AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0685390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0685390 MtrunA17_Chr4g0033641 99.167 240 2 0 1 240 1 240 7.21e-179 490
Msa0685390 MtrunA17_Chr2g0329511 69.262 244 70 3 1 240 1 243 6.70e-117 333
Msa0685390 MtrunA17_Chr2g0314671 60.550 109 43 0 1 109 1 109 7.98e-43 146
Msa0685390 MtrunA17_Chr1g0155811 34.799 273 133 8 1 240 1 261 8.15e-38 133
Msa0685390 MtrunA17_Chr3g0145061 54.717 106 47 1 1 105 1 106 1.41e-35 126
Msa0685390 MtrunA17_Chr4g0035651 49.558 113 56 1 1 112 1 113 1.72e-35 125
Msa0685390 MtrunA17_Chr3g0142221 52.830 106 48 1 1 104 1 106 1.12e-32 118
Msa0685390 MtrunA17_Chr5g0405151 42.537 134 71 4 1 131 1 131 4.28e-25 97.8
Msa0685390 MtrunA17_Chr7g0220721 43.478 92 43 1 5 96 26 108 7.10e-19 84.7
Msa0685390 MtrunA17_Chr7g0220721 40.845 71 36 1 5 75 69 133 8.40e-11 61.2
Msa0685390 MtrunA17_Chr3g0136701 43.750 96 45 1 5 100 6 92 1.45e-18 82.4
Msa0685390 MtrunA17_Chr1g0150471 42.391 92 44 1 5 96 6 88 1.93e-18 82.4
Msa0685390 MtrunA17_Chr4g0072871 39.130 92 47 1 5 96 22 104 9.33e-17 78.6
Msa0685390 MtrunA17_Chr7g0268691 41.837 98 47 2 5 102 20 107 7.17e-16 75.9
Msa0685390 MtrunA17_Chr5g0429341 35.417 96 53 1 1 96 1 87 3.61e-14 71.2
Msa0685390 MtrunA17_Chr3g0120711 38.542 96 49 2 1 96 1 86 5.05e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0685390 AT1G06040.1 62.500 248 85 4 1 240 1 248 9.03e-105 303
Msa0685390 AT2G31380.1 59.836 244 88 7 1 240 1 238 3.20e-92 271
Msa0685390 AT1G06040.2 66.071 168 51 3 1 162 1 168 2.76e-70 213
Msa0685390 AT1G78600.1 56.800 125 52 1 1 125 1 123 5.74e-42 145
Msa0685390 AT1G78600.2 56.800 125 52 1 1 125 1 123 1.23e-41 144
Msa0685390 AT4G10240.1 47.619 147 64 4 1 141 1 140 2.44e-36 126
Msa0685390 AT1G75540.1 56.522 115 47 2 1 112 1 115 5.63e-36 130
Msa0685390 AT4G39070.1 45.890 146 76 2 1 145 1 144 8.44e-34 122
Msa0685390 AT2G21320.1 50.000 104 49 2 1 104 1 101 4.36e-25 97.8
Msa0685390 AT4G38960.1 42.424 132 68 3 1 127 1 129 6.52e-25 97.4
Msa0685390 AT4G38960.6 42.424 132 68 3 1 127 1 129 6.52e-25 97.4
Msa0685390 AT5G15850.1 33.143 175 90 4 5 163 12 175 8.24e-20 87.4
Msa0685390 AT2G24790.2 43.478 92 43 1 5 96 8 90 1.23e-18 82.0
Msa0685390 AT2G24790.1 43.478 92 43 1 5 96 8 90 1.33e-18 83.2
Msa0685390 AT3G02380.1 43.478 92 43 1 5 96 16 98 1.59e-17 80.9
Msa0685390 AT5G15840.2 35.200 125 72 1 5 129 20 135 2.40e-17 79.3
Msa0685390 AT5G15840.1 35.200 125 72 1 5 129 20 135 2.46e-17 80.5
Msa0685390 AT4G38960.3 32.000 175 68 4 1 127 1 172 5.73e-17 77.4
Msa0685390 AT5G24930.1 41.667 96 47 1 5 100 6 92 7.92e-17 79.0
Msa0685390 AT2G47890.3 42.353 85 40 1 5 89 13 88 2.23e-14 71.6
Msa0685390 AT2G47890.1 42.353 85 40 1 5 89 13 88 2.27e-14 71.6
Msa0685390 AT2G47890.2 42.353 85 40 1 5 89 13 88 4.31e-14 69.7
Msa0685390 AT1G28050.1 34.653 101 57 1 2 102 6 97 3.95e-13 68.6
Msa0685390 AT1G68190.2 34.375 96 52 2 1 96 39 123 7.36e-13 67.8
Msa0685390 AT1G68190.1 34.375 96 52 2 1 96 10 94 8.24e-13 67.4
Msa0685390 AT1G68190.3 34.375 96 52 2 1 96 10 94 8.24e-13 67.4
Msa0685390 AT2G33500.1 34.000 100 57 1 3 102 10 100 1.22e-12 67.0
Msa0685390 AT2G33500.2 34.000 100 57 1 3 102 10 100 1.27e-12 67.0
Msa0685390 AT3G07650.3 37.647 85 44 1 1 85 1 76 1.42e-12 66.6
Msa0685390 AT3G07650.2 37.647 85 44 1 1 85 1 76 1.42e-12 66.6
Msa0685390 AT3G07650.4 37.647 85 44 1 1 85 1 76 1.42e-12 66.6
Msa0685390 AT3G07650.1 37.647 85 44 1 1 85 1 76 1.42e-12 66.6
Msa0685390 AT5G48250.1 32.653 98 55 2 1 96 1 89 1.98e-11 63.5
Msa0685390 AT5G57660.1 33.333 93 49 2 4 96 21 100 2.69e-11 62.8

Find 80 sgRNAs with CRISPR-Local

Find 522 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGTAGCTGGTAGTCTTTC+TGG 0.109250 4_4:-49500607 Msa0685390:CDS
TTGGGCTGTTGATGATTTCT+TGG 0.216145 4_4:-49500425 Msa0685390:CDS
TGTTATCTTGAAGACCATTT+TGG 0.227854 4_4:-49499299 Msa0685390:three_prime_UTR
TGCTCTATGTTCCTTAAGTA+TGG 0.249200 4_4:+49499208 None:intergenic
GATGATTTCTTGGAATTAAC+TGG 0.278064 4_4:-49500415 Msa0685390:CDS
TATAATATTCCAAACCCTTT+TGG 0.279477 4_4:+49506887 None:intergenic
CAGAAGCAATCCATGGAGTT+TGG 0.289917 4_4:-49499821 Msa0685390:CDS
ACTTGGCAGATATCACATTT+AGG 0.310599 4_4:+49506643 None:intergenic
GTAAGACATATAAGATTTAG+AGG 0.311347 4_4:+49499676 None:intergenic
TCACACCCTCCATGCAATAT+TGG 0.314951 4_4:-49499351 Msa0685390:three_prime_UTR
TTATGTTGTGTATGGTACTA+TGG 0.330811 4_4:-49499323 Msa0685390:three_prime_UTR
ACACTGCCAGCATGCATTAC+TGG 0.340744 4_4:+49499713 None:intergenic
TACCGGTATCCGTGTGGCTT+TGG 0.344898 4_4:-49500563 Msa0685390:CDS
ACGGGAACTTGTTGCGTGTC+TGG 0.356267 4_4:+49500490 None:intergenic
AAAATAGTCAAAAGTATTGA+TGG 0.360457 4_4:+49506922 None:intergenic
AGCGTAGAATTATACCTTAA+AGG 0.365074 4_4:-49499425 Msa0685390:three_prime_UTR
TAAAGTTGTCTTACCTTGTC+TGG 0.367338 4_4:+49500382 None:intergenic
TGCCTAGTTTCGCATCCTCT+TGG 0.378192 4_4:-49500444 Msa0685390:CDS
CACACCCTCCATGCAATATT+GGG 0.380893 4_4:-49499350 Msa0685390:three_prime_UTR
GCCTAGTTTCGCATCCTCTT+GGG 0.385410 4_4:-49500443 Msa0685390:CDS
CTTGTGCTTTAGCCGAGATC+TGG 0.392687 4_4:+49499596 None:intergenic
CTCATCCATCTACAGATTCA+TGG 0.393449 4_4:+49499553 None:intergenic
CAAAACTGCTATAAGTACTA+TGG 0.400726 4_4:-49499187 Msa0685390:three_prime_UTR
AGACTACCAGCTACATGAAT+TGG 0.402532 4_4:+49500613 None:intergenic
CTAAACCTTCCTGAGGAAAC+TGG 0.421815 4_4:+49499759 None:intergenic
GTGTAGCAATTATACCAAAA+TGG 0.430154 4_4:+49499285 None:intergenic
ATTAACTTGATCCATACTTA+AGG 0.430475 4_4:-49499219 Msa0685390:three_prime_UTR
TAAGATTTAGAGGCTTTGTA+AGG 0.437114 4_4:+49499686 None:intergenic
CGATGATGATGAGCACTTCA+TGG 0.441777 4_4:-49499621 Msa0685390:CDS
TGAGTGAATGGAATATGTTT+TGG 0.446035 4_4:+49506995 None:intergenic
TGGAGTTTGGAGAGCTTGAA+TGG 0.451045 4_4:-49499808 Msa0685390:CDS
TGGGTAGTTTATGTTGTGTA+TGG 0.451498 4_4:-49499331 Msa0685390:three_prime_UTR
TGTTGCGTGTCTGGATTAGA+TGG 0.466529 4_4:+49500499 None:intergenic
CTGTTCCATGAATCTGTAGA+TGG 0.473976 4_4:-49499558 Msa0685390:three_prime_UTR
AGCCAAAGCCACACGGATAC+CGG 0.489165 4_4:+49500561 None:intergenic
AAAGGTATTAAAACTTTGCA+TGG 0.491551 4_4:-49499407 Msa0685390:three_prime_UTR
GCACAACAAATCACCGTAGC+AGG 0.495596 4_4:+49506772 None:intergenic
ACAGATTCATGGAACAGAAC+AGG 0.496323 4_4:+49499564 None:intergenic
CTGGATTAGATGGTTCAACT+TGG 0.497438 4_4:+49500509 None:intergenic
TTTCAATGACCAGTTTCCTC+AGG 0.500064 4_4:-49499768 Msa0685390:CDS
CTGAGGAGGAGAAACTTTGA+CGG 0.504586 4_4:+49500471 None:intergenic
CACTTCATGGTGCCAGATCT+CGG 0.507917 4_4:-49499608 Msa0685390:CDS
TACCGGTAGCAAGGAAGCGC+TGG 0.512715 4_4:+49500578 None:intergenic
CTTGAATGGCTATCGGATGC+AGG 0.516958 4_4:-49499794 Msa0685390:CDS
TATTGGAAGAGAAGAGGTGT+TGG 0.520050 4_4:-49506844 Msa0685390:five_prime_UTR
TCAACACAAAATATGAAAGC+TGG 0.522233 4_4:+49500670 None:intergenic
GCCCAAGAGGATGCGAAACT+AGG 0.529539 4_4:+49500442 None:intergenic
TCATGTCGGACTTCAATCCT+AGG 0.531676 4_4:+49499647 None:intergenic
AGACCGAGCACTGTTCTGTA+AGG 0.533969 4_4:-49500647 Msa0685390:CDS
AGTGTGTGAATGAGAAGATA+AGG 0.538140 4_4:+49507036 None:intergenic
AGCTTGCTAGCAAGCATCAA+AGG 0.550543 4_4:-49506696 Msa0685390:CDS
AAGAGGTGTTGGATTTGTGA+AGG 0.550950 4_4:-49506833 Msa0685390:five_prime_UTR
TTCAAGCTCTCCAAACTCCA+TGG 0.552963 4_4:+49499811 None:intergenic
CACCAGCGCTTCCTTGCTAC+CGG 0.553385 4_4:-49500580 Msa0685390:CDS
TGGAGAGCTTGAATGGCTAT+CGG 0.557707 4_4:-49499801 Msa0685390:CDS
ATAAACTACCCAATATTGCA+TGG 0.564087 4_4:+49499342 None:intergenic
AAACTAGGCACTTGCTGAGG+AGG 0.565089 4_4:+49500457 None:intergenic
TGGTATAATTGCTACACTGA+GGG 0.566135 4_4:-49499279 Msa0685390:three_prime_UTR
ATGGAACAGAACAGGTGAGA+TGG 0.570316 4_4:+49499572 None:intergenic
CAACTTCCAGTAATGCATGC+TGG 0.570734 4_4:-49499719 Msa0685390:CDS
GATCATTGTTTACAATCTAG+AGG 0.572052 4_4:-49499377 Msa0685390:three_prime_UTR
TGAGGAGGAGAAACTTTGAC+GGG 0.575513 4_4:+49500472 None:intergenic
AATGACCAGTTTCCTCAGGA+AGG 0.575639 4_4:-49499764 Msa0685390:CDS
TAGTCAAAAGTATTGATGGA+TGG 0.582591 4_4:+49506926 None:intergenic
ACTACCCAATATTGCATGGA+GGG 0.586758 4_4:+49499346 None:intergenic
CATCATCATCGTCTTCATGT+CGG 0.589449 4_4:+49499633 None:intergenic
CGGTAGCAAGGAAGCGCTGG+TGG 0.597801 4_4:+49500581 None:intergenic
GAAATCATCAACAGCCCAAG+AGG 0.601713 4_4:+49500429 None:intergenic
GATGAACCAATTCATGTAGC+TGG 0.610215 4_4:-49500619 Msa0685390:CDS
TGGCTTTGATTCACCAGACA+AGG 0.610663 4_4:-49500395 Msa0685390:intron
GCATGCATTACTGGAAGTTG+CGG 0.617995 4_4:+49499722 None:intergenic
CCACACGGATACCGGTAGCA+AGG 0.621121 4_4:+49500569 None:intergenic
AACTAGAAGCCAAAGCCACA+CGG 0.621527 4_4:+49500554 None:intergenic
AGTCCTTACAGAACAGTGCT+CGG 0.631276 4_4:+49500644 None:intergenic
CCTTGCTACCGGTATCCGTG+TGG 0.645262 4_4:-49500569 Msa0685390:CDS
GTGTGAGAAAGCTCCTGCTA+CGG 0.646630 4_4:-49506785 Msa0685390:CDS
GCGAAACTAGGCACTTGCTG+AGG 0.649769 4_4:+49500454 None:intergenic
TTGGTATAATTGCTACACTG+AGG 0.658332 4_4:-49499280 Msa0685390:three_prime_UTR
AACTACCCAATATTGCATGG+AGG 0.686860 4_4:+49499345 None:intergenic
GCTGCAGCTAAACCTTCCTG+AGG 0.726877 4_4:+49499752 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTAAAATAATATTTT+TGG - chr4_4:49499494-49499513 Msa0685390:three_prime_UTR 0.0%
!! AATTAAAAAAAAGACTTTAA+AGG + chr4_4:49499481-49499500 None:intergenic 10.0%
!!! AATAATATATTGAATTTTGT+AGG - chr4_4:49499538-49499557 Msa0685390:three_prime_UTR 10.0%
!! CAAATATTAAAACAATATAA+AGG + chr4_4:49506131-49506150 None:intergenic 10.0%
!!! CTTTATATTGTTTTAATATT+TGG - chr4_4:49506129-49506148 Msa0685390:intron 10.0%
!! CTTCTTATTCAAAATAAATA+GGG + chr4_4:49500002-49500021 None:intergenic 15.0%
!! TAATTGTTAAGTAAACTTAA+TGG + chr4_4:49500355-49500374 None:intergenic 15.0%
!! TGAATTAGATTTCAATTATT+GGG - chr4_4:49500839-49500858 Msa0685390:intron 15.0%
!! TAATTGTTAAGTAAACTTAA+TGG + chr4_4:49500355-49500374 None:intergenic 15.0%
!! ATATTAAAACAATATAAAGG+AGG + chr4_4:49506128-49506147 None:intergenic 15.0%
!!! AAAATAGTCAAAAGTATTGA+TGG + chr4_4:49499076-49499095 None:intergenic 20.0%
!!! TCAATACTTTTGACTATTTT+TGG - chr4_4:49499076-49499095 Msa0685390:three_prime_UTR 20.0%
!! GATAGACAGTTTAAAAATAT+TGG - chr4_4:49499134-49499153 Msa0685390:three_prime_UTR 20.0%
!!! ATTTTGTAGGATTTAAGATT+AGG - chr4_4:49499551-49499570 Msa0685390:three_prime_UTR 20.0%
!!! TTTTGTAGGATTTAAGATTA+GGG - chr4_4:49499552-49499571 Msa0685390:three_prime_UTR 20.0%
!! AATAAATTATTATGGGAGTT+TGG - chr4_4:49499625-49499644 Msa0685390:CDS 20.0%
!! TGTGCAAAAAAAAATAACAT+GGG + chr4_4:49499679-49499698 None:intergenic 20.0%
!! ATGTGCAAAAAAAAATAACA+TGG + chr4_4:49499680-49499699 None:intergenic 20.0%
!! GCTTCTTATTCAAAATAAAT+AGG + chr4_4:49500003-49500022 None:intergenic 20.0%
!! CTTATGTTTGTATAATTACT+TGG - chr4_4:49500413-49500432 Msa0685390:CDS 20.0%
!!! AGCATATTTTGAAAAAGATA+TGG - chr4_4:49500773-49500792 Msa0685390:intron 20.0%
!! TCTAATTCAGAATTCAATTT+GGG + chr4_4:49500828-49500847 None:intergenic 20.0%
!! ATCTAATTCAGAATTCAATT+TGG + chr4_4:49500829-49500848 None:intergenic 20.0%
!! CTGAATTAGATTTCAATTAT+TGG - chr4_4:49500838-49500857 Msa0685390:intron 20.0%
!!! AAATAAACTGTGTTGATTTT+GGG + chr4_4:49501777-49501796 None:intergenic 20.0%
!!! AAAATAAACTGTGTTGATTT+TGG + chr4_4:49501778-49501797 None:intergenic 20.0%
!! TTTCAGAAGAAGAAAATATT+TGG - chr4_4:49501813-49501832 Msa0685390:intron 20.0%
!! AGAAGAAAATATTTGGTATT+TGG - chr4_4:49501820-49501839 Msa0685390:intron 20.0%
!! TAATTCAAATATTCCAATTG+AGG - chr4_4:49501931-49501950 Msa0685390:intron 20.0%
!! AATTCAAATATTCCAATTGA+GGG - chr4_4:49501932-49501951 Msa0685390:intron 20.0%
!! AGAAAAAAGTTAGATGATAA+AGG - chr4_4:49502949-49502968 Msa0685390:intron 20.0%
!! AATTGAGAAGAATAAAACAT+GGG - chr4_4:49503401-49503420 Msa0685390:intron 20.0%
!! TAATTGGAAAATACATCAAA+TGG - chr4_4:49503635-49503654 Msa0685390:intron 20.0%
!!! GATTCTTATTTCATTCAAAA+CGG - chr4_4:49503816-49503835 Msa0685390:intron 20.0%
!!! TATTTTGAAGAAATTCAAGA+TGG - chr4_4:49504091-49504110 Msa0685390:intron 20.0%
!!! TCAAACTTTTATAATGAGTT+GGG + chr4_4:49504193-49504212 None:intergenic 20.0%
!!! ATCAAACTTTTATAATGAGT+TGG + chr4_4:49504194-49504213 None:intergenic 20.0%
!! ACTCATTATAAAAGTTTGAT+TGG - chr4_4:49504194-49504213 Msa0685390:intron 20.0%
!! ATTACCATAAAAAATTCCTT+CGG + chr4_4:49504357-49504376 None:intergenic 20.0%
!! CTTATGTTTGTATAATTACT+TGG - chr4_4:49500413-49500432 Msa0685390:CDS 20.0%
!!! TCTGTTTATATGAATTTTTG+AGG - chr4_4:49506002-49506021 Msa0685390:intron 20.0%
!! TACTGTTAACATAATCATAA+AGG + chr4_4:49506089-49506108 None:intergenic 20.0%
!!! TAAAATGTCATTTTTGTTGA+CGG + chr4_4:49506917-49506936 None:intergenic 20.0%
!! TCAAAAAAATCATTGTAAGT+TGG - chr4_4:49506983-49507002 Msa0685390:five_prime_UTR 20.0%
!! TATAATATTCCAAACCCTTT+TGG + chr4_4:49499111-49499130 None:intergenic 25.0%
! TAAAAATATTGGAAGAGAAG+AGG - chr4_4:49499145-49499164 Msa0685390:three_prime_UTR 25.0%
! AAAATCTTCATGAATCTACA+TGG + chr4_4:49499723-49499742 None:intergenic 25.0%
! ATGCTATAATTGTCTTTGAT+TGG - chr4_4:49499786-49499805 Msa0685390:CDS 25.0%
! ATAATTGTCTTTGATTGGAT+TGG - chr4_4:49499791-49499810 Msa0685390:CDS 25.0%
!!! AAGACATTGATTTCTATCTA+TGG + chr4_4:49499847-49499866 None:intergenic 25.0%
! ATAGATAGAAATCAATGTCT+TGG - chr4_4:49499846-49499865 Msa0685390:intron 25.0%
! AATCAATGTCTTGGAATAAA+TGG - chr4_4:49499855-49499874 Msa0685390:intron 25.0%
!!! ATTTTGAATAAGAAGCATCT+AGG - chr4_4:49500007-49500026 Msa0685390:intron 25.0%
!!! AAGATTTTAGAAGTATGATG+TGG - chr4_4:49500252-49500271 Msa0685390:intron 25.0%
!! CTTAGTATTTTGCCTATAAA+AGG - chr4_4:49500467-49500486 Msa0685390:CDS 25.0%
! GAAAACTTTATATGTCACAA+TGG + chr4_4:49500504-49500523 None:intergenic 25.0%
! TATTAAGAGAAACAAAGAAG+AGG + chr4_4:49500556-49500575 None:intergenic 25.0%
! GATACCAATTTGATATCAAT+GGG + chr4_4:49500604-49500623 None:intergenic 25.0%
! TGATACCAATTTGATATCAA+TGG + chr4_4:49500605-49500624 None:intergenic 25.0%
! CAAACAATTTCAATATCGTT+TGG - chr4_4:49500796-49500815 Msa0685390:intron 25.0%
!! GGAATAGATTACTCAATTTT+CGG - chr4_4:49500987-49501006 Msa0685390:intron 25.0%
! TTTCAGTCTTCTCTAATATT+CGG + chr4_4:49501361-49501380 None:intergenic 25.0%
! AATTTCAATCAATCACATCA+AGG - chr4_4:49501572-49501591 Msa0685390:intron 25.0%
!! AATAATGGTTGCTTTAATTG+TGG - chr4_4:49501665-49501684 Msa0685390:intron 25.0%
! TGAATTATTTCCAAACTTCA+CGG + chr4_4:49501918-49501937 None:intergenic 25.0%
! ATTCAAATATTCCAATTGAG+GGG - chr4_4:49501933-49501952 Msa0685390:intron 25.0%
!! GATGGATCGTAAAATTTTAT+TGG - chr4_4:49501983-49502002 Msa0685390:intron 25.0%
! CAATAATTCCAAATGATGAT+TGG - chr4_4:49502206-49502225 Msa0685390:intron 25.0%
!!! TATTGATGATTTTAGCAGAA+AGG - chr4_4:49502483-49502502 Msa0685390:intron 25.0%
!!! AACTTTTTTCTGATTTGATC+TGG + chr4_4:49502940-49502959 None:intergenic 25.0%
!!! AAAGTTGATAATCTCTTCAT+CGG + chr4_4:49503292-49503311 None:intergenic 25.0%
! TGAAAATTGGAAAAAAGCTA+TGG - chr4_4:49503362-49503381 Msa0685390:intron 25.0%
! CAATTGAGAAGAATAAAACA+TGG - chr4_4:49503400-49503419 Msa0685390:intron 25.0%
! ACTTCAAAATAATCAATACC+TGG + chr4_4:49503555-49503574 None:intergenic 25.0%
!!! AGATTGAAGAAAGCATTATA+TGG - chr4_4:49503756-49503775 Msa0685390:intron 25.0%
! AGGATTCTTCGTTATATTAA+AGG - chr4_4:49504323-49504342 Msa0685390:intron 25.0%
! AAATCGAATATCAATATGCT+TGG + chr4_4:49504693-49504712 None:intergenic 25.0%
!! CTTCATTTTGTAAAATGACT+CGG + chr4_4:49504813-49504832 None:intergenic 25.0%
! TACAAAATGAAGAAAATGCT+TGG - chr4_4:49504821-49504840 Msa0685390:intron 25.0%
!!! AAGATTTTAGAAGTATGATG+TGG - chr4_4:49500252-49500271 Msa0685390:intron 25.0%
!! CTTAGTATTTTGCCTATAAA+AGG - chr4_4:49500467-49500486 Msa0685390:CDS 25.0%
! GAAAACTTTATATGTCACAA+TGG + chr4_4:49500504-49500523 None:intergenic 25.0%
! TATTAAGAGAAACAAAGAAG+AGG + chr4_4:49500556-49500575 None:intergenic 25.0%
! ATCCTATAGTTATAAGATGA+AGG + chr4_4:49505302-49505321 None:intergenic 25.0%
! TGAGAGATTATGATTTATGA+TGG - chr4_4:49505691-49505710 Msa0685390:intron 25.0%
!! AGATTATGATTTATGATGGA+GGG - chr4_4:49505695-49505714 Msa0685390:intron 25.0%
! CATTATTTCATTAAACGAAC+TGG + chr4_4:49505930-49505949 None:intergenic 25.0%
! TCATATAAACAGAAACCAAA+CGG + chr4_4:49505995-49506014 None:intergenic 25.0%
! GTAAGACATATAAGATTTAG+AGG + chr4_4:49506322-49506341 None:intergenic 25.0%
!!! GCAAAGTTTTAATACCTTTA+AGG + chr4_4:49506587-49506606 None:intergenic 25.0%
!!! AAAGGTATTAAAACTTTGCA+TGG - chr4_4:49506588-49506607 Msa0685390:intron 25.0%
!! ATTAACTTGATCCATACTTA+AGG - chr4_4:49506776-49506795 Msa0685390:CDS 25.0%
! TGAGTGAATGGAATATGTTT+TGG + chr4_4:49499003-49499022 None:intergenic 30.0%
! ATTGAAAAAGTGTGAGTGAA+TGG + chr4_4:49499015-49499034 None:intergenic 30.0%
!! TAGTCAAAAGTATTGATGGA+TGG + chr4_4:49499072-49499091 None:intergenic 30.0%
!!! TTTTGGCTTGAAAAACCAAA+AGG - chr4_4:49499093-49499112 Msa0685390:three_prime_UTR 30.0%
!! TTTGGCTTGAAAAACCAAAA+GGG - chr4_4:49499094-49499113 Msa0685390:three_prime_UTR 30.0%
AGCAAAAACAAAACCATACT+TGG + chr4_4:49499372-49499391 None:intergenic 30.0%
!! ACACTTTTGATCGATTCTTT+AGG + chr4_4:49499972-49499991 None:intergenic 30.0%
AAAATTGCAATATTCGGATC+GGG + chr4_4:49500140-49500159 None:intergenic 30.0%
GAAAATTGCAATATTCGGAT+CGG + chr4_4:49500141-49500160 None:intergenic 30.0%
! TTTTGAATTGTGTTTCGAAC+TGG - chr4_4:49500168-49500187 Msa0685390:intron 30.0%
TTCTAACTTTGCAACTTAAG+TGG + chr4_4:49500295-49500314 None:intergenic 30.0%
ATATAACACACAAACTCACA+AGG + chr4_4:49500579-49500598 None:intergenic 30.0%
ATGTCCCATTGATATCAAAT+TGG - chr4_4:49500597-49500616 Msa0685390:CDS 30.0%
AAAAATAGTTTGAGTGTGTG+AGG - chr4_4:49500657-49500676 Msa0685390:CDS 30.0%
AATTTCAATATCGTTTGGTC+CGG - chr4_4:49500801-49500820 Msa0685390:intron 30.0%
ATTATTTGTTCTCTCTTGGT+TGG + chr4_4:49501651-49501670 None:intergenic 30.0%
AACCAAGAGAGAACAAATAA+TGG - chr4_4:49501650-49501669 Msa0685390:intron 30.0%
AACCATTATTTGTTCTCTCT+TGG + chr4_4:49501655-49501674 None:intergenic 30.0%
TGCTTTAATTGTGGAAAGTA+CGG - chr4_4:49501674-49501693 Msa0685390:intron 30.0%
TGATTGCAGATATAAACATC+AGG - chr4_4:49501709-49501728 Msa0685390:intron 30.0%
ATATAAACATCAGGCAAACA+TGG - chr4_4:49501718-49501737 Msa0685390:intron 30.0%
AATATTTGGTATTTGGACAC+CGG - chr4_4:49501827-49501846 Msa0685390:intron 30.0%
ACACATATGATTACTACATC+CGG + chr4_4:49501849-49501868 None:intergenic 30.0%
GATGTAGTAATCATATGTGT+GGG - chr4_4:49501849-49501868 Msa0685390:intron 30.0%
TAATCATATGTGTGGGAAAA+AGG - chr4_4:49501856-49501875 Msa0685390:intron 30.0%
! ATTTTCTTCTCTGAACGAAA+CGG - chr4_4:49501883-49501902 Msa0685390:intron 30.0%
CTTTCAATCTGATAGCAATT+TGG + chr4_4:49501964-49501983 None:intergenic 30.0%
ATTGCTATCAGATTGAAAGA+TGG - chr4_4:49501965-49501984 Msa0685390:intron 30.0%
AAATGGAAGATTCATCACAA+AGG - chr4_4:49502117-49502136 Msa0685390:intron 30.0%
! GATCATGTTGAATTTTCAGA+GGG + chr4_4:49502168-49502187 None:intergenic 30.0%
! TGATCATGTTGAATTTTCAG+AGG + chr4_4:49502169-49502188 None:intergenic 30.0%
!! TTTGGTCACTTTCATTTTTC+TGG - chr4_4:49502244-49502263 Msa0685390:intron 30.0%
TCACGAAAAGAATATGTTTC+TGG - chr4_4:49502280-49502299 Msa0685390:intron 30.0%
TGTTCATTCAGATTTGTGTT+CGG - chr4_4:49502417-49502436 Msa0685390:intron 30.0%
ACAAATTTCTTTGAGCAACA+TGG - chr4_4:49502640-49502659 Msa0685390:intron 30.0%
AAGAAAGAACAGAACAATCA+TGG - chr4_4:49502717-49502736 Msa0685390:intron 30.0%
AAATTCCTTTGGCATTTGTT+TGG + chr4_4:49502767-49502786 None:intergenic 30.0%
! AACAAATGCCAAAGGAATTT+TGG - chr4_4:49502767-49502786 Msa0685390:intron 30.0%
! ACAAATGCCAAAGGAATTTT+GGG - chr4_4:49502768-49502787 Msa0685390:intron 30.0%
!! CTGCAGTTTATATTTTGAAC+AGG - chr4_4:49502806-49502825 Msa0685390:intron 30.0%
!! TTCTCTTGAACACTTTTTGT+TGG + chr4_4:49502835-49502854 None:intergenic 30.0%
AACTCCAAATGATTATGAAG+AGG - chr4_4:49503131-49503150 Msa0685390:intron 30.0%
!! TATCAACTTTGCCTTATTTG+CGG - chr4_4:49503302-49503321 Msa0685390:intron 30.0%
AAATTGATCGCTATAAAGCA+AGG - chr4_4:49503502-49503521 Msa0685390:intron 30.0%
AATTGTATCTAATCTCGCAA+CGG + chr4_4:49503586-49503605 None:intergenic 30.0%
GTTAAGTCTGCATTTCTTAA+TGG - chr4_4:49503660-49503679 Msa0685390:intron 30.0%
TGCATTTCTTAATGGTACTT+TGG - chr4_4:49503668-49503687 Msa0685390:intron 30.0%
TACATCAAAATCATTGATCC+TGG - chr4_4:49503870-49503889 Msa0685390:intron 30.0%
AAAGATGATTGCTGAATTCA+GGG - chr4_4:49503950-49503969 Msa0685390:intron 30.0%
!!! ATGTTTTGAAATGACAGACT+TGG - chr4_4:49503986-49504005 Msa0685390:intron 30.0%
!!! TGTTTTGAAATGACAGACTT+GGG - chr4_4:49503987-49504006 Msa0685390:intron 30.0%
!! AGCTTTAACTTTTCTTCAAC+GGG + chr4_4:49504140-49504159 None:intergenic 30.0%
!! CAGCTTTAACTTTTCTTCAA+CGG + chr4_4:49504141-49504160 None:intergenic 30.0%
AAGAGAAAGAGATGGTAAAA+GGG - chr4_4:49504163-49504182 Msa0685390:intron 30.0%
AATAATGATGTGAAGCTTGT+TGG - chr4_4:49504377-49504396 Msa0685390:intron 30.0%
TTGGATATACAGATAGTGAT+TGG - chr4_4:49504396-49504415 Msa0685390:intron 30.0%
TGGATATACAGATAGTGATT+GGG - chr4_4:49504397-49504416 Msa0685390:intron 30.0%
TTATCACAATATATCTCCGT+AGG + chr4_4:49504623-49504642 None:intergenic 30.0%
! AGCAAAAATCCAGTTTTTCA+TGG - chr4_4:49504662-49504681 Msa0685390:intron 30.0%
! AAAATCCAGTTTTTCATGGA+CGG - chr4_4:49504666-49504685 Msa0685390:intron 30.0%
! CTTTCTCATCAATTAGTTCT+CGG + chr4_4:49504724-49504743 None:intergenic 30.0%
ACTAATTGATGAGAAAGAAG+TGG - chr4_4:49504727-49504746 Msa0685390:intron 30.0%
AATGATGCAAGCTTGATTTA+AGG - chr4_4:49504844-49504863 Msa0685390:intron 30.0%
ATGATGCAAGCTTGATTTAA+GGG - chr4_4:49504845-49504864 Msa0685390:intron 30.0%
TTCTAACTTTGCAACTTAAG+TGG + chr4_4:49500295-49500314 None:intergenic 30.0%
ATATAACACACAAACTCACA+AGG + chr4_4:49500579-49500598 None:intergenic 30.0%
TGTTCAGCAATGATATCAAT+GGG + chr4_4:49505257-49505276 None:intergenic 30.0%
ATGTTCAGCAATGATATCAA+TGG + chr4_4:49505258-49505277 None:intergenic 30.0%
ATTGATATCATTGCTGAACA+TGG - chr4_4:49505257-49505276 Msa0685390:intron 30.0%
!!! ATGGATGATTTTACTGACTT+TGG - chr4_4:49505276-49505295 Msa0685390:intron 30.0%
TCAACACAAAATATGAAAGC+TGG + chr4_4:49505328-49505347 None:intergenic 30.0%
GATGATTTCTTGGAATTAAC+TGG - chr4_4:49505580-49505599 Msa0685390:intron 30.0%
GAGATTATGATTTATGATGG+AGG - chr4_4:49505694-49505713 Msa0685390:intron 30.0%
! TGTTGATAAATGATCTGTGA+AGG - chr4_4:49505778-49505797 Msa0685390:intron 30.0%
! TTGCTTCTGAAAAGAAAGAA+AGG + chr4_4:49506163-49506182 None:intergenic 30.0%
! TAAGATTTAGAGGCTTTGTA+AGG + chr4_4:49506312-49506331 None:intergenic 30.0%
ATATGTCTTACAAAAAGCCT+AGG - chr4_4:49506331-49506350 Msa0685390:intron 30.0%
AGCGTAGAATTATACCTTAA+AGG - chr4_4:49506570-49506589 Msa0685390:intron 30.0%
GATCATTGTTTACAATCTAG+AGG - chr4_4:49506618-49506637 Msa0685390:intron 30.0%
ATAAACTACCCAATATTGCA+TGG + chr4_4:49506656-49506675 None:intergenic 30.0%
TTATGTTGTGTATGGTACTA+TGG - chr4_4:49506672-49506691 Msa0685390:CDS 30.0%
! TGTTATCTTGAAGACCATTT+TGG - chr4_4:49506696-49506715 Msa0685390:CDS 30.0%
GTGTAGCAATTATACCAAAA+TGG + chr4_4:49506713-49506732 None:intergenic 30.0%
CAAAACTGCTATAAGTACTA+TGG - chr4_4:49506808-49506827 Msa0685390:CDS 30.0%
! TTCTTTTGTCATGTGATACA+TGG + chr4_4:49507047-49507066 None:intergenic 30.0%
AGTGTGTGAATGAGAAGATA+AGG + chr4_4:49498962-49498981 None:intergenic 35.0%
CTTGAAAAACCAAAAGGGTT+TGG - chr4_4:49499099-49499118 Msa0685390:three_prime_UTR 35.0%
ACTTGGCAGATATCACATTT+AGG + chr4_4:49499355-49499374 None:intergenic 35.0%
AATGTGATATCTGCCAAGTA+TGG - chr4_4:49499356-49499375 Msa0685390:three_prime_UTR 35.0%
CCGGTGAAAATTGCAATATT+CGG + chr4_4:49500146-49500165 None:intergenic 35.0%
! CCGAATATTGCAATTTTCAC+CGG - chr4_4:49500143-49500162 Msa0685390:intron 35.0%
! CGAATATTGCAATTTTCACC+GGG - chr4_4:49500144-49500163 Msa0685390:intron 35.0%
CGAAACACAATTCAAAATCC+CGG + chr4_4:49500165-49500184 None:intergenic 35.0%
TTGCATAAAAGAGCAACACA+TGG - chr4_4:49500379-49500398 Msa0685390:intron 35.0%
AAGAGCAACACATGGATAAT+AGG - chr4_4:49500387-49500406 Msa0685390:intron 35.0%
TATCAAATTGGTATCAGAGC+AGG - chr4_4:49500609-49500628 Msa0685390:CDS 35.0%
! TTCAGAATTCAATTTGGGAC+CGG + chr4_4:49500823-49500842 None:intergenic 35.0%
ATCTTAAAGCTCACAACATC+TGG - chr4_4:49500880-49500899 Msa0685390:intron 35.0%
GCACTATCACAAATTCTTCA+AGG - chr4_4:49500966-49500985 Msa0685390:intron 35.0%
ATATTGAAGCTGTCACACAA+AGG - chr4_4:49501050-49501069 Msa0685390:intron 35.0%
TAAACCTTGTCAACAAGATG+AGG - chr4_4:49501177-49501196 Msa0685390:intron 35.0%
AAACCTTGTCAACAAGATGA+GGG - chr4_4:49501178-49501197 Msa0685390:intron 35.0%
GGTGTATGGAGAAAATATTC+CGG - chr4_4:49501199-49501218 Msa0685390:intron 35.0%
AGAAAATATTCCGGATAGCA+AGG - chr4_4:49501208-49501227 Msa0685390:intron 35.0%
ACCACATGATCAAACTTCAT+CGG + chr4_4:49501260-49501279 None:intergenic 35.0%
AGAGAAGACTGAAAAAGTGA+AGG - chr4_4:49501367-49501386 Msa0685390:intron 35.0%
GTACGTGACAATTTCAACAA+TGG - chr4_4:49501458-49501477 Msa0685390:intron 35.0%
AATTTCAACAATGGAGGAAG+AGG - chr4_4:49501467-49501486 Msa0685390:intron 35.0%
AATCAATCACATCAAGGAAG+AGG - chr4_4:49501578-49501597 Msa0685390:intron 35.0%
! GCTTTAATTGTGGAAAGTAC+GGG - chr4_4:49501675-49501694 Msa0685390:intron 35.0%
GAGAATTCATATCAATCCTC+TGG - chr4_4:49501743-49501762 Msa0685390:intron 35.0%
GGATGTAGTAATCATATGTG+TGG - chr4_4:49501848-49501867 Msa0685390:intron 35.0%
GTAAAATCTACCGTGAAGTT+TGG - chr4_4:49501905-49501924 Msa0685390:intron 35.0%
AATATTCCAATTGAGGGGAA+AGG - chr4_4:49501938-49501957 Msa0685390:intron 35.0%
TACAACATGCAGATTCACAA+AGG - chr4_4:49502073-49502092 Msa0685390:intron 35.0%
TGCACTTTGATCGATAGAAA+TGG - chr4_4:49502100-49502119 Msa0685390:intron 35.0%
! GTTGAATTTTCAGAGGGAAT+AGG + chr4_4:49502162-49502181 None:intergenic 35.0%
GGAATTATTGAACTCAAGCA+AGG + chr4_4:49502196-49502215 None:intergenic 35.0%
! TTCCAAATGATGATTGGTTG+TGG - chr4_4:49502212-49502231 Msa0685390:intron 35.0%
AATCTGAATGAACAATCTCC+AGG + chr4_4:49502411-49502430 None:intergenic 35.0%
!! ATGATTTTAGCAGAAAGGCT+TGG - chr4_4:49502488-49502507 Msa0685390:intron 35.0%
!! TGATTTTAGCAGAAAGGCTT+GGG - chr4_4:49502489-49502508 Msa0685390:intron 35.0%
! GAATGCTTTGAATGTCTTGA+AGG + chr4_4:49502551-49502570 None:intergenic 35.0%
!! ATTTTGTTGAGGAGTGTATC+TGG + chr4_4:49502686-49502705 None:intergenic 35.0%
AGATACACTCCTCAACAAAA+TGG - chr4_4:49502685-49502704 Msa0685390:intron 35.0%
! TCAACTACTCCATTTTGTTG+AGG + chr4_4:49502697-49502716 None:intergenic 35.0%
GAACAGAACAATCATGGATA+TGG - chr4_4:49502723-49502742 Msa0685390:intron 35.0%
!! ATTAGACACCTTCGAGTTTT+TGG - chr4_4:49502892-49502911 Msa0685390:intron 35.0%
CAATACATCCAAAAACTCGA+AGG + chr4_4:49502903-49502922 None:intergenic 35.0%
TGGCTACATCTCAAATTCAA+AGG - chr4_4:49502990-49503009 Msa0685390:intron 35.0%
TTACAATCCAGAGACCAAAA+AGG - chr4_4:49503023-49503042 Msa0685390:intron 35.0%
!! ATAATCACCTTTTTGGTCTC+TGG + chr4_4:49503033-49503052 None:intergenic 35.0%
! TCTGCTGATAATCACCTTTT+TGG + chr4_4:49503040-49503059 None:intergenic 35.0%
AGAGATGTGACATTTGATGA+AGG - chr4_4:49503057-49503076 Msa0685390:intron 35.0%
TTGGTCATCAAAGTCACAAA+AGG - chr4_4:49503092-49503111 Msa0685390:intron 35.0%
ATCAAAGTCACAAAAGGAGA+AGG - chr4_4:49503098-49503117 Msa0685390:intron 35.0%
TCCAAATGATTATGAAGAGG+AGG - chr4_4:49503134-49503153 Msa0685390:intron 35.0%
TTCATCGGATGGATCATTAT+CGG + chr4_4:49503277-49503296 None:intergenic 35.0%
! TTGATAATCTCTTCATCGGA+TGG + chr4_4:49503288-49503307 None:intergenic 35.0%
AAAGGCTACAAACAAAAACC+AGG - chr4_4:49503534-49503553 Msa0685390:intron 35.0%
ATTGTATCTAATCTCGCAAC+GGG + chr4_4:49503585-49503604 None:intergenic 35.0%
CACTCTCAGCTCAAAATAAT+TGG - chr4_4:49503619-49503638 Msa0685390:intron 35.0%
AGGATATGTAGTTAGAGGAA+AGG - chr4_4:49503719-49503738 Msa0685390:intron 35.0%
! ATCTTTTTGTACCATGCTCT+TGG + chr4_4:49503795-49503814 None:intergenic 35.0%
ATATCAGATCATCGACATAG+AGG + chr4_4:49503914-49503933 None:intergenic 35.0%
CAAGAGAAAGAGATGGTAAA+AGG - chr4_4:49504162-49504181 Msa0685390:intron 35.0%
TGAGATATTTGACTGCAACA+AGG - chr4_4:49504222-49504241 Msa0685390:intron 35.0%
ACAAGGCCAGATATAGTATA+TGG - chr4_4:49504239-49504258 Msa0685390:intron 35.0%
CCAACTCCATATACTATATC+TGG + chr4_4:49504248-49504267 None:intergenic 35.0%
CCAGATATAGTATATGGAGT+TGG - chr4_4:49504245-49504264 Msa0685390:intron 35.0%
TGGTTTACTTAGCAGATACA+TGG - chr4_4:49504265-49504284 Msa0685390:intron 35.0%
TTTACTTAGCAGATACATGG+AGG - chr4_4:49504268-49504287 Msa0685390:intron 35.0%
!!! CTGACCGAAGGAATTTTTTA+TGG - chr4_4:49504350-49504369 Msa0685390:intron 35.0%
! AAACAAGAAAAAGCACGTCA+GGG - chr4_4:49504432-49504451 Msa0685390:intron 35.0%
!! TAAAATGACTCGGTCTTCAA+CGG + chr4_4:49504803-49504822 None:intergenic 35.0%
TTGCATAAAAGAGCAACACA+TGG - chr4_4:49500379-49500398 Msa0685390:intron 35.0%
AAGAGCAACACATGGATAAT+AGG - chr4_4:49500387-49500406 Msa0685390:intron 35.0%
GGCCTTCATCTTATAACTAT+AGG - chr4_4:49505297-49505316 Msa0685390:intron 35.0%
!! TTGGCTTTTCTCATTGTCTT+TGG + chr4_4:49505470-49505489 None:intergenic 35.0%
TAAAGTTGTCTTACCTTGTC+TGG + chr4_4:49505616-49505635 None:intergenic 35.0%
! TTCTTTTCAGAAGCAATCCA+TGG - chr4_4:49506167-49506186 Msa0685390:intron 35.0%
TGGGTAGTTTATGTTGTGTA+TGG - chr4_4:49506664-49506683 Msa0685390:CDS 35.0%
TTGGTATAATTGCTACACTG+AGG - chr4_4:49506715-49506734 Msa0685390:CDS 35.0%
TGGTATAATTGCTACACTGA+GGG - chr4_4:49506716-49506735 Msa0685390:CDS 35.0%
TGCTCTATGTTCCTTAAGTA+TGG + chr4_4:49506790-49506809 None:intergenic 35.0%
! CACACTCGCTATATTTTGCA+TGG - chr4_4:49498976-49498995 Msa0685390:three_prime_UTR 40.0%
! TATTGGAAGAGAAGAGGTGT+TGG - chr4_4:49499151-49499170 Msa0685390:three_prime_UTR 40.0%
!! AAGAGGTGTTGGATTTGTGA+AGG - chr4_4:49499162-49499181 Msa0685390:three_prime_UTR 40.0%
GATGATGTTGTGTTTGTAGC+AGG - chr4_4:49499877-49499896 Msa0685390:intron 40.0%
!! TAAGGGTTAGTCTAGTGGTA+TGG + chr4_4:49499931-49499950 None:intergenic 40.0%
ATACCACTAGACTAACCCTT+AGG - chr4_4:49499930-49499949 Msa0685390:intron 40.0%
TACCACTAGACTAACCCTTA+GGG - chr4_4:49499931-49499950 Msa0685390:intron 40.0%
!! GATTCTCTAAAGCCATTGCA+CGG + chr4_4:49500118-49500137 None:intergenic 40.0%
! GTACAAGCATGGCCTTTTAT+AGG + chr4_4:49500482-49500501 None:intergenic 40.0%
ATGTCACAATGGTACAAGCA+TGG + chr4_4:49500493-49500512 None:intergenic 40.0%
AATTGGTATCAGAGCAGGTT+AGG - chr4_4:49500614-49500633 Msa0685390:CDS 40.0%
AAAAATAGTCCGAGTGTGTG+AGG - chr4_4:49500715-49500734 Msa0685390:intron 40.0%
! TCTTTTGTTCCTCACACACT+CGG + chr4_4:49500727-49500746 None:intergenic 40.0%
! TGATGAACTTGCTCGTAGAA+AGG - chr4_4:49500935-49500954 Msa0685390:intron 40.0%
AAATGCGAAGACTTCGAAAG+AGG - chr4_4:49501019-49501038 Msa0685390:intron 40.0%
CTCTGCGTAGAGAATATGAA+AGG - chr4_4:49501105-49501124 Msa0685390:intron 40.0%
!! AATGTCCAGTTCTGAAACAG+TGG - chr4_4:49501133-49501152 Msa0685390:intron 40.0%
TTGTTCCACTGTTTCAGAAC+TGG + chr4_4:49501141-49501160 None:intergenic 40.0%
AAATATTCCGGATAGCAAGG+TGG - chr4_4:49501211-49501230 Msa0685390:intron 40.0%
ATGATCAAACTTCATCGGCA+TGG + chr4_4:49501255-49501274 None:intergenic 40.0%
GAAGACTGAAAAAGTGAAGG+AGG - chr4_4:49501370-49501389 Msa0685390:intron 40.0%
GTTGAAATTGTCACGTACTC+TGG + chr4_4:49501456-49501475 None:intergenic 40.0%
CGTGACAATTTCAACAATGG+AGG - chr4_4:49501461-49501480 Msa0685390:intron 40.0%
AGAGGAAATTTCAGAGGTAG+AGG - chr4_4:49501485-49501504 Msa0685390:intron 40.0%
AACGTGGCAACTTCAATCAA+TGG - chr4_4:49501531-49501550 Msa0685390:intron 40.0%
! GGAAGAGGTGGAAACAATTT+TGG - chr4_4:49501593-49501612 Msa0685390:intron 40.0%
AAGAGATTGTGATGAAGACC+AGG + chr4_4:49502025-49502044 None:intergenic 40.0%
TCATCACAATCTCTTGAGCA+TGG - chr4_4:49502030-49502049 Msa0685390:intron 40.0%
CATCACAATCTCTTGAGCAT+GGG - chr4_4:49502031-49502050 Msa0685390:intron 40.0%
! GAATTTTCAGAGGGAATAGG+CGG + chr4_4:49502159-49502178 None:intergenic 40.0%
TGCCACAACCAATCATCATT+TGG + chr4_4:49502217-49502236 None:intergenic 40.0%
CATGTTGTGAACATTCCAAG+TGG - chr4_4:49502307-49502326 Msa0685390:intron 40.0%
GTATGCGAGACATGTCAAAT+TGG - chr4_4:49502331-49502350 Msa0685390:intron 40.0%
CATAGAGAATCATTGCCAAC+CGG - chr4_4:49502361-49502380 Msa0685390:intron 40.0%
ATAAAATACCTGCAACCACC+AGG + chr4_4:49502457-49502476 None:intergenic 40.0%
! CAAGACATTCAAAGCATTCG+TGG - chr4_4:49502552-49502571 Msa0685390:intron 40.0%
GCATTCGTGGAAAAACAAAG+TGG - chr4_4:49502565-49502584 Msa0685390:intron 40.0%
ATCTGGTGGTTAACTGATGT+TGG + chr4_4:49502669-49502688 None:intergenic 40.0%
GAAAGCCAAACAAATGCCAA+AGG - chr4_4:49502759-49502778 Msa0685390:intron 40.0%
!! ACTCGAAGGTGTCTAATTGA+GGG + chr4_4:49502889-49502908 None:intergenic 40.0%
!! AACTCGAAGGTGTCTAATTG+AGG + chr4_4:49502890-49502909 None:intergenic 40.0%
GGCGAGAGATGTATCTTTAT+TGG - chr4_4:49502970-49502989 Msa0685390:intron 40.0%
GATGTGACATTTGATGAAGG+AGG - chr4_4:49503060-49503079 Msa0685390:intron 40.0%
CATTTGATGAAGGAGGAATG+TGG - chr4_4:49503067-49503086 Msa0685390:intron 40.0%
ATGAAGGAGGAATGTGGAAT+TGG - chr4_4:49503073-49503092 Msa0685390:intron 40.0%
GCCTCCTCTTCATAATCATT+TGG + chr4_4:49503138-49503157 None:intergenic 40.0%
!! TTTGATGTTTCTGGCTCATC+AGG + chr4_4:49503198-49503217 None:intergenic 40.0%
TGTGCTCTGTTTGATGTTTC+TGG + chr4_4:49503207-49503226 None:intergenic 40.0%
GCAGCTTCTTCAAAAGTAAC+CGG + chr4_4:49503336-49503355 None:intergenic 40.0%
!!! GTTACTTTTGAAGAAGCTGC+TGG - chr4_4:49503336-49503355 Msa0685390:intron 40.0%
! AAGCTGCTGGTGATGAAAAT+TGG - chr4_4:49503349-49503368 Msa0685390:intron 40.0%
!! CCTATTGACTTCTTGTTTGC+TGG + chr4_4:49503441-49503460 None:intergenic 40.0%
CCAGCAAACAAGAAGTCAAT+AGG - chr4_4:49503438-49503457 Msa0685390:intron 40.0%
AGAAGTCAATAGGAGTGAAG+TGG - chr4_4:49503448-49503467 Msa0685390:intron 40.0%
GAAGTCAATAGGAGTGAAGT+GGG - chr4_4:49503449-49503468 Msa0685390:intron 40.0%
AAGACAAAGTACAAACCCAG+TGG - chr4_4:49503477-49503496 Msa0685390:intron 40.0%
TAGCGATCAATTTCACCACT+GGG + chr4_4:49503495-49503514 None:intergenic 40.0%
ATAGCGATCAATTTCACCAC+TGG + chr4_4:49503496-49503515 None:intergenic 40.0%
TGATCGCTATAAAGCAAGGT+TGG - chr4_4:49503506-49503525 Msa0685390:intron 40.0%
AGCATTATATGGCTTGAAGC+AGG - chr4_4:49503767-49503786 Msa0685390:intron 40.0%
ATGTAGAGTGTGTGCTCAAA+TGG + chr4_4:49503855-49503874 None:intergenic 40.0%
CACACAATAAGAACATCTCC+AGG + chr4_4:49503891-49503910 None:intergenic 40.0%
GTCGATGATCTGATATTCAC+CGG - chr4_4:49503918-49503937 Msa0685390:intron 40.0%
! GGCCTAATGTCCTATTTTCT+CGG - chr4_4:49504008-49504027 Msa0685390:intron 40.0%
TGCCGAGAAAATAGGACATT+AGG + chr4_4:49504013-49504032 None:intergenic 40.0%
! TAACTTTTCTTCAACGGGTG+TGG + chr4_4:49504135-49504154 None:intergenic 40.0%
AAGCTGACAAGAGAAAGAGA+TGG - chr4_4:49504155-49504174 Msa0685390:intron 40.0%
!! ATTAAAGGTACTCTGACCGA+AGG - chr4_4:49504338-49504357 Msa0685390:intron 40.0%
TATACAGATAGTGATTGGGC+AGG - chr4_4:49504401-49504420 Msa0685390:intron 40.0%
! GAAACAAGAAAAAGCACGTC+AGG - chr4_4:49504431-49504450 Msa0685390:intron 40.0%
TCAGAAGCAGAATACTCCTA+CGG - chr4_4:49504604-49504623 Msa0685390:intron 40.0%
ATGCAAGCTTGATTTAAGGG+AGG - chr4_4:49504848-49504867 Msa0685390:intron 40.0%
! GTACAAGCATGGCCTTTTAT+AGG + chr4_4:49500482-49500501 None:intergenic 40.0%
ATGTCACAATGGTACAAGCA+TGG + chr4_4:49500493-49500512 None:intergenic 40.0%
GATGAACCAATTCATGTAGC+TGG - chr4_4:49505376-49505395 Msa0685390:intron 40.0%
AGACTACCAGCTACATGAAT+TGG + chr4_4:49505385-49505404 None:intergenic 40.0%
! CTGGATTAGATGGTTCAACT+TGG + chr4_4:49505489-49505508 None:intergenic 40.0%
!! TTGGGCTGTTGATGATTTCT+TGG - chr4_4:49505570-49505589 Msa0685390:intron 40.0%
ATCTGTGAAGGAAACCAACT+TGG - chr4_4:49505790-49505809 Msa0685390:intron 40.0%
TCTGTGAAGGAAACCAACTT+GGG - chr4_4:49505791-49505810 Msa0685390:intron 40.0%
CCAAACTAACCCACCAAAAT+GGG + chr4_4:49505890-49505909 None:intergenic 40.0%
ACTTCGAACCATATTTGCAC+AGG - chr4_4:49506037-49506056 Msa0685390:intron 40.0%
AACCATATTTGCACAGGCAA+TGG - chr4_4:49506043-49506062 Msa0685390:intron 40.0%
TACCATTGCCTGTGCAAATA+TGG + chr4_4:49506048-49506067 None:intergenic 40.0%
TATTTGCACAGGCAATGGTA+AGG - chr4_4:49506048-49506067 Msa0685390:intron 40.0%
TTTCAATGACCAGTTTCCTC+AGG - chr4_4:49506227-49506246 Msa0685390:intron 40.0%
CATCATCATCGTCTTCATGT+CGG + chr4_4:49506365-49506384 None:intergenic 40.0%
ACAGATTCATGGAACAGAAC+AGG + chr4_4:49506434-49506453 None:intergenic 40.0%
CTGTTCCATGAATCTGTAGA+TGG - chr4_4:49506437-49506456 Msa0685390:intron 40.0%
CTCATCCATCTACAGATTCA+TGG + chr4_4:49506445-49506464 None:intergenic 40.0%
ACTACCCAATATTGCATGGA+GGG + chr4_4:49506652-49506671 None:intergenic 40.0%
AACTACCCAATATTGCATGG+AGG + chr4_4:49506653-49506672 None:intergenic 40.0%
!! AGCTTGCTAGCAAGCATCAA+AGG - chr4_4:49499299-49499318 Msa0685390:three_prime_UTR 45.0%
CAGGAATCGAACCCTTTCTT+CGG - chr4_4:49499896-49499915 Msa0685390:intron 45.0%
ATGTCCTATTCGTGCCCTAA+GGG + chr4_4:49499948-49499967 None:intergenic 45.0%
AAAGCCATTGCACGGTGTAA+CGG + chr4_4:49500110-49500129 None:intergenic 45.0%
! TTTTGACGCTGACACTTTGC+AGG + chr4_4:49500641-49500660 None:intergenic 45.0%
! TCACAACATCTGGAGCTATG+TGG - chr4_4:49500890-49500909 Msa0685390:intron 45.0%
! GAATTTGTGATAGTGCCAGC+TGG + chr4_4:49500962-49500981 None:intergenic 45.0%
ACACCCTCATCTTGTTGACA+AGG + chr4_4:49501184-49501203 None:intergenic 45.0%
! GTCAACAAGATGAGGGTGTA+TGG - chr4_4:49501185-49501204 Msa0685390:intron 45.0%
GCCGATGAAGTTTGATCATG+TGG - chr4_4:49501256-49501275 Msa0685390:intron 45.0%
GGAGGAAGAGGAAATTTCAG+AGG - chr4_4:49501479-49501498 Msa0685390:intron 45.0%
AATTTCAGAGGTAGAGGTCG+AGG - chr4_4:49501491-49501510 Msa0685390:intron 45.0%
! ACCTTTAGAGGAAGAGAACG+TGG - chr4_4:49501515-49501534 Msa0685390:intron 45.0%
CAATCACATCAAGGAAGAGG+TGG - chr4_4:49501581-49501600 Msa0685390:intron 45.0%
!!! AATTTTGGCTCCAACAACCG+TGG - chr4_4:49501608-49501627 Msa0685390:intron 45.0%
AATAACCTCTTCCTCTGCCA+CGG + chr4_4:49501628-49501647 None:intergenic 45.0%
!! ATTTTGGGAAGACTCACCAG+AGG + chr4_4:49501762-49501781 None:intergenic 45.0%
! ATTTGGCCTTTCCCCTCAAT+TGG + chr4_4:49501947-49501966 None:intergenic 45.0%
ATGGGACAACTGTCAGAGAA+AGG - chr4_4:49502049-49502068 Msa0685390:intron 45.0%
TGGTTGTGGCACATGAGATT+TGG - chr4_4:49502226-49502245 Msa0685390:intron 45.0%
CTTTGCTCTCCAAGACTTTC+CGG + chr4_4:49502383-49502402 None:intergenic 45.0%
TTGGAGAGCAAAGAAACTCC+TGG - chr4_4:49502390-49502409 Msa0685390:intron 45.0%
TCGGTTGAAATACCAACACC+TGG - chr4_4:49502436-49502455 Msa0685390:intron 45.0%
GTTGAAATACCAACACCTGG+TGG - chr4_4:49502439-49502458 Msa0685390:intron 45.0%
! AAAGCACTCAGAACAGACAG+AGG - chr4_4:49502598-49502617 Msa0685390:intron 45.0%
! CAAAGAAATTTGTGCCGACG+AGG + chr4_4:49502633-49502652 None:intergenic 45.0%
! TTGTTGAGGAGTGTATCTGG+TGG + chr4_4:49502683-49502702 None:intergenic 45.0%
GCTTCTGCCCAAAATTCCTT+TGG + chr4_4:49502778-49502797 None:intergenic 45.0%
TCGACTGCAAGATTGTGTCT+TGG - chr4_4:49503248-49503267 Msa0685390:intron 45.0%
CGACTGCAAGATTGTGTCTT+GGG - chr4_4:49503249-49503268 Msa0685390:intron 45.0%
! CTTATTTGCGGATTGTGAGC+CGG - chr4_4:49503314-49503333 Msa0685390:intron 45.0%
TCGCTATAAAGCAAGGTTGG+TGG - chr4_4:49503509-49503528 Msa0685390:intron 45.0%
!! AAAGCAAGGTTGGTGGCTAA+AGG - chr4_4:49503516-49503535 Msa0685390:intron 45.0%
CCTCTAACTACATATCCTGC+AGG + chr4_4:49503717-49503736 None:intergenic 45.0%
CCTGCAGGATATGTAGTTAG+AGG - chr4_4:49503714-49503733 Msa0685390:intron 45.0%
GATGATTGCTGAATTCAGGG+AGG - chr4_4:49503953-49503972 Msa0685390:intron 45.0%
! GTCCTATTTTCTCGGCATTG+AGG - chr4_4:49504016-49504035 Msa0685390:intron 45.0%
GACCTCAATGCCGAGAAAAT+AGG + chr4_4:49504021-49504040 None:intergenic 45.0%
CATTGAGGTCGTTCAACAGA+AGG - chr4_4:49504031-49504050 Msa0685390:intron 45.0%
TCTTCAACGGGTGTGGAAAT+TGG + chr4_4:49504128-49504147 None:intergenic 45.0%
GTCACTTGCAAGGAGTCAAA+AGG - chr4_4:49504303-49504322 Msa0685390:intron 45.0%
TGGGAACTGGTGCAATATCA+TGG - chr4_4:49504468-49504487 Msa0685390:intron 45.0%
CACTGTTTGAGTAGCACAAC+TGG + chr4_4:49504555-49504574 None:intergenic 45.0%
! GTTGTGCTACTCAAACAGTG+TGG - chr4_4:49504555-49504574 Msa0685390:intron 45.0%
TTGGACCGTCCATGAAAAAC+TGG + chr4_4:49504674-49504693 None:intergenic 45.0%
CTGCAATCTGCTCTTCAGTT+GGG + chr4_4:49504766-49504785 None:intergenic 45.0%
TCTGCAATCTGCTCTTCAGT+TGG + chr4_4:49504767-49504786 None:intergenic 45.0%
AGTCCTTACAGAACAGTGCT+CGG + chr4_4:49505354-49505373 None:intergenic 45.0%
CATGTAGCTGGTAGTCTTTC+TGG - chr4_4:49505388-49505407 Msa0685390:intron 45.0%
AACTAGAAGCCAAAGCCACA+CGG + chr4_4:49505444-49505463 None:intergenic 45.0%
! TGTTGCGTGTCTGGATTAGA+TGG + chr4_4:49505499-49505518 None:intergenic 45.0%
TGAGGAGGAGAAACTTTGAC+GGG + chr4_4:49505526-49505545 None:intergenic 45.0%
CTGAGGAGGAGAAACTTTGA+CGG + chr4_4:49505527-49505546 None:intergenic 45.0%
GAAATCATCAACAGCCCAAG+AGG + chr4_4:49505569-49505588 None:intergenic 45.0%
!! TGGCTTTGATTCACCAGACA+AGG - chr4_4:49505600-49505619 Msa0685390:intron 45.0%
TGAAGGAAACCAACTTGGGT+TGG - chr4_4:49505795-49505814 Msa0685390:intron 45.0%
ATCGAACATGTGACCTTGAG+AGG + chr4_4:49505856-49505875 None:intergenic 45.0%
TAACCCACCAAAATGGGTAC+CGG + chr4_4:49505884-49505903 None:intergenic 45.0%
!!! CCCATTTTGGTGGGTTAGTT+TGG - chr4_4:49505887-49505906 Msa0685390:intron 45.0%
GCCAAACTAACCCACCAAAA+TGG + chr4_4:49505891-49505910 None:intergenic 45.0%
!! GGGTTAGTTTGGCTCTATGA+AGG - chr4_4:49505898-49505917 Msa0685390:intron 45.0%
TACACACTAACTCTGCCGTT+TGG - chr4_4:49505977-49505996 Msa0685390:intron 45.0%
CAGAAGCAATCCATGGAGTT+TGG - chr4_4:49506174-49506193 Msa0685390:intron 45.0%
TTCAAGCTCTCCAAACTCCA+TGG + chr4_4:49506187-49506206 None:intergenic 45.0%
TGGAGTTTGGAGAGCTTGAA+TGG - chr4_4:49506187-49506206 Msa0685390:intron 45.0%
TGGAGAGCTTGAATGGCTAT+CGG - chr4_4:49506194-49506213 Msa0685390:intron 45.0%
AATGACCAGTTTCCTCAGGA+AGG - chr4_4:49506231-49506250 Msa0685390:intron 45.0%
CTAAACCTTCCTGAGGAAAC+TGG + chr4_4:49506239-49506258 None:intergenic 45.0%
GCATGCATTACTGGAAGTTG+CGG + chr4_4:49506276-49506295 None:intergenic 45.0%
CAACTTCCAGTAATGCATGC+TGG - chr4_4:49506276-49506295 Msa0685390:intron 45.0%
TCATGTCGGACTTCAATCCT+AGG + chr4_4:49506351-49506370 None:intergenic 45.0%
! CGATGATGATGAGCACTTCA+TGG - chr4_4:49506374-49506393 Msa0685390:intron 45.0%
ATGGAACAGAACAGGTGAGA+TGG + chr4_4:49506426-49506445 None:intergenic 45.0%
TCACACCCTCCATGCAATAT+TGG - chr4_4:49506644-49506663 Msa0685390:intron 45.0%
CACACCCTCCATGCAATATT+GGG - chr4_4:49506645-49506664 Msa0685390:CDS 45.0%
!!! ATTGTTTTAATAAATTATTA+TGG - chr4_4:49499617-49499636 Msa0685390:CDS 5.0%
!!! TTGTTTTAATAAATTATTAT+GGG - chr4_4:49499618-49499637 Msa0685390:CDS 5.0%
GTGTGAGAAAGCTCCTGCTA+CGG - chr4_4:49499210-49499229 Msa0685390:three_prime_UTR 50.0%
GCACAACAAATCACCGTAGC+AGG + chr4_4:49499226-49499245 None:intergenic 50.0%
GGACTGAGACACCGAAGAAA+GGG + chr4_4:49499910-49499929 None:intergenic 50.0%
TGGACTGAGACACCGAAGAA+AGG + chr4_4:49499911-49499930 None:intergenic 50.0%
!! TGCCCTAAGGGTTAGTCTAG+TGG + chr4_4:49499936-49499955 None:intergenic 50.0%
CTAACCCTTAGGGCACGAAT+AGG - chr4_4:49499941-49499960 Msa0685390:intron 50.0%
CATGTCCTATTCGTGCCCTA+AGG + chr4_4:49499949-49499968 None:intergenic 50.0%
AAGCCATTGCACGGTGTAAC+GGG + chr4_4:49500109-49500128 None:intergenic 50.0%
! ATCTGGAGCTATGTGGAGTC+TGG - chr4_4:49500897-49500916 Msa0685390:intron 50.0%
! GTGGAGTCTGGTTTGCAACA+AGG - chr4_4:49500909-49500928 Msa0685390:intron 50.0%
! GAAGACTTCGAAAGAGGCGT+GGG - chr4_4:49501025-49501044 Msa0685390:intron 50.0%
TATTCCGGATAGCAAGGTGG+TGG - chr4_4:49501214-49501233 Msa0685390:intron 50.0%
! TTCTCCACCACCTTGCTATC+CGG + chr4_4:49501221-49501240 None:intergenic 50.0%
!! CGACAAGGTATCGGTATCGT+GGG + chr4_4:49501300-49501319 None:intergenic 50.0%
CCACGATACCGATACCTTGT+CGG - chr4_4:49501298-49501317 Msa0685390:intron 50.0%
CTCTGCTACCGACAAGGTAT+CGG + chr4_4:49501309-49501328 None:intergenic 50.0%
TTGTCGGTAGCAGAGTTGCA+GGG - chr4_4:49501314-49501333 Msa0685390:intron 50.0%
!! GAGGTTCACCTGGCTTTTCA+AGG + chr4_4:49501399-49501418 None:intergenic 50.0%
TGGATTCAGCAGCGTTGTTG+AGG + chr4_4:49501418-49501437 None:intergenic 50.0%
GCTGCTGAATCCAGTCAGAT+GGG - chr4_4:49501425-49501444 Msa0685390:intron 50.0%
AGAGGTCGAGGAACCTTTAG+AGG - chr4_4:49501503-49501522 Msa0685390:intron 50.0%
GCCACGTTCTCTTCCTCTAA+AGG + chr4_4:49501519-49501538 None:intergenic 50.0%
CATGTCTCGCATACACCACT+TGG + chr4_4:49502325-49502344 None:intergenic 50.0%
CATTGCCAACCGGAAAGTCT+TGG - chr4_4:49502371-49502390 Msa0685390:intron 50.0%
AGAGGCCAAGAATACCTCGT+CGG - chr4_4:49502616-49502635 Msa0685390:intron 50.0%
! TTGTGCCGACGAGGTATTCT+TGG + chr4_4:49502624-49502643 None:intergenic 50.0%
AGAAGACTCCCGAAGAAGCA+TGG - chr4_4:49502851-49502870 Msa0685390:intron 50.0%
CTTCCACTCCATGCTTCTTC+GGG + chr4_4:49502862-49502881 None:intergenic 50.0%
CCTTCCACTCCATGCTTCTT+CGG + chr4_4:49502863-49502882 None:intergenic 50.0%
! AAGAAGCATGGAGTGGAAGG+AGG - chr4_4:49502863-49502882 Msa0685390:intron 50.0%
! TCAGGCTCATCTGGTTCATC+AGG + chr4_4:49503180-49503199 None:intergenic 50.0%
ACACAATCTTGCAGTCGAGC+TGG + chr4_4:49503246-49503265 None:intergenic 50.0%
CGGCTCACAATCCGCAAATA+AGG + chr4_4:49503316-49503335 None:intergenic 50.0%
GAGGTCGTTCAACAGAAGGA+TGG - chr4_4:49504035-49504054 Msa0685390:intron 50.0%
CCTTGCAAGTGACTAACACG+CGG + chr4_4:49504296-49504315 None:intergenic 50.0%
TCAGGGTACGCGTTTCATCT+GGG - chr4_4:49504449-49504468 Msa0685390:intron 50.0%
TACGCGTTTCATCTGGGAAC+TGG - chr4_4:49504455-49504474 Msa0685390:intron 50.0%
! GCTGTAGAAAGTGCGACAAC+TGG + chr4_4:49504509-49504528 None:intergenic 50.0%
! AGACCGAGCACTGTTCTGTA+AGG - chr4_4:49505348-49505367 Msa0685390:intron 50.0%
! AAACTAGGCACTTGCTGAGG+AGG + chr4_4:49505541-49505560 None:intergenic 50.0%
TGCCTAGTTTCGCATCCTCT+TGG - chr4_4:49505551-49505570 Msa0685390:intron 50.0%
GCCTAGTTTCGCATCCTCTT+GGG - chr4_4:49505552-49505571 Msa0685390:intron 50.0%
!! ACCAACTTGGGTTGGCTTTG+TGG - chr4_4:49505803-49505822 Msa0685390:intron 50.0%
ACCACAAAGCCAACCCAAGT+TGG + chr4_4:49505807-49505826 None:intergenic 50.0%
!! TTGGGTTGGCTTTGTGGTGT+TGG - chr4_4:49505809-49505828 Msa0685390:intron 50.0%
!! TTGGCTTTGTGGTGTTGGCT+TGG - chr4_4:49505814-49505833 Msa0685390:intron 50.0%
!! TGGCTTTGTGGTGTTGGCTT+GGG - chr4_4:49505815-49505834 Msa0685390:intron 50.0%
GTCACATGTTCGATTCTCCC+CGG - chr4_4:49505862-49505881 Msa0685390:intron 50.0%
! ATTCTCCCCGGTACCCATTT+TGG - chr4_4:49505874-49505893 Msa0685390:intron 50.0%
AACCCACCAAAATGGGTACC+GGG + chr4_4:49505883-49505902 None:intergenic 50.0%
CTTGAATGGCTATCGGATGC+AGG - chr4_4:49506201-49506220 Msa0685390:intron 50.0%
ACACTGCCAGCATGCATTAC+TGG + chr4_4:49506285-49506304 None:intergenic 50.0%
! CACTTCATGGTGCCAGATCT+CGG - chr4_4:49506387-49506406 Msa0685390:intron 50.0%
CTTGTGCTTTAGCCGAGATC+TGG + chr4_4:49506402-49506421 None:intergenic 50.0%
!! TTGCACGGTGTAACGGGTTG+TGG + chr4_4:49500103-49500122 None:intergenic 55.0%
CAACCCGTTACACCGTGCAA+TGG - chr4_4:49500103-49500122 Msa0685390:intron 55.0%
TGCTCGTAGAAAGGACCAGC+TGG - chr4_4:49500944-49500963 Msa0685390:intron 55.0%
CGAAGACTTCGAAAGAGGCG+TGG - chr4_4:49501024-49501043 Msa0685390:intron 55.0%
!! CCGACAAGGTATCGGTATCG+TGG + chr4_4:49501301-49501320 None:intergenic 55.0%
CTGCAACTCTGCTACCGACA+AGG + chr4_4:49501315-49501334 None:intergenic 55.0%
CTTGTCGGTAGCAGAGTTGC+AGG - chr4_4:49501313-49501332 Msa0685390:intron 55.0%
TGTCGGTAGCAGAGTTGCAG+GGG - chr4_4:49501315-49501334 Msa0685390:intron 55.0%
GGAGGAAGCCTTGAAAAGCC+AGG - chr4_4:49501388-49501407 Msa0685390:intron 55.0%
CAGCGTTGTTGAGGTTCACC+TGG + chr4_4:49501409-49501428 None:intergenic 55.0%
CGCTGCTGAATCCAGTCAGA+TGG - chr4_4:49501424-49501443 Msa0685390:intron 55.0%
! TCTGGCTTCACCCATCTGAC+TGG + chr4_4:49501438-49501457 None:intergenic 55.0%
TCTTCCTCTGCCACGGTTGT+TGG + chr4_4:49501621-49501640 None:intergenic 55.0%
AACAACCGTGGCAGAGGAAG+AGG - chr4_4:49501620-49501639 Msa0685390:intron 55.0%
! GGCGACGTTTTCTATGCTCC+TGG - chr4_4:49502004-49502023 Msa0685390:intron 55.0%
GCTCTCCAAGACTTTCCGGT+TGG + chr4_4:49502379-49502398 None:intergenic 55.0%
TACCAACACCTGGTGGTTGC+AGG - chr4_4:49502446-49502465 Msa0685390:intron 55.0%
TACCTGCAACCACCAGGTGT+TGG + chr4_4:49502451-49502470 None:intergenic 55.0%
! ACTCCCGAAGAAGCATGGAG+TGG - chr4_4:49502856-49502875 Msa0685390:intron 55.0%
! CCGAAGAAGCATGGAGTGGA+AGG - chr4_4:49502860-49502879 Msa0685390:intron 55.0%
! TCTGGCTCATCAGGCTCATC+TGG + chr4_4:49503189-49503208 None:intergenic 55.0%
GTGTATGTTGAGCAGCCTGC+AGG - chr4_4:49503699-49503718 Msa0685390:intron 55.0%
CCGCGTGTTAGTCACTTGCA+AGG - chr4_4:49504293-49504312 Msa0685390:intron 55.0%
GTCAGGGTACGCGTTTCATC+TGG - chr4_4:49504448-49504467 Msa0685390:intron 55.0%
TACCGGTATCCGTGTGGCTT+TGG - chr4_4:49505432-49505451 Msa0685390:intron 55.0%
AGCCAAAGCCACACGGATAC+CGG + chr4_4:49505437-49505456 None:intergenic 55.0%
!! ACGGGAACTTGTTGCGTGTC+TGG + chr4_4:49505508-49505527 None:intergenic 55.0%
! GCGAAACTAGGCACTTGCTG+AGG + chr4_4:49505544-49505563 None:intergenic 55.0%
GCCCAAGAGGATGCGAAACT+AGG + chr4_4:49505556-49505575 None:intergenic 55.0%
! CTTGAGAGGAGCACACTCGA+AGG + chr4_4:49505842-49505861 None:intergenic 55.0%
CTTCGAGTGTGCTCCTCTCA+AGG - chr4_4:49505840-49505859 Msa0685390:intron 55.0%
!! TCCCCGGTACCCATTTTGGT+GGG - chr4_4:49505878-49505897 Msa0685390:intron 55.0%
! ACCCACCAAAATGGGTACCG+GGG + chr4_4:49505882-49505901 None:intergenic 55.0%
GCTGCAGCTAAACCTTCCTG+AGG + chr4_4:49506246-49506265 None:intergenic 55.0%
TGAAGCAGGCGCCAAGAGCA+TGG - chr4_4:49503781-49503800 Msa0685390:intron 60.0%
CACCAGCGCTTCCTTGCTAC+CGG - chr4_4:49505415-49505434 Msa0685390:intron 60.0%
! TACCGGTAGCAAGGAAGCGC+TGG + chr4_4:49505420-49505439 None:intergenic 60.0%
CCACACGGATACCGGTAGCA+AGG + chr4_4:49505429-49505448 None:intergenic 60.0%
CCTTGCTACCGGTATCCGTG+TGG - chr4_4:49505426-49505445 Msa0685390:intron 60.0%
! CTCCCCGGTACCCATTTTGG+TGG - chr4_4:49505877-49505896 Msa0685390:intron 60.0%
GGCTCCAACAACCGTGGCAG+AGG - chr4_4:49501614-49501633 Msa0685390:intron 65.0%
!! CGGTAGCAAGGAAGCGCTGG+TGG + chr4_4:49505417-49505436 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 49498950 49507067 49498950 ID=Msa0685390;Name=Msa0685390
chr4_4 mRNA 49498950 49507067 49498950 ID=Msa0685390-mRNA-1;Parent=Msa0685390;Name=Msa0685390-mRNA-1;_AED=0.19;_eAED=0.19;_QI=240|1|1|1|0.5|1|3|654|240
chr4_4 exon 49498950 49499840 49498950 ID=Msa0685390-mRNA-1:exon:12496;Parent=Msa0685390-mRNA-1
chr4_4 exon 49500396 49500698 49500396 ID=Msa0685390-mRNA-1:exon:12495;Parent=Msa0685390-mRNA-1
chr4_4 exon 49506645 49507067 49506645 ID=Msa0685390-mRNA-1:exon:12494;Parent=Msa0685390-mRNA-1
chr4_4 five_prime_UTR 49506828 49507067 49506828 ID=Msa0685390-mRNA-1:five_prime_utr;Parent=Msa0685390-mRNA-1
chr4_4 CDS 49506645 49506827 49506645 ID=Msa0685390-mRNA-1:cds;Parent=Msa0685390-mRNA-1
chr4_4 CDS 49500396 49500698 49500396 ID=Msa0685390-mRNA-1:cds;Parent=Msa0685390-mRNA-1
chr4_4 CDS 49499604 49499840 49499604 ID=Msa0685390-mRNA-1:cds;Parent=Msa0685390-mRNA-1
chr4_4 three_prime_UTR 49498950 49499603 49498950 ID=Msa0685390-mRNA-1:three_prime_utr;Parent=Msa0685390-mRNA-1
Gene Sequence

>Msa0685390

ATGAAAATACAGTGTGATGTGTGTGAGAAAGCTCCTGCTACGGTGATTTGTTGTGCTGATGAAGCTGCTTTGTGTGCTAAATGTGATGTTGAAGTTCATGCTGCTAATAAGCTTGCTAGCAAGCATCAAAGGCTTCTTCTTCAATGTCTTTCTAACAAGCTTCCTAAATGTGATATCTGCCAAGATAAGCCAGCTTTCATATTTTGTGTTGAAGACCGAGCACTGTTCTGTAAGGACTGTGATGAACCAATTCATGTAGCTGGTAGTCTTTCTGGAAACCACCAGCGCTTCCTTGCTACCGGTATCCGTGTGGCTTTGGCTTCTAGTTGCACCAAAGACAATGAGAAAAGCCAAGTTGAACCATCTAATCCAGACACGCAACAAGTTCCCGTCAAAGTTTCTCCTCCTCAGCAAGTGCCTAGTTTCGCATCCTCTTGGGCTGTTGATGATTTCTTGGAATTAACTGGCTTTGATTCACCAGACAAGAAGCAATCCATGGAGTTTGGAGAGCTTGAATGGCTATCGGATGCAGGTCTTTTCAATGACCAGTTTCCTCAGGAAGGTTTAGCTGCAGCTGAAGTTCCGCAACTTCCAGTAATGCATGCTGGCAGTGTTTATCCTTACAAAGCCTCTAAATCTTATATGTCTTACAAAAAGCCTAGGATTGAAGTCCGACATGAAGACGATGATGATGAGCACTTCATGGTGCCAGATCTCGGCTAA

Protein sequence

>Msa0685390

MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPKCDICQDKPAFIFCVEDRALFCKDCDEPIHVAGSLSGNHQRFLATGIRVALASSCTKDNEKSQVEPSNPDTQQVPVKVSPPQQVPSFASSWAVDDFLELTGFDSPDKKQSMEFGELEWLSDAGLFNDQFPQEGLAAAEVPQLPVMHAGSVYPYKASKSYMSYKKPRIEVRHEDDDDEHFMVPDLG*