AlfalfaGEDB | Msa1040570

M. sativa cultivar zhongmu-4 / Msa1040570

KEGG: -
GO: -
PFAM: PF00295.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040570	XP_013450419.1	98.283	466	8	0	1	466	1	466	0.0	943

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040570	sp\|A7PZL3\|PGLR_VITVI	54.015	411	185	2	39	446	59	468	1.29e-159	463

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040570	A0A072U423	98.283	466	8	0	1	466	1	466	0.0	943

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0372090	Msa1040570	0.800575	1.351428e-48	-8.615850e-47
Msa0527010	Msa1040570	0.825738	3.980140e-54	-8.615850e-47
Msa0690170	Msa1040570	0.840639	7.704901e-58	-8.615850e-47
Msa0901860	Msa1040570	0.827224	1.760624e-54	-8.615850e-47
Msa1040570	Msa1127700	0.950943	5.771975e-109	-8.615850e-47
Msa1040570	Msa1173020	0.800802	1.214552e-48	-8.615850e-47
Msa1040570	Msa1261340	0.805987	1.023813e-49	-8.615850e-47
Msa1040570	Msa1261360	0.808503	2.999555e-50	-8.615850e-47
Msa1040570	Msa1261370	0.811748	5.993520e-51	-8.615850e-47
Msa1040570	Msa1261400	0.804745	1.864403e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040570	MtrunA17_Chr7g0270821	97.840	463	10	0	1	463	1	463	0.0	931
Msa1040570	MtrunA17_Chr1g0193961	79.449	472	90	2	1	466	1	471	0.0	761
Msa1040570	MtrunA17_Chr8g0387391	56.750	400	170	1	39	435	40	439	1.65e-166	477
Msa1040570	MtrunA17_Chr4g0067811	57.538	398	167	1	37	432	34	431	1.37e-164	472
Msa1040570	MtrunA17_Chr2g0295241	52.871	418	194	2	39	454	33	449	1.31e-162	467
Msa1040570	MtrunA17_Chr1g0202651	55.750	400	174	1	39	435	51	450	6.19e-161	463
Msa1040570	MtrunA17_Chr3g0095221	51.802	444	206	4	4	443	10	449	1.45e-157	454
Msa1040570	MtrunA17_Chr8g0348491	52.184	435	202	3	19	450	33	464	5.45e-157	453
Msa1040570	MtrunA17_Chr7g0248451	53.790	409	185	2	39	444	51	458	6.41e-156	451
Msa1040570	MtrunA17_Chr7g0255311	53.623	414	182	3	32	435	48	461	2.00e-155	450

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040570	AT3G62110.1	68.499	473	140	6	1	466	1	471	0.0	656
Msa1040570	AT3G62110.2	68.499	473	140	6	1	466	1	471	0.0	656
Msa1040570	AT4G23500.1	55.500	400	175	1	39	435	64	463	1.68e-161	466
Msa1040570	AT3G61490.5	56.171	397	171	1	39	432	56	452	2.36e-160	463
Msa1040570	AT3G61490.2	56.171	397	171	1	39	432	41	437	2.53e-160	462
Msa1040570	AT3G61490.3	56.171	397	171	1	39	432	41	437	2.53e-160	462
Msa1040570	AT3G61490.1	56.171	397	171	1	39	432	41	437	2.53e-160	462
Msa1040570	AT3G61490.4	56.171	397	171	1	39	432	154	550	5.59e-160	466
Msa1040570	AT4G23820.1	52.045	440	208	2	8	445	6	444	1.44e-157	454
Msa1040570	AT3G16850.1	54.348	414	187	1	28	441	25	436	6.30e-157	453

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Find 165 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGGGTGGGATGAATA+TGG	0.312527	7_1:-77949258	Msa1040570:CDS
AAACGGATCTCATTCATATG+AGG	0.520228	7_1:-77951461	Msa1040570:exon
AAAGCAAAATGAGTGTTTAA+AGG	0.362531	7_1:-77948018	Msa1040570:three_prime_UTR
AAAGTGATGAAGTTGTTGTT+GGG	0.528621	7_1:+77951830	None:intergenic
AACACAGATGGGATCGATCC+AGG	0.522022	7_1:-77949572	Msa1040570:intron
AACAGTCTCTATCAATGATT+TGG	0.257021	7_1:-77951675	Msa1040570:five_prime_UTR
AACAGTCTGAACAATGGTCG+GGG	0.611279	7_1:+77948716	None:intergenic
AACTAAACTTCCTATAAAGG+TGG	0.585743	7_1:-77948161	Msa1040570:three_prime_UTR
AAGACTTCACCTGGAAGAGG+TGG	0.607219	7_1:-77949072	Msa1040570:CDS
AATAGTAACAGTCTGAACAA+TGG	0.664300	7_1:+77948710	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAGTCTCTATCAATGATT+TGG	-	chr7_1:77948158-77948177	Msa1040570:three_prime_UTR	30.0%
ACAGTCTCTATCAATGATTT+GGG	-	chr7_1:77948159-77948178	Msa1040570:three_prime_UTR	30.0%
TCAGTAATACTAACACTATG+AGG	+	chr7_1:77948997-77949016	None:intergenic	30.0%
CTTTGTCTGAGAAAGAATTT+AGG	+	chr7_1:77949083-77949102	None:intergenic	30.0%
CTAAATTCTTTCTCAGACAA+AGG	-	chr7_1:77949081-77949100	Msa1040570:CDS	30.0%
ACTAATGAGATCAAAACTAC+CGG	+	chr7_1:77949145-77949164	None:intergenic	30.0%
GAGTATTTGTACCCAAAAAA+AGG	-	chr7_1:77949372-77949391	Msa1040570:intron	30.0%
TCTAACTTGAAGCTAGAATT+CGG	-	chr7_1:77949593-77949612	Msa1040570:CDS	30.0%
TTGACTGATGTTATCATAAC+AGG	-	chr7_1:77949935-77949954	Msa1040570:CDS	30.0%
TTCTATTGCTGTCTAAATGA+AGG	-	chr7_1:77950015-77950034	Msa1040570:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	77947953	77951902	77947953	ID=Msa1040570;Name=Msa1040570
chr7_1	mRNA	77947953	77951902	77947953	ID=Msa1040570-mRNA-1;Parent=Msa1040570;Name=Msa1040570-mRNA-1;_AED=0.08;_eAED=0.08;_QI=436\|1\|1\|1\|1\|1\|5\|695\|466
chr7_1	exon	77947953	77949345	77947953	ID=Msa1040570-mRNA-1:exon:20706;Parent=Msa1040570-mRNA-1
chr7_1	exon	77949573	77949818	77949573	ID=Msa1040570-mRNA-1:exon:20705;Parent=Msa1040570-mRNA-1
chr7_1	exon	77949899	77950019	77949899	ID=Msa1040570-mRNA-1:exon:20704;Parent=Msa1040570-mRNA-1
chr7_1	exon	77950643	77950960	77950643	ID=Msa1040570-mRNA-1:exon:20703;Parent=Msa1040570-mRNA-1
chr7_1	exon	77951449	77951902	77951449	ID=Msa1040570-mRNA-1:exon:20702;Parent=Msa1040570-mRNA-1
chr7_1	five_prime_UTR	77951467	77951902	77951467	ID=Msa1040570-mRNA-1:five_prime_utr;Parent=Msa1040570-mRNA-1
chr7_1	CDS	77951449	77951466	77951449	ID=Msa1040570-mRNA-1:cds;Parent=Msa1040570-mRNA-1
chr7_1	CDS	77950643	77950960	77950643	ID=Msa1040570-mRNA-1:cds;Parent=Msa1040570-mRNA-1
chr7_1	CDS	77949899	77950019	77949899	ID=Msa1040570-mRNA-1:cds;Parent=Msa1040570-mRNA-1
chr7_1	CDS	77949573	77949818	77949573	ID=Msa1040570-mRNA-1:cds;Parent=Msa1040570-mRNA-1
chr7_1	CDS	77948648	77949345	77948648	ID=Msa1040570-mRNA-1:cds;Parent=Msa1040570-mRNA-1
chr7_1	three_prime_UTR	77947953	77948647	77947953	ID=Msa1040570-mRNA-1:three_prime_utr;Parent=Msa1040570-mRNA-1

Gene Sequence

>Msa1040570

ATGAGGAGACCTTCTACATTTGTGGATGTGTTTCTGGTACTTGCATTGTTCTGTTGTAGCTCATGGAAAGTGTGGAGTAGCACACTATGCAAAGAGACAAACTTGGACAAAGTTAGGCCTCATAGTGTTAGTATTACTGAATTTGGTGCAGTTGGCGATGGGATCACTCTCAACACAAAAGCATTTCAGAATGCGATTTTCTACCTAAATTCTTTCTCAGACAAAGGTGGAGCCAAGCTCTTTGTTCCAGCCGGTCGGTGGTTAACCGGTAGTTTTGATCTCATTAGTCACCTAACTTTGTGGTTGGACAAGGATGCAATAATTCTTGGATCAACAAACTCTGAGGATTGGCCGGTTGTTGATCCTCTACCGTCTTATGGGCGAGGAAGGGAGTTGCCGGGTGGAAGGCATAGGAGTCTCATCTATGGATGTAATTTGACTGATGTTATCATAACAGGTAATGAGGGGATTATCGATGGTCAAGGGAGTATCTGGTGGAGCATGTTTAGGAACAAAACTCTGGATTATACGCGTCCGCATTTGGTAGAATTGATGAATTCAACCGGGATTCTTATTTCAAATTTAACCTTCTTGAATTCTCCATTTTGGACTATTCATCCTGTATATTGCAGCCAAGTTACAGTTCAGAATGTCACGATCCTTGCTCCTCTTGATTCACCAAACACAGATGGGATCGATCCAGACTCTTCTGATGACGTGTGTATTGAAGACTGTTATATAAGCACTGGCGATGATCTGATTGCCATCAAAAGTGGGTGGGATGAATATGGAATTGCATTCGGTCGTCCCAGCACAAATATTGTCATCCACAGGCTTGTTGGAAAAACTCACACAAGCGCAGGGATAGCTATTGGAAGTGAGATGTCGGGTGGTGTATCAGATGTTCGTGCGGAAGATATTCACTTTTATGATTCATATACTGGAATCAGAATAAAGACTTCACCTGGAAGAGGTGGTTATGTTAGAAACATCTATGTCACTAACATGACCTTGGCTAATGTTGATATTGCTATTCGGTTCACCGGCTCATATGGTGATCATCCAGATGATGCTTATGACCCAAATGCTTTACCAGTAATTGAAAAGATTACCATCGAGGATGTGATAGGTGAAAAGATCACAAAAGCAGGTCTTATAGAAGGTATAGAAGGTGACAATTTCGTCAACATATGCTTATCAAACATCATCCTCAATGTGAGCTCAAACTATCCATGGAACTGCTCTAACATTAGAGGATACTCTGACATGGTTTTTCCTGAAGCTTGTGAGCCGCTCAAGGAGAGGATATTCCCCGACCATTGTTCAGACTGTTACTATTTGTCGAATCACCAACAAAGTTCAAATAATAAAAACAGAGGTGCTTGGTTTATGTCTTGGTAA

Protein sequence

>Msa1040570

MRRPSTFVDVFLVLALFCCSSWKVWSSTLCKETNLDKVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFSDKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAIILGSTNSEDWPVVDPLPSYGRGRELPGGRHRSLIYGCNLTDVIITGNEGIIDGQGSIWWSMFRNKTLDYTRPHLVELMNSTGILISNLTFLNSPFWTIHPVYCSQVTVQNVTILAPLDSPNTDGIDPDSSDDVCIEDCYISTGDDLIAIKSGWDEYGIAFGRPSTNIVIHRLVGKTHTSAGIAIGSEMSGGVSDVRAEDIHFYDSYTGIRIKTSPGRGGYVRNIYVTNMTLANVDIAIRFTGSYGDHPDDAYDPNALPVIEKITIEDVIGEKITKAGLIEGIEGDNFVNICLSNIILNVSSNYPWNCSNIRGYSDMVFPEACEPLKERIFPDHCSDCYYLSNHQQSSNNKNRGAWFMSW*