AlfalfaGEDB | Msa1038520

M. sativa cultivar zhongmu-4 / Msa1038520

KEGG: K08867
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038520	XP_003626402.1	97.383	726	19	0	1	726	1	726	0.0	1476

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038520	sp\|Q9CAV6\|WNK1_ARATH	57.682	768	213	16	1	725	1	699	0.0	819

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038520	G7L0U9	97.383	726	19	0	1	726	1	726	0.0	1476

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0243810	Msa1038520	0.800134	1.661685e-48	-8.615850e-47
Msa0307470	Msa1038520	0.815208	1.039854e-51	-8.615850e-47
Msa0388840	Msa1038520	0.847132	1.402949e-59	-8.615850e-47
Msa0577120	Msa1038520	0.805116	1.558800e-49	-8.615850e-47
Msa0704730	Msa1038520	0.809866	1.531313e-50	-8.615850e-47
Msa0878880	Msa1038520	0.824889	6.321398e-54	-8.615850e-47
Msa0944550	Msa1038520	0.802925	4.450797e-49	-8.615850e-47
Msa1038520	Msa1070850	0.816507	5.335561e-52	-8.615850e-47
Msa1038520	Msa1129210	0.954696	1.651326e-112	-8.615850e-47
Msa1038520	Msa1172930	0.957515	2.254407e-115	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038520	MtrunA17_Chr7g0273851	97.383	726	19	0	1	726	1	726	0.0	1476
Msa1038520	MtrunA17_Chr1g0190951	72.922	746	178	13	1	726	1	742	0.0	1048
Msa1038520	MtrunA17_Chr1g0205471	56.042	753	260	17	1	726	1	709	0.0	784
Msa1038520	MtrunA17_Chr3g0116811	60.230	435	137	4	11	444	13	412	5.67e-173	508
Msa1038520	MtrunA17_Chr8g0346511	54.585	458	184	7	11	465	25	461	1.27e-159	477
Msa1038520	MtrunA17_Chr5g0432541	53.613	429	156	5	10	436	13	400	7.30e-157	466
Msa1038520	MtrunA17_Chr3g0129771	51.641	457	198	6	3	446	12	458	1.72e-154	463
Msa1038520	MtrunA17_Chr3g0119911	52.000	475	194	7	8	478	4	448	1.04e-153	459
Msa1038520	MtrunA17_Chr8g0384001	45.920	527	250	9	8	521	12	516	2.27e-152	456
Msa1038520	MtrunA17_Chr7g0244601	45.660	530	211	9	14	526	18	487	3.03e-148	445

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1038520	AT3G04910.1	57.682	768	213	16	1	725	1	699	819
Msa1038520	AT3G04910.2	56.617	733	206	16	36	725	13	676	761
Msa1038520	AT5G28080.2	64.844	512	136	7	1	499	2	482	640
Msa1038520	AT3G22420.1	61.122	517	164	8	1	505	1	492	608
Msa1038520	AT3G22420.4	61.122	517	164	8	1	505	72	563	607
Msa1038520	AT3G22420.3	58.088	544	164	9	1	505	72	590	593
Msa1038520	AT3G22420.5	58.088	544	164	9	1	505	1	519	592
Msa1038520	AT3G22420.6	57.559	549	164	9	1	505	1	524	590
Msa1038520	AT3G04910.3	51.558	642	199	16	127	725	1	573	579
Msa1038520	AT3G22420.2	54.861	576	164	10	1	505	1	551	576

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Find 169 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCCGAAGATCTCGAG+AGG	0.699008	7_1:+75421769	Msa1038520:CDS
AAAATATCAAATGGAGTTGT+GGG	0.411911	7_1:+75424221	Msa1038520:CDS
AAAGCCTCTCGAGATCTTCG+GGG	0.664970	7_1:-75421773	None:intergenic
AAAGGCAAGAGGAAAGACGA+CGG	0.757792	7_1:+75423362	Msa1038520:CDS
AAATGATTTGGTTTCCTTGC+AGG	0.314652	7_1:-75424759	None:intergenic
AACAGTTTCGCACCCAACGC+AGG	0.598195	7_1:+75424081	Msa1038520:CDS
AACATATCACACCGCAATTT+TGG	0.128748	7_1:-75424428	None:intergenic
AACTCCTTGAAAGATTTATC+AGG	0.369664	7_1:+75424105	Msa1038520:CDS
AAGAATGACTGACTAACGAG+AGG	0.669172	7_1:-75423182	None:intergenic
AAGATAAAAGAGAGGGTATT+CGG	0.308116	7_1:+75424055	Msa1038520:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTACAGTACCATGAAATTCT+TGG	+	chr7_1:75421460-75421479	Msa1038520:intron	30.0%
TAGAGAGCTTATGGAAAATA+AGG	-	chr7_1:75422430-75422449	None:intergenic	30.0%
CAATTAGTCCACTTAGTTAA+TGG	+	chr7_1:75422599-75422618	Msa1038520:intron	30.0%
TATTCCTCTTCATATACTTC+TGG	-	chr7_1:75422777-75422796	None:intergenic	30.0%
TGATGCTTTGTATAAAGTGA+AGG	+	chr7_1:75423007-75423026	Msa1038520:CDS	30.0%
TACTTATGTTACTATAGCTG+CGG	-	chr7_1:75423217-75423236	None:intergenic	30.0%
TTCAATTCCATGTTCAATCT+CGG	-	chr7_1:75423291-75423310	None:intergenic	30.0%
ATTAAGTGTAGCAACTGAAA+TGG	+	chr7_1:75423573-75423592	Msa1038520:CDS	30.0%
AATTTCTCCATCTATCATAC+GGG	-	chr7_1:75423641-75423660	None:intergenic	30.0%
CAATTTCTCCATCTATCATA+CGG	-	chr7_1:75423642-75423661	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	75421228	75424789	75421228	ID=Msa1038520;Name=Msa1038520
chr7_1	mRNA	75421228	75424789	75421228	ID=Msa1038520-mRNA-1;Parent=Msa1038520;Name=Msa1038520-mRNA-1;_AED=0.03;_eAED=0.03;_QI=83\|1\|1\|1\|0.85\|0.75\|8\|198\|726
chr7_1	exon	75421228	75421385	75421228	ID=Msa1038520-mRNA-1:exon:19243;Parent=Msa1038520-mRNA-1
chr7_1	exon	75421466	75421503	75421466	ID=Msa1038520-mRNA-1:exon:19244;Parent=Msa1038520-mRNA-1
chr7_1	exon	75421698	75421925	75421698	ID=Msa1038520-mRNA-1:exon:19245;Parent=Msa1038520-mRNA-1
chr7_1	exon	75422059	75422279	75422059	ID=Msa1038520-mRNA-1:exon:19246;Parent=Msa1038520-mRNA-1
chr7_1	exon	75422754	75422911	75422754	ID=Msa1038520-mRNA-1:exon:19247;Parent=Msa1038520-mRNA-1
chr7_1	exon	75422996	75423422	75422996	ID=Msa1038520-mRNA-1:exon:19248;Parent=Msa1038520-mRNA-1
chr7_1	exon	75423524	75424572	75423524	ID=Msa1038520-mRNA-1:exon:19249;Parent=Msa1038520-mRNA-1
chr7_1	exon	75424607	75424789	75424607	ID=Msa1038520-mRNA-1:exon:19250;Parent=Msa1038520-mRNA-1
chr7_1	five_prime_UTR	75421228	75421310	75421228	ID=Msa1038520-mRNA-1:five_prime_utr;Parent=Msa1038520-mRNA-1
chr7_1	CDS	75421311	75421385	75421311	ID=Msa1038520-mRNA-1:cds;Parent=Msa1038520-mRNA-1
chr7_1	CDS	75421466	75421503	75421466	ID=Msa1038520-mRNA-1:cds;Parent=Msa1038520-mRNA-1
chr7_1	CDS	75421698	75421925	75421698	ID=Msa1038520-mRNA-1:cds;Parent=Msa1038520-mRNA-1
chr7_1	CDS	75422059	75422279	75422059	ID=Msa1038520-mRNA-1:cds;Parent=Msa1038520-mRNA-1
chr7_1	CDS	75422754	75422911	75422754	ID=Msa1038520-mRNA-1:cds;Parent=Msa1038520-mRNA-1
chr7_1	CDS	75422996	75423422	75422996	ID=Msa1038520-mRNA-1:cds;Parent=Msa1038520-mRNA-1
chr7_1	CDS	75423524	75424557	75423524	ID=Msa1038520-mRNA-1:cds;Parent=Msa1038520-mRNA-1
chr7_1	three_prime_UTR	75424558	75424572	75424558	ID=Msa1038520-mRNA-1:three_prime_utr;Parent=Msa1038520-mRNA-1
chr7_1	three_prime_UTR	75424607	75424789	75424607	ID=Msa1038520-mRNA-1:three_prime_utr;Parent=Msa1038520-mRNA-1

Gene Sequence

>Msa1038520

ATGAATGGTGTGACACAGCTTGAAACAGATGACTCTGATTTTGTTGAAGTTGATCCAACCGGTAGATATGGCAGATACCATGAAATTCTTGGCAAAGGAGCTTCCAAAACAGTATATAGAGCATTTGATGAGTATCAAGGGATTGAAGTTGCTTGGAATCAAATCAAACTATATGATTTCCTACAAAACCCCGAAGATCTCGAGAGGCTTTACTGCGAAATTCATCTCCTCAAGACGTTGAAGCACAAAAACATTATGAAATTTTATACTTCTTGGGTTGATACTGCAAATAGGAATATCAACTTTGTCACTGAATTGTTTACTTCTGGTACTCTTAGACAGTATAGGCTAAAGCACAAGAGGGTTAATATTAGAGCAGTGAAGCATTGGTGTAGACAGATCCTGCAAGGACTTCTATATCTTCATAGCCACGACCCACCTGTGATCCATAGAGATCTTAAATGTGATAATATTTTCATTAATGGAAATCAAGGGGAGGTGAAGATTGGGGATCTTGGTTTGGCAGCGATTCTCCGGAAATCACATGCTGCTCATTGTGTAGGAACGCCTGAATTCATGGCACCAGAAGTATATGAAGAGGAATATAATGAATTAGTTGACATTTATTCCTTTGGTATGTGCGTATTAGAAATGGTCACATTTGAGTATCCTTATAGTGAATGCAGCCATCCAGCACAGATCTACAAGAAAGTTTCTTCTGGGAAAAAACCTGATGCTTTGTATAAAGTGAAGGATCCAGAAGTGCGAGAGTTCGTTGAGAAATGCCTTGCAACCGCGTCTCTAAGGCTGTCTGCAAGGGAGCTTCTAGATGATCCTTTTCTTCAAATTGATGATGACGAATATGATTTGGGGTCGGTAGATGTTGGAGAGTTTGGTGACTTGGGTCCTCTCGTTAGTCAGTCATTCTTTTCAATTGACCGCAGCTATAGTAACATAAGTACTGAATACTCCAATGGTTTTGGGTACGAAGTAGATTGGTATTCTCAGCCAACCGAGATTGAACATGGAATTGAACTTTTTGAGTGCCATGACGATGAACCCTCCAAAGATGTTGACATAAGCATCAAAGGCAAGAGGAAAGACGACGGTAGTATCTTTTTGAGACTAAGAATTGCGGACAAAGAAGATCGTATCCGAAACATTTATTTCCCATTTGACATAGACTTGGACACGGCATTAAGTGTAGCAACTGAAATGGTTGCGGAACTCGACATTACAGATCAGGATGTTACCAGTATAGCCCGTATGATAGATGGAGAAATTGCTTCTTTGGTACCTGAATGGAGGCCAGGACCAGGAATTGATGAAACCATCAACTATTCAAATCAAAGTTTGTGTGACAATTGTGTGTCTAATCATACTACAAATACAGATTCTCTTTTACGTAATCAAAGTGCAAAAAACTTGCACCTTCTTCAATGCTGCACACACGGATGTGCTTCAATGCACGGCCGGTTTGAGGAGATTACATTCCAATCTGAGGACTATGACGACATCCACGTTAGCGAGGATGCACCTAACATATCAAGCAAATCAGATTTCTTGCAGTATCAGGAATCATGGAATCAGCACGAAAGCCGTGAACTGAGTCCTGTAGAGTCTACTCGAAGCCATTCTGATGAACGATATGAACTATTAGATAAATCATTGCTGATTGAAGATAAAAGAGAGGGTATTCGGGAAAACAGTTTCGCACCCAACGCAGGAAACTCCTTGAAAGATTTATCAGGAAACCATTTTTTATCTACTATTGGTTCTCTATATTGTGGAGTTGAGAATGATTATGAGAAAGAGATCCAACATGAGTTGAGATGGCTGAAAGCAAAATATCAAATGGAGTTGTGGGAACTTAAGGATAAACAGTTGGGTGTAGAAGCTAAATCTCCACATATTGAGCACAAAACACCACCAGAAACCGAAACAGTGAACAGTTTCGATAATGGGATTCATTTCCATAATTACAAGGATTGTGATTCCAGTTATAGTTCTCGAGAACAGAAGAGCCATCCCAATCTTGACACCCGAAGGGCCCAAAATTGCGGTGTGATATGTTCTAATGAAGAAGATATGGCTACTGCAAAGAATTTTTACACAAGGTTGTTTCTTCCGGACACTCTACACAGGACTGTTTCCCTCCCTGTTGATGCTGTGGATGTATAA

Protein sequence

>Msa1038520

MNGVTQLETDDSDFVEVDPTGRYGRYHEILGKGASKTVYRAFDEYQGIEVAWNQIKLYDFLQNPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRNINFVTELFTSGTLRQYRLKHKRVNIRAVKHWCRQILQGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEEYNELVDIYSFGMCVLEMVTFEYPYSECSHPAQIYKKVSSGKKPDALYKVKDPEVREFVEKCLATASLRLSARELLDDPFLQIDDDEYDLGSVDVGEFGDLGPLVSQSFFSIDRSYSNISTEYSNGFGYEVDWYSQPTEIEHGIELFECHDDEPSKDVDISIKGKRKDDGSIFLRLRIADKEDRIRNIYFPFDIDLDTALSVATEMVAELDITDQDVTSIARMIDGEIASLVPEWRPGPGIDETINYSNQSLCDNCVSNHTTNTDSLLRNQSAKNLHLLQCCTHGCASMHGRFEEITFQSEDYDDIHVSEDAPNISSKSDFLQYQESWNQHESRELSPVESTRSHSDERYELLDKSLLIEDKREGIRENSFAPNAGNSLKDLSGNHFLSTIGSLYCGVENDYEKEIQHELRWLKAKYQMELWELKDKQLGVEAKSPHIEHKTPPETETVNSFDNGIHFHNYKDCDSSYSSREQKSHPNLDTRRAQNCGVICSNEEDMATAKNFYTRLFLPDTLHRTVSLPVDAVDV*