AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0878880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0878880 MtrunA17_Chr6g0461331 93.644 236 7 1 1 236 1 228 3.21e-163 450
Msa0878880 MtrunA17_Chr7g0253401 44.800 250 82 10 1 233 1 211 5.72e-55 175
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0878880 AT3G03870.2 37.545 277 116 15 1 233 1 264 2.58e-31 116
Msa0878880 AT5G18130.1 42.857 175 58 8 91 233 114 278 7.72e-31 115
Msa0878880 AT3G03870.1 33.058 242 106 14 1 199 1 229 1.66e-14 70.9
Msa0878880 AT5G18130.2 36.364 143 50 7 91 202 114 246 3.83e-14 70.1

Find 54 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCTCCAAGAGGGTGATTT+TGG 0.133156 6_1:-20341773 None:intergenic
AGAAATTGCTTCATTCAATT+TGG 0.207751 6_1:-20343202 None:intergenic
GTTATGTGAGCTCTTGTTAT+AGG 0.220981 6_1:-20343240 None:intergenic
GTTCCCTTAATGCTCATATT+TGG 0.221682 6_1:+20343413 Msa0878880:three_prime_UTR
TCTTTCTCAATAATCATTCT+TGG 0.230298 6_1:-20342150 None:intergenic
AAGATTAAGGAAAATGAAAT+TGG 0.238321 6_1:+20342072 Msa0878880:CDS
CAGTCCAAATATGAGCATTA+AGG 0.264166 6_1:-20343417 None:intergenic
AGTTGGAGTTTCAAAATATT+AGG 0.269399 6_1:-20341690 None:intergenic
GTTGGTGCTATTTGTACTTT+TGG 0.274032 6_1:+20342258 Msa0878880:CDS
ATTATTGAGAAAGATGATTT+TGG 0.285258 6_1:+20342159 Msa0878880:CDS
AAACATTTGGAGTATATAAT+AGG 0.334822 6_1:+20343317 Msa0878880:three_prime_UTR
CCTTGTCATCAGCATAGATT+TGG 0.343870 6_1:-20342362 None:intergenic
GAGGTCCTTCATGAAACATT+TGG 0.364439 6_1:+20343304 Msa0878880:three_prime_UTR
TTACCAAGTTTGAGGTCTAA+TGG 0.382258 6_1:-20341961 None:intergenic
TAACACCTCAAATGATGTTA+TGG 0.383015 6_1:+20341981 Msa0878880:CDS
TTTATTGAATTAATTAAAGA+TGG 0.385433 6_1:-20341661 None:intergenic
GAAGCAATTTCTGTTGTAAG+AGG 0.417052 6_1:+20343213 Msa0878880:CDS
AAGACCATAGAGATTATATA+TGG 0.417053 6_1:-20343448 None:intergenic
AGTCCAAATATGAGCATTAA+GGG 0.419091 6_1:-20343416 None:intergenic
GGTCTAATGGAATTTGTAAA+GGG 0.426783 6_1:-20341948 None:intergenic
TATACCATATATAATCTCTA+TGG 0.432904 6_1:+20343444 Msa0878880:three_prime_UTR
TTATGGAAGTGGAGTCTTAG+TGG 0.435150 6_1:+20342234 Msa0878880:CDS
ATAAGTAAATAAATAAAAGT+TGG 0.444781 6_1:-20341707 None:intergenic
TGGGAAGAAGAGAATAATAG+TGG 0.445840 6_1:+20342204 Msa0878880:CDS
AAAATCCAAAATCACCCTCT+TGG 0.447623 6_1:+20341768 Msa0878880:five_prime_UTR
TTGAGGTGTTACCAAGTTTG+AGG 0.452496 6_1:-20341969 None:intergenic
AGGTCTAATGGAATTTGTAA+AGG 0.463571 6_1:-20341949 None:intergenic
TTGAACCATAACATCATTTG+AGG 0.471724 6_1:-20341986 None:intergenic
TCTTTGCTACTACTTGACTT+TGG 0.472978 6_1:-20342114 None:intergenic
CAAAATCACCCTCTTGGAGA+TGG 0.481333 6_1:+20341774 Msa0878880:exon
TGGAGATGGATCTTGATGAA+TGG 0.483700 6_1:+20341788 Msa0878880:exon
GAATTTGTAAAGGGACAAGT+TGG 0.486114 6_1:-20341939 None:intergenic
TTTGATTGAAGTATCAATTG+AGG 0.486123 6_1:+20343285 Msa0878880:exon
GGAGATGGATCTTGATGAAT+GGG 0.498676 6_1:+20341789 Msa0878880:exon
TTCAGAAGGATCAGAAGAAT+AGG 0.499980 6_1:+20342337 Msa0878880:CDS
ATTCCATTAGACCTCAAACT+TGG 0.502699 6_1:+20341958 Msa0878880:CDS
CAAAGAAGAGGATTCAAGTT+GGG 0.511674 6_1:+20342185 Msa0878880:CDS
TATATTGATTTCAATGAAGA+TGG 0.511704 6_1:+20341832 Msa0878880:CDS
TGTTCTTTGGAAGCCAACAT+AGG 0.514724 6_1:+20342307 Msa0878880:CDS
GAATTAATTAAAGATGGAGA+TGG 0.545724 6_1:-20341655 None:intergenic
ATACTCCAAATGTTTCATGA+AGG 0.562097 6_1:-20343309 None:intergenic
AAGTGGAGTCTTAGTGGTGT+TGG 0.575334 6_1:+20342240 Msa0878880:CDS
ATTTCAGAGGATTAAGCAAG+TGG 0.577509 6_1:+20343167 Msa0878880:intron
ACAAAGAAGAGGATTCAAGT+TGG 0.588072 6_1:+20342184 Msa0878880:CDS
CCAAATCTATGCTGATGACA+AGG 0.589218 6_1:+20342362 Msa0878880:CDS
AGAGCTCACATAACAGTTGG+TGG 0.589518 6_1:+20343249 Msa0878880:CDS
TGGGAATCAATCTCTAGTGA+TGG 0.593054 6_1:+20341808 Msa0878880:CDS
ACAAGAGCTCACATAACAGT+TGG 0.595311 6_1:+20343246 Msa0878880:CDS
GAGTTTCAAAATATTAGGTG+AGG 0.595658 6_1:-20341685 None:intergenic
ATCAGAAAGTGCTTTAGACA+TGG 0.600275 6_1:+20341882 Msa0878880:CDS
ATCAAGATCCATCTCCAAGA+GGG 0.609806 6_1:-20341782 None:intergenic
GAGTATATAATAGGAACAAG+TGG 0.632133 6_1:+20343326 Msa0878880:three_prime_UTR
AGTTAATTCACAAACTATAG+CGG 0.632666 6_1:+20343474 Msa0878880:three_prime_UTR
CATCAAGATCCATCTCCAAG+AGG 0.699790 6_1:-20341783 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTGAATTAATTAAAGA+TGG - chr6_1:20341664-20341683 None:intergenic 10.0%
!! ATAAGTAAATAAATAAAAGT+TGG - chr6_1:20341710-20341729 None:intergenic 10.0%
!! TTTATTGAATTAATTAAAGA+TGG - chr6_1:20341664-20341683 None:intergenic 10.0%
!! ATAAGTAAATAAATAAAAGT+TGG - chr6_1:20341710-20341729 None:intergenic 10.0%
!!! TTTTTGATTAGTATAGTAAA+TGG - chr6_1:20341745-20341764 None:intergenic 15.0%
!!! ATAATAGTGGTTTTAATTTA+TGG + chr6_1:20342217-20342236 Msa0878880:CDS 15.0%
!! ATTGATTAGTAGAAAAAATA+TGG - chr6_1:20342962-20342981 None:intergenic 15.0%
!!! AAAAAAAAGTATTAACTTTG+TGG + chr6_1:20343088-20343107 Msa0878880:intron 15.0%
!!! TTTTTGATTAGTATAGTAAA+TGG - chr6_1:20341745-20341764 None:intergenic 15.0%
!!! ATAATAGTGGTTTTAATTTA+TGG + chr6_1:20342217-20342236 Msa0878880:CDS 15.0%
!! ATTGATTAGTAGAAAAAATA+TGG - chr6_1:20342962-20342981 None:intergenic 15.0%
!!! AAAAAAAAGTATTAACTTTG+TGG + chr6_1:20343088-20343107 Msa0878880:intron 15.0%
!!! TATATTGATTTCAATGAAGA+TGG + chr6_1:20341832-20341851 Msa0878880:CDS 20.0%
!!! ACAAGTTTTCTTTAAGATTA+AGG + chr6_1:20342059-20342078 Msa0878880:CDS 20.0%
!! AAGATTAAGGAAAATGAAAT+TGG + chr6_1:20342072-20342091 Msa0878880:CDS 20.0%
!!! ATTATTGAGAAAGATGATTT+TGG + chr6_1:20342159-20342178 Msa0878880:CDS 20.0%
!! TAAACCATTTATACTAAATC+AGG - chr6_1:20342517-20342536 None:intergenic 20.0%
!!! TAGCAATACTTTTTTTTTGA+GGG + chr6_1:20342653-20342672 Msa0878880:intron 20.0%
!!! TTTTAGTCATTATGTTGTTA+AGG + chr6_1:20342688-20342707 Msa0878880:intron 20.0%
!! CATAATCAATAAGTCAAAAA+CGG - chr6_1:20342887-20342906 None:intergenic 20.0%
!!! AAACATTTGGAGTATATAAT+AGG + chr6_1:20343317-20343336 Msa0878880:three_prime_UTR 20.0%
!! TATACCATATATAATCTCTA+TGG + chr6_1:20343444-20343463 Msa0878880:three_prime_UTR 20.0%
!!! TATATTGATTTCAATGAAGA+TGG + chr6_1:20341832-20341851 Msa0878880:CDS 20.0%
!!! ACAAGTTTTCTTTAAGATTA+AGG + chr6_1:20342059-20342078 Msa0878880:CDS 20.0%
!! AAGATTAAGGAAAATGAAAT+TGG + chr6_1:20342072-20342091 Msa0878880:CDS 20.0%
!!! ATTATTGAGAAAGATGATTT+TGG + chr6_1:20342159-20342178 Msa0878880:CDS 20.0%
!! TAAACCATTTATACTAAATC+AGG - chr6_1:20342517-20342536 None:intergenic 20.0%
!!! TAGCAATACTTTTTTTTTGA+GGG + chr6_1:20342653-20342672 Msa0878880:intron 20.0%
!!! TTTTAGTCATTATGTTGTTA+AGG + chr6_1:20342688-20342707 Msa0878880:intron 20.0%
!! CATAATCAATAAGTCAAAAA+CGG - chr6_1:20342887-20342906 None:intergenic 20.0%
!!! AAACATTTGGAGTATATAAT+AGG + chr6_1:20343317-20343336 Msa0878880:three_prime_UTR 20.0%
!! TATACCATATATAATCTCTA+TGG + chr6_1:20343444-20343463 Msa0878880:three_prime_UTR 20.0%
! GAATTAATTAAAGATGGAGA+TGG - chr6_1:20341658-20341677 None:intergenic 25.0%
! AGTTGGAGTTTCAAAATATT+AGG - chr6_1:20341693-20341712 None:intergenic 25.0%
! AAAAAAAGTTTCCTAGGAAA+AGG + chr6_1:20341859-20341878 Msa0878880:CDS 25.0%
! TCTTTCTCAATAATCATTCT+TGG - chr6_1:20342153-20342172 None:intergenic 25.0%
!!! TCTATTTGTGTTTTGTTCTT+TGG + chr6_1:20342294-20342313 Msa0878880:CDS 25.0%
! TGTTAATGACTAATGTTTGT+CGG + chr6_1:20342487-20342506 Msa0878880:intron 25.0%
! AGAACCTGATTTAGTATAAA+TGG + chr6_1:20342510-20342529 Msa0878880:intron 25.0%
!!! GTAGCAATACTTTTTTTTTG+AGG + chr6_1:20342652-20342671 Msa0878880:intron 25.0%
! TTCATATCAATCAACTAACA+AGG - chr6_1:20342749-20342768 None:intergenic 25.0%
! TGATATGAACTCTTTATAGT+TGG + chr6_1:20342760-20342779 Msa0878880:intron 25.0%
! AGAAATTGCTTCATTCAATT+TGG - chr6_1:20343205-20343224 None:intergenic 25.0%
!! TTTGATTGAAGTATCAATTG+AGG + chr6_1:20343285-20343304 Msa0878880:exon 25.0%
! AAGACCATAGAGATTATATA+TGG - chr6_1:20343451-20343470 None:intergenic 25.0%
! AGTTAATTCACAAACTATAG+CGG + chr6_1:20343474-20343493 Msa0878880:three_prime_UTR 25.0%
!! GCGGATTTTACATTATTATT+TGG + chr6_1:20343493-20343512 Msa0878880:three_prime_UTR 25.0%
! GAATTAATTAAAGATGGAGA+TGG - chr6_1:20341658-20341677 None:intergenic 25.0%
! AGTTGGAGTTTCAAAATATT+AGG - chr6_1:20341693-20341712 None:intergenic 25.0%
! AAAAAAAGTTTCCTAGGAAA+AGG + chr6_1:20341859-20341878 Msa0878880:CDS 25.0%
! TCTTTCTCAATAATCATTCT+TGG - chr6_1:20342153-20342172 None:intergenic 25.0%
!!! TCTATTTGTGTTTTGTTCTT+TGG + chr6_1:20342294-20342313 Msa0878880:CDS 25.0%
! TGTTAATGACTAATGTTTGT+CGG + chr6_1:20342487-20342506 Msa0878880:intron 25.0%
! AGAACCTGATTTAGTATAAA+TGG + chr6_1:20342510-20342529 Msa0878880:intron 25.0%
!!! GTAGCAATACTTTTTTTTTG+AGG + chr6_1:20342652-20342671 Msa0878880:intron 25.0%
! TTCATATCAATCAACTAACA+AGG - chr6_1:20342749-20342768 None:intergenic 25.0%
! TGATATGAACTCTTTATAGT+TGG + chr6_1:20342760-20342779 Msa0878880:intron 25.0%
! AGAAATTGCTTCATTCAATT+TGG - chr6_1:20343205-20343224 None:intergenic 25.0%
!! TTTGATTGAAGTATCAATTG+AGG + chr6_1:20343285-20343304 Msa0878880:exon 25.0%
! AAGACCATAGAGATTATATA+TGG - chr6_1:20343451-20343470 None:intergenic 25.0%
! AGTTAATTCACAAACTATAG+CGG + chr6_1:20343474-20343493 Msa0878880:three_prime_UTR 25.0%
!! GCGGATTTTACATTATTATT+TGG + chr6_1:20343493-20343512 Msa0878880:three_prime_UTR 25.0%
GAGTTTCAAAATATTAGGTG+AGG - chr6_1:20341688-20341707 None:intergenic 30.0%
!!! ACAAGTTGGTTTTGTTTTCT+TGG - chr6_1:20341928-20341947 None:intergenic 30.0%
GGTCTAATGGAATTTGTAAA+GGG - chr6_1:20341951-20341970 None:intergenic 30.0%
AGGTCTAATGGAATTTGTAA+AGG - chr6_1:20341952-20341971 None:intergenic 30.0%
TAACACCTCAAATGATGTTA+TGG + chr6_1:20341981-20342000 Msa0878880:CDS 30.0%
TTGAACCATAACATCATTTG+AGG - chr6_1:20341989-20342008 None:intergenic 30.0%
!!! GTGGTTTTAATTTATGGAAG+TGG + chr6_1:20342223-20342242 Msa0878880:CDS 30.0%
!!! TCTGAAGTTTTTTCCTATGT+TGG - chr6_1:20342323-20342342 None:intergenic 30.0%
ACATAGGAAAAAACTTCAGA+AGG + chr6_1:20342323-20342342 Msa0878880:CDS 30.0%
GACAAGGTTAGTAAATTTCT+TGG + chr6_1:20342378-20342397 Msa0878880:intron 30.0%
TTTATAACAACTCTAACCCT+TGG + chr6_1:20343139-20343158 Msa0878880:intron 30.0%
!! TCCTCTGAAATTAAAACCAA+GGG - chr6_1:20343158-20343177 None:intergenic 30.0%
!! ATCCTCTGAAATTAAAACCA+AGG - chr6_1:20343159-20343178 None:intergenic 30.0%
ATACTCCAAATGTTTCATGA+AGG - chr6_1:20343312-20343331 None:intergenic 30.0%
GAGTATATAATAGGAACAAG+TGG + chr6_1:20343326-20343345 Msa0878880:three_prime_UTR 30.0%
AGTCCAAATATGAGCATTAA+GGG - chr6_1:20343419-20343438 None:intergenic 30.0%
GAGTTTCAAAATATTAGGTG+AGG - chr6_1:20341688-20341707 None:intergenic 30.0%
!!! ACAAGTTGGTTTTGTTTTCT+TGG - chr6_1:20341928-20341947 None:intergenic 30.0%
GGTCTAATGGAATTTGTAAA+GGG - chr6_1:20341951-20341970 None:intergenic 30.0%
AGGTCTAATGGAATTTGTAA+AGG - chr6_1:20341952-20341971 None:intergenic 30.0%
TAACACCTCAAATGATGTTA+TGG + chr6_1:20341981-20342000 Msa0878880:CDS 30.0%
TTGAACCATAACATCATTTG+AGG - chr6_1:20341989-20342008 None:intergenic 30.0%
!!! GTGGTTTTAATTTATGGAAG+TGG + chr6_1:20342223-20342242 Msa0878880:CDS 30.0%
!!! TCTGAAGTTTTTTCCTATGT+TGG - chr6_1:20342323-20342342 None:intergenic 30.0%
ACATAGGAAAAAACTTCAGA+AGG + chr6_1:20342323-20342342 Msa0878880:CDS 30.0%
GACAAGGTTAGTAAATTTCT+TGG + chr6_1:20342378-20342397 Msa0878880:intron 30.0%
TTTATAACAACTCTAACCCT+TGG + chr6_1:20343139-20343158 Msa0878880:intron 30.0%
!! TCCTCTGAAATTAAAACCAA+GGG - chr6_1:20343158-20343177 None:intergenic 30.0%
!! ATCCTCTGAAATTAAAACCA+AGG - chr6_1:20343159-20343178 None:intergenic 30.0%
ATACTCCAAATGTTTCATGA+AGG - chr6_1:20343312-20343331 None:intergenic 30.0%
GAGTATATAATAGGAACAAG+TGG + chr6_1:20343326-20343345 Msa0878880:three_prime_UTR 30.0%
AGTCCAAATATGAGCATTAA+GGG - chr6_1:20343419-20343438 None:intergenic 30.0%
AAAATCCAAAATCACCCTCT+TGG + chr6_1:20341768-20341787 Msa0878880:five_prime_UTR 35.0%
GGTGAGAAAAAAAGTTTCCT+AGG + chr6_1:20341853-20341872 Msa0878880:CDS 35.0%
!! ATCAGAAAGTGCTTTAGACA+TGG + chr6_1:20341882-20341901 Msa0878880:CDS 35.0%
!!! TTTTGTTTTCTTGGTGGTGA+AGG - chr6_1:20341919-20341938 None:intergenic 35.0%
!!! AGTTGGTTTTGTTTTCTTGG+TGG - chr6_1:20341925-20341944 None:intergenic 35.0%
GAATTTGTAAAGGGACAAGT+TGG - chr6_1:20341942-20341961 None:intergenic 35.0%
ATTCCATTAGACCTCAAACT+TGG + chr6_1:20341958-20341977 Msa0878880:CDS 35.0%
! TTACCAAGTTTGAGGTCTAA+TGG - chr6_1:20341964-20341983 None:intergenic 35.0%
! CTTGTGACACATTTTCTTCT+TGG - chr6_1:20342044-20342063 None:intergenic 35.0%
TCTTTGCTACTACTTGACTT+TGG - chr6_1:20342117-20342136 None:intergenic 35.0%
!! TGATTTTGGTGACAAAGAAG+AGG + chr6_1:20342173-20342192 Msa0878880:CDS 35.0%
ACAAAGAAGAGGATTCAAGT+TGG + chr6_1:20342184-20342203 Msa0878880:CDS 35.0%
! CAAAGAAGAGGATTCAAGTT+GGG + chr6_1:20342185-20342204 Msa0878880:CDS 35.0%
TGGGAAGAAGAGAATAATAG+TGG + chr6_1:20342204-20342223 Msa0878880:CDS 35.0%
!!! GTTGGTGCTATTTGTACTTT+TGG + chr6_1:20342258-20342277 Msa0878880:CDS 35.0%
TTCAGAAGGATCAGAAGAAT+AGG + chr6_1:20342337-20342356 Msa0878880:CDS 35.0%
TTGTTAAGGCTGCAATTACA+TGG + chr6_1:20342702-20342721 Msa0878880:intron 35.0%
! CTGCAATTACATGGTAGTTT+TGG + chr6_1:20342711-20342730 Msa0878880:intron 35.0%
CTTTATAGTTGGAGAAACTG+TGG + chr6_1:20342771-20342790 Msa0878880:intron 35.0%
GATAAGAGACTGAATCTAAG+TGG + chr6_1:20342984-20343003 Msa0878880:intron 35.0%
!!! ACCCTTGGTTTTAATTTCAG+AGG + chr6_1:20343154-20343173 Msa0878880:intron 35.0%
ATTTCAGAGGATTAAGCAAG+TGG + chr6_1:20343167-20343186 Msa0878880:intron 35.0%
GAAGCAATTTCTGTTGTAAG+AGG + chr6_1:20343213-20343232 Msa0878880:CDS 35.0%
! GTTATGTGAGCTCTTGTTAT+AGG - chr6_1:20343243-20343262 None:intergenic 35.0%
GTTCCCTTAATGCTCATATT+TGG + chr6_1:20343413-20343432 Msa0878880:three_prime_UTR 35.0%
CAGTCCAAATATGAGCATTA+AGG - chr6_1:20343420-20343439 None:intergenic 35.0%
AAAATCCAAAATCACCCTCT+TGG + chr6_1:20341768-20341787 Msa0878880:five_prime_UTR 35.0%
GGTGAGAAAAAAAGTTTCCT+AGG + chr6_1:20341853-20341872 Msa0878880:CDS 35.0%
!! ATCAGAAAGTGCTTTAGACA+TGG + chr6_1:20341882-20341901 Msa0878880:CDS 35.0%
!!! TTTTGTTTTCTTGGTGGTGA+AGG - chr6_1:20341919-20341938 None:intergenic 35.0%
!!! AGTTGGTTTTGTTTTCTTGG+TGG - chr6_1:20341925-20341944 None:intergenic 35.0%
GAATTTGTAAAGGGACAAGT+TGG - chr6_1:20341942-20341961 None:intergenic 35.0%
ATTCCATTAGACCTCAAACT+TGG + chr6_1:20341958-20341977 Msa0878880:CDS 35.0%
! TTACCAAGTTTGAGGTCTAA+TGG - chr6_1:20341964-20341983 None:intergenic 35.0%
! CTTGTGACACATTTTCTTCT+TGG - chr6_1:20342044-20342063 None:intergenic 35.0%
TCTTTGCTACTACTTGACTT+TGG - chr6_1:20342117-20342136 None:intergenic 35.0%
!! TGATTTTGGTGACAAAGAAG+AGG + chr6_1:20342173-20342192 Msa0878880:CDS 35.0%
ACAAAGAAGAGGATTCAAGT+TGG + chr6_1:20342184-20342203 Msa0878880:CDS 35.0%
! CAAAGAAGAGGATTCAAGTT+GGG + chr6_1:20342185-20342204 Msa0878880:CDS 35.0%
TGGGAAGAAGAGAATAATAG+TGG + chr6_1:20342204-20342223 Msa0878880:CDS 35.0%
!!! GTTGGTGCTATTTGTACTTT+TGG + chr6_1:20342258-20342277 Msa0878880:CDS 35.0%
TTCAGAAGGATCAGAAGAAT+AGG + chr6_1:20342337-20342356 Msa0878880:CDS 35.0%
TTGTTAAGGCTGCAATTACA+TGG + chr6_1:20342702-20342721 Msa0878880:intron 35.0%
! CTGCAATTACATGGTAGTTT+TGG + chr6_1:20342711-20342730 Msa0878880:intron 35.0%
CTTTATAGTTGGAGAAACTG+TGG + chr6_1:20342771-20342790 Msa0878880:intron 35.0%
GATAAGAGACTGAATCTAAG+TGG + chr6_1:20342984-20343003 Msa0878880:intron 35.0%
!!! ACCCTTGGTTTTAATTTCAG+AGG + chr6_1:20343154-20343173 Msa0878880:intron 35.0%
ATTTCAGAGGATTAAGCAAG+TGG + chr6_1:20343167-20343186 Msa0878880:intron 35.0%
GAAGCAATTTCTGTTGTAAG+AGG + chr6_1:20343213-20343232 Msa0878880:CDS 35.0%
! GTTATGTGAGCTCTTGTTAT+AGG - chr6_1:20343243-20343262 None:intergenic 35.0%
GTTCCCTTAATGCTCATATT+TGG + chr6_1:20343413-20343432 Msa0878880:three_prime_UTR 35.0%
CAGTCCAAATATGAGCATTA+AGG - chr6_1:20343420-20343439 None:intergenic 35.0%
ATCAAGATCCATCTCCAAGA+GGG - chr6_1:20341785-20341804 None:intergenic 40.0%
TGGAGATGGATCTTGATGAA+TGG + chr6_1:20341788-20341807 Msa0878880:exon 40.0%
GGAGATGGATCTTGATGAAT+GGG + chr6_1:20341789-20341808 Msa0878880:exon 40.0%
TGGGAATCAATCTCTAGTGA+TGG + chr6_1:20341808-20341827 Msa0878880:CDS 40.0%
! CACTTTCTGATCCTTTTCCT+AGG - chr6_1:20341873-20341892 None:intergenic 40.0%
! TTGAGGTGTTACCAAGTTTG+AGG - chr6_1:20341972-20341991 None:intergenic 40.0%
TTATGGAAGTGGAGTCTTAG+TGG + chr6_1:20342234-20342253 Msa0878880:CDS 40.0%
! TGTTCTTTGGAAGCCAACAT+AGG + chr6_1:20342307-20342326 Msa0878880:CDS 40.0%
CCTTGTCATCAGCATAGATT+TGG - chr6_1:20342365-20342384 None:intergenic 40.0%
CCAAATCTATGCTGATGACA+AGG + chr6_1:20342362-20342381 Msa0878880:CDS 40.0%
ACAAGAGCTCACATAACAGT+TGG + chr6_1:20343246-20343265 Msa0878880:CDS 40.0%
GAGGTCCTTCATGAAACATT+TGG + chr6_1:20343304-20343323 Msa0878880:three_prime_UTR 40.0%
ATCAAGATCCATCTCCAAGA+GGG - chr6_1:20341785-20341804 None:intergenic 40.0%
TGGAGATGGATCTTGATGAA+TGG + chr6_1:20341788-20341807 Msa0878880:exon 40.0%
GGAGATGGATCTTGATGAAT+GGG + chr6_1:20341789-20341808 Msa0878880:exon 40.0%
TGGGAATCAATCTCTAGTGA+TGG + chr6_1:20341808-20341827 Msa0878880:CDS 40.0%
! CACTTTCTGATCCTTTTCCT+AGG - chr6_1:20341873-20341892 None:intergenic 40.0%
! TTGAGGTGTTACCAAGTTTG+AGG - chr6_1:20341972-20341991 None:intergenic 40.0%
TTATGGAAGTGGAGTCTTAG+TGG + chr6_1:20342234-20342253 Msa0878880:CDS 40.0%
! TGTTCTTTGGAAGCCAACAT+AGG + chr6_1:20342307-20342326 Msa0878880:CDS 40.0%
CCTTGTCATCAGCATAGATT+TGG - chr6_1:20342365-20342384 None:intergenic 40.0%
CCAAATCTATGCTGATGACA+AGG + chr6_1:20342362-20342381 Msa0878880:CDS 40.0%
ACAAGAGCTCACATAACAGT+TGG + chr6_1:20343246-20343265 Msa0878880:CDS 40.0%
GAGGTCCTTCATGAAACATT+TGG + chr6_1:20343304-20343323 Msa0878880:three_prime_UTR 40.0%
! CATCTCCAAGAGGGTGATTT+TGG - chr6_1:20341776-20341795 None:intergenic 45.0%
CAAAATCACCCTCTTGGAGA+TGG + chr6_1:20341774-20341793 Msa0878880:exon 45.0%
CATCAAGATCCATCTCCAAG+AGG - chr6_1:20341786-20341805 None:intergenic 45.0%
AAGTGGAGTCTTAGTGGTGT+TGG + chr6_1:20342240-20342259 Msa0878880:CDS 45.0%
GACTGAATCTAAGTGGATCG+TGG + chr6_1:20342991-20343010 Msa0878880:intron 45.0%
AGAGCTCACATAACAGTTGG+TGG + chr6_1:20343249-20343268 Msa0878880:CDS 45.0%
! CATCTCCAAGAGGGTGATTT+TGG - chr6_1:20341776-20341795 None:intergenic 45.0%
CAAAATCACCCTCTTGGAGA+TGG + chr6_1:20341774-20341793 Msa0878880:exon 45.0%
CATCAAGATCCATCTCCAAG+AGG - chr6_1:20341786-20341805 None:intergenic 45.0%
AAGTGGAGTCTTAGTGGTGT+TGG + chr6_1:20342240-20342259 Msa0878880:CDS 45.0%
GACTGAATCTAAGTGGATCG+TGG + chr6_1:20342991-20343010 Msa0878880:intron 45.0%
AGAGCTCACATAACAGTTGG+TGG + chr6_1:20343249-20343268 Msa0878880:CDS 45.0%
!!! AATCATATATATATATTTTT+TGG + chr6_1:20342410-20342429 Msa0878880:intron 5.0%
!!! AATCATATATATATATTTTT+TGG + chr6_1:20342410-20342429 Msa0878880:intron 5.0%
CTAAGTGGATCGTGGCTGCA+AGG + chr6_1:20342999-20343018 Msa0878880:intron 55.0%
CTAAGTGGATCGTGGCTGCA+AGG + chr6_1:20342999-20343018 Msa0878880:intron 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 20341618 20343526 20341618 ID=Msa0878880;Name=Msa0878880
chr6_1 mRNA 20341618 20343526 20341618 ID=Msa0878880-mRNA-1;Parent=Msa0878880;Name=Msa0878880-mRNA-1;_AED=0.04;_eAED=0.04;_QI=175|1|1|1|1|1|2|233|236
chr6_1 exon 20341618 20342383 20341618 ID=Msa0878880-mRNA-1:exon:5440;Parent=Msa0878880-mRNA-1
chr6_1 exon 20343174 20343526 20343174 ID=Msa0878880-mRNA-1:exon:5441;Parent=Msa0878880-mRNA-1
chr6_1 five_prime_UTR 20341618 20341792 20341618 ID=Msa0878880-mRNA-1:five_prime_utr;Parent=Msa0878880-mRNA-1
chr6_1 CDS 20341793 20342383 20341793 ID=Msa0878880-mRNA-1:cds;Parent=Msa0878880-mRNA-1
chr6_1 CDS 20343174 20343293 20343174 ID=Msa0878880-mRNA-1:cds;Parent=Msa0878880-mRNA-1
chr6_1 three_prime_UTR 20343294 20343526 20343294 ID=Msa0878880-mRNA-1:three_prime_utr;Parent=Msa0878880-mRNA-1
Gene Sequence

>Msa0878880

ATGGATCTTGATGAATGGGAATCAATCTCTAGTGATGGCTATATTGATTTCAATGAAGATGGTGAGAAAAAAAGTTTCCTAGGAAAAGGATCAGAAAGTGCTTTAGACATGGAATATTTGTATCCTTCACCACCAAGAAAACAAAACCAACTTGTCCCTTTACAAATTCCATTAGACCTCAAACTTGGTAACACCTCAAATGATGTTATGGTTCAAGACATCACAAAGAATCAATCTCTTGAAGCTGACCAAGAAGAAAATGTGTCACAAGTTTTCTTTAAGATTAAGGAAAATGAAATTGGTGACATGAAAATTGAATCACCAAAGTCAAGTAGTAGCAAAGAGTTTATTACTTCTCCAAGAATGATTATTGAGAAAGATGATTTTGGTGACAAAGAAGAGGATTCAAGTTGGGAAGAAGAGAATAATAGTGGTTTTAATTTATGGAAGTGGAGTCTTAGTGGTGTTGGTGCTATTTGTACTTTTGGTGTTGTTGCTGCTTCTATTTGTGTTTTGTTCTTTGGAAGCCAACATAGGAAAAAACTTCAGAAGGATCAGAAGAATAGGTTCCAAATCTATGCTGATGACAAGAGGATTAAGCAAGTGGTGCAGCATGCAACCAAATTGAATGAAGCAATTTCTGTTGTAAGAGGAGTTCCTATAACAAGAGCTCACATAACAGTTGGTGGCAACTATGATTTCTTTGATTGA
Protein sequence

>Msa0878880

MDLDEWESISSDGYIDFNEDGEKKSFLGKGSESALDMEYLYPSPPRKQNQLVPLQIPLDLKLGNTSNDVMVQDITKNQSLEADQEENVSQVFFKIKENEIGDMKIESPKSSSSKEFITSPRMIIEKDDFGDKEEDSSWEEENNSGFNLWKWSLSGVGAICTFGVVAASICVLFFGSQHRKKLQKDQKNRFQIYADDKRIKQVVQHATKLNEAISVVRGVPITRAHITVGGNYDFFD*