Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0372090 | RHN69041.1 | 98.635 | 513 | 2 | 3 | 1 | 510 | 1 | 511 | 0.0 | 1031 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0372090 | sp|P52417|GLGS2_VICFA | 95.508 | 512 | 18 | 2 | 4 | 510 | 1 | 512 | 0.0 | 956 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0372090 | A0A396IWK0 | 98.635 | 513 | 2 | 3 | 1 | 510 | 1 | 511 | 0.0 | 1031 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0073820 | Msa0372090 | 0.816428 | 5.558985e-52 | -8.615850e-47 |
| Msa0091550 | Msa0372090 | 0.801104 | 1.053873e-48 | -8.615850e-47 |
| Msa0094700 | Msa0372090 | 0.819007 | 1.455699e-52 | -8.615850e-47 |
| Msa0143360 | Msa0372090 | 0.814147 | 1.786468e-51 | -8.615850e-47 |
| Msa0171780 | Msa0372090 | 0.822577 | 2.199550e-53 | -8.615850e-47 |
| Msa0171930 | Msa0372090 | 0.815428 | 9.292770e-52 | -8.615850e-47 |
| Msa0185550 | Msa0372090 | 0.837729 | 4.377048e-57 | -8.615850e-47 |
| Msa0194570 | Msa0372090 | 0.811915 | 5.512652e-51 | -8.615850e-47 |
| Msa0214730 | Msa0372090 | 0.836483 | 9.111704e-57 | -8.615850e-47 |
| Msa0229320 | Msa0372090 | 0.805484 | 1.305288e-49 | -8.615850e-47 |
| Msa0236350 | Msa0372090 | 0.812168 | 4.854729e-51 | -8.615850e-47 |
| Msa0372090 | Msa0374070 | 0.813235 | 2.836173e-51 | -8.615850e-47 |
| Msa0372090 | Msa0380420 | 0.847327 | 1.240200e-59 | -8.615850e-47 |
| Msa0372090 | Msa0420700 | 0.834734 | 2.525277e-56 | -8.615850e-47 |
| Msa0372090 | Msa0423250 | 0.810711 | 1.006170e-50 | -8.615850e-47 |
| Msa0372090 | Msa0434630 | 0.801759 | 7.737776e-49 | -8.615850e-47 |
| Msa0372090 | Msa0466730 | 0.934079 | 7.031993e-96 | -8.615850e-47 |
| Msa0372090 | Msa0466930 | 0.856684 | 2.724084e-62 | -8.615850e-47 |
| Msa0372090 | Msa0469390 | 0.817466 | 3.250644e-52 | -8.615850e-47 |
| Msa0372090 | Msa0476150 | 0.838216 | 3.279807e-57 | -8.615850e-47 |
| Msa0372090 | Msa0476180 | 0.801688 | 7.999993e-49 | -8.615850e-47 |
| Msa0372090 | Msa0486200 | 0.801672 | 8.062109e-49 | -8.615850e-47 |
| Msa0372090 | Msa0515090 | 0.824983 | 6.003883e-54 | -8.615850e-47 |
| Msa0372090 | Msa0583810 | 0.807420 | 5.098693e-50 | -8.615850e-47 |
| Msa0372090 | Msa0587060 | 0.808649 | 2.791312e-50 | -8.615850e-47 |
| Msa0372090 | Msa0626890 | 0.826600 | 2.481274e-54 | -8.615850e-47 |
| Msa0372090 | Msa0689400 | 0.809628 | 1.722775e-50 | -8.615850e-47 |
| Msa0372090 | Msa0709480 | 0.817186 | 3.757478e-52 | -8.615850e-47 |
| Msa0372090 | Msa0720840 | 0.800556 | 1.363466e-48 | -8.615850e-47 |
| Msa0372090 | Msa0790830 | 0.816697 | 4.837475e-52 | -8.615850e-47 |
| Msa0372090 | Msa0805940 | 0.806991 | 6.286831e-50 | -8.615850e-47 |
| Msa0372090 | Msa0814760 | 0.807505 | 4.892801e-50 | -8.615850e-47 |
| Msa0372090 | Msa0946650 | 0.816236 | 6.136249e-52 | -8.615850e-47 |
| Msa0372090 | Msa0968010 | 0.860671 | 1.755225e-63 | -8.615850e-47 |
| Msa0372090 | Msa1011210 | 0.801031 | 1.090744e-48 | -8.615850e-47 |
| Msa0372090 | Msa1011240 | 0.835613 | 1.515267e-56 | -8.615850e-47 |
| Msa0372090 | Msa1028460 | 0.809473 | 1.859595e-50 | -8.615850e-47 |
| Msa0372090 | Msa1030440 | 0.800503 | 1.397738e-48 | -8.615850e-47 |
| Msa0372090 | Msa1040570 | 0.800575 | 1.351428e-48 | -8.615850e-47 |
| Msa0372090 | Msa1042380 | 0.817226 | 3.679871e-52 | -8.615850e-47 |
| Msa0372090 | Msa1084490 | 0.826005 | 3.439576e-54 | -8.615850e-47 |
| Msa0372090 | Msa1087500 | 0.812618 | 3.873013e-51 | -8.615850e-47 |
| Msa0372090 | Msa1099030 | 0.801025 | 1.093981e-48 | -8.615850e-47 |
| Msa0372090 | Msa1121630 | 0.800880 | 1.171258e-48 | -8.615850e-47 |
| Msa0372090 | Msa1125100 | 0.814812 | 1.273218e-51 | -8.615850e-47 |
| Msa0372090 | Msa1125150 | 0.815424 | 9.309549e-52 | -8.615850e-47 |
| Msa0372090 | Msa1125780 | 0.822686 | 2.074185e-53 | -8.615850e-47 |
| Msa0372090 | Msa1125950 | 0.817301 | 3.540912e-52 | -8.615850e-47 |
| Msa0372090 | Msa1156210 | 0.818244 | 2.169243e-52 | -8.615850e-47 |
| Msa0372090 | Msa1171340 | 0.810501 | 1.117189e-50 | -8.615850e-47 |
| Msa0372090 | Msa1173020 | 0.800498 | 1.401045e-48 | -8.615850e-47 |
| Msa0372090 | Msa1183730 | 0.804202 | 2.418696e-49 | -8.615850e-47 |
| Msa0372090 | Msa1183850 | 0.817292 | 3.557123e-52 | -8.615850e-47 |
| Msa0372090 | Msa1208980 | 0.809908 | 1.499738e-50 | -8.615850e-47 |
| Msa0372090 | Msa1211040 | 0.805288 | 1.435371e-49 | -8.615850e-47 |
| Msa0372090 | Msa1217170 | 0.811389 | 7.175408e-51 | -8.615850e-47 |
| Msa0372090 | Msa1244260 | 0.809042 | 2.300202e-50 | -8.615850e-47 |
| Msa0372090 | Msa1261340 | 0.804453 | 2.144985e-49 | -8.615850e-47 |
| Msa0372090 | Msa1261360 | 0.803207 | 3.891776e-49 | -8.615850e-47 |
| Msa0372090 | Msa1261370 | 0.808544 | 2.940331e-50 | -8.615850e-47 |
| Msa0372090 | Msa1261400 | 0.800211 | 1.602956e-48 | -8.615850e-47 |
| Msa0372090 | Msa1267330 | 0.806366 | 8.518220e-50 | -8.615850e-47 |
| Msa0372090 | Msa1375630 | 0.844763 | 6.180028e-59 | -8.615850e-47 |
| Msa0372090 | Msa1376530 | 0.834143 | 3.553226e-56 | -8.615850e-47 |
| Msa0372090 | Msa1408770 | 0.818854 | 1.576865e-52 | -8.615850e-47 |
| Msa0372090 | Msa1424240 | 0.810959 | 8.891542e-51 | -8.615850e-47 |
| Msa0372090 | Msa1455120 | 0.804315 | 2.291893e-49 | -8.615850e-47 |
| Msa0258380 | Msa0372090 | 0.802738 | 4.866231e-49 | -8.615850e-47 |
| Msa0266010 | Msa0372090 | 0.863088 | 3.194158e-64 | -8.615850e-47 |
| Msa0274870 | Msa0372090 | 0.814357 | 1.605634e-51 | -8.615850e-47 |
| Msa0285740 | Msa0372090 | 0.806654 | 7.407170e-50 | -8.615850e-47 |
| Msa0303950 | Msa0372090 | 0.853099 | 2.987951e-61 | -8.615850e-47 |
| Msa0314790 | Msa0372090 | 0.807323 | 5.346537e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0372090 | MtrunA17_Chr3g0120471 | 98.635 | 513 | 2 | 3 | 1 | 510 | 1 | 511 | 0.0 | 1031 |
| Msa0372090 | MtrunA17_Chr5g0447341 | 89.515 | 515 | 49 | 3 | 1 | 510 | 1 | 515 | 0.0 | 902 |
| Msa0372090 | MtrunA17_Chr4g0074531 | 53.968 | 504 | 205 | 9 | 27 | 510 | 25 | 521 | 0.0 | 536 |
| Msa0372090 | MtrunA17_Chr7g0271011 | 51.336 | 524 | 220 | 13 | 11 | 510 | 24 | 536 | 0.0 | 518 |
| Msa0372090 | MtrunA17_Chr3g0141761 | 55.388 | 464 | 179 | 9 | 57 | 510 | 85 | 530 | 1.16e-179 | 515 |
| Msa0372090 | MtrunA17_Chr4g0035171 | 50.415 | 482 | 220 | 9 | 45 | 510 | 50 | 528 | 6.06e-167 | 482 |
| Msa0372090 | MtrunA17_Chr0c30g0494071 | 45.598 | 443 | 174 | 13 | 82 | 510 | 26 | 415 | 6.91e-117 | 350 |
| Msa0372090 | MtrunA17_Chr3g0144741 | 60.241 | 249 | 93 | 4 | 81 | 324 | 84 | 331 | 6.75e-95 | 292 |
| Msa0372090 | MtrunA17_Chr3g0144731 | 50.000 | 152 | 73 | 1 | 362 | 510 | 10 | 161 | 5.66e-47 | 160 |
| Msa0372090 | MtrunA17_Chr4g0077071 | 88.750 | 80 | 6 | 1 | 345 | 421 | 2 | 81 | 2.16e-42 | 145 |
| Msa0372090 | MtrunA17_Chr6g0454161 | 87.273 | 55 | 7 | 0 | 414 | 468 | 121 | 175 | 2.36e-23 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0372090 | AT5G48300.1 | 86.731 | 520 | 59 | 5 | 1 | 510 | 1 | 520 | 0.0 | 887 |
| Msa0372090 | AT5G19220.1 | 52.724 | 514 | 223 | 9 | 14 | 510 | 12 | 522 | 0.0 | 540 |
| Msa0372090 | AT1G27680.1 | 57.306 | 438 | 177 | 5 | 81 | 510 | 83 | 518 | 0.0 | 525 |
| Msa0372090 | AT4G39210.2 | 49.275 | 483 | 223 | 8 | 45 | 510 | 44 | 521 | 2.17e-166 | 481 |
| Msa0372090 | AT4G39210.1 | 49.275 | 483 | 223 | 8 | 45 | 510 | 44 | 521 | 2.17e-166 | 481 |
| Msa0372090 | AT2G21590.2 | 47.438 | 527 | 241 | 10 | 14 | 510 | 3 | 523 | 8.52e-164 | 474 |
| Msa0372090 | AT2G21590.3 | 47.438 | 527 | 241 | 10 | 14 | 510 | 3 | 523 | 8.52e-164 | 474 |
| Msa0372090 | AT2G21590.5 | 47.438 | 527 | 241 | 10 | 14 | 510 | 3 | 523 | 8.52e-164 | 474 |
| Msa0372090 | AT2G21590.4 | 47.438 | 527 | 241 | 10 | 14 | 510 | 3 | 523 | 8.52e-164 | 474 |
| Msa0372090 | AT2G21590.7 | 47.438 | 527 | 241 | 10 | 14 | 510 | 3 | 523 | 8.52e-164 | 474 |
| Msa0372090 | AT2G21590.1 | 47.438 | 527 | 241 | 10 | 14 | 510 | 3 | 523 | 8.52e-164 | 474 |
| Msa0372090 | AT2G21590.6 | 47.438 | 527 | 241 | 10 | 14 | 510 | 3 | 523 | 8.52e-164 | 474 |
| Msa0372090 | AT1G05610.2 | 45.940 | 468 | 233 | 7 | 50 | 510 | 28 | 482 | 2.21e-141 | 416 |
| Msa0372090 | AT1G05610.1 | 45.708 | 466 | 231 | 7 | 50 | 510 | 28 | 476 | 2.23e-141 | 416 |
Find 136 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGTTGATACTACTATTT+TGG | 0.118247 | 3_1:-70396149 | Msa0372090:intron |
| ATGCGGTGAGGCAATATTTA+TGG | 0.227198 | 3_1:-70396495 | Msa0372090:CDS |
| TAATGTGATTTGCTTCTTCT+AGG | 0.233733 | 3_1:-70394417 | Msa0372090:three_prime_UTR |
| TATTGAGGACACATTGTTAA+TGG | 0.236148 | 3_1:-70395324 | Msa0372090:CDS |
| CTTATTTATACGATGGATAC+TGG | 0.239223 | 3_1:-70395847 | Msa0372090:CDS |
| GCTTTCAACTGTTCTCCTTT+TGG | 0.240994 | 3_1:+70396265 | None:intergenic |
| AATGCCTTATATTGCTAGTA+TGG | 0.245338 | 3_1:-70396101 | Msa0372090:CDS |
| TTTCTGGTGCACGTTATATT+TGG | 0.248459 | 3_1:-70394634 | Msa0372090:three_prime_UTR |
| GGCTTTCTATAATGCAAATC+TGG | 0.253113 | 3_1:-70395804 | Msa0372090:CDS |
| ACACCTTCCAGCAGTGAAAA+TGG | 0.265690 | 3_1:+70394686 | None:intergenic |
| CTGTTTAGGCAGTTGCTAAC+AGG | 0.290907 | 3_1:+70396798 | None:intergenic |
| TTTCGAGGAGCACAATGTTT+TGG | 0.304906 | 3_1:-70396470 | Msa0372090:CDS |
| GATATCACTGACAGTGTTAT+TGG | 0.317250 | 3_1:-70395576 | Msa0372090:CDS |
| TTCCTGGTGCAAACGACTTC+GGG | 0.322270 | 3_1:-70396027 | Msa0372090:CDS |
| CTTATTACCTGGAACCAGTT+TGG | 0.329824 | 3_1:+70396630 | None:intergenic |
| ATTGAGGACACATTGTTAAT+GGG | 0.348660 | 3_1:-70395323 | Msa0372090:CDS |
| ATTCCTGGTGCAACCGAACT+TGG | 0.354432 | 3_1:-70395995 | Msa0372090:CDS |
| TTGGAATATTTAGTTCTTGC+TGG | 0.362764 | 3_1:-70396451 | Msa0372090:CDS |
| TGAGAATCCAAACTGGTTCC+AGG | 0.364521 | 3_1:-70396637 | Msa0372090:intron |
| ATTGACAAGAATGCTAGAAT+TGG | 0.372887 | 3_1:-70395095 | Msa0372090:CDS |
| TTTGCCCGCTTCTTGGTCAA+TGG | 0.378602 | 3_1:+70396864 | None:intergenic |
| CTGCTCCGCGACAAGTTTCC+TGG | 0.384999 | 3_1:-70396043 | Msa0372090:CDS |
| GGCAGTGTTCCGATTGGTAT+TGG | 0.386912 | 3_1:-70395146 | Msa0372090:CDS |
| TCTTTGATATGTTACTGTTT+AGG | 0.387072 | 3_1:+70396784 | None:intergenic |
| ACCTCGAAAAGCCATCTATA+TGG | 0.387393 | 3_1:-70398065 | Msa0372090:exon |
| ATACCCATACTAGCAATATA+AGG | 0.403964 | 3_1:+70396097 | None:intergenic |
| CACCTTCCAGCAGTGAAAAT+GGG | 0.408003 | 3_1:+70394687 | None:intergenic |
| GCAAGAATTCTCATATCAAA+AGG | 0.408139 | 3_1:-70395124 | Msa0372090:CDS |
| TCAATTCAGCATCCTTGAAC+AGG | 0.414585 | 3_1:-70396743 | Msa0372090:CDS |
| ATGATGTAAATTTAATTATC+CGG | 0.421165 | 3_1:-70394573 | Msa0372090:three_prime_UTR |
| TTCGGGAGTGAAGTTATTCC+TGG | 0.424087 | 3_1:-70396010 | Msa0372090:CDS |
| AGCCATCTATATGGCTTCAA+TGG | 0.429672 | 3_1:-70398056 | Msa0372090:exon |
| TGGAACCAGTTTGGATTCTC+AGG | 0.429926 | 3_1:+70396639 | None:intergenic |
| TCTTACTCTCATCCCAAGTT+CGG | 0.430739 | 3_1:+70395982 | None:intergenic |
| GAAGCACGTGCCACTGCATT+CGG | 0.431857 | 3_1:-70396337 | Msa0372090:CDS |
| TCAGCATCAAGCATCTTAGA+TGG | 0.434595 | 3_1:+70395597 | None:intergenic |
| GCAAGAAGAAGAGAAAACTA+TGG | 0.442679 | 3_1:-70397908 | Msa0372090:CDS |
| CAACTAACTCTGCTAGCATC+TGG | 0.445818 | 3_1:+70397818 | None:intergenic |
| GCCCTTCATTGTTTCTCCCA+AGG | 0.449571 | 3_1:-70397879 | Msa0372090:CDS |
| GTGCTTGGTATTATACTTGG+AGG | 0.450420 | 3_1:-70396909 | Msa0372090:CDS |
| TACCGAGGTTGGGTGTAGAT+TGG | 0.453915 | 3_1:+70395627 | None:intergenic |
| AGCCATTGAAGCCATATAGA+TGG | 0.460362 | 3_1:+70398054 | None:intergenic |
| AGTGTGCTTGGTATTATACT+TGG | 0.461794 | 3_1:-70396912 | Msa0372090:CDS |
| GCAAAACCAGCTGTTCCTCT+TGG | 0.462674 | 3_1:-70396846 | Msa0372090:CDS |
| CATAATCCATTCGATACAAA+TGG | 0.464442 | 3_1:+70396425 | None:intergenic |
| TTTCCTGGTGCAAACGACTT+CGG | 0.467233 | 3_1:-70396028 | Msa0372090:CDS |
| CTCCCGAAGTCGTTTGCACC+AGG | 0.468057 | 3_1:+70396025 | None:intergenic |
| ACATTAAGTTACCTAAAATC+TGG | 0.468640 | 3_1:+70395761 | None:intergenic |
| TTTGTAGTTTATTATCAAAA+GGG | 0.474274 | 3_1:-70394505 | Msa0372090:three_prime_UTR |
| TGCTTGGTATTATACTTGGA+GGG | 0.476032 | 3_1:-70396908 | Msa0372090:CDS |
| TTCCTCTTGGAGCAAACTAT+AGG | 0.479293 | 3_1:-70396833 | Msa0372090:CDS |
| CGTTGAAATAGAAAAGAAAA+AGG | 0.479555 | 3_1:+70394384 | None:intergenic |
| TCTAATGAAGATTGATGAAG+AGG | 0.482467 | 3_1:-70396314 | Msa0372090:CDS |
| AGTTACCTAAAATCTGGTAC+TGG | 0.484700 | 3_1:+70395767 | None:intergenic |
| TCTTCTTCTTGCTGAAACTG+TGG | 0.487806 | 3_1:+70397919 | None:intergenic |
| AAAATTCATCATTCTGTCGT+TGG | 0.491625 | 3_1:-70395377 | Msa0372090:CDS |
| ATGGAGGCAAATACCGAGGT+TGG | 0.492596 | 3_1:+70395616 | None:intergenic |
| TATAGAGTAGAAGACTCTTT+CGG | 0.496006 | 3_1:-70394601 | Msa0372090:three_prime_UTR |
| TTGGAATCAGAAACAGCCTT+GGG | 0.500304 | 3_1:+70397863 | None:intergenic |
| TTTGCTCCAAGAGGAACAGC+TGG | 0.502679 | 3_1:+70396840 | None:intergenic |
| TGGGATTGTCACAGTAATCA+AGG | 0.507999 | 3_1:-70394785 | Msa0372090:CDS |
| GTGGCACGTGCTTCATCCAT+TGG | 0.509798 | 3_1:+70396346 | None:intergenic |
| ACGGGACAAGTGCCTGTTCA+AGG | 0.513295 | 3_1:+70396731 | None:intergenic |
| TGCTGCAGACAGATGCTGAT+AGG | 0.514976 | 3_1:-70395187 | Msa0372090:intron |
| GCTTGGTATTATACTTGGAG+GGG | 0.521975 | 3_1:-70396907 | Msa0372090:CDS |
| TGGAGGCAAATACCGAGGTT+GGG | 0.523382 | 3_1:+70395617 | None:intergenic |
| TTATCCATTGACCAAGAAGC+GGG | 0.524482 | 3_1:-70396868 | Msa0372090:CDS |
| ATCCCAAGTTCGGTTGCACC+AGG | 0.525786 | 3_1:+70395992 | None:intergenic |
| CTTGGTATTATACTTGGAGG+GGG | 0.527339 | 3_1:-70396906 | Msa0372090:CDS |
| GAATTTGCCGAGAAGCCAAA+AGG | 0.527957 | 3_1:-70396280 | Msa0372090:CDS |
| GAGATTTATACAAGCACATA+GGG | 0.529017 | 3_1:-70396401 | Msa0372090:CDS |
| GTAGTTTATTATCAAAAGGG+TGG | 0.529105 | 3_1:-70394502 | Msa0372090:three_prime_UTR |
| GTGTCTTTGAAAGTTGCAAA+AGG | 0.530776 | 3_1:+70394340 | None:intergenic |
| CAAGAATTCTCATATCAAAA+GGG | 0.532293 | 3_1:-70395123 | Msa0372090:CDS |
| TTCCTGGTGCAACCGAACTT+GGG | 0.535911 | 3_1:-70395994 | Msa0372090:CDS |
| CAATGGATAAAGACGCGTCC+CGG | 0.540169 | 3_1:+70396881 | None:intergenic |
| AGAGATTTATACAAGCACAT+AGG | 0.540805 | 3_1:-70396402 | Msa0372090:CDS |
| AGAGTCCTGAGAATCCAAAC+TGG | 0.541444 | 3_1:-70396644 | Msa0372090:CDS |
| GAAGATGAGGAAGAAGAAGA+AGG | 0.545219 | 3_1:+70398010 | None:intergenic |
| GCTTTCTATAATGCAAATCT+GGG | 0.546112 | 3_1:-70395803 | Msa0372090:CDS |
| GTGCAAGCTTATTTATACGA+TGG | 0.548370 | 3_1:-70395854 | Msa0372090:CDS |
| CCATGTTGCTCGCATATGCA+CGG | 0.549892 | 3_1:+70396712 | None:intergenic |
| TGTTTAGGCAGTTGCTAACA+GGG | 0.550516 | 3_1:+70396799 | None:intergenic |
| CGTGCATATGCGAGCAACAT+GGG | 0.553230 | 3_1:-70396711 | Msa0372090:CDS |
| ATCAGAAGGTGCAATTATTG+AGG | 0.553577 | 3_1:-70395339 | Msa0372090:CDS |
| TTTAGATGATGAAGAAGATG+AGG | 0.554142 | 3_1:+70397997 | None:intergenic |
| GAACAACTCTGCTTCCGCGT+TGG | 0.556317 | 3_1:-70394658 | Msa0372090:three_prime_UTR |
| ATCCATTGGCAATGCAGCAA+CGG | 0.557333 | 3_1:+70396360 | None:intergenic |
| CACCGTTGCTGCATTGCCAA+TGG | 0.558190 | 3_1:-70396362 | Msa0372090:CDS |
| GAATGAGAGGTTACGTGCAA+TGG | 0.561185 | 3_1:+70397973 | None:intergenic |
| TTTGGAATCAGAAACAGCCT+TGG | 0.565050 | 3_1:+70397862 | None:intergenic |
| ATGCCTTATATTGCTAGTAT+GGG | 0.567877 | 3_1:-70396100 | Msa0372090:CDS |
| TTATTTATACGATGGATACT+GGG | 0.571162 | 3_1:-70395846 | Msa0372090:CDS |
| AGCCTTGGGAGAAACAATGA+AGG | 0.573342 | 3_1:+70397877 | None:intergenic |
| CAATGTGCAAGAAGCTGCAA+GGG | 0.577474 | 3_1:-70394833 | Msa0372090:CDS |
| GAATTCTTGCCAATACCAAT+CGG | 0.579260 | 3_1:+70395137 | None:intergenic |
| GGTGCACGTTATATTTGGCT+CGG | 0.579501 | 3_1:-70394629 | Msa0372090:three_prime_UTR |
| TTGAGGACACATTGTTAATG+GGG | 0.585614 | 3_1:-70395322 | Msa0372090:CDS |
| GGAAGACATCGGTACAATTG+AGG | 0.587153 | 3_1:-70395825 | Msa0372090:CDS |
| ACAATGTGCAAGAAGCTGCA+AGG | 0.590355 | 3_1:-70394834 | Msa0372090:CDS |
| TGGTGACCATTTGTATCGAA+TGG | 0.590390 | 3_1:-70396431 | Msa0372090:CDS |
| CATGTTGCTCGCATATGCAC+GGG | 0.591727 | 3_1:+70396713 | None:intergenic |
| AGCCTATAGTTTGCTCCAAG+AGG | 0.591774 | 3_1:+70396831 | None:intergenic |
| ATGGCTTCAATGGCTTCGAT+CGG | 0.602135 | 3_1:-70398046 | Msa0372090:CDS |
| CTGCGATCTTGCATATCAGA+AGG | 0.603808 | 3_1:-70395353 | Msa0372090:CDS |
| ACCTTCCAGCAGTGAAAATG+GGG | 0.614673 | 3_1:+70394688 | None:intergenic |
| GCTAAAGGCAGTGTTCCGAT+TGG | 0.615135 | 3_1:-70395152 | Msa0372090:CDS |
| CTAATGAAGATTGATGAAGA+GGG | 0.625579 | 3_1:-70396313 | Msa0372090:CDS |
| GAGGAAATAGTATACTAGAG+AGG | 0.626379 | 3_1:+70394727 | None:intergenic |
| TGCAGACAGATGCTGATAGG+AGG | 0.629052 | 3_1:-70395184 | Msa0372090:intron |
| CCGTGCATATGCGAGCAACA+TGG | 0.631421 | 3_1:-70396712 | Msa0372090:CDS |
| GGGTGTTGCACAGCAGCAAG+AGG | 0.633107 | 3_1:+70394708 | None:intergenic |
| TTTATCCATTGACCAAGAAG+CGG | 0.635327 | 3_1:-70396869 | Msa0372090:CDS |
| TCTCGATGACGAGAGAGCAA+AGG | 0.636235 | 3_1:-70396125 | Msa0372090:CDS |
| CTCCAATCTACACCCAACCT+CGG | 0.638794 | 3_1:-70395629 | Msa0372090:CDS |
| ACTGACAGTGTTATTGGTGA+AGG | 0.639826 | 3_1:-70395570 | Msa0372090:CDS |
| CTTTAGATGACAGTTCCACT+CGG | 0.643445 | 3_1:+70394751 | None:intergenic |
| TAGAATTGGAGACGATGTGA+AGG | 0.652530 | 3_1:-70395081 | Msa0372090:intron |
| GCCTTGGGAGAAACAATGAA+GGG | 0.652631 | 3_1:+70397878 | None:intergenic |
| ATTACAGGGAACTGCAGATG+CGG | 0.654738 | 3_1:-70396512 | Msa0372090:intron |
| TGAGGACACATTGTTAATGG+GGG | 0.655322 | 3_1:-70395321 | Msa0372090:CDS |
| CTTCATTAGACCGAATGCAG+TGG | 0.656858 | 3_1:+70396327 | None:intergenic |
| TTCACTTCATCACAGCTCTG+TGG | 0.657603 | 3_1:-70397953 | Msa0372090:CDS |
| GCATCAAGCATCTTAGATGG+AGG | 0.658896 | 3_1:+70395600 | None:intergenic |
| GAAGCTGCAAGGGAAACTGA+AGG | 0.667346 | 3_1:-70394823 | Msa0372090:CDS |
| TAATGAAGATTGATGAAGAG+GGG | 0.674324 | 3_1:-70396312 | Msa0372090:CDS |
| CAAACAAAGAAATCAATGTG+TGG | 0.677196 | 3_1:+70398152 | None:intergenic |
| AGGGAACTGCAGATGCGGTG+AGG | 0.678286 | 3_1:-70396507 | Msa0372090:CDS |
| TTGCACCAGGAAACTTGTCG+CGG | 0.680161 | 3_1:+70396038 | None:intergenic |
| GATGGATACTGGGAAGACAT+CGG | 0.689450 | 3_1:-70395836 | Msa0372090:CDS |
| GCATATGCGAGCAACATGGG+TGG | 0.694220 | 3_1:-70396708 | Msa0372090:CDS |
| AAGGATGCATTGATTCCGAG+TGG | 0.694244 | 3_1:-70394766 | Msa0372090:CDS |
| GCTGTGATGAAGTGAATGAG+AGG | 0.714707 | 3_1:+70397960 | None:intergenic |
| ATGCTGAATTGAATTGTGTG+AGG | 0.733174 | 3_1:+70396754 | None:intergenic |
| TTAGATGGAGGCAAATACCG+AGG | 0.735785 | 3_1:+70395612 | None:intergenic |
| CGTGCACCAGAAAACCAACG+CGG | 0.814333 | 3_1:+70394644 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTTCTCAAATTATTAT+CGG | + | chr3_1:70395190-70395209 | None:intergenic | 15.0% |
| !! | CAAAAAAAGAACATATTATA+TGG | + | chr3_1:70396274-70396293 | None:intergenic | 15.0% |
| !! | ATATTTAATCAAAGTTTACA+TGG | - | chr3_1:70397588-70397607 | Msa0372090:intron | 15.0% |
| !! | ATGATGTAAATTTAATTATC+CGG | - | chr3_1:70397927-70397946 | Msa0372090:CDS | 15.0% |
| !!! | TTTTGTAGTTTATTATCAAA+AGG | - | chr3_1:70397994-70398013 | Msa0372090:CDS | 15.0% |
| !! | TTTGTAGTTTATTATCAAAA+GGG | - | chr3_1:70397995-70398014 | Msa0372090:CDS | 15.0% |
| !!! | TAATTTGAGTTTGTTGATAA+TGG | - | chr3_1:70394845-70394864 | Msa0372090:CDS | 20.0% |
| !!! | AATTTGAGTTTGTTGATAAT+GGG | - | chr3_1:70394846-70394865 | Msa0372090:CDS | 20.0% |
| !!! | TATGAGTTTTTGACATAAAA+TGG | - | chr3_1:70394927-70394946 | Msa0372090:intron | 20.0% |
| !!! | TTTATTTGAGTTTTTGTATG+TGG | - | chr3_1:70394996-70395015 | Msa0372090:intron | 20.0% |
| !! | TTAGGAACTATATTTGAATT+TGG | - | chr3_1:70395518-70395537 | Msa0372090:intron | 20.0% |
| !! | AACTATATTTGAATTTGGTA+GGG | - | chr3_1:70395523-70395542 | Msa0372090:intron | 20.0% |
| !!! | GTAATGTAATGATTTTATGA+TGG | - | chr3_1:70395558-70395577 | Msa0372090:intron | 20.0% |
| !! | AACAACAGAAAACATATATA+AGG | + | chr3_1:70395899-70395918 | None:intergenic | 20.0% |
| !!! | TGTTATGACTTTTTTGTATT+AGG | - | chr3_1:70396333-70396352 | Msa0372090:CDS | 20.0% |
| !!! | AGGGAAAAATATGAATTTTT+TGG | + | chr3_1:70396979-70396998 | None:intergenic | 20.0% |
| !! | ACAAATTTGTACATATTTCT+TGG | - | chr3_1:70397021-70397040 | Msa0372090:intron | 20.0% |
| !!! | AAGGTTATTTCATAAAAAGT+GGG | - | chr3_1:70397696-70397715 | Msa0372090:intron | 20.0% |
| !!! | TTTCTCAATGTTTTAGCAAT+TGG | - | chr3_1:70394815-70394834 | Msa0372090:CDS | 25.0% |
| !!! | TTCTCAATGTTTTAGCAATT+GGG | - | chr3_1:70394816-70394835 | Msa0372090:CDS | 25.0% |
| !! | TTGATATTGTAGTGTGTTTT+TGG | - | chr3_1:70394874-70394893 | Msa0372090:intron | 25.0% |
| !! | TGATATTGTAGTGTGTTTTT+GGG | - | chr3_1:70394875-70394894 | Msa0372090:intron | 25.0% |
| ! | TTGACATTATCAATCATATG+AGG | + | chr3_1:70395073-70395092 | None:intergenic | 25.0% |
| ! | ACTATCACACTAATTTGAAA+TGG | - | chr3_1:70395115-70395134 | Msa0372090:CDS | 25.0% |
| ! | ATTCACACAATATTATCATG+TGG | - | chr3_1:70395392-70395411 | Msa0372090:intron | 25.0% |
| ! | TTCACACAATATTATCATGT+GGG | - | chr3_1:70395393-70395412 | Msa0372090:intron | 25.0% |
| ! | TAATAGTTCTTGCTTTGTAT+TGG | + | chr3_1:70395454-70395473 | None:intergenic | 25.0% |
| ! | GAACTATATTTGAATTTGGT+AGG | - | chr3_1:70395522-70395541 | Msa0372090:intron | 25.0% |
| ! | ACTATATTTGAATTTGGTAG+GGG | - | chr3_1:70395524-70395543 | Msa0372090:intron | 25.0% |
| ! | TCTTTGATATGTTACTGTTT+AGG | + | chr3_1:70395719-70395738 | None:intergenic | 25.0% |
| !!! | TTAGGTTGATACTACTATTT+TGG | - | chr3_1:70396351-70396370 | Msa0372090:CDS | 25.0% |
| !!! | TAGGTTGATACTACTATTTT+GGG | - | chr3_1:70396352-70396371 | Msa0372090:CDS | 25.0% |
| ! | TTATTTATACGATGGATACT+GGG | - | chr3_1:70396654-70396673 | Msa0372090:CDS | 25.0% |
| ! | ACATTAAGTTACCTAAAATC+TGG | + | chr3_1:70396742-70396761 | None:intergenic | 25.0% |
| !!! | GATTTTAGGTAACTTAATGT+TGG | - | chr3_1:70396742-70396761 | Msa0372090:CDS | 25.0% |
| ! | CAGTAGGATGAATAAATAAA+AGG | + | chr3_1:70396768-70396787 | None:intergenic | 25.0% |
| ! | GTTAAAATAAAACAGACAGT+AGG | + | chr3_1:70396784-70396803 | None:intergenic | 25.0% |
| ! | AACAAACATTAAACATAAGC+TGG | + | chr3_1:70396818-70396837 | None:intergenic | 25.0% |
| ! | AGCTTATGTTTAATGTTTGT+TGG | - | chr3_1:70396817-70396836 | Msa0372090:CDS | 25.0% |
| ! | GCTTATGTTTAATGTTTGTT+GGG | - | chr3_1:70396818-70396837 | Msa0372090:CDS | 25.0% |
| ! | GGAACAAAATATTGAAAACA+AGG | + | chr3_1:70397093-70397112 | None:intergenic | 25.0% |
| ! | TGTCATATTGTGAAGTTAAT+AGG | - | chr3_1:70397234-70397253 | Msa0372090:intron | 25.0% |
| !!! | TTCAATATTGGTTTTCTGAT+TGG | - | chr3_1:70397288-70397307 | Msa0372090:intron | 25.0% |
| ! | CAAGAATTCTCATATCAAAA+GGG | - | chr3_1:70397377-70397396 | Msa0372090:intron | 25.0% |
| !! | GAAGGTTATTTCATAAAAAG+TGG | - | chr3_1:70397695-70397714 | Msa0372090:intron | 25.0% |
| ! | CGTTGAAATAGAAAAGAAAA+AGG | + | chr3_1:70398119-70398138 | None:intergenic | 25.0% |
| CAAACAAAGAAATCAATGTG+TGG | + | chr3_1:70394351-70394370 | None:intergenic | 30.0% | |
| TTTAGATGATGAAGAAGATG+AGG | + | chr3_1:70394506-70394525 | None:intergenic | 30.0% | |
| TAGTGAGAGATAGAGAAAAT+GGG | - | chr3_1:70394754-70394773 | Msa0372090:CDS | 30.0% | |
| GTAAGATGTTATGTGTTTGA+TGG | - | chr3_1:70394963-70394982 | Msa0372090:intron | 30.0% | |
| ! | ATGTTATGTGTTTGATGGAT+TGG | - | chr3_1:70394968-70394987 | Msa0372090:intron | 30.0% |
| !! | TGTTATGTGTTTGATGGATT+GGG | - | chr3_1:70394969-70394988 | Msa0372090:intron | 30.0% |
| !! | TTTGAGTTTTTGTATGTGGT+TGG | - | chr3_1:70395000-70395019 | Msa0372090:intron | 30.0% |
| AGTGCAAATAATGTCATGAT+TGG | + | chr3_1:70395098-70395117 | None:intergenic | 30.0% | |
| TCTCAAATTATTATCGGTGT+CGG | + | chr3_1:70395184-70395203 | None:intergenic | 30.0% | |
| ATATAAGGTTGCTTATTACC+TGG | + | chr3_1:70395884-70395903 | None:intergenic | 30.0% | |
| TTTATTGCTATGATCACTTG+TGG | - | chr3_1:70395923-70395942 | Msa0372090:intron | 30.0% | |
| TTGAATGCTTTCACTATTAC+AGG | - | chr3_1:70395973-70395992 | Msa0372090:intron | 30.0% | |
| TGAATGCTTTCACTATTACA+GGG | - | chr3_1:70395974-70395993 | Msa0372090:intron | 30.0% | |
| !! | TTGGAATATTTAGTTCTTGC+TGG | - | chr3_1:70396049-70396068 | Msa0372090:CDS | 30.0% |
| CATAATCCATTCGATACAAA+TGG | + | chr3_1:70396078-70396097 | None:intergenic | 30.0% | |
| AGAGATTTATACAAGCACAT+AGG | - | chr3_1:70396098-70396117 | Msa0372090:CDS | 30.0% | |
| GAGATTTATACAAGCACATA+GGG | - | chr3_1:70396099-70396118 | Msa0372090:CDS | 30.0% | |
| TCTAATGAAGATTGATGAAG+AGG | - | chr3_1:70396186-70396205 | Msa0372090:intron | 30.0% | |
| CTAATGAAGATTGATGAAGA+GGG | - | chr3_1:70396187-70396206 | Msa0372090:intron | 30.0% | |
| TAATGAAGATTGATGAAGAG+GGG | - | chr3_1:70396188-70396207 | Msa0372090:intron | 30.0% | |
| AATGCCTTATATTGCTAGTA+TGG | - | chr3_1:70396399-70396418 | Msa0372090:CDS | 30.0% | |
| ATGCCTTATATTGCTAGTAT+GGG | - | chr3_1:70396400-70396419 | Msa0372090:CDS | 30.0% | |
| ATACCCATACTAGCAATATA+AGG | + | chr3_1:70396406-70396425 | None:intergenic | 30.0% | |
| CTTTGTATTGAACAGATAGA+AGG | + | chr3_1:70396547-70396566 | None:intergenic | 30.0% | |
| CTTATTTATACGATGGATAC+TGG | - | chr3_1:70396653-70396672 | Msa0372090:CDS | 30.0% | |
| GCTTTCTATAATGCAAATCT+GGG | - | chr3_1:70396697-70396716 | Msa0372090:CDS | 30.0% | |
| ! | TTTAATGTTTGTTGGGACAT+TGG | - | chr3_1:70396825-70396844 | Msa0372090:CDS | 30.0% |
| AAAATTCATCATTCTGTCGT+TGG | - | chr3_1:70397123-70397142 | Msa0372090:intron | 30.0% | |
| TATTGAGGACACATTGTTAA+TGG | - | chr3_1:70397176-70397195 | Msa0372090:intron | 30.0% | |
| ATTGAGGACACATTGTTAAT+GGG | - | chr3_1:70397177-70397196 | Msa0372090:intron | 30.0% | |
| !! | GGAAGTACTAACTTCAATAT+TGG | - | chr3_1:70397276-70397295 | Msa0372090:intron | 30.0% |
| GCAAGAATTCTCATATCAAA+AGG | - | chr3_1:70397376-70397395 | Msa0372090:intron | 30.0% | |
| ATTGACAAGAATGCTAGAAT+TGG | - | chr3_1:70397405-70397424 | Msa0372090:intron | 30.0% | |
| TATAGAGTAGAAGACTCTTT+CGG | - | chr3_1:70397899-70397918 | Msa0372090:CDS | 30.0% | |
| !! | CAAAGAAGCTTTTATTTGAC+CGG | + | chr3_1:70397949-70397968 | None:intergenic | 30.0% |
| GTAGTTTATTATCAAAAGGG+TGG | - | chr3_1:70397998-70398017 | Msa0372090:CDS | 30.0% | |
| !! | TAATGTGATTTGCTTCTTCT+AGG | - | chr3_1:70398083-70398102 | Msa0372090:five_prime_UTR | 30.0% |
| GCAAGAAGAAGAGAAAACTA+TGG | - | chr3_1:70394592-70394611 | Msa0372090:three_prime_UTR | 35.0% | |
| ! | AAGACAAGTCTGTGAGTTTT+TGG | + | chr3_1:70394659-70394678 | None:intergenic | 35.0% |
| GTAGTGAGAGATAGAGAAAA+TGG | - | chr3_1:70394753-70394772 | Msa0372090:CDS | 35.0% | |
| AGTGAGAGATAGAGAAAATG+GGG | - | chr3_1:70394755-70394774 | Msa0372090:CDS | 35.0% | |
| !!! | GTGTGTTTTTGGGATTCTTA+AGG | - | chr3_1:70394885-70394904 | Msa0372090:intron | 35.0% |
| ATTCTTAAGGTAGATCAGAC+TGG | - | chr3_1:70394898-70394917 | Msa0372090:intron | 35.0% | |
| TGGTCAAAATCTATGAAGCA+CGG | - | chr3_1:70395135-70395154 | Msa0372090:CDS | 35.0% | |
| CATATATGTCAATGTCGTGA+AGG | - | chr3_1:70395226-70395245 | Msa0372090:intron | 35.0% | |
| !! | TGCATTTTGAGTATGAAGCA+AGG | + | chr3_1:70395305-70395324 | None:intergenic | 35.0% |
| ACTCAATTGCACAAACAATG+AGG | + | chr3_1:70395341-70395360 | None:intergenic | 35.0% | |
| !!! | AACCCTGCATTTTTTGTGTT+AGG | - | chr3_1:70395487-70395506 | Msa0372090:intron | 35.0% |
| TGCCTAACACAAAAAATGCA+GGG | + | chr3_1:70395492-70395511 | None:intergenic | 35.0% | |
| ATGCCTAACACAAAAAATGC+AGG | + | chr3_1:70395493-70395512 | None:intergenic | 35.0% | |
| TTGTGTTAGGCATGTTTGTT+AGG | - | chr3_1:70395500-70395519 | Msa0372090:intron | 35.0% | |
| AGTGTGCTTGGTATTATACT+TGG | - | chr3_1:70395588-70395607 | Msa0372090:CDS | 35.0% | |
| TGCTTGGTATTATACTTGGA+GGG | - | chr3_1:70395592-70395611 | Msa0372090:CDS | 35.0% | |
| TTTATCCATTGACCAAGAAG+CGG | - | chr3_1:70395631-70395650 | Msa0372090:CDS | 35.0% | |
| ATGCTGAATTGAATTGTGTG+AGG | + | chr3_1:70395749-70395768 | None:intergenic | 35.0% | |
| ATGGGTGGTTACAAAAATGA+AGG | - | chr3_1:70395807-70395826 | Msa0372090:CDS | 35.0% | |
| CAAAAATGAAGGTTTCGTTG+AGG | - | chr3_1:70395818-70395837 | Msa0372090:CDS | 35.0% | |
| ! | GCAATATTTATGGCTTTTCG+AGG | - | chr3_1:70396015-70396034 | Msa0372090:CDS | 35.0% |
| AGTTGAAAGCTATGAAAGTG+AGG | - | chr3_1:70396248-70396267 | Msa0372090:intron | 35.0% | |
| GTGCAAGCTTATTTATACGA+TGG | - | chr3_1:70396646-70396665 | Msa0372090:CDS | 35.0% | |
| GGCTTTCTATAATGCAAATC+TGG | - | chr3_1:70396696-70396715 | Msa0372090:CDS | 35.0% | |
| !!! | AAAATCTGGTACTGGCTTTT+TGG | + | chr3_1:70396728-70396747 | None:intergenic | 35.0% |
| ! | AAAAGCCAGTACCAGATTTT+AGG | - | chr3_1:70396728-70396747 | Msa0372090:CDS | 35.0% |
| AGTTACCTAAAATCTGGTAC+TGG | + | chr3_1:70396736-70396755 | None:intergenic | 35.0% | |
| ACATAAGCTGGCTGTTATTA+TGG | + | chr3_1:70396806-70396825 | None:intergenic | 35.0% | |
| GATATCACTGACAGTGTTAT+TGG | - | chr3_1:70396924-70396943 | Msa0372090:intron | 35.0% | |
| TGGTGAAGGATGTGTAATTA+AGG | - | chr3_1:70396944-70396963 | Msa0372090:intron | 35.0% | |
| ATACTAGTAACGATGGAGTA+GGG | + | chr3_1:70396998-70397017 | None:intergenic | 35.0% | |
| ! | TGATGAATTTTGCAGTTCTG+TGG | + | chr3_1:70397114-70397133 | None:intergenic | 35.0% |
| ! | ATCAGAAGGTGCAATTATTG+AGG | - | chr3_1:70397161-70397180 | Msa0372090:intron | 35.0% |
| TTGAGGACACATTGTTAATG+GGG | - | chr3_1:70397178-70397197 | Msa0372090:intron | 35.0% | |
| !! | GGAATTGACTTTAGTTTGAC+TGG | - | chr3_1:70397255-70397274 | Msa0372090:intron | 35.0% |
| GAATTCTTGCCAATACCAAT+CGG | + | chr3_1:70397366-70397385 | None:intergenic | 35.0% | |
| GAGGAAATAGTATACTAGAG+AGG | + | chr3_1:70397776-70397795 | None:intergenic | 35.0% | |
| ! | TTTCTGGTGCACGTTATATT+TGG | - | chr3_1:70397866-70397885 | Msa0372090:CDS | 35.0% |
| ACCTCGAAAAGCCATCTATA+TGG | - | chr3_1:70394435-70394454 | Msa0372090:three_prime_UTR | 40.0% | |
| AGCCATCTATATGGCTTCAA+TGG | - | chr3_1:70394444-70394463 | Msa0372090:three_prime_UTR | 40.0% | |
| AGCCATTGAAGCCATATAGA+TGG | + | chr3_1:70394449-70394468 | None:intergenic | 40.0% | |
| GAAGATGAGGAAGAAGAAGA+AGG | + | chr3_1:70394493-70394512 | None:intergenic | 40.0% | |
| TCTTCTTCTTGCTGAAACTG+TGG | + | chr3_1:70394584-70394603 | None:intergenic | 40.0% | |
| TTGGAATCAGAAACAGCCTT+GGG | + | chr3_1:70394640-70394659 | None:intergenic | 40.0% | |
| ! | TTTGGAATCAGAAACAGCCT+TGG | + | chr3_1:70394641-70394660 | None:intergenic | 40.0% |
| TATGAAGCAAGGACATTCCT+TGG | + | chr3_1:70395294-70395313 | None:intergenic | 40.0% | |
| ! | CAATATTATCATGTGGGCTG+TGG | - | chr3_1:70395399-70395418 | Msa0372090:intron | 40.0% |
| GTGCTTGGTATTATACTTGG+AGG | - | chr3_1:70395591-70395610 | Msa0372090:CDS | 40.0% | |
| GCTTGGTATTATACTTGGAG+GGG | - | chr3_1:70395593-70395612 | Msa0372090:CDS | 40.0% | |
| CTTGGTATTATACTTGGAGG+GGG | - | chr3_1:70395594-70395613 | Msa0372090:CDS | 40.0% | |
| TTATCCATTGACCAAGAAGC+GGG | - | chr3_1:70395632-70395651 | Msa0372090:CDS | 40.0% | |
| TTCCTCTTGGAGCAAACTAT+AGG | - | chr3_1:70395667-70395686 | Msa0372090:intron | 40.0% | |
| TGTTTAGGCAGTTGCTAACA+GGG | + | chr3_1:70395704-70395723 | None:intergenic | 40.0% | |
| TCAATTCAGCATCCTTGAAC+AGG | - | chr3_1:70395757-70395776 | Msa0372090:intron | 40.0% | |
| CTTATTACCTGGAACCAGTT+TGG | + | chr3_1:70395873-70395892 | None:intergenic | 40.0% | |
| ATGCGGTGAGGCAATATTTA+TGG | - | chr3_1:70396005-70396024 | Msa0372090:CDS | 40.0% | |
| !! | TTTCGAGGAGCACAATGTTT+TGG | - | chr3_1:70396030-70396049 | Msa0372090:CDS | 40.0% |
| TGGTGACCATTTGTATCGAA+TGG | - | chr3_1:70396069-70396088 | Msa0372090:CDS | 40.0% | |
| ! | GCTTTCAACTGTTCTCCTTT+TGG | + | chr3_1:70396238-70396257 | None:intergenic | 40.0% |
| TCTTACTCTCATCCCAAGTT+CGG | + | chr3_1:70396521-70396540 | None:intergenic | 40.0% | |
| ACGTATTTGCGAATCTGCTT+AGG | - | chr3_1:70396624-70396643 | Msa0372090:intron | 40.0% | |
| TCAGCATCAAGCATCTTAGA+TGG | + | chr3_1:70396906-70396925 | None:intergenic | 40.0% | |
| ! | ACTGACAGTGTTATTGGTGA+AGG | - | chr3_1:70396930-70396949 | Msa0372090:intron | 40.0% |
| CATACTAGTAACGATGGAGT+AGG | + | chr3_1:70396999-70397018 | None:intergenic | 40.0% | |
| CTACTCCATCGTTACTAGTA+TGG | - | chr3_1:70396997-70397016 | Msa0372090:intron | 40.0% | |
| TTGTGCCATACTAGTAACGA+TGG | + | chr3_1:70397005-70397024 | None:intergenic | 40.0% | |
| TGAGGACACATTGTTAATGG+GGG | - | chr3_1:70397179-70397198 | Msa0372090:intron | 40.0% | |
| AATGGGGGCAGATTATTATG+AGG | - | chr3_1:70397194-70397213 | Msa0372090:intron | 40.0% | |
| ! | AGATGCTGATAGGAGGTTTT+TGG | - | chr3_1:70397323-70397342 | Msa0372090:intron | 40.0% |
| TAGAATTGGAGACGATGTGA+AGG | - | chr3_1:70397419-70397438 | Msa0372090:intron | 40.0% | |
| AGAGAACAATGCACTTAGAC+AGG | + | chr3_1:70397494-70397513 | None:intergenic | 40.0% | |
| CATGAATGTGGAGCAAGATA+TGG | + | chr3_1:70397524-70397543 | None:intergenic | 40.0% | |
| TGGGATTGTCACAGTAATCA+AGG | - | chr3_1:70397715-70397734 | Msa0372090:intron | 40.0% | |
| CTTTAGATGACAGTTCCACT+CGG | + | chr3_1:70397752-70397771 | None:intergenic | 40.0% | |
| ! | GCCATATAGATGGCTTTTCG+AGG | + | chr3_1:70394439-70394458 | None:intergenic | 45.0% |
| ATGGCTTCAATGGCTTCGAT+CGG | - | chr3_1:70394454-70394473 | Msa0372090:three_prime_UTR | 45.0% | |
| GAATGAGAGGTTACGTGCAA+TGG | + | chr3_1:70394530-70394549 | None:intergenic | 45.0% | |
| GCTGTGATGAAGTGAATGAG+AGG | + | chr3_1:70394543-70394562 | None:intergenic | 45.0% | |
| TTCACTTCATCACAGCTCTG+TGG | - | chr3_1:70394547-70394566 | Msa0372090:three_prime_UTR | 45.0% | |
| GCCTTGGGAGAAACAATGAA+GGG | + | chr3_1:70394625-70394644 | None:intergenic | 45.0% | |
| AGCCTTGGGAGAAACAATGA+AGG | + | chr3_1:70394626-70394645 | None:intergenic | 45.0% | |
| CAACTAACTCTGCTAGCATC+TGG | + | chr3_1:70394685-70394704 | None:intergenic | 45.0% | |
| ! | TGTCAATGTCGTGAAGGTGT+CGG | - | chr3_1:70395232-70395251 | Msa0372090:intron | 45.0% |
| GCAAGGACATTCCTTGGATT+AGG | + | chr3_1:70395288-70395307 | None:intergenic | 45.0% | |
| ! | GATGGTTTTCAGAGTGTGCT+TGG | - | chr3_1:70395576-70395595 | Msa0372090:CDS | 45.0% |
| !! | AGCCTATAGTTTGCTCCAAG+AGG | + | chr3_1:70395672-70395691 | None:intergenic | 45.0% |
| CTGTTTAGGCAGTTGCTAAC+AGG | + | chr3_1:70395705-70395724 | None:intergenic | 45.0% | |
| AGAGTCCTGAGAATCCAAAC+TGG | - | chr3_1:70395856-70395875 | Msa0372090:CDS | 45.0% | |
| TGGAACCAGTTTGGATTCTC+AGG | + | chr3_1:70395864-70395883 | None:intergenic | 45.0% | |
| ! | TGAGAATCCAAACTGGTTCC+AGG | - | chr3_1:70395863-70395882 | Msa0372090:intron | 45.0% |
| ATTACAGGGAACTGCAGATG+CGG | - | chr3_1:70395988-70396007 | Msa0372090:CDS | 45.0% | |
| ATCCATTGGCAATGCAGCAA+CGG | + | chr3_1:70396143-70396162 | None:intergenic | 45.0% | |
| CTTCATTAGACCGAATGCAG+TGG | + | chr3_1:70396176-70396195 | None:intergenic | 45.0% | |
| GAATTTGCCGAGAAGCCAAA+AGG | - | chr3_1:70396220-70396239 | Msa0372090:intron | 45.0% | |
| !!! | CTGTTCTCCTTTTGGCTTCT+CGG | + | chr3_1:70396230-70396249 | None:intergenic | 45.0% |
| TTTCCTGGTGCAAACGACTT+CGG | - | chr3_1:70396472-70396491 | Msa0372090:CDS | 45.0% | |
| TTCGGGAGTGAAGTTATTCC+TGG | - | chr3_1:70396490-70396509 | Msa0372090:CDS | 45.0% | |
| GATGGATACTGGGAAGACAT+CGG | - | chr3_1:70396664-70396683 | Msa0372090:CDS | 45.0% | |
| GGAAGACATCGGTACAATTG+AGG | - | chr3_1:70396675-70396694 | Msa0372090:CDS | 45.0% | |
| TTAGATGGAGGCAAATACCG+AGG | + | chr3_1:70396891-70396910 | None:intergenic | 45.0% | |
| GCATCAAGCATCTTAGATGG+AGG | + | chr3_1:70396903-70396922 | None:intergenic | 45.0% | |
| CTGCGATCTTGCATATCAGA+AGG | - | chr3_1:70397147-70397166 | Msa0372090:intron | 45.0% | |
| !!! | AGGAGGTTTTTGGCTGCTAA+AGG | - | chr3_1:70397333-70397352 | Msa0372090:intron | 45.0% |
| ATCTTGCTCCACATTCATGC+TGG | - | chr3_1:70397525-70397544 | Msa0372090:intron | 45.0% | |
| TCACTCTTCCAGCATGAATG+TGG | + | chr3_1:70397536-70397555 | None:intergenic | 45.0% | |
| ACATTCATGCTGGAAGAGTG+AGG | - | chr3_1:70397535-70397554 | Msa0372090:intron | 45.0% | |
| CATTCATGCTGGAAGAGTGA+GGG | - | chr3_1:70397536-70397555 | Msa0372090:intron | 45.0% | |
| ACAATGTGCAAGAAGCTGCA+AGG | - | chr3_1:70397666-70397685 | Msa0372090:intron | 45.0% | |
| CAATGTGCAAGAAGCTGCAA+GGG | - | chr3_1:70397667-70397686 | Msa0372090:intron | 45.0% | |
| !! | AAGGATGCATTGATTCCGAG+TGG | - | chr3_1:70397734-70397753 | Msa0372090:intron | 45.0% |
| ACCTTCCAGCAGTGAAAATG+GGG | + | chr3_1:70397815-70397834 | None:intergenic | 45.0% | |
| CACCTTCCAGCAGTGAAAAT+GGG | + | chr3_1:70397816-70397835 | None:intergenic | 45.0% | |
| ACACCTTCCAGCAGTGAAAA+TGG | + | chr3_1:70397817-70397836 | None:intergenic | 45.0% | |
| GGTGCACGTTATATTTGGCT+CGG | - | chr3_1:70397871-70397890 | Msa0372090:CDS | 45.0% | |
| ! | GCCCTTCATTGTTTCTCCCA+AGG | - | chr3_1:70394621-70394640 | Msa0372090:three_prime_UTR | 50.0% |
| GATTAGGTGTGTCCCTGTGT+CGG | + | chr3_1:70395272-70395291 | None:intergenic | 50.0% | |
| ACAGGGACACACCTAATCCA+AGG | - | chr3_1:70395274-70395293 | Msa0372090:intron | 50.0% | |
| ! | ATTATACTTGGAGGGGGTGC+CGG | - | chr3_1:70395600-70395619 | Msa0372090:CDS | 50.0% |
| CAATGGATAAAGACGCGTCC+CGG | + | chr3_1:70395622-70395641 | None:intergenic | 50.0% | |
| TTTGCCCGCTTCTTGGTCAA+TGG | + | chr3_1:70395639-70395658 | None:intergenic | 50.0% | |
| GCAAAACCAGCTGTTCCTCT+TGG | - | chr3_1:70395654-70395673 | Msa0372090:intron | 50.0% | |
| TTTGCTCCAAGAGGAACAGC+TGG | + | chr3_1:70395663-70395682 | None:intergenic | 50.0% | |
| CATGTTGCTCGCATATGCAC+GGG | + | chr3_1:70395790-70395809 | None:intergenic | 50.0% | |
| CCATGTTGCTCGCATATGCA+CGG | + | chr3_1:70395791-70395810 | None:intergenic | 50.0% | |
| CGTGCATATGCGAGCAACAT+GGG | - | chr3_1:70395789-70395808 | Msa0372090:CDS | 50.0% | |
| TCTCGATGACGAGAGAGCAA+AGG | - | chr3_1:70396375-70396394 | Msa0372090:CDS | 50.0% | |
| TTGCACCAGGAAACTTGTCG+CGG | + | chr3_1:70396465-70396484 | None:intergenic | 50.0% | |
| TTCCTGGTGCAAACGACTTC+GGG | - | chr3_1:70396473-70396492 | Msa0372090:CDS | 50.0% | |
| ATTCCTGGTGCAACCGAACT+TGG | - | chr3_1:70396505-70396524 | Msa0372090:CDS | 50.0% | |
| TTCCTGGTGCAACCGAACTT+GGG | - | chr3_1:70396506-70396525 | Msa0372090:CDS | 50.0% | |
| CTCCAATCTACACCCAACCT+CGG | - | chr3_1:70396871-70396890 | Msa0372090:CDS | 50.0% | |
| TACCGAGGTTGGGTGTAGAT+TGG | + | chr3_1:70396876-70396895 | None:intergenic | 50.0% | |
| TGGAGGCAAATACCGAGGTT+GGG | + | chr3_1:70396886-70396905 | None:intergenic | 50.0% | |
| ATGGAGGCAAATACCGAGGT+TGG | + | chr3_1:70396887-70396906 | None:intergenic | 50.0% | |
| TGCTGCAGACAGATGCTGAT+AGG | - | chr3_1:70397313-70397332 | Msa0372090:intron | 50.0% | |
| TGCAGACAGATGCTGATAGG+AGG | - | chr3_1:70397316-70397335 | Msa0372090:intron | 50.0% | |
| GCTAAAGGCAGTGTTCCGAT+TGG | - | chr3_1:70397348-70397367 | Msa0372090:intron | 50.0% | |
| GGCAGTGTTCCGATTGGTAT+TGG | - | chr3_1:70397354-70397373 | Msa0372090:intron | 50.0% | |
| TGCTGGAAGAGTGAGGGAAA+TGG | - | chr3_1:70397542-70397561 | Msa0372090:intron | 50.0% | |
| GCTGGAAGAGTGAGGGAAAT+GGG | - | chr3_1:70397543-70397562 | Msa0372090:intron | 50.0% | |
| CTGGAAGAGTGAGGGAAATG+GGG | - | chr3_1:70397544-70397563 | Msa0372090:intron | 50.0% | |
| TGGAAGAGTGAGGGAAATGG+GGG | - | chr3_1:70397545-70397564 | Msa0372090:intron | 50.0% | |
| GAAGCTGCAAGGGAAACTGA+AGG | - | chr3_1:70397677-70397696 | Msa0372090:intron | 50.0% | |
| ! | CAACACCCCATTTTCACTGC+TGG | - | chr3_1:70397807-70397826 | Msa0372090:intron | 50.0% |
| ! | ACCCCATTTTCACTGCTGGA+AGG | - | chr3_1:70397811-70397830 | Msa0372090:intron | 50.0% |
| ! | GTGGGCTGTGGCTGTTAGAT+TGG | - | chr3_1:70395411-70395430 | Msa0372090:intron | 55.0% |
| !! | TTATACTTGGAGGGGGTGCC+GGG | - | chr3_1:70395601-70395620 | Msa0372090:CDS | 55.0% |
| !!! | AGCTGGTTTTGCCCGCTTCT+TGG | + | chr3_1:70395646-70395665 | None:intergenic | 55.0% |
| ACGGGACAAGTGCCTGTTCA+AGG | + | chr3_1:70395772-70395791 | None:intergenic | 55.0% | |
| CCGTGCATATGCGAGCAACA+TGG | - | chr3_1:70395788-70395807 | Msa0372090:CDS | 55.0% | |
| GCATATGCGAGCAACATGGG+TGG | - | chr3_1:70395792-70395811 | Msa0372090:CDS | 55.0% | |
| CACCGTTGCTGCATTGCCAA+TGG | - | chr3_1:70396138-70396157 | Msa0372090:CDS | 55.0% | |
| GTGGCACGTGCTTCATCCAT+TGG | + | chr3_1:70396157-70396176 | None:intergenic | 55.0% | |
| ! | GAAGCACGTGCCACTGCATT+CGG | - | chr3_1:70396163-70396182 | Msa0372090:intron | 55.0% |
| ATCCCAAGTTCGGTTGCACC+AGG | + | chr3_1:70396511-70396530 | None:intergenic | 55.0% | |
| GAACAACTCTGCTTCCGCGT+TGG | - | chr3_1:70397842-70397861 | Msa0372090:CDS | 55.0% | |
| !!! | CTGCTTCCGCGTTGGTTTTC+TGG | - | chr3_1:70397850-70397869 | Msa0372090:CDS | 55.0% |
| CGTGCACCAGAAAACCAACG+CGG | + | chr3_1:70397859-70397878 | None:intergenic | 55.0% | |
| ACTGACGCGTGTCCGACACA+GGG | - | chr3_1:70395257-70395276 | Msa0372090:intron | 60.0% | |
| AGGGAACTGCAGATGCGGTG+AGG | - | chr3_1:70395993-70396012 | Msa0372090:CDS | 60.0% | |
| CTGCTCCGCGACAAGTTTCC+TGG | - | chr3_1:70396457-70396476 | Msa0372090:CDS | 60.0% | |
| CTCCCGAAGTCGTTTGCACC+AGG | + | chr3_1:70396478-70396497 | None:intergenic | 60.0% | |
| ! | GGGTGTTGCACAGCAGCAAG+AGG | + | chr3_1:70397795-70397814 | None:intergenic | 60.0% |
| CACTGACGCGTGTCCGACAC+AGG | - | chr3_1:70395256-70395275 | Msa0372090:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 70394341 | 70398181 | 70394341 | ID=Msa0372090;Name=Msa0372090 |
| chr3_1 | mRNA | 70394341 | 70398181 | 70394341 | ID=Msa0372090-mRNA-1;Parent=Msa0372090;Name=Msa0372090-mRNA-1;_AED=0.08;_eAED=0.08;_QI=113|0.87|0.88|1|1|1|9|412|510 |
| chr3_1 | exon | 70394341 | 70394869 | 70394341 | ID=Msa0372090-mRNA-1:exon:15337;Parent=Msa0372090-mRNA-1 |
| chr3_1 | exon | 70395082 | 70395201 | 70395082 | ID=Msa0372090-mRNA-1:exon:15336;Parent=Msa0372090-mRNA-1 |
| chr3_1 | exon | 70395307 | 70395405 | 70395307 | ID=Msa0372090-mRNA-1:exon:15335;Parent=Msa0372090-mRNA-1 |
| chr3_1 | exon | 70395566 | 70395668 | 70395566 | ID=Msa0372090-mRNA-1:exon:15334;Parent=Msa0372090-mRNA-1 |
| chr3_1 | exon | 70395773 | 70395876 | 70395773 | ID=Msa0372090-mRNA-1:exon:15333;Parent=Msa0372090-mRNA-1 |
| chr3_1 | exon | 70395988 | 70396167 | 70395988 | ID=Msa0372090-mRNA-1:exon:15332;Parent=Msa0372090-mRNA-1 |
| chr3_1 | exon | 70396258 | 70396527 | 70396258 | ID=Msa0372090-mRNA-1:exon:15331;Parent=Msa0372090-mRNA-1 |
| chr3_1 | exon | 70396638 | 70396934 | 70396638 | ID=Msa0372090-mRNA-1:exon:15330;Parent=Msa0372090-mRNA-1 |
| chr3_1 | exon | 70397826 | 70398181 | 70397826 | ID=Msa0372090-mRNA-1:exon:15329;Parent=Msa0372090-mRNA-1 |
| chr3_1 | five_prime_UTR | 70398069 | 70398181 | 70398069 | ID=Msa0372090-mRNA-1:five_prime_utr;Parent=Msa0372090-mRNA-1 |
| chr3_1 | CDS | 70397826 | 70398068 | 70397826 | ID=Msa0372090-mRNA-1:cds;Parent=Msa0372090-mRNA-1 |
| chr3_1 | CDS | 70396638 | 70396934 | 70396638 | ID=Msa0372090-mRNA-1:cds;Parent=Msa0372090-mRNA-1 |
| chr3_1 | CDS | 70396258 | 70396527 | 70396258 | ID=Msa0372090-mRNA-1:cds;Parent=Msa0372090-mRNA-1 |
| chr3_1 | CDS | 70395988 | 70396167 | 70395988 | ID=Msa0372090-mRNA-1:cds;Parent=Msa0372090-mRNA-1 |
| chr3_1 | CDS | 70395773 | 70395876 | 70395773 | ID=Msa0372090-mRNA-1:cds;Parent=Msa0372090-mRNA-1 |
| chr3_1 | CDS | 70395566 | 70395668 | 70395566 | ID=Msa0372090-mRNA-1:cds;Parent=Msa0372090-mRNA-1 |
| chr3_1 | CDS | 70395307 | 70395405 | 70395307 | ID=Msa0372090-mRNA-1:cds;Parent=Msa0372090-mRNA-1 |
| chr3_1 | CDS | 70395082 | 70395201 | 70395082 | ID=Msa0372090-mRNA-1:cds;Parent=Msa0372090-mRNA-1 |
| chr3_1 | CDS | 70394753 | 70394869 | 70394753 | ID=Msa0372090-mRNA-1:cds;Parent=Msa0372090-mRNA-1 |
| chr3_1 | three_prime_UTR | 70394341 | 70394752 | 70394341 | ID=Msa0372090-mRNA-1:three_prime_utr;Parent=Msa0372090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
