045774:3230-3249 | Msa1465980:intergenic | 35.0% | |
!! | AGTTGAATCCACTTTTGGTT+AGG | + | tig0045774:3302-3321 | Msa1465980:intergenic | 35.0% |
ATGTAATTCACAGATCTCAC+TGG | + | tig0045774:3368-3387 | Msa1465980:intergenic | 35.0% | |
TACATTACTTGGGGAATTGT+TGG | - | tig0045774:3383-3402 | Msa1465980:CDS | 35.0% | |
ATAGAAAGTTCAAAGCATGG+TGG | - | tig0045774:3429-3448 | Msa1465980:CDS | 35.0% | |
TAGAAAGTTCAAAGCATGGT+GGG | - | tig0045774:3430-3449 | Msa1465980:CDS | 35.0% | |
CATACTTATATCCTTTCAGC+TGG | - | tig0045774:3458-3477 | Msa1465980:CDS | 35.0% | |
ATGGTATTTATGGTCCAACT+TGG | - | tig0045774:3537-3556 | Msa1465980:CDS | 35.0% | |
TATTTATGGTCCAACTTGGT+GGG | - | tig0045774:3541-3560 | Msa1465980:CDS | 35.0% | |
! | CAGTGGAGTGTCTCAAAATA+GGG | - | tig0045774:1414-1433 | Msa1465980:CDS | 40.0% |
GTCTCAAAATAGGGTCTTAG+AGG | - | tig0045774:1423-1442 | Msa1465980:CDS | 40.0% | |
GTTAACCTCACTTGCTCAAT+GGG | + | tig0045774:1484-1503 | Msa1465980:intergenic | 40.0% | |
TGTTAACCTCACTTGCTCAA+TGG | + | tig0045774:1485-1504 | Msa1465980:intergenic | 40.0% | |
ACATTCAGGACATGGATTCT+AGG | - | tig0045774:1541-1560 | Msa1465980:CDS | 40.0% | |
! | AAAACTGGTTCACAAGTGCA+AGG | + | tig0045774:1585-1604 | Msa1465980:intergenic | 40.0% |
! | GCACTTGTGAACCAGTTTTT+AGG | - | tig0045774:1586-1605 | Msa1465980:CDS | 40.0% |
! | TGGTTCTGTAGCCTAAAAAC+TGG | + | tig0045774:1600-1619 | Msa1465980:intergenic | 40.0% |
AGAAGTGATTCTCAAAGGGT+TGG | + | tig0045774:1620-1639 | Msa1465980:intergenic | 40.0% | |
TTCAAGTCCCTTTAACAACC+TGG | - | tig0045774:1707-1726 | Msa1465980:CDS | 40.0% | |
CGGATTCAATGAAAAAGACC+AGG | + | tig0045774:1728-1747 | Msa1465980:intergenic | 40.0% | |
!! | GGTCTTTTTCATTGAATCCG+GGG | - | tig0045774:1728-1747 | Msa1465980:CDS | 40.0% |
CGCTATCAACTCAAATGCTA+GGG | - | tig0045774:1890-1909 | Msa1465980:CDS | 40.0% | |
TCAACTCAAATGCTAGGGTA+TGG | - | tig0045774:1895-1914 | Msa1465980:CDS | 40.0% | |
TCAAATGCTAGGGTATGGAT+GGG | - | tig0045774:1900-1919 | Msa1465980:CDS | 40.0% | |
TTGATTCACCTTACATGTGG+TGG | - | tig0045774:1947-1966 | Msa1465980:CDS | 40.0% | |
TTCGCATATTACATCGTTCC+TGG | - | tig0045774:2081-2100 | Msa1465980:CDS | 40.0% | |
ATTGCTTGGAAAAAGTAGCC+AGG | + | tig0045774:2102-2121 | Msa1465980:intergenic | 40.0% | |
!! | TTGGTTCATTTGGCCTTGAT+TGG | - | tig0045774:2205-2224 | Msa1465980:CDS | 40.0% |
AATGTGTGAGAGCTAATGAG+TGG | + | tig0045774:2372-2391 | Msa1465980:intergenic | 40.0% | |
TCTCACACATTTGACTCTAC+CGG | - | tig0045774:2381-2400 | Msa1465980:CDS | 40.0% | |
AGTAACGTTGTAAGTAGCAC+CGG | + | tig0045774:2403-2422 | Msa1465980:intergenic | 40.0% | |
!! | GTATCATTTTTCCGTGGAAG+AGG | + | tig0045774:2563-2582 | Msa1465980:intergenic | 40.0% |
TCAGATGTGGAAGAAGACAA+CGG | - | tig0045774:2584-2603 | Msa1465980:CDS | 40.0% | |
GGTTCGTTAACACATCAACT+CGG | - | tig0045774:2606-2625 | Msa1465980:CDS | 40.0% | |
TCTAATGGTTATGATGGCCT+TGG | - | tig0045774:2701-2720 | Msa1465980:CDS | 40.0% | |
!! | TTGGTTTTCACCTTGCCAAT+TGG | - | tig0045774:2795-2814 | Msa1465980:CDS | 40.0% |
AACATATGGCCATATCAGCA+TGG | - | tig0045774:2923-2942 | Msa1465980:CDS | 40.0% | |
GTTTCTTCATCTGTCCACTT+TGG | - | tig0045774:3041-3060 | Msa1465980:CDS | 40.0% | |
TATTGCCAAAAGGAAGTCCT+TGG | - | tig0045774:3114-3133 | Msa1465980:CDS | 40.0% | |
AACATTCCTATTATCGCTGC+AGG | - | tig0045774:3326-3345 | Msa1465980:CDS | 40.0% | |
TAATTCACAGATCTCACTGG+TGG | + | tig0045774:3365-3384 | Msa1465980:intergenic | 40.0% | |
GTATTTATGGTCCAACTTGG+TGG | - | tig0045774:3540-3559 | Msa1465980:CDS | 40.0% | |
! | ATTTATGGTCCAACTTGGTG+GGG | - | tig0045774:3542-3561 | Msa1465980:CDS | 40.0% |
! | CAGTGGAGTGTCTCAAAATA+GGG | - | tig0045774:1414-1433 | Msa1465980:CDS | 40.0% |
GTCTCAAAATAGGGTCTTAG+AGG | - | tig0045774:1423-1442 | Msa1465980:CDS | 40.0% | |
GTTAACCTCACTTGCTCAAT+GGG | + | tig0045774:1484-1503 | Msa1465980:intergenic | 40.0% | |
TGTTAACCTCACTTGCTCAA+TGG | + | tig0045774:1485-1504 | Msa1465980:intergenic | 40.0% | |
ACATTCAGGACATGGATTCT+AGG | - | tig0045774:1541-1560 | Msa1465980:CDS | 40.0% | |
! | AAAACTGGTTCACAAGTGCA+AGG | + | tig0045774:1585-1604 | Msa1465980:intergenic | 40.0% |
! | GCACTTGTGAACCAGTTTTT+AGG | - | tig0045774:1586-1605 | Msa1465980:CDS | 40.0% |
! | TGGTTCTGTAGCCTAAAAAC+TGG | + | tig0045774:1600-1619 | Msa1465980:intergenic | 40.0% |
AGAAGTGATTCTCAAAGGGT+TGG | + | tig0045774:1620-1639 | Msa1465980:intergenic | 40.0% | |
TTCAAGTCCCTTTAACAACC+TGG | - | tig0045774:1707-1726 | Msa1465980:CDS | 40.0% | |
CGGATTCAATGAAAAAGACC+AGG | + | tig0045774:1728-1747 | Msa1465980:intergenic | 40.0% | |
!! | GGTCTTTTTCATTGAATCCG+GGG | - | tig0045774:1728-1747 | Msa1465980:CDS | 40.0% |
CGCTATCAACTCAAATGCTA+GGG | - | tig0045774:1890-1909 | Msa1465980:CDS | 40.0% | |
TCAACTCAAATGCTAGGGTA+TGG | - | tig0045774:1895-1914 | Msa1465980:CDS | 40.0% | |
TCAAATGCTAGGGTATGGAT+GGG | - | tig0045774:1900-1919 | Msa1465980:CDS | 40.0% | |
TTGATTCACCTTACATGTGG+TGG | - | tig0045774:1947-1966 | Msa1465980:CDS | 40.0% | |
TTCGCATATTACATCGTTCC+TGG | - | tig0045774:2081-2100 | Msa1465980:CDS | 40.0% | |
ATTGCTTGGAAAAAGTAGCC+AGG | + | tig0045774:2102-2121 | Msa1465980:intergenic | 40.0% | |
!! | TTGGTTCATTTGGCCTTGAT+TGG | - | tig0045774:2205-2224 | Msa1465980:CDS | 40.0% |
AATGTGTGAGAGCTAATGAG+TGG | + | tig0045774:2372-2391 | Msa1465980:intergenic | 40.0% | |
TCTCACACATTTGACTCTAC+CGG | - | tig0045774:2381-2400 | Msa1465980:CDS | 40.0% | |
AGTAACGTTGTAAGTAGCAC+CGG | + | tig0045774:2403-2422 | Msa1465980:intergenic | 40.0% | |
!! | GTATCATTTTTCCGTGGAAG+AGG | + | tig0045774:2563-2582 | Msa1465980:intergenic | 40.0% |
TCAGATGTGGAAGAAGACAA+CGG | - | tig0045774:2584-2603 | Msa1465980:CDS | 40.0% | |
GGTTCGTTAACACATCAACT+CGG | - | tig0045774:2606-2625 | Msa1465980:CDS | 40.0% | |
TCTAATGGTTATGATGGCCT+TGG | - | tig0045774:2701-2720 | Msa1465980:CDS | 40.0% | |
!! | TTGGTTTTCACCTTGCCAAT+TGG | - | tig0045774:2795-2814 | Msa1465980:CDS | 40.0% |
AACATATGGCCATATCAGCA+TGG | - | tig0045774:2923-2942 | Msa1465980:CDS | 40.0% | |
GTTTCTTCATCTGTCCACTT+TGG | - | tig0045774:3041-3060 | Msa1465980:CDS | 40.0% | |
TATTGCCAAAAGGAAGTCCT+TGG | - | tig0045774:3114-3133 | Msa1465980:CDS | 40.0% | |
AACATTCCTATTATCGCTGC+AGG | - | tig0045774:3326-3345 | Msa1465980:CDS | 40.0% | |
TAATTCACAGATCTCACTGG+TGG | + | tig0045774:3365-3384 | Msa1465980:intergenic | 40.0% | |
GTATTTATGGTCCAACTTGG+TGG | - | tig0045774:3540-3559 | Msa1465980:CDS | 40.0% | |
! | ATTTATGGTCCAACTTGGTG+GGG | - | tig0045774:3542-3561 | Msa1465980:CDS | 40.0% |
GAAGCTGAGATATCAAGCAG+TGG | - | tig0045774:1397-1416 | Msa1465980:CDS | 45.0% | |
! | GCAGTGGAGTGTCTCAAAAT+AGG | - | tig0045774:1413-1432 | Msa1465980:CDS | 45.0% |
ATAGTCCCATTGAGCAAGTG+AGG | - | tig0045774:1476-1495 | Msa1465980:CDS | 45.0% | |
TGAGAAGGGTCATCAGTGAT+TGG | + | tig0045774:1511-1530 | Msa1465980:intergenic | 45.0% | |
!! | ATGTTAGTGCTGGCTGAGAA+GGG | + | tig0045774:1525-1544 | Msa1465980:intergenic | 45.0% |
!! | AATGTTAGTGCTGGCTGAGA+AGG | + | tig0045774:1526-1545 | Msa1465980:intergenic | 45.0% |
CATGTCCTGAATGTTAGTGC+TGG | + | tig0045774:1535-1554 | Msa1465980:intergenic | 45.0% | |
CAGCACTAACATTCAGGACA+TGG | - | tig0045774:1533-1552 | Msa1465980:CDS | 45.0% | |
TCTTTCAAAGAGAATGGCCC+CGG | + | tig0045774:1748-1767 | Msa1465980:intergenic | 45.0% | |
ATCACCATCTTTGCTAGCTC+AGG | - | tig0045774:1778-1797 | Msa1465980:CDS | 45.0% | |
AGATCCTGAGCTAGCAAAGA+TGG | + | tig0045774:1785-1804 | Msa1465980:intergenic | 45.0% | |
CAAAGACATCCATCCAGTAG+CGG | - | tig0045774:1855-1874 | Msa1465980:CDS | 45.0% | |
GAAAATAAGCCGCTACTGGA+TGG | + | tig0045774:1867-1886 | Msa1465980:intergenic | 45.0% | |
GCTAGAAAATAAGCCGCTAC+TGG | + | tig0045774:1871-1890 | Msa1465980:intergenic | 45.0% | |
GCGCTATCAACTCAAATGCT+AGG | - | tig0045774:1889-1908 | Msa1465980:CDS | 45.0% | |
CTCAAATGCTAGGGTATGGA+TGG | - | tig0045774:1899-1918 | Msa1465980:CDS | 45.0% | |
!!! | GATGGGCTGGTATTTTCAGA+AGG | - | tig0045774:1917-1936 | Msa1465980:CDS | 45.0% |
!! | TTTTCAGGCCACCACATGTA+AGG | + | tig0045774:1958-1977 | Msa1465980:intergenic | 45.0% |
! | GACACTTGCACAAGGTTTTC+AGG | + | tig0045774:1973-1992 | Msa1465980:intergenic | 45.0% |
AGCCTAGAAGTTCCTCCTTT+AGG | + | tig0045774:2030-2049 | Msa1465980:intergenic | 45.0% | |
AAGAGACGGCTGATATTGCT+TGG | + | tig0045774:2116-2135 | Msa1465980:intergenic | 45.0% | |
TCCATCACTGCACAACAGAT+CGG | - | tig0045774:2159-2178 | Msa1465980:CDS | 45.0% | |
CTGCAACAGTGTTCCAATCA+AGG | + | tig0045774:2221-2240 | Msa1465980:intergenic | 45.0% | |
CTTGATTGGAACACTGTTGC+AGG | - | tig0045774:2219-2238 | Msa1465980:CDS | 45.0% | |
AACACTGTTGCAGGCTTCTT+AGG | - | tig0045774:2228-2247 | Msa1465980:CDS | 45.0% | |
AGGCTTCTTAGGAAGTCCTT+TGG | - | tig0045774:2239-2258 | Msa1465980:CDS | 45.0% | |
!! | ATGTTGATGATGGCAAAGCC+AGG | + | tig0045774:2270-2289 | Msa1465980:intergenic | 45.0% |
! | TCCAGCCGTTATGTTGATGA+TGG | + | tig0045774:2280-2299 | Msa1465980:intergenic | 45.0% |
GTCACGTTTGCTTTCCAGTA+TGG | - | tig0045774:2495-2514 | Msa1465980:CDS | 45.0% | |
CTGCAAAGCTCAATCCATAC+TGG | + | tig0045774:2512-2531 | Msa1465980:intergenic | 45.0% | |
TCACATGTTGTCCTCTTCCA+CGG | - | tig0045774:2549-2568 | Msa1465980:CDS | 45.0% | |
CAGATGTGGAAGAAGACAAC+GGG | - | tig0045774:2585-2604 | Msa1465980:CDS | 45.0% | |
ACTATGAACAGGTTCCTGAC+TGG | - | tig0045774:2658-2677 | Msa1465980:CDS | 45.0% | |
AAAGCCTTCACAAGCTACCA+AGG | + | tig0045774:2721-2740 | Msa1465980:intergenic | 45.0% | |
! | TTGGTAGCTTGTGAAGGCTT+TGG | - | tig0045774:2720-2739 | Msa1465980:CDS | 45.0% |
GAAAACAGCTCCAACTTCCA+TGG | - | tig0045774:2742-2761 | Msa1465980:CDS | 45.0% | |
GAAAGTAAGATTCCCCACCA+TGG | + | tig0045774:2762-2781 | Msa1465980:intergenic | 45.0% | |
ACATTAGCAAGTGGCTTTCC+TGG | + | tig0045774:2894-2913 | Msa1465980:intergenic | 45.0% | |
ATGTTCAGTGTGCAGCTAGT+AGG | - | tig0045774:3011-3030 | Msa1465980:CDS | 45.0% | |
! | CATGTCCAAGGACTTCCTTT+TGG | + | tig0045774:3122-3141 | Msa1465980:intergenic | 45.0% |
TCGATCATATGGGGAGTTGT+AGG | - | tig0045774:3170-3189 | Msa1465980:CDS | 45.0% | |
CGATCATATGGGGAGTTGTA+GGG | - | tig0045774:3171-3190 | Msa1465980:CDS | 45.0% | |
CTCAGGATAAACTCCGTCTT+TGG | + | tig0045774:3213-3232 | Msa1465980:intergenic | 45.0% | |
CAGGTGCAAGTAGACCAATA+AGG | + | tig0045774:3250-3269 | Msa1465980:intergenic | 45.0% | |
TTGAGAGAAAGAAGCCACAC+TGG | + | tig0045774:3275-3294 | Msa1465980:intergenic | 45.0% | |
TACTTGGGGAATTGTTGGCA+TGG | - | tig0045774:3388-3407 | Msa1465980:CDS | 45.0% | |
CAGCATCTAAACCAGCTGAA+AGG | + | tig0045774:3472-3491 | Msa1465980:intergenic | 45.0% | |
! | CTTTCAGCTGGTTTAGATGC+TGG | - | tig0045774:3470-3489 | Msa1465980:CDS | 45.0% |
GATGCTGGAGTTGCCTTTAT+AGG | - | tig0045774:3485-3504 | Msa1465980:CDS | 45.0% | |
TGAAGCAGATCATTGCCCTT+TGG | - | tig0045774:3568-3587 | Msa1465980:CDS | 45.0% | |
CTGTAGGACATCTAGCCAAA+GGG | + | tig0045774:3586-3605 | Msa1465980:intergenic | 45.0% | |
GAAGCTGAGATATCAAGCAG+TGG | - | tig0045774:1397-1416 | Msa1465980:CDS | 45.0% | |
! | GCAGTGGAGTGTCTCAAAAT+AGG | - | tig0045774:1413-1432 | Msa1465980:CDS | 45.0% |
ATAGTCCCATTGAGCAAGTG+AGG | - | tig0045774:1476-1495 | Msa1465980:CDS | 45.0% | |
TGAGAAGGGTCATCAGTGAT+TGG | + | tig0045774:1511-1530 | Msa1465980:intergenic | 45.0% | |
!! | ATGTTAGTGCTGGCTGAGAA+GGG | + | tig0045774:1525-1544 | Msa1465980:intergenic | 45.0% |
!! | AATGTTAGTGCTGGCTGAGA+AGG | + | tig0045774:1526-1545 | Msa1465980:intergenic | 45.0% |
CATGTCCTGAATGTTAGTGC+TGG | + | tig0045774:1535-1554 | Msa1465980:intergenic | 45.0% | |
CAGCACTAACATTCAGGACA+TGG | - | tig0045774:1533-1552 | Msa1465980:CDS | 45.0% | |
TCTTTCAAAGAGAATGGCCC+CGG | + | tig0045774:1748-1767 | Msa1465980:intergenic | 45.0% | |
ATCACCATCTTTGCTAGCTC+AGG | - | tig0045774:1778-1797 | Msa1465980:CDS | 45.0% | |
AGATCCTGAGCTAGCAAAGA+TGG | + | tig0045774:1785-1804 | Msa1465980:intergenic | 45.0% | |
CAAAGACATCCATCCAGTAG+CGG | - | tig0045774:1855-1874 | Msa1465980:CDS | 45.0% | |
GAAAATAAGCCGCTACTGGA+TGG | + | tig0045774:1867-1886 | Msa1465980:intergenic | 45.0% | |
GCTAGAAAATAAGCCGCTAC+TGG | + | tig0045774:1871-1890 | Msa1465980:intergenic | 45.0% | |
GCGCTATCAACTCAAATGCT+AGG | - | tig0045774:1889-1908 | Msa1465980:CDS | 45.0% | |
CTCAAATGCTAGGGTATGGA+TGG | - | tig0045774:1899-1918 | Msa1465980:CDS | 45.0% | |
!!! | GATGGGCTGGTATTTTCAGA+AGG | - | tig0045774:1917-1936 | Msa1465980:CDS | 45.0% |
!! | TTTTCAGGCCACCACATGTA+AGG | + | tig0045774:1958-1977 | Msa1465980:intergenic | 45.0% |
! | GACACTTGCACAAGGTTTTC+AGG | + | tig0045774:1973-1992 | Msa1465980:intergenic | 45.0% |
AGCCTAGAAGTTCCTCCTTT+AGG | + | tig0045774:2030-2049 | Msa1465980:intergenic | 45.0% | |
AAGAGACGGCTGATATTGCT+TGG | + | tig0045774:2116-2135 | Msa1465980:intergenic | 45.0% | |
TCCATCACTGCACAACAGAT+CGG | - | tig0045774:2159-2178 | Msa1465980:CDS | 45.0% | |
CTGCAACAGTGTTCCAATCA+AGG | + | tig0045774:2221-2240 | Msa1465980:intergenic | 45.0% | |
CTTGATTGGAACACTGTTGC+AGG | - | tig0045774:2219-2238 | Msa1465980:CDS | 45.0% | |
AACACTGTTGCAGGCTTCTT+AGG | - | tig0045774:2228-2247 | Msa1465980:CDS | 45.0% | |
AGGCTTCTTAGGAAGTCCTT+TGG | - | tig0045774:2239-2258 | Msa1465980:CDS | 45.0% | |
!! | ATGTTGATGATGGCAAAGCC+AGG | + | tig0045774:2270-2289 | Msa1465980:intergenic | 45.0% |
! | TCCAGCCGTTATGTTGATGA+TGG | + | tig0045774:2280-2299 | Msa1465980:intergenic | 45.0% |
GTCACGTTTGCTTTCCAGTA+TGG | - | tig0045774:2495-2514 | Msa1465980:CDS | 45.0% | |
CTGCAAAGCTCAATCCATAC+TGG | + | tig0045774:2512-2531 | Msa1465980:intergenic | 45.0% | |
TCACATGTTGTCCTCTTCCA+CGG | - | tig0045774:2549-2568 | Msa1465980:CDS | 45.0% | |
CAGATGTGGAAGAAGACAAC+GGG | - | tig0045774:2585-2604 | Msa1465980:CDS | 45.0% | |
ACTATGAACAGGTTCCTGAC+TGG | - | tig0045774:2658-2677 | Msa1465980:CDS | 45.0% | |
AAAGCCTTCACAAGCTACCA+AGG | + | tig0045774:2721-2740 | Msa1465980:intergenic | 45.0% | |
! | TTGGTAGCTTGTGAAGGCTT+TGG | - | tig0045774:2720-2739 | Msa1465980:CDS | 45.0% |
GAAAACAGCTCCAACTTCCA+TGG | - | tig0045774:2742-2761 | Msa1465980:CDS | 45.0% | |
GAAAGTAAGATTCCCCACCA+TGG | + | tig0045774:2762-2781 | Msa1465980:intergenic | 45.0% | |
ACATTAGCAAGTGGCTTTCC+TGG | + | tig0045774:2894-2913 | Msa1465980:intergenic | 45.0% | |
ATGTTCAGTGTGCAGCTAGT+AGG | - | tig0045774:3011-3030 | Msa1465980:CDS | 45.0% | |
! | CATGTCCAAGGACTTCCTTT+TGG | + | tig0045774:3122-3141 | Msa1465980:intergenic | 45.0% |
TCGATCATATGGGGAGTTGT+AGG | - | tig0045774:3170-3189 | Msa1465980:CDS | 45.0% | |
CGATCATATGGGGAGTTGTA+GGG | - | tig0045774:3171-3190 | Msa1465980:CDS | 45.0% | |
CTCAGGATAAACTCCGTCTT+TGG | + | tig0045774:3213-3232 | Msa1465980:intergenic | 45.0% | |
CAGGTGCAAGTAGACCAATA+AGG | + | tig0045774:3250-3269 | Msa1465980:intergenic | 45.0% | |
TTGAGAGAAAGAAGCCACAC+TGG | + | tig0045774:3275-3294 | Msa1465980:intergenic | 45.0% | |
TACTTGGGGAATTGTTGGCA+TGG | - | tig0045774:3388-3407 | Msa1465980:CDS | 45.0% | |
CAGCATCTAAACCAGCTGAA+AGG | + | tig0045774:3472-3491 | Msa1465980:intergenic | 45.0% | |
! | CTTTCAGCTGGTTTAGATGC+TGG | - | tig0045774:3470-3489 | Msa1465980:CDS | 45.0% |
GATGCTGGAGTTGCCTTTAT+AGG | - | tig0045774:3485-3504 | Msa1465980:CDS | 45.0% | |
TGAAGCAGATCATTGCCCTT+TGG | - | tig0045774:3568-3587 | Msa1465980:CDS | 45.0% | |
CTGTAGGACATCTAGCCAAA+GGG | + | tig0045774:3586-3605 | Msa1465980:intergenic | 45.0% | |
CTCAGCCAGCACTAACATTC+AGG | - | tig0045774:1527-1546 | Msa1465980:CDS | 50.0% | |
AGATCATCGCACTCCCACTT+GGG | - | tig0045774:1650-1669 | Msa1465980:CDS | 50.0% | |
ACTCCCACTTGGGAAGCTTA+TGG | - | tig0045774:1660-1679 | Msa1465980:CDS | 50.0% | |
CAGCCATAAGCTTCCCAAGT+GGG | + | tig0045774:1666-1685 | Msa1465980:intergenic | 50.0% | |
GGCCTAAAGGAGGAACTTCT+AGG | - | tig0045774:2025-2044 | Msa1465980:CDS | 50.0% | |
ACCGATCTGTTGTGCAGTGA+TGG | + | tig0045774:2163-2182 | Msa1465980:intergenic | 50.0% | |
! | ACTGCACAACAGATCGGTTC+CGG | - | tig0045774:2165-2184 | Msa1465980:CDS | 50.0% |
AATACCGAGGCCTTTCATGC+CGG | + | tig0045774:2187-2206 | Msa1465980:intergenic | 50.0% | |
!! | GGCCTCGGTATTGGTTCATT+TGG | - | tig0045774:2195-2214 | Msa1465980:CDS | 50.0% |
GGCCAAATGAACCAATACCG+AGG | + | tig0045774:2200-2219 | Msa1465980:intergenic | 50.0% | |
GCCATCATCAACATAACGGC+TGG | - | tig0045774:2276-2295 | Msa1465980:CDS | 50.0% | |
ATGAACAGGTTCCTGACTGG+TGG | - | tig0045774:2661-2680 | Msa1465980:CDS | 50.0% | |
ATAGCGACAAACCACCAGTC+AGG | + | tig0045774:2675-2694 | Msa1465980:intergenic | 50.0% | |
! | ATGGCCTTGGTAGCTTGTGA+AGG | - | tig0045774:2714-2733 | Msa1465980:CDS | 50.0% |
AACAGCTCCAACTTCCATGG+TGG | - | tig0045774:2745-2764 | Msa1465980:CDS | 50.0% | |
ACAGCTCCAACTTCCATGGT+GGG | - | tig0045774:2746-2765 | Msa1465980:CDS | 50.0% | |
AGATTCCCCACCATGGAAGT+TGG | + | tig0045774:2755-2774 | Msa1465980:intergenic | 50.0% | |
TGGCCATATCAGCATGGTAC+AGG | - | tig0045774:2929-2948 | Msa1465980:CDS | 50.0% | |
GTGCCTGTACCATGCTGATA+TGG | + | tig0045774:2935-2954 | Msa1465980:intergenic | 50.0% | |
ATCAGCATGGTACAGGCACT+AGG | - | tig0045774:2936-2955 | Msa1465980:CDS | 50.0% | |
TCAGCATGGTACAGGCACTA+GGG | - | tig0045774:2937-2956 | Msa1465980:CDS | 50.0% | |
!! | CTGTCCACTTTGGAACAGCA+TGG | - | tig0045774:3051-3070 | Msa1465980:CDS | 50.0% |
!! | TCCACTTTGGAACAGCATGG+TGG | - | tig0045774:3054-3073 | Msa1465980:CDS | 50.0% |
TCATCACCAGGACATGTCCA+AGG | + | tig0045774:3134-3153 | Msa1465980:intergenic | 50.0% | |
TACTTGCACCTGTTCCAGTG+TGG | - | tig0045774:3258-3277 | Msa1465980:CDS | 50.0% | |
GAAAGAAGCCACACTGGAAC+AGG | + | tig0045774:3269-3288 | Msa1465980:intergenic | 50.0% | |
GATGCACCTGCAGCGATAAT+AGG | + | tig0045774:3335-3354 | Msa1465980:intergenic | 50.0% | |
ATTATCGCTGCAGGTGCATC+TGG | - | tig0045774:3335-3354 | Msa1465980:CDS | 50.0% | |
GCTGTAGGACATCTAGCCAA+AGG | + | tig0045774:3587-3606 | Msa1465980:intergenic | 50.0% | |
GAATGTACACCTGGAGCTGT+AGG | + | tig0045774:3602-3621 | Msa1465980:intergenic | 50.0% | |
AGCTCCAGGTGTACATTCAG+AGG | - | tig0045774:3604-3623 | Msa1465980:CDS | 50.0% | |
GCTCCAGGTGTACATTCAGA+GGG | - | tig0045774:3605-3624 | Msa1465980:CDS | 50.0% | |
CTCCAGGTGTACATTCAGAG+GGG | - | tig0045774:3606-3625 | Msa1465980:CDS | 50.0% | |
CTCAGCCAGCACTAACATTC+AGG | - | tig0045774:1527-1546 | Msa1465980:CDS | 50.0% | |
AGATCATCGCACTCCCACTT+GGG | - | tig0045774:1650-1669 | Msa1465980:CDS | 50.0% | |
ACTCCCACTTGGGAAGCTTA+TGG | - | tig0045774:1660-1679 | Msa1465980:CDS | 50.0% | |
CAGCCATAAGCTTCCCAAGT+GGG | + | tig0045774:1666-1685 | Msa1465980:intergenic | 50.0% | |
GGCCTAAAGGAGGAACTTCT+AGG | - | tig0045774:2025-2044 | Msa1465980:CDS | 50.0% | |
ACCGATCTGTTGTGCAGTGA+TGG | + | tig0045774:2163-2182 | Msa1465980:intergenic | 50.0% | |
! | ACTGCACAACAGATCGGTTC+CGG | - | tig0045774:2165-2184 | Msa1465980:CDS | 50.0% |
AATACCGAGGCCTTTCATGC+CGG | + | tig0045774:2187-2206 | Msa1465980:intergenic | 50.0% | |
!! | GGCCTCGGTATTGGTTCATT+TGG | - | tig0045774:2195-2214 | Msa1465980:CDS | 50.0% |
GGCCAAATGAACCAATACCG+AGG | + | tig0045774:2200-2219 | Msa1465980:intergenic | 50.0% | |
GCCATCATCAACATAACGGC+TGG | - | tig0045774:2276-2295 | Msa1465980:CDS | 50.0% | |
ATGAACAGGTTCCTGACTGG+TGG | - | tig0045774:2661-2680 | Msa1465980:CDS | 50.0% | |
ATAGCGACAAACCACCAGTC+AGG | + | tig0045774:2675-2694 | Msa1465980:intergenic | 50.0% | |
! | ATGGCCTTGGTAGCTTGTGA+AGG | - | tig0045774:2714-2733 | Msa1465980:CDS | 50.0% |
AACAGCTCCAACTTCCATGG+TGG | - | tig0045774:2745-2764 | Msa1465980:CDS | 50.0% | |
ACAGCTCCAACTTCCATGGT+GGG | - | tig0045774:2746-2765 | Msa1465980:CDS | 50.0% | |
AGATTCCCCACCATGGAAGT+TGG | + | tig0045774:2755-2774 | Msa1465980:intergenic | 50.0% | |
TGGCCATATCAGCATGGTAC+AGG | - | tig0045774:2929-2948 | Msa1465980:CDS | 50.0% | |
GTGCCTGTACCATGCTGATA+TGG | + | tig0045774:2935-2954 | Msa1465980:intergenic | 50.0% | |
ATCAGCATGGTACAGGCACT+AGG | - | tig0045774:2936-2955 | Msa1465980:CDS | 50.0% | |
TCAGCATGGTACAGGCACTA+GGG | - | tig0045774:2937-2956 | Msa1465980:CDS | 50.0% | |
!! | CTGTCCACTTTGGAACAGCA+TGG | - | tig0045774:3051-3070 | Msa1465980:CDS | 50.0% |
!! | TCCACTTTGGAACAGCATGG+TGG | - | tig0045774:3054-3073 | Msa1465980:CDS | 50.0% |
TCATCACCAGGACATGTCCA+AGG | + | tig0045774:3134-3153 | Msa1465980:intergenic | 50.0% | |
TACTTGCACCTGTTCCAGTG+TGG | - | tig0045774:3258-3277 | Msa1465980:CDS | 50.0% | |
GAAAGAAGCCACACTGGAAC+AGG | + | tig0045774:3269-3288 | Msa1465980:intergenic | 50.0% | |
GATGCACCTGCAGCGATAAT+AGG | + | tig0045774:3335-3354 | Msa1465980:intergenic | 50.0% | |
ATTATCGCTGCAGGTGCATC+TGG | - | tig0045774:3335-3354 | Msa1465980:CDS | 50.0% | |
GCTGTAGGACATCTAGCCAA+AGG | + | tig0045774:3587-3606 | Msa1465980:intergenic | 50.0% | |
GAATGTACACCTGGAGCTGT+AGG | + | tig0045774:3602-3621 | Msa1465980:intergenic | 50.0% | |
AGCTCCAGGTGTACATTCAG+AGG | - | tig0045774:3604-3623 | Msa1465980:CDS | 50.0% | |
GCTCCAGGTGTACATTCAGA+GGG | - | tig0045774:3605-3624 | Msa1465980:CDS | 50.0% | |
CTCCAGGTGTACATTCAGAG+GGG | - | tig0045774:3606-3625 | Msa1465980:CDS | 50.0% | |
CAGATCATCGCACTCCCACT+TGG | - | tig0045774:1649-1668 | Msa1465980:CDS | 55.0% | |
GCAGCCATAAGCTTCCCAAG+TGG | + | tig0045774:1667-1686 | Msa1465980:intergenic | 55.0% | |
ATGCTAGGGTATGGATGGGC+TGG | - | tig0045774:1904-1923 | Msa1465980:CDS | 55.0% | |
! | CAGATCGGTTCCGGCATGAA+AGG | - | tig0045774:2174-2193 | Msa1465980:CDS | 55.0% |
GGCATGAAAGGCCTCGGTAT+TGG | - | tig0045774:2186-2205 | Msa1465980:CDS | 55.0% | |
GGAAGTCCTTTGGCTGTTCC+TGG | - | tig0045774:2249-2268 | Msa1465980:CDS | 55.0% | |
GCAAAGCCAGGAACAGCCAA+AGG | + | tig0045774:2258-2277 | Msa1465980:intergenic | 55.0% | |
CAGCTCCAACTTCCATGGTG+GGG | - | tig0045774:2747-2766 | Msa1465980:CDS | 55.0% | |
GCCACCATGCTGTTCCAAAG+TGG | + | tig0045774:3058-3077 | Msa1465980:intergenic | 55.0% | |
GGAAGTCCTTGGACATGTCC+TGG | - | tig0045774:3125-3144 | Msa1465980:CDS | 55.0% | |
GCTTCAAGACCCCACCAAGT+TGG | + | tig0045774:3554-3573 | Msa1465980:intergenic | 55.0% | |
GCTAGATGTCCTACAGCTCC+AGG | - | tig0045774:3590-3609 | Msa1465980:CDS | 55.0% | |
CACCCCTCTGAATGTACACC+TGG | + | tig0045774:3611-3630 | Msa1465980:intergenic | 55.0% | |
CAGATCATCGCACTCCCACT+TGG | - | tig0045774:1649-1668 | Msa1465980:CDS | 55.0% | |
GCAGCCATAAGCTTCCCAAG+TGG | + | tig0045774:1667-1686 | Msa1465980:intergenic | 55.0% | |
ATGCTAGGGTATGGATGGGC+TGG | - | tig0045774:1904-1923 | Msa1465980:CDS | 55.0% | |
! | CAGATCGGTTCCGGCATGAA+AGG | - | tig0045774:2174-2193 | Msa1465980:CDS | 55.0% |
GGCATGAAAGGCCTCGGTAT+TGG | - | tig0045774:2186-2205 | Msa1465980:CDS | 55.0% | |
GGAAGTCCTTTGGCTGTTCC+TGG | - | tig0045774:2249-2268 | Msa1465980:CDS | 55.0% | |
GCAAAGCCAGGAACAGCCAA+AGG | + | tig0045774:2258-2277 | Msa1465980:intergenic | 55.0% | |
CAGCTCCAACTTCCATGGTG+GGG | - | tig0045774:2747-2766 | Msa1465980:CDS | 55.0% | |
GCCACCATGCTGTTCCAAAG+TGG | + | tig0045774:3058-3077 | Msa1465980:intergenic | 55.0% | |
GGAAGTCCTTGGACATGTCC+TGG | - | tig0045774:3125-3144 | Msa1465980:CDS | 55.0% | |
GCTTCAAGACCCCACCAAGT+TGG | + | tig0045774:3554-3573 | Msa1465980:intergenic | 55.0% | |
GCTAGATGTCCTACAGCTCC+AGG | - | tig0045774:3590-3609 | Msa1465980:CDS | 55.0% | |
CACCCCTCTGAATGTACACC+TGG | + | tig0045774:3611-3630 | Msa1465980:intergenic | 55.0% | |
GGTTCCGGCATGAAAGGCCT+CGG | - | tig0045774:2180-2199 | Msa1465980:CDS | 60.0% | |
GGTTCCGGCATGAAAGGCCT+CGG | - | tig0045774:2180-2199 | Msa1465980:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0045774 | gene | 1397 | 3643 | 1397 | ID=Msa1465980;Name=Msa1465980 |
tig0045774 | mRNA | 1397 | 3643 | 1397 | ID=Msa1465980-mRNA-1;Parent=Msa1465980;Name=Msa1465980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|748 |
tig0045774 | exon | 1397 | 3643 | 1397 | ID=Msa1465980-mRNA-1:exon:24945;Parent=Msa1465980-mRNA-1 |
tig0045774 | CDS | 1397 | 3643 | 1397 | ID=Msa1465980-mRNA-1:cds;Parent=Msa1465980-mRNA-1 |
Gene Sequence |
Protein sequence |