AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0901860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0901860 MtrunA17_Chr6g0482941 94.747 514 12 1 1 499 1 514 0.0 1008
Msa0901860 MtrunA17_Chr6g0482951 91.829 514 27 1 1 499 1 514 0.0 984
Msa0901860 MtrunA17_Chr4g0043091 50.699 501 225 6 20 499 6 505 1.30e-178 511
Msa0901860 MtrunA17_Chr4g0033271 48.911 505 235 8 15 497 8 511 1.53e-167 483
Msa0901860 MtrunA17_Chr6g0482081 50.397 504 225 8 20 498 11 514 2.47e-167 483
Msa0901860 MtrunA17_Chr4g0042171 50.737 475 212 5 43 495 24 498 6.06e-167 481
Msa0901860 MtrunA17_Chr3g0090131 51.059 472 202 7 43 495 21 482 3.13e-166 479
Msa0901860 MtrunA17_Chr6g0482131 50.209 478 216 6 43 498 36 513 4.50e-166 479
Msa0901860 MtrunA17_Chr4g0033201 48.527 509 239 8 12 497 4 512 1.40e-165 478
Msa0901860 MtrunA17_Chr3g0087261 48.611 504 239 5 15 499 9 511 9.96e-165 476
Msa0901860 MtrunA17_Chr3g0090111 50.743 471 204 7 43 495 19 479 3.84e-164 473
Msa0901860 MtrunA17_Chr6g0482071 47.173 513 245 7 13 499 3 515 4.70e-164 474
Msa0901860 MtrunA17_Chr4g0033401 48.031 508 239 8 13 496 3 509 1.65e-162 470
Msa0901860 MtrunA17_Chr4g0033331 49.287 491 225 7 29 496 25 514 5.96e-162 469
Msa0901860 MtrunA17_Chr4g0033311 47.451 510 242 7 15 498 7 516 9.44e-162 469
Msa0901860 MtrunA17_Chr3g0087271 48.915 507 238 7 13 499 7 512 1.03e-161 468
Msa0901860 MtrunA17_Chr2g0329191 48.857 481 225 6 38 497 29 509 1.54e-161 468
Msa0901860 MtrunA17_Chr4g0033321 47.451 510 242 9 13 498 3 510 1.66e-160 465
Msa0901860 MtrunA17_Chr2g0329201 46.943 507 245 7 15 497 1 507 2.72e-159 462
Msa0901860 MtrunA17_Chr3g0088441 46.004 513 251 7 12 498 3 515 3.26e-156 455
Msa0901860 MtrunA17_Chr4g0033191 47.976 494 232 9 28 497 27 519 1.11e-155 453
Msa0901860 MtrunA17_Chr4g0074561 46.947 475 229 6 48 499 40 514 3.12e-155 452
Msa0901860 MtrunA17_Chr4g0033341 46.875 512 243 10 11 497 36 543 1.29e-152 446
Msa0901860 MtrunA17_Chr2g0317841 45.946 481 241 4 34 495 23 503 5.38e-152 444
Msa0901860 MtrunA17_Chr2g0317821 46.154 481 240 4 34 495 23 503 1.53e-151 443
Msa0901860 MtrunA17_Chr2g0288071 46.004 513 242 9 12 499 42 544 2.42e-151 443
Msa0901860 MtrunA17_Chr4g0074551 46.300 473 232 5 48 499 55 526 6.80e-150 440
Msa0901860 MtrunA17_Chr2g0288021 45.283 477 241 5 43 499 35 511 7.79e-150 438
Msa0901860 MtrunA17_Chr4g0010501 47.569 473 228 6 43 497 24 494 2.04e-148 434
Msa0901860 MtrunA17_Chr2g0329321 45.020 502 230 7 18 497 11 488 5.25e-148 432
Msa0901860 MtrunA17_Chr4g0033261 44.141 512 235 8 13 498 8 494 2.54e-146 428
Msa0901860 MtrunA17_Chr5g0430451 44.380 516 231 8 14 497 7 498 2.31e-139 410
Msa0901860 MtrunA17_Chr4g0006971 43.949 471 246 5 42 498 26 492 1.63e-138 409
Msa0901860 MtrunA17_Chr1g0195611 43.590 507 255 8 7 499 2 491 1.57e-137 406
Msa0901860 MtrunA17_Chr7g0242681 45.551 472 236 7 42 498 37 502 3.11e-137 406
Msa0901860 MtrunA17_Chr4g0033231 42.116 501 241 8 20 497 19 493 2.55e-136 402
Msa0901860 MtrunA17_Chr5g0428831 42.942 503 257 8 7 495 2 488 4.27e-135 400
Msa0901860 MtrunA17_Chr4g0006111 42.323 508 237 9 23 499 45 527 8.40e-133 395
Msa0901860 MtrunA17_Chr7g0242691 43.644 472 246 7 42 498 30 496 1.24e-132 394
Msa0901860 MtrunA17_Chr4g0006131 41.046 497 234 8 35 499 34 503 5.31e-124 372
Msa0901860 MtrunA17_Chr5g0418871 58.362 293 121 1 64 355 4 296 6.34e-123 363
Msa0901860 MtrunA17_Chr1g0195641 45.692 383 194 4 40 410 24 404 1.80e-112 338
Msa0901860 MtrunA17_Chr7g0234091 40.381 473 248 10 44 497 76 533 2.04e-110 338
Msa0901860 MtrunA17_Chr7g0234131 38.819 474 253 10 44 496 76 533 2.25e-105 325
Msa0901860 MtrunA17_Chr7g0234111 39.706 476 245 11 44 496 76 532 2.57e-105 325
Msa0901860 MtrunA17_Chr2g0301231 40.670 418 192 8 110 497 1 392 2.40e-95 294
Msa0901860 MtrunA17_Chr3g0087201 47.866 328 153 5 184 495 17 342 3.48e-92 284
Msa0901860 MtrunA17_Chr7g0230651 40.166 361 192 5 97 443 26 376 1.64e-88 276
Msa0901860 MtrunA17_Chr7g0227561 38.433 268 128 6 45 308 48 282 1.40e-56 190
Msa0901860 MtrunA17_Chr7g0236731 42.918 233 126 4 133 363 32 259 2.17e-53 181
Msa0901860 MtrunA17_Chr3g0087191 53.741 147 65 2 40 183 19 165 2.86e-47 161
Msa0901860 MtrunA17_Chr8g0352881 46.739 92 49 0 265 356 57 148 2.11e-21 90.9
Msa0901860 MtrunA17_Chr5g0418861 46.154 91 45 3 410 496 1 91 2.38e-20 85.9
Msa0901860 MtrunA17_Chr4g0068871 25.000 412 245 13 102 499 175 536 2.12e-19 91.7
Msa0901860 MtrunA17_Chr2g0288031 54.237 59 27 0 193 251 5 63 4.65e-18 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0901860 AT3G18080.1 78.333 480 88 2 34 497 30 509 0.0 786
Msa0901860 AT3G18070.3 72.199 482 110 3 34 499 21 494 0.0 732
Msa0901860 AT3G18070.1 70.994 493 123 4 25 499 10 500 0.0 730
Msa0901860 AT3G18070.4 74.854 342 83 2 34 374 21 360 0.0 545
Msa0901860 AT3G18070.2 72.121 330 76 2 186 499 94 423 3.84e-177 504
Msa0901860 AT3G18070.2 60.976 82 30 1 25 104 10 91 1.33e-24 106
Msa0901860 AT3G18070.7 73.312 311 67 2 205 499 1 311 4.21e-170 482
Msa0901860 AT1G26560.1 50.105 475 215 6 43 495 32 506 5.33e-167 482
Msa0901860 AT5G54570.1 51.452 482 211 6 37 495 24 505 2.24e-166 481
Msa0901860 AT5G44640.1 47.732 507 239 8 13 499 5 505 1.48e-155 452
Msa0901860 AT2G44450.1 50.208 480 216 7 40 499 28 504 2.28e-154 449
Msa0901860 AT1G02850.2 48.180 467 219 7 44 495 27 485 1.15e-152 445
Msa0901860 AT1G61820.1 47.992 473 222 7 48 497 35 506 5.14e-151 441
Msa0901860 AT5G42260.1 47.610 502 237 9 10 491 2 497 9.63e-151 440
Msa0901860 AT2G44480.1 45.979 485 240 6 33 496 26 509 2.48e-149 437
Msa0901860 AT2G25630.1 47.571 494 238 9 16 499 5 487 6.35e-149 435
Msa0901860 AT2G44480.3 45.979 485 240 6 33 496 57 540 8.86e-149 437
Msa0901860 AT4G21760.1 44.606 482 246 5 26 499 47 515 1.57e-148 436
Msa0901860 AT5G36890.2 45.885 486 227 7 30 495 10 479 1.78e-148 434
Msa0901860 AT5G36890.1 45.885 486 227 7 30 495 10 479 1.90e-148 434
Msa0901860 AT4G21760.2 43.902 492 245 5 26 499 47 525 3.33e-148 435
Msa0901860 AT1G02850.5 46.122 490 218 8 44 495 27 508 3.96e-148 434
Msa0901860 AT1G02850.4 46.029 491 218 9 44 495 27 509 1.53e-146 430
Msa0901860 AT5G54570.3 50.585 427 190 4 37 442 24 450 3.22e-145 424
Msa0901860 AT1G02850.1 46.039 467 202 8 44 495 27 458 2.33e-142 417
Msa0901860 AT5G24550.1 45.287 488 242 7 35 497 24 511 3.06e-142 419
Msa0901860 AT3G60130.1 46.947 475 226 8 43 495 30 500 5.67e-142 418
Msa0901860 AT1G61810.1 45.339 472 236 6 48 497 38 509 3.07e-141 416
Msa0901860 AT4G27830.1 43.000 500 251 9 12 495 3 484 8.12e-141 415
Msa0901860 AT5G54570.2 51.716 408 175 5 110 495 1 408 3.67e-138 405
Msa0901860 AT3G60140.1 43.366 505 255 9 17 497 7 504 2.94e-137 408
Msa0901860 AT1G61810.3 45.415 458 228 6 48 483 38 495 7.46e-136 404
Msa0901860 AT1G60090.2 43.041 467 244 6 43 495 24 482 3.80e-135 400
Msa0901860 AT4G27820.1 44.989 469 235 7 42 495 22 482 6.98e-135 400
Msa0901860 AT2G44470.3 42.913 508 258 11 17 497 5 507 8.20e-135 402
Msa0901860 AT5G24540.1 44.732 503 253 7 20 497 9 511 1.03e-134 400
Msa0901860 AT1G60090.1 42.463 471 248 6 43 495 24 489 2.29e-134 399
Msa0901860 AT2G44460.1 45.490 510 247 11 15 498 3 507 3.96e-134 400
Msa0901860 AT1G51470.1 44.239 486 240 11 34 497 35 511 1.29e-131 392
Msa0901860 AT4G22100.1 41.845 466 249 7 45 495 24 482 1.73e-130 389
Msa0901860 AT1G47600.2 44.306 483 243 12 34 497 35 510 2.09e-130 388
Msa0901860 AT1G47600.1 44.215 484 243 12 34 497 35 511 4.37e-130 387
Msa0901860 AT1G45191.4 41.901 463 255 5 44 498 30 486 8.26e-129 384
Msa0901860 AT1G75940.1 44.444 486 232 12 43 495 37 517 1.71e-128 384
Msa0901860 AT2G44490.1 42.678 478 246 10 45 495 16 492 9.61e-128 383
Msa0901860 AT3G62750.1 41.975 486 246 9 26 495 8 473 1.67e-127 380
Msa0901860 AT3G62750.2 41.975 486 246 9 26 495 34 499 5.43e-127 380
Msa0901860 AT3G21370.1 43.711 485 241 12 40 495 30 511 4.70e-126 378
Msa0901860 AT2G44480.2 46.192 407 199 4 110 496 1 407 1.82e-125 372
Msa0901860 AT1G66280.1 42.178 505 262 11 16 495 11 510 2.52e-125 376
Msa0901860 AT3G09260.1 41.235 502 265 10 20 497 17 512 5.43e-125 375
Msa0901860 AT3G60120.1 42.742 496 251 11 30 497 1 491 5.63e-125 375
Msa0901860 AT1G45191.2 40.938 469 257 6 44 498 30 492 8.35e-125 374
Msa0901860 AT5G26000.1 44.304 474 233 9 48 495 43 511 1.30e-124 375
Msa0901860 AT5G28510.1 41.176 510 270 11 17 497 13 521 1.72e-124 374
Msa0901860 AT1G45191.6 40.717 474 256 6 44 498 30 497 2.27e-124 373
Msa0901860 AT1G02850.3 47.015 402 173 6 44 409 27 424 6.24e-124 369
Msa0901860 AT3G18070.5 71.369 241 53 2 186 410 94 334 2.48e-123 364
Msa0901860 AT3G18070.5 66.197 71 24 0 34 104 21 91 5.65e-25 106
Msa0901860 AT1G45191.1 40.249 482 259 6 44 498 30 509 4.52e-123 370
Msa0901860 AT1G66270.1 42.191 493 257 10 30 497 23 512 3.75e-122 368
Msa0901860 AT3G03640.1 41.292 511 262 13 18 497 11 514 6.49e-122 367
Msa0901860 AT2G32860.2 42.348 477 250 8 48 499 99 575 1.60e-121 369
Msa0901860 AT2G32860.1 42.857 476 248 10 48 499 99 574 8.90e-121 367
Msa0901860 AT1G61810.5 45.232 409 203 5 110 497 1 409 2.19e-120 360
Msa0901860 AT1G52400.3 43.568 482 238 14 43 495 39 515 2.92e-120 363
Msa0901860 AT1G52400.1 43.568 482 238 14 43 495 39 515 2.92e-120 363
Msa0901860 AT1G66270.2 41.785 493 257 11 30 497 23 510 1.20e-118 358
Msa0901860 AT3G60130.2 46.005 413 198 7 104 495 40 448 1.71e-118 356
Msa0901860 AT3G60130.3 46.269 402 202 7 104 495 40 437 1.85e-117 353
Msa0901860 AT3G18070.6 72.973 222 44 2 205 410 1 222 3.58e-116 342
Msa0901860 AT3G62740.1 38.843 484 261 9 30 495 12 478 4.95e-116 351
Msa0901860 AT5G25980.2 38.520 527 279 13 8 495 2 522 7.55e-115 350
Msa0901860 AT4G27830.2 44.030 402 203 7 110 495 1 396 8.07e-115 345
Msa0901860 AT5G24540.2 43.274 446 230 5 20 442 9 454 3.03e-113 342
Msa0901860 AT2G44470.1 41.020 451 236 9 17 442 5 450 1.97e-112 340
Msa0901860 AT1G61820.3 47.397 365 170 5 154 497 4 367 2.23e-110 332
Msa0901860 AT1G60270.1 46.629 356 175 5 43 387 24 375 9.81e-110 331
Msa0901860 AT5G26000.2 44.258 418 205 7 48 442 43 455 1.13e-109 333
Msa0901860 AT4G27820.2 44.389 401 204 6 110 495 1 397 1.22e-109 332
Msa0901860 AT4G27820.3 44.389 401 204 6 110 495 1 397 1.22e-109 332
Msa0901860 AT3G62750.4 41.475 434 220 8 26 445 34 447 2.63e-109 333
Msa0901860 AT2G44480.4 50.467 321 154 4 33 350 57 375 3.32e-109 330
Msa0901860 AT1G61810.4 43.979 382 194 5 48 409 38 419 4.50e-109 331
Msa0901860 AT3G60140.2 41.646 413 214 6 17 409 7 412 1.50e-107 328
Msa0901860 AT2G44450.2 49.157 356 161 5 161 499 1 353 1.95e-106 322
Msa0901860 AT3G62750.6 42.040 402 203 7 110 495 1 388 6.92e-104 317
Msa0901860 AT3G62750.5 42.040 402 203 7 110 495 1 388 6.92e-104 317
Msa0901860 AT3G62740.2 39.161 429 228 8 30 442 12 423 1.71e-102 314
Msa0901860 AT1G45191.5 44.713 331 177 2 44 372 30 356 2.49e-102 313
Msa0901860 AT1G45191.3 44.713 331 177 2 44 372 30 356 3.77e-102 313
Msa0901860 AT1G52400.2 42.857 427 212 12 43 442 39 460 1.48e-101 313
Msa0901860 AT5G25980.3 37.580 471 252 11 8 442 2 466 2.55e-100 310
Msa0901860 AT5G25980.1 37.580 471 252 11 8 442 2 466 2.55e-100 310
Msa0901860 AT2G44470.2 43.526 363 193 7 17 372 5 362 8.20e-100 306
Msa0901860 AT3G62750.7 45.015 331 168 3 26 356 8 324 4.96e-98 300
Msa0901860 AT3G62750.8 45.015 331 168 3 26 356 8 324 4.96e-98 300
Msa0901860 AT3G62750.3 45.015 331 168 3 26 356 34 350 2.60e-97 301
Msa0901860 AT2G44460.2 45.833 360 172 8 161 498 3 361 3.39e-92 288
Msa0901860 AT1G61810.2 47.909 263 135 2 48 308 38 300 5.39e-85 265
Msa0901860 AT1G60270.2 45.675 289 145 4 110 387 1 288 2.84e-84 262
Msa0901860 AT5G48375.1 38.049 410 185 8 70 461 53 411 1.20e-83 266
Msa0901860 AT2G44480.5 43.894 303 152 3 212 496 1 303 2.33e-81 255
Msa0901860 AT1G51490.1 40.181 331 170 11 50 371 27 338 1.40e-69 228
Msa0901860 AT5G16580.1 37.201 293 158 7 178 451 12 297 3.12e-52 179

Find 96 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAATAATGTTTGTGGTTT+TGG 0.166444 6_1:+98829058 Msa0901860:three_prime_UTR
TTCATTCATCCCCTTGTTTA+TGG 0.184377 6_1:+98827785 Msa0901860:CDS
TTCTTGTTAGTTCAGTTAAT+GGG 0.228286 6_1:+98824519 Msa0901860:CDS
TGTTTCACTTCACTTGAAAA+TGG 0.258890 6_1:+98824436 Msa0901860:exon
CCTATGTACTTATCTGAAAA+TGG 0.261140 6_1:+98828560 Msa0901860:CDS
GTATCCAAATGCACTGTTTC+AGG 0.271354 6_1:-98824551 None:intergenic
AGGGTCGTGGCCCTAGTATT+TGG 0.275337 6_1:+98824663 Msa0901860:CDS
AACCAATATGCAGACATCTT+AGG 0.282698 6_1:-98828933 None:intergenic
ATGGAACTGGCAAGGTAAAT+TGG 0.292285 6_1:+98826479 Msa0901860:CDS
GCTGCTCTTGGCTATGATAA+TGG 0.303187 6_1:+98826951 Msa0901860:CDS
GTTCTTGTTAGTTCAGTTAA+TGG 0.310784 6_1:+98824518 Msa0901860:CDS
AATTGTACAGCTGGAAATTC+AGG 0.314656 6_1:+98827011 Msa0901860:CDS
GATAACTTTGAATGGAGATT+AGG 0.315709 6_1:+98828855 Msa0901860:CDS
ATAACTTTGAATGGAGATTA+GGG 0.318193 6_1:+98828856 Msa0901860:CDS
GGAAGGTGTTCAAAAGAATA+TGG 0.324523 6_1:+98826987 Msa0901860:CDS
CTTCCTCCTCAGTAAACTTT+GGG 0.334125 6_1:-98827850 None:intergenic
GATTGATAGCCAGGGACTTT+TGG 0.337835 6_1:-98827956 None:intergenic
ACCAATATGCAGACATCTTA+GGG 0.340920 6_1:-98828932 None:intergenic
AAATTGTGAGCTACAGTATA+AGG 0.347951 6_1:-98827041 None:intergenic
GAAACAGTGCATTTGGATAC+TGG 0.355962 6_1:+98824554 Msa0901860:CDS
ACAGGGATTGTCGCAAATAA+TGG 0.357337 6_1:+98826070 Msa0901860:intron
TTTCCTAAAGGGTTTGTGTT+TGG 0.360877 6_1:+98824596 Msa0901860:CDS
ACTTCCTCCTCAGTAAACTT+TGG 0.375248 6_1:-98827851 None:intergenic
ACTCCAAACACAAACCCTTT+AGG 0.380059 6_1:-98824599 None:intergenic
AGTGCCTGAAACAGTGCATT+TGG 0.386606 6_1:+98824547 Msa0901860:CDS
GGGTCGTGGCCCTAGTATTT+GGG 0.395338 6_1:+98824664 Msa0901860:CDS
CCCCTAAGATGTCTGCATAT+TGG 0.396318 6_1:+98828931 Msa0901860:CDS
CATTGCTTGATAACTTTGAA+TGG 0.399596 6_1:+98828847 Msa0901860:CDS
ATGAAAACATCCCAAATACT+AGG 0.410209 6_1:-98824674 None:intergenic
TCAGCCTTTGATCTTGTAAG+AGG 0.416498 6_1:-98827403 None:intergenic
GATGATGGAGCAAATGTGTT+TGG 0.416603 6_1:+98828810 Msa0901860:CDS
CCAAGAGTTGTTGCTGCTCT+TGG 0.417648 6_1:+98826939 Msa0901860:CDS
GATCGATTACTTACTCGAAA+AGG 0.419740 6_1:+98826528 Msa0901860:CDS
TTCCAATCCGATTGATAGCC+AGG 0.422659 6_1:-98827965 None:intergenic
GAAAAGCAAAAGGGTAGGAT+TGG 0.432684 6_1:+98827352 Msa0901860:CDS
AGAACTATGCAAAATATTGT+TGG 0.445283 6_1:+98827818 Msa0901860:CDS
GAATATGGAAATTGTACAGC+TGG 0.451912 6_1:+98827002 Msa0901860:CDS
AACTTTGATACAGATGGAAC+TGG 0.454790 6_1:+98826466 Msa0901860:intron
GAGCTAAAGGAAGGTCATAA+TGG 0.457252 6_1:-98826677 None:intergenic
ATCGATTACTTACTCGAAAA+GGG 0.458413 6_1:+98826529 Msa0901860:CDS
CTAAAGAAAGCTATAGATGA+TGG 0.459612 6_1:+98828795 Msa0901860:CDS
AACAACTCTTGGTTCATTGA+AGG 0.467652 6_1:-98826928 None:intergenic
GAACTATGCAAAATATTGTT+GGG 0.468791 6_1:+98827819 Msa0901860:CDS
GTTTCTTATGTTTCTAATTG+TGG 0.472158 6_1:+98829033 Msa0901860:three_prime_UTR
TATTTCAACTCAAGAGCTAA+AGG 0.473991 6_1:-98826690 None:intergenic
TTAGGGTACACATCAAGGTT+TGG 0.474691 6_1:+98828873 Msa0901860:CDS
CCAAGAGCAGCAACAACTCT+TGG 0.484195 6_1:-98826939 None:intergenic
GGAGATTAGGGTACACATCA+AGG 0.485807 6_1:+98828868 Msa0901860:CDS
TCACTTGAAAATGGTGATGT+TGG 0.490282 6_1:+98824445 Msa0901860:exon
ATGGAGATAGAGTTAAGAAC+TGG 0.490424 6_1:+98826901 Msa0901860:CDS
TGCTTATCAAGTAGAGGGTA+TGG 0.494673 6_1:+98824631 Msa0901860:CDS
AAAAGTCCCTGGCTATCAAT+CGG 0.514691 6_1:+98827958 Msa0901860:CDS
TTTGAAAATGTTACATTACC+AGG 0.518199 6_1:-98828720 None:intergenic
TTGGCTATACAATGTACCAT+GGG 0.531425 6_1:+98828490 Msa0901860:CDS
TCCCTGGCTATCAATCGGAT+TGG 0.537085 6_1:+98827963 Msa0901860:CDS
ACAGGAAGATATAGATCTCA+TGG 0.540465 6_1:+98826311 Msa0901860:intron
AACTTCTGCTTATCAAGTAG+AGG 0.544999 6_1:+98824625 Msa0901860:CDS
GAGGGTATGGCTAGCAAAGA+GGG 0.549403 6_1:+98824644 Msa0901860:CDS
TAAGTACTTACACAACATTA+CGG 0.552411 6_1:-98826728 None:intergenic
CAAATCAGTAATGTACATCA+AGG 0.552581 6_1:+98828520 Msa0901860:CDS
TTTAGGAAAAGCAAAAGGGT+AGG 0.554677 6_1:+98827347 Msa0901860:intron
TCTTGTTAGTTCAGTTAATG+GGG 0.568038 6_1:+98824520 Msa0901860:CDS
GTGGTAGTGAATAATGTTTG+TGG 0.579531 6_1:+98829052 Msa0901860:three_prime_UTR
TGAAAACATCCCAAATACTA+GGG 0.582780 6_1:-98824673 None:intergenic
ACAAGAATAAACTATTACAA+AGG 0.585424 6_1:+98828759 Msa0901860:CDS
TATCAAGCAATGACCAAGCA+TGG 0.588296 6_1:-98828836 None:intergenic
ATTGTCGCAAATAATGGCAC+AGG 0.588601 6_1:+98826076 Msa0901860:CDS
CAAGCAAAACCAAAAGTCCC+TGG 0.590365 6_1:+98827947 Msa0901860:CDS
TGGACCACGAGATTGAGAAC+CGG 0.593138 6_1:-98826356 None:intergenic
TTTCAGATAAGTACATAGGT+GGG 0.594742 6_1:-98828556 None:intergenic
GGAGGAAGTGAAACTTGTGA+AGG 0.603714 6_1:+98827865 Msa0901860:CDS
ACTTCTGCTTATCAAGTAGA+GGG 0.604107 6_1:+98824626 Msa0901860:CDS
CTTGGCTATACAATGTACCA+TGG 0.606444 6_1:+98828489 Msa0901860:CDS
TGAGCCTCTTACAAGATCAA+AGG 0.608751 6_1:+98827399 Msa0901860:CDS
AGAGGGTATGGCTAGCAAAG+AGG 0.611917 6_1:+98824643 Msa0901860:CDS
TATGTAGGCATGGATGATCC+TGG 0.616048 6_1:+98828702 Msa0901860:intron
ATGGCTAGCAAAGAGGGTCG+TGG 0.616104 6_1:+98824650 Msa0901860:CDS
TCAACTCAAGAGCTAAAGGA+AGG 0.616683 6_1:-98826686 None:intergenic
GCTCTTGAGTTGAAATACAA+CGG 0.617381 6_1:+98826696 Msa0901860:CDS
GAGGAAGTGAAACTTGTGAA+GGG 0.622041 6_1:+98827866 Msa0901860:CDS
TCCAATCCGATTGATAGCCA+GGG 0.623481 6_1:-98827964 None:intergenic
ACTGATTTGTATAAGCCCCA+TGG 0.625136 6_1:-98828506 None:intergenic
TTGGATACTCACCATAAACA+AGG 0.626001 6_1:-98827796 None:intergenic
CAGTGCATTTGGATACTGGA+GGG 0.628351 6_1:+98824558 Msa0901860:CDS
ATGTGTTTGGATACCATGCT+TGG 0.628865 6_1:+98828823 Msa0901860:CDS
TGATACAGATGGAACTGGCA+AGG 0.632413 6_1:+98826471 Msa0901860:intron
TGGATACTCACCATAAACAA+GGG 0.638550 6_1:-98827795 None:intergenic
ACTGGCAAGGTAAATTGGAA+AGG 0.638610 6_1:+98826484 Msa0901860:CDS
TAATGGTAGAGATTTGCGTA+AGG 0.644051 6_1:-98826660 None:intergenic
ACTCCCAAAGTTTACTGAGG+AGG 0.653162 6_1:+98827847 Msa0901860:CDS
GGATACTCACCATAAACAAG+GGG 0.663952 6_1:-98827794 None:intergenic
ACAGTGCATTTGGATACTGG+AGG 0.685224 6_1:+98824557 Msa0901860:CDS
AATACCGGTTCTCAATCTCG+TGG 0.697678 6_1:+98826352 Msa0901860:CDS
CCAATATGCAGACATCTTAG+GGG 0.704502 6_1:-98828931 None:intergenic
CAGACTCCCAAAGTTTACTG+AGG 0.726786 6_1:+98827844 Msa0901860:CDS
TGGCTATACAATGTACCATG+GGG 0.741096 6_1:+98828491 Msa0901860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTAAAATTTTTAAAAA+TGG - chr6_1:98828026-98828045 None:intergenic 0.0%
!! TAATTAAGAATAATTAATTG+AGG - chr6_1:98824730-98824749 None:intergenic 10.0%
!!! TTAATCTCTTTTAAAAAAAA+TGG + chr6_1:98825176-98825195 Msa0901860:intron 10.0%
!! TTCAATTAAATTTCAATTAA+AGG - chr6_1:98826143-98826162 None:intergenic 10.0%
!!! AGTTTAAAATTGATTATTAA+TGG - chr6_1:98826450-98826469 None:intergenic 10.0%
!! ATCAAAATATTAATATTACT+TGG - chr6_1:98827112-98827131 None:intergenic 10.0%
!!! GATTTTTTTCAAATTATTAA+CGG + chr6_1:98827657-98827676 Msa0901860:intron 10.0%
!!! TTGTTTTGATGAAATTATTT+TGG + chr6_1:98824846-98824865 Msa0901860:intron 15.0%
!!! TGTTTTGATGAAATTATTTT+GGG + chr6_1:98824847-98824866 Msa0901860:intron 15.0%
!! ACAAATCTTAATAAAAATCT+AGG - chr6_1:98825404-98825423 None:intergenic 15.0%
!!! TTTTAACAAATGAGTAATAA+CGG - chr6_1:98825902-98825921 None:intergenic 15.0%
!! ACATTATATAAGATGTTATT+TGG - chr6_1:98826227-98826246 None:intergenic 15.0%
!! AGAAAAATATTTGAATTACT+TGG - chr6_1:98826390-98826409 None:intergenic 15.0%
!!! AAATTTTCTATCAACATTTT+CGG - chr6_1:98826760-98826779 None:intergenic 15.0%
!!! AAATGTGATTTTATTTTATC+TGG + chr6_1:98826792-98826811 Msa0901860:intron 15.0%
!!! TTTTGATTCTTTTTTAGATT+AGG + chr6_1:98827125-98827144 Msa0901860:intron 15.0%
!! AATTTCTTAGTGTATATTTA+TGG + chr6_1:98827745-98827764 Msa0901860:intron 15.0%
!!! AAATTTTTAAAAATGGTTGA+AGG - chr6_1:98828019-98828038 None:intergenic 15.0%
!! GTAAATATTTAATGATATGT+AGG + chr6_1:98828687-98828706 Msa0901860:intron 15.0%
!! AAGAATAATTAATTGAGGTT+AGG - chr6_1:98824725-98824744 None:intergenic 20.0%
!! TAATGAAAGACTATACAAAT+TGG + chr6_1:98824798-98824817 Msa0901860:intron 20.0%
!! TATAAGATTGAAATAGCAAA+AGG - chr6_1:98824977-98824996 None:intergenic 20.0%
!! TTCAATTATGTTATGTCTAT+TGG - chr6_1:98825109-98825128 None:intergenic 20.0%
!!! AAAATGGTAAGATTTTGATT+TGG + chr6_1:98825192-98825211 Msa0901860:intron 20.0%
!!! ACAGTTTTATGTCTTTTTTT+GGG + chr6_1:98825469-98825488 Msa0901860:intron 20.0%
!! TGGTTATCAAATATTACTAT+TGG - chr6_1:98825538-98825557 None:intergenic 20.0%
!!! TTTATAGTATTTCCTTTTAG+AGG - chr6_1:98825571-98825590 None:intergenic 20.0%
!! TGATATTCTCAAATTATTAG+TGG - chr6_1:98825788-98825807 None:intergenic 20.0%
!! TGCATATAATAGAAAGAAAA+GGG - chr6_1:98825962-98825981 None:intergenic 20.0%
!! TTGCATATAATAGAAAGAAA+AGG - chr6_1:98825963-98825982 None:intergenic 20.0%
!! TAAATGTAAGATTCATACTA+AGG - chr6_1:98826199-98826218 None:intergenic 20.0%
!!! ATTTTAAACTTTGATACAGA+TGG + chr6_1:98826460-98826479 Msa0901860:intron 20.0%
!!! ATGTTGATAGAAAATTTTAC+AGG + chr6_1:98826763-98826782 Msa0901860:intron 20.0%
!!! AATGATCGATGTTTTAAAAT+TGG + chr6_1:98826833-98826852 Msa0901860:intron 20.0%
!!! TTTTTTTAGGAAAAGCAAAA+GGG + chr6_1:98827343-98827362 Msa0901860:intron 20.0%
!! AAATTAACAAATATGAAGCA+CGG - chr6_1:98827730-98827749 None:intergenic 20.0%
!!! ATTGATTTTCTTGCTAAATA+TGG + chr6_1:98828298-98828317 Msa0901860:intron 20.0%
!!! ATTTATATGTGATACTTTTC+AGG + chr6_1:98828457-98828476 Msa0901860:intron 20.0%
!!! AAAATGAAGCATTCAAATAA+AGG - chr6_1:98828608-98828627 None:intergenic 20.0%
!! ACAAGAATAAACTATTACAA+AGG + chr6_1:98828759-98828778 Msa0901860:CDS 20.0%
!! AGCTAAAAAAAATGTTTCTT+AGG + chr6_1:98828991-98829010 Msa0901860:intron 20.0%
! TTCTTGTTAGTTCAGTTAAT+GGG + chr6_1:98824519-98824538 Msa0901860:CDS 25.0%
!!! ATACAAATTGGTGTTTTCAT+TGG + chr6_1:98824810-98824829 Msa0901860:intron 25.0%
!!! TATGTTGGTTTGTGTAAAAT+TGG + chr6_1:98824908-98824927 Msa0901860:intron 25.0%
!!! ATGTTGGTTTGTGTAAAATT+GGG + chr6_1:98824909-98824928 Msa0901860:intron 25.0%
! ATGTAAAGTGTACATCTTTA+CGG + chr6_1:98825260-98825279 Msa0901860:intron 25.0%
!!! AAAAGAAGTATTTTTTGGAC+TGG - chr6_1:98825341-98825360 None:intergenic 25.0%
!! GTCCAAAAAATACTTCTTTT+TGG + chr6_1:98825341-98825360 Msa0901860:intron 25.0%
!!! GACCAAAAAGAAGTATTTTT+TGG - chr6_1:98825346-98825365 None:intergenic 25.0%
!!! CACAGTTTTATGTCTTTTTT+TGG + chr6_1:98825468-98825487 Msa0901860:intron 25.0%
! TAACTCCTAAAAATAAGTAG+TGG - chr6_1:98825497-98825516 None:intergenic 25.0%
! AGGAAATACTATAAACAACT+TGG + chr6_1:98825576-98825595 Msa0901860:intron 25.0%
! AATTAACACAATCACAAAAC+TGG + chr6_1:98825924-98825943 Msa0901860:intron 25.0%
! AATTAACCTTGAGATCAAAT+TGG + chr6_1:98825990-98826009 Msa0901860:intron 25.0%
!! TCTTTGTTTCAATTCATAAC+AGG + chr6_1:98826052-98826071 Msa0901860:intron 25.0%
!! CTTTGTTTCAATTCATAACA+GGG + chr6_1:98826053-98826072 Msa0901860:intron 25.0%
!! AAGATTCATACTAAGGATTT+TGG - chr6_1:98826192-98826211 None:intergenic 25.0%
! TGATTATATATATGTGTGTG+TGG + chr6_1:98826252-98826271 Msa0901860:intron 25.0%
!!! AGCTAAATTTTGATCAATAC+CGG + chr6_1:98826337-98826356 Msa0901860:CDS 25.0%
! TGAATTACTTGGAAAAATTC+TGG - chr6_1:98826379-98826398 None:intergenic 25.0%
!! TCGAAATACTAACATAGTTT+TGG + chr6_1:98826573-98826592 Msa0901860:intron 25.0%
! TAAGTACTTACACAACATTA+CGG - chr6_1:98826731-98826750 None:intergenic 25.0%
!!! GATTTTTGTTTCAAGACATA+TGG + chr6_1:98826882-98826901 Msa0901860:CDS 25.0%
!!! GTTTTGATGTTTTTATCTTG+TGG + chr6_1:98827308-98827327 Msa0901860:intron 25.0%
!!! GTTTTTTTAGGAAAAGCAAA+AGG + chr6_1:98827342-98827361 Msa0901860:intron 25.0%
!! GAATTTTGTTGGATTTTGTT+TGG + chr6_1:98827374-98827393 Msa0901860:CDS 25.0%
! TTCAGTGTAATTATATGTGT+CGG - chr6_1:98827631-98827650 None:intergenic 25.0%
! TTTCAAATTATTAACGGTGT+CGG + chr6_1:98827663-98827682 Msa0901860:intron 25.0%
!! ACAATATTTTGCATAGTTCT+TGG - chr6_1:98827818-98827837 None:intergenic 25.0%
! AGAACTATGCAAAATATTGT+TGG + chr6_1:98827818-98827837 Msa0901860:CDS 25.0%
! GAACTATGCAAAATATTGTT+GGG + chr6_1:98827819-98827838 Msa0901860:CDS 25.0%
! ACATATCTTATAGCCTAAAT+TGG - chr6_1:98828079-98828098 None:intergenic 25.0%
! ATAACAATGACTAAAATCGA+CGG - chr6_1:98828136-98828155 None:intergenic 25.0%
! ATTCATCCTTACAAAAAGAA+GGG - chr6_1:98828642-98828661 None:intergenic 25.0%
! AATTCATCCTTACAAAAAGA+AGG - chr6_1:98828643-98828662 None:intergenic 25.0%
! TATTTAATGATATGTAGGCA+TGG + chr6_1:98828692-98828711 Msa0901860:intron 25.0%
! TTTGAAAATGTTACATTACC+AGG - chr6_1:98828723-98828742 None:intergenic 25.0%
!!! TGGTAATGTAACATTTTCAA+AGG + chr6_1:98828722-98828741 Msa0901860:CDS 25.0%
!! GGTAATGTAACATTTTCAAA+GGG + chr6_1:98828723-98828742 Msa0901860:CDS 25.0%
! ATAACTTTGAATGGAGATTA+GGG + chr6_1:98828856-98828875 Msa0901860:CDS 25.0%
!! GTTTCTTATGTTTCTAATTG+TGG + chr6_1:98829033-98829052 Msa0901860:three_prime_UTR 25.0%
TGTTTCACTTCACTTGAAAA+TGG + chr6_1:98824436-98824455 Msa0901860:exon 30.0%
GTTCTTGTTAGTTCAGTTAA+TGG + chr6_1:98824518-98824537 Msa0901860:CDS 30.0%
TCTTGTTAGTTCAGTTAATG+GGG + chr6_1:98824520-98824539 Msa0901860:CDS 30.0%
! AGTAGAGATGTTTTTCCTAA+AGG + chr6_1:98824584-98824603 Msa0901860:CDS 30.0%
! GTAGAGATGTTTTTCCTAAA+GGG + chr6_1:98824585-98824604 Msa0901860:CDS 30.0%
TGAAAACATCCCAAATACTA+GGG - chr6_1:98824676-98824695 None:intergenic 30.0%
ATGAAAACATCCCAAATACT+AGG - chr6_1:98824677-98824696 None:intergenic 30.0%
! GATGTTTTCATCAAAAAACC+TGG + chr6_1:98824686-98824705 Msa0901860:CDS 30.0%
! CACTAAACCAAAAAGTATGT+TGG + chr6_1:98824893-98824912 Msa0901860:intron 30.0%
! ACACAAACCAACATACTTTT+TGG - chr6_1:98824903-98824922 None:intergenic 30.0%
!! CTTTTAGAGGAGTAACATAA+TGG - chr6_1:98825558-98825577 None:intergenic 30.0%
CATTATGTTACTCCTCTAAA+AGG + chr6_1:98825556-98825575 Msa0901860:intron 30.0%
TCTCAAATTATTAGTGGTGT+CGG - chr6_1:98825782-98825801 None:intergenic 30.0%
TTCAGTGTAATTATATGTGC+CGG + chr6_1:98825813-98825832 Msa0901860:intron 30.0%
CTTAAACCAATTTGATCTCA+AGG - chr6_1:98825999-98826018 None:intergenic 30.0%
TCAAGTATGTTCAATTTGAC+AGG + chr6_1:98826293-98826312 Msa0901860:intron 30.0%
ATCGATTACTTACTCGAAAA+GGG + chr6_1:98826529-98826548 Msa0901860:CDS 30.0%
CTATGTTAGTATTTCGACTA+TGG - chr6_1:98826570-98826589 None:intergenic 30.0%
TATTTCAACTCAAGAGCTAA+AGG - chr6_1:98826693-98826712 None:intergenic 30.0%
!!! TCGATGTTTTAAAATTGGAC+AGG + chr6_1:98826838-98826857 Msa0901860:intron 30.0%
AAATTGTGAGCTACAGTATA+AGG - chr6_1:98827044-98827063 None:intergenic 30.0%
!!! GTGATGTTTGTGGTTTTTTT+AGG + chr6_1:98827330-98827349 Msa0901860:intron 30.0%
! AGAGCTAGAGATTTTCATAT+TGG + chr6_1:98827442-98827461 Msa0901860:CDS 30.0%
! TATTGGCTGGTAAAAATTGT+TGG + chr6_1:98827459-98827478 Msa0901860:intron 30.0%
CATAAGAATTGTATGATGCA+CGG + chr6_1:98827542-98827561 Msa0901860:intron 30.0%
! TTATGGTGTTTAATTTCCAC+AGG + chr6_1:98827762-98827781 Msa0901860:intron 30.0%
AAGAAAATCAATGTCAGTCA+TGG - chr6_1:98828290-98828309 None:intergenic 30.0%
AATATGGAAGATGCTAAGAA+TGG + chr6_1:98828314-98828333 Msa0901860:intron 30.0%
ACTTGTTTCAAACTTACTCT+TGG - chr6_1:98828353-98828372 None:intergenic 30.0%
CAAATCAGTAATGTACATCA+AGG + chr6_1:98828520-98828539 Msa0901860:CDS 30.0%
TTTCAGATAAGTACATAGGT+GGG - chr6_1:98828559-98828578 None:intergenic 30.0%
! TTTTCAGATAAGTACATAGG+TGG - chr6_1:98828560-98828579 None:intergenic 30.0%
! CCATTTTCAGATAAGTACAT+AGG - chr6_1:98828563-98828582 None:intergenic 30.0%
CCTATGTACTTATCTGAAAA+TGG + chr6_1:98828560-98828579 Msa0901860:CDS 30.0%
! TCTTAACCCTTCTTTTTGTA+AGG + chr6_1:98828633-98828652 Msa0901860:intron 30.0%
CTAAAGAAAGCTATAGATGA+TGG + chr6_1:98828795-98828814 Msa0901860:CDS 30.0%
! CATTGCTTGATAACTTTGAA+TGG + chr6_1:98828847-98828866 Msa0901860:CDS 30.0%
GATAACTTTGAATGGAGATT+AGG + chr6_1:98828855-98828874 Msa0901860:CDS 30.0%
! CTCAGCAATTTACTTCTTTT+TGG - chr6_1:98828973-98828992 None:intergenic 30.0%
GTTTCTTAGGTTTCTAATTG+TGG + chr6_1:98829004-98829023 Msa0901860:intron 30.0%
! GTGAATAATGTTTGTGGTTT+TGG + chr6_1:98829058-98829077 Msa0901860:three_prime_UTR 30.0%
!!! GTTTGTGGTTTTGGATAAAA+AGG + chr6_1:98829067-98829086 Msa0901860:three_prime_UTR 30.0%
! TCACTTGAAAATGGTGATGT+TGG + chr6_1:98824445-98824464 Msa0901860:exon 35.0%
TTTCCTAAAGGGTTTGTGTT+TGG + chr6_1:98824596-98824615 Msa0901860:CDS 35.0%
AACTTCTGCTTATCAAGTAG+AGG + chr6_1:98824625-98824644 Msa0901860:CDS 35.0%
ACTTCTGCTTATCAAGTAGA+GGG + chr6_1:98824626-98824645 Msa0901860:CDS 35.0%
TTAGGAAAGAAACACAAACC+AGG - chr6_1:98824707-98824726 None:intergenic 35.0%
! GATTTGGTCTATCTGTTTGT+CGG + chr6_1:98825208-98825227 Msa0901860:intron 35.0%
TATCTGTTTGTCGGAAAAAG+TGG + chr6_1:98825217-98825236 Msa0901860:intron 35.0%
!! GGGTTCCACTACTTATTTTT+AGG + chr6_1:98825489-98825508 Msa0901860:intron 35.0%
ACAGGAAGATATAGATCTCA+TGG + chr6_1:98826311-98826330 Msa0901860:intron 35.0%
AACTTTGATACAGATGGAAC+TGG + chr6_1:98826466-98826485 Msa0901860:intron 35.0%
GATCGATTACTTACTCGAAA+AGG + chr6_1:98826528-98826547 Msa0901860:CDS 35.0%
TTTGTTCCTTAAATCGTTGC+AGG + chr6_1:98826630-98826649 Msa0901860:intron 35.0%
TAATGGTAGAGATTTGCGTA+AGG - chr6_1:98826663-98826682 None:intergenic 35.0%
!! GCTCTTGAGTTGAAATACAA+CGG + chr6_1:98826696-98826715 Msa0901860:CDS 35.0%
! ATTGGACAGGAAAGATTTTG+CGG + chr6_1:98826851-98826870 Msa0901860:intron 35.0%
!! GAAAGATTTTGCGGATTATG+CGG + chr6_1:98826860-98826879 Msa0901860:CDS 35.0%
ATGGAGATAGAGTTAAGAAC+TGG + chr6_1:98826901-98826920 Msa0901860:CDS 35.0%
AACAACTCTTGGTTCATTGA+AGG - chr6_1:98826931-98826950 None:intergenic 35.0%
! ATTCTTTTGAACACCTTCCA+GGG - chr6_1:98826986-98827005 None:intergenic 35.0%
! TATTCTTTTGAACACCTTCC+AGG - chr6_1:98826987-98827006 None:intergenic 35.0%
!! GGAAGGTGTTCAAAAGAATA+TGG + chr6_1:98826987-98827006 Msa0901860:CDS 35.0%
GAATATGGAAATTGTACAGC+TGG + chr6_1:98827002-98827021 Msa0901860:CDS 35.0%
AATTGTACAGCTGGAAATTC+AGG + chr6_1:98827011-98827030 Msa0901860:CDS 35.0%
!! ACGATGTGTCGTTGTTATTT+CGG + chr6_1:98827183-98827202 Msa0901860:intron 35.0%
! GATTTTCATCATGCACTAAG+TGG + chr6_1:98827273-98827292 Msa0901860:intron 35.0%
! TTATCTTGTGGTGATGTTTG+TGG + chr6_1:98827320-98827339 Msa0901860:intron 35.0%
TTTAGGAAAAGCAAAAGGGT+AGG + chr6_1:98827347-98827366 Msa0901860:intron 35.0%
! CTAGAGATTTTCATATTGGC+TGG + chr6_1:98827446-98827465 Msa0901860:CDS 35.0%
!! GTTGTTTCTGTTGTACTAGT+TGG - chr6_1:98827520-98827539 None:intergenic 35.0%
CGTGCATCATACAATTCTTA+TGG - chr6_1:98827544-98827563 None:intergenic 35.0%
!! AAATTATTAACGGTGTCGGT+GGG + chr6_1:98827667-98827686 Msa0901860:intron 35.0%
ACAAATATGAAGCACGGATA+CGG - chr6_1:98827724-98827743 None:intergenic 35.0%
! TTCATTCATCCCCTTGTTTA+TGG + chr6_1:98827785-98827804 Msa0901860:CDS 35.0%
TGGATACTCACCATAAACAA+GGG - chr6_1:98827798-98827817 None:intergenic 35.0%
TTGGATACTCACCATAAACA+AGG - chr6_1:98827799-98827818 None:intergenic 35.0%
!! AAGGGCTCAATTGATTTTGT+TGG + chr6_1:98827884-98827903 Msa0901860:CDS 35.0%
!!! ACTTTTGGTTTTGCTTGATG+AGG - chr6_1:98827944-98827963 None:intergenic 35.0%
! TATCAATCGGATTGGAATGT+AGG + chr6_1:98827971-98827990 Msa0901860:intron 35.0%
! ATCAATCGGATTGGAATGTA+GGG + chr6_1:98827972-98827991 Msa0901860:intron 35.0%
TGATACTTAGAGACTAATGG+TGG - chr6_1:98828050-98828069 None:intergenic 35.0%
GAGTGATACTTAGAGACTAA+TGG - chr6_1:98828053-98828072 None:intergenic 35.0%
AGTATCACTCTCTCCAATTT+AGG + chr6_1:98828063-98828082 Msa0901860:intron 35.0%
!! CTTTTCAGGCATATTCATCT+TGG + chr6_1:98828471-98828490 Msa0901860:intron 35.0%
TTGGCTATACAATGTACCAT+GGG + chr6_1:98828490-98828509 Msa0901860:CDS 35.0%
ACCAATATGCAGACATCTTA+GGG - chr6_1:98828935-98828954 None:intergenic 35.0%
AACCAATATGCAGACATCTT+AGG - chr6_1:98828936-98828955 None:intergenic 35.0%
! GTGGTAGTGAATAATGTTTG+TGG + chr6_1:98829052-98829071 Msa0901860:three_prime_UTR 35.0%
! TGGATAAAAAGGCCTCTTTT+TGG + chr6_1:98829078-98829097 Msa0901860:three_prime_UTR 35.0%
ACATTGTAGAGACCAAAAAG+AGG - chr6_1:98829093-98829112 None:intergenic 35.0%
GTATCCAAATGCACTGTTTC+AGG - chr6_1:98824554-98824573 None:intergenic 40.0%
GAAACAGTGCATTTGGATAC+TGG + chr6_1:98824554-98824573 Msa0901860:CDS 40.0%
ACTCCAAACACAAACCCTTT+AGG - chr6_1:98824602-98824621 None:intergenic 40.0%
TGCTTATCAAGTAGAGGGTA+TGG + chr6_1:98824631-98824650 Msa0901860:CDS 40.0%
!! GAGTAATAACGGACACTCAT+CGG - chr6_1:98825891-98825910 None:intergenic 40.0%
ACAGGGATTGTCGCAAATAA+TGG + chr6_1:98826070-98826089 Msa0901860:intron 40.0%
ATTGTCGCAAATAATGGCAC+AGG + chr6_1:98826076-98826095 Msa0901860:CDS 40.0%
ATGGAACTGGCAAGGTAAAT+TGG + chr6_1:98826479-98826498 Msa0901860:CDS 40.0%
ACTGGCAAGGTAAATTGGAA+AGG + chr6_1:98826484-98826503 Msa0901860:CDS 40.0%
GTAATGCCTGCAACGATTTA+AGG - chr6_1:98826639-98826658 None:intergenic 40.0%
GAGCTAAAGGAAGGTCATAA+TGG - chr6_1:98826680-98826699 None:intergenic 40.0%
TCAACTCAAGAGCTAAAGGA+AGG - chr6_1:98826689-98826708 None:intergenic 40.0%
! TTCTTTTGAACACCTTCCAG+GGG - chr6_1:98826985-98827004 None:intergenic 40.0%
GCAGCTTCAACAAAATCACA+TGG + chr6_1:98827221-98827240 Msa0901860:intron 40.0%
GAAAAGCAAAAGGGTAGGAT+TGG + chr6_1:98827352-98827371 Msa0901860:CDS 40.0%
! GGGTAGGATTGGAATTTTGT+TGG + chr6_1:98827363-98827382 Msa0901860:CDS 40.0%
TGAGCCTCTTACAAGATCAA+AGG + chr6_1:98827399-98827418 Msa0901860:CDS 40.0%
TCAGCCTTTGATCTTGTAAG+AGG - chr6_1:98827406-98827425 None:intergenic 40.0%
! CAAATTATTAACGGTGTCGG+TGG + chr6_1:98827666-98827685 Msa0901860:intron 40.0%
GGATACTCACCATAAACAAG+GGG - chr6_1:98827797-98827816 None:intergenic 40.0%
CTTCCTCCTCAGTAAACTTT+GGG - chr6_1:98827853-98827872 None:intergenic 40.0%
ACTTCCTCCTCAGTAAACTT+TGG - chr6_1:98827854-98827873 None:intergenic 40.0%
GAGGAAGTGAAACTTGTGAA+GGG + chr6_1:98827866-98827885 Msa0901860:CDS 40.0%
AAAAGTCCCTGGCTATCAAT+CGG + chr6_1:98827958-98827977 Msa0901860:CDS 40.0%
AAACTTACTCTTGGTCCAAC+AGG - chr6_1:98828344-98828363 None:intergenic 40.0%
CTTGGCTATACAATGTACCA+TGG + chr6_1:98828489-98828508 Msa0901860:CDS 40.0%
TGGCTATACAATGTACCATG+GGG + chr6_1:98828491-98828510 Msa0901860:CDS 40.0%
!! ACTGATTTGTATAAGCCCCA+TGG - chr6_1:98828509-98828528 None:intergenic 40.0%
!! GATGATGGAGCAAATGTGTT+TGG + chr6_1:98828810-98828829 Msa0901860:CDS 40.0%
ATGTGTTTGGATACCATGCT+TGG + chr6_1:98828823-98828842 Msa0901860:CDS 40.0%
TATCAAGCAATGACCAAGCA+TGG - chr6_1:98828839-98828858 None:intergenic 40.0%
TTAGGGTACACATCAAGGTT+TGG + chr6_1:98828873-98828892 Msa0901860:CDS 40.0%
CCAATATGCAGACATCTTAG+GGG - chr6_1:98828934-98828953 None:intergenic 40.0%
AGTGCCTGAAACAGTGCATT+TGG + chr6_1:98824547-98824566 Msa0901860:CDS 45.0%
ACAGTGCATTTGGATACTGG+AGG + chr6_1:98824557-98824576 Msa0901860:CDS 45.0%
CAGTGCATTTGGATACTGGA+GGG + chr6_1:98824558-98824577 Msa0901860:CDS 45.0%
!! AATACCGGTTCTCAATCTCG+TGG + chr6_1:98826352-98826371 Msa0901860:CDS 45.0%
TGATACAGATGGAACTGGCA+AGG + chr6_1:98826471-98826490 Msa0901860:intron 45.0%
GCTGCTCTTGGCTATGATAA+TGG + chr6_1:98826951-98826970 Msa0901860:CDS 45.0%
!!! GATAATGGCTTTTTTGCCCC+TGG + chr6_1:98826966-98826985 Msa0901860:CDS 45.0%
CAGACTCCCAAAGTTTACTG+AGG + chr6_1:98827844-98827863 Msa0901860:CDS 45.0%
ACTCCCAAAGTTTACTGAGG+AGG + chr6_1:98827847-98827866 Msa0901860:CDS 45.0%
GGAGGAAGTGAAACTTGTGA+AGG + chr6_1:98827865-98827884 Msa0901860:CDS 45.0%
CAAGCAAAACCAAAAGTCCC+TGG + chr6_1:98827947-98827966 Msa0901860:CDS 45.0%
!! GATTGATAGCCAGGGACTTT+TGG - chr6_1:98827959-98827978 None:intergenic 45.0%
! TCCAATCCGATTGATAGCCA+GGG - chr6_1:98827967-98827986 None:intergenic 45.0%
! TTCCAATCCGATTGATAGCC+AGG - chr6_1:98827968-98827987 None:intergenic 45.0%
TATGTAGGCATGGATGATCC+TGG + chr6_1:98828702-98828721 Msa0901860:intron 45.0%
GGAGATTAGGGTACACATCA+AGG + chr6_1:98828868-98828887 Msa0901860:CDS 45.0%
CCCCTAAGATGTCTGCATAT+TGG + chr6_1:98828931-98828950 Msa0901860:CDS 45.0%
! AGAGGGTATGGCTAGCAAAG+AGG + chr6_1:98824643-98824662 Msa0901860:CDS 50.0%
! GAGGGTATGGCTAGCAAAGA+GGG + chr6_1:98824644-98824663 Msa0901860:CDS 50.0%
GTCTAACTCTGACACGACTC+CGG - chr6_1:98825835-98825854 None:intergenic 50.0%
GACACGACACATGTCTGACA+CGG + chr6_1:98825852-98825871 Msa0901860:intron 50.0%
ACACGACACATGTCTGACAC+GGG + chr6_1:98825853-98825872 Msa0901860:intron 50.0%
TGGACCACGAGATTGAGAAC+CGG - chr6_1:98826359-98826378 None:intergenic 50.0%
CCAAGAGCAGCAACAACTCT+TGG - chr6_1:98826942-98826961 None:intergenic 50.0%
CCAAGAGTTGTTGCTGCTCT+TGG + chr6_1:98826939-98826958 Msa0901860:CDS 50.0%
!!! ATGGCTTTTTTGCCCCTGGA+AGG + chr6_1:98826970-98826989 Msa0901860:CDS 50.0%
TATGATGCACGGACACTCCT+CGG + chr6_1:98827553-98827572 Msa0901860:intron 50.0%
ACGAGGACAAACCTAATCCG+AGG - chr6_1:98827573-98827592 None:intergenic 50.0%
ATGAAGCACGGATACGGACA+CGG - chr6_1:98827718-98827737 None:intergenic 50.0%
CAAGGGGATGAATGAACCTG+TGG - chr6_1:98827781-98827800 None:intergenic 50.0%
TCCCTGGCTATCAATCGGAT+TGG + chr6_1:98827963-98827982 Msa0901860:CDS 50.0%
! GCTAAGAATGGAGTGCCTGT+TGG + chr6_1:98828326-98828345 Msa0901860:intron 50.0%
ATGGCTAGCAAAGAGGGTCG+TGG + chr6_1:98824650-98824669 Msa0901860:CDS 55.0%
AGGGTCGTGGCCCTAGTATT+TGG + chr6_1:98824663-98824682 Msa0901860:CDS 55.0%
GGGTCGTGGCCCTAGTATTT+GGG + chr6_1:98824664-98824683 Msa0901860:CDS 55.0%
CACGACACATGTCTGACACG+GGG + chr6_1:98825854-98825873 Msa0901860:intron 55.0%
CTTGAGCTTACATACGCGCG+CGG - chr6_1:98826278-98826297 None:intergenic 55.0%
CACGACACGTGTCTTACACG+AGG - chr6_1:98827590-98827609 None:intergenic 55.0%
!! TGTCGGTGTCGTGTCAGTGT+CGG - chr6_1:98827614-98827633 None:intergenic 55.0%
GCACGGACACTCCTCGGATT+AGG + chr6_1:98827559-98827578 Msa0901860:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 98824413 98829188 98824413 ID=Msa0901860;Name=Msa0901860
chr6_1 mRNA 98824413 98829188 98824413 ID=Msa0901860-mRNA-1;Parent=Msa0901860;Name=Msa0901860-mRNA-1;_AED=0.14;_eAED=0.14;_QI=42|0.9|0.90|1|0.9|0.81|11|175|499
chr6_1 exon 98824413 98824707 98824413 ID=Msa0901860-mRNA-1:exon:17481;Parent=Msa0901860-mRNA-1
chr6_1 exon 98826074 98826132 98826074 ID=Msa0901860-mRNA-1:exon:17482;Parent=Msa0901860-mRNA-1
chr6_1 exon 98826315 98826390 98826315 ID=Msa0901860-mRNA-1:exon:17483;Parent=Msa0901860-mRNA-1
chr6_1 exon 98826479 98826550 98826479 ID=Msa0901860-mRNA-1:exon:17484;Parent=Msa0901860-mRNA-1
chr6_1 exon 98826652 98826739 98826652 ID=Msa0901860-mRNA-1:exon:17485;Parent=Msa0901860-mRNA-1
chr6_1 exon 98826860 98827112 98826860 ID=Msa0901860-mRNA-1:exon:17486;Parent=Msa0901860-mRNA-1
chr6_1 exon 98827352 98827467 98827352 ID=Msa0901860-mRNA-1:exon:17487;Parent=Msa0901860-mRNA-1
chr6_1 exon 98827784 98827988 98827784 ID=Msa0901860-mRNA-1:exon:17488;Parent=Msa0901860-mRNA-1
chr6_1 exon 98828479 98828581 98828479 ID=Msa0901860-mRNA-1:exon:17489;Parent=Msa0901860-mRNA-1
chr6_1 exon 98828709 98828996 98828709 ID=Msa0901860-mRNA-1:exon:17490;Parent=Msa0901860-mRNA-1
chr6_1 exon 98829027 98829188 98829027 ID=Msa0901860-mRNA-1:exon:17491;Parent=Msa0901860-mRNA-1
chr6_1 five_prime_UTR 98824413 98824454 98824413 ID=Msa0901860-mRNA-1:five_prime_utr;Parent=Msa0901860-mRNA-1
chr6_1 CDS 98824455 98824707 98824455 ID=Msa0901860-mRNA-1:cds;Parent=Msa0901860-mRNA-1
chr6_1 CDS 98826074 98826132 98826074 ID=Msa0901860-mRNA-1:cds;Parent=Msa0901860-mRNA-1
chr6_1 CDS 98826315 98826390 98826315 ID=Msa0901860-mRNA-1:cds;Parent=Msa0901860-mRNA-1
chr6_1 CDS 98826479 98826550 98826479 ID=Msa0901860-mRNA-1:cds;Parent=Msa0901860-mRNA-1
chr6_1 CDS 98826652 98826739 98826652 ID=Msa0901860-mRNA-1:cds;Parent=Msa0901860-mRNA-1
chr6_1 CDS 98826860 98827112 98826860 ID=Msa0901860-mRNA-1:cds;Parent=Msa0901860-mRNA-1
chr6_1 CDS 98827352 98827467 98827352 ID=Msa0901860-mRNA-1:cds;Parent=Msa0901860-mRNA-1
chr6_1 CDS 98827784 98827988 98827784 ID=Msa0901860-mRNA-1:cds;Parent=Msa0901860-mRNA-1
chr6_1 CDS 98828479 98828581 98828479 ID=Msa0901860-mRNA-1:cds;Parent=Msa0901860-mRNA-1
chr6_1 CDS 98828709 98828983 98828709 ID=Msa0901860-mRNA-1:cds;Parent=Msa0901860-mRNA-1
chr6_1 three_prime_UTR 98828984 98828996 98828984 ID=Msa0901860-mRNA-1:three_prime_utr;Parent=Msa0901860-mRNA-1
chr6_1 three_prime_UTR 98829027 98829188 98829027 ID=Msa0901860-mRNA-1:three_prime_utr;Parent=Msa0901860-mRNA-1
Gene Sequence

>Msa0901860

ATGGTGATGTTGGATTCACAACAGCATCAATGTTTCTATTACATGTTTTTCTTCTACTTAGTTGTTCTTGTTAGTTCAGTTAATGGGGTTACAGTGCCTGAAACAGTGCATTTGGATACTGGAGGGTTGAGTAGAGATGTTTTTCCTAAAGGGTTTGTGTTTGGAGTTGCAACTTCTGCTTATCAAGTAGAGGGTATGGCTAGCAAAGAGGGTCGTGGCCCTAGTATTTGGGATGTTTTCATCAAAAAACCTGGGATTGTCGCAAATAATGGCACAGGAGAAGTTTCTGTCGATCAATATCATCGCTACAAAGAAGATATAGATCTCATGGCAAAGCTAAATTTTGATCAATACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAAATGGAACTGGCAAGGTAAATTGGAAAGGTGTAGCATACTACAACAGATTGATCGATTACTTACTCGAAAAGGGCATTACTCCTTACGCAAATCTCTACCATTATGACCTTCCTTTAGCTCTTGAGTTGAAATACAACGGTTTATTGAGCCGTAATGTTGTGAAAGATTTTGCGGATTATGCGGATTTTTGTTTCAAGACATATGGAGATAGAGTTAAGAACTGGATGACCTTCAATGAACCAAGAGTTGTTGCTGCTCTTGGCTATGATAATGGCTTTTTTGCCCCTGGAAGGTGTTCAAAAGAATATGGAAATTGTACAGCTGGAAATTCAGGAACTGAGCCTTATACTGTAGCTCACAATTTGATATTGTCACATGCTGCTGCTGCTCAAAGATATAGAGAGAAATACCAAGAAAAGCAAAAGGGTAGGATTGGAATTTTGTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCTGATAACTACGCTGCTCAAAGAGCTAGAGATTTTCATATTGGCTGGTTCATTCATCCCCTTGTTTATGGTGAGTATCCAAGAACTATGCAAAATATTGTTGGGAACAGACTCCCAAAGTTTACTGAGGAGGAAGTGAAACTTGTGAAGGGCTCAATTGATTTTGTTGGTATTAATCAATATACTACTTACTACATGTATGATCCTCATCAAGCAAAACCAAAAGTCCCTGGCTATCAATCGGATTGGAATGCATATTCATCTTGGCTATACAATGTACCATGGGGCTTATACAAATCAGTAATGTACATCAAGGAGCATTATAAAAACCCACCTATGTACTTATCTGAAAATGGCATGGATGATCCTGGTAATGTAACATTTTCAAAGGGTTTGCATGACACAACAAGAATAAACTATTACAAAGGCTATTTGACTCAACTAAAGAAAGCTATAGATGATGGAGCAAATGTGTTTGGATACCATGCTTGGTCATTGCTTGATAACTTTGAATGGAGATTAGGGTACACATCAAGGTTTGGTATTGTCTATGTTGACTTCAAAACTCTCAAGAGAACCCCTAAGATGTCTGCATATTGGTTCAAGCAGCTACTTACCAAAAAGAAGTAA
Protein sequence

>Msa0901860

MVMLDSQQHQCFYYMFFFYLVVLVSSVNGVTVPETVHLDTGGLSRDVFPKGFVFGVATSAYQVEGMASKEGRGPSIWDVFIKKPGIVANNGTGEVSVDQYHRYKEDIDLMAKLNFDQYRFSISWSRIFPNGTGKVNWKGVAYYNRLIDYLLEKGITPYANLYHYDLPLALELKYNGLLSRNVVKDFADYADFCFKTYGDRVKNWMTFNEPRVVAALGYDNGFFAPGRCSKEYGNCTAGNSGTEPYTVAHNLILSHAAAAQRYREKYQEKQKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHIGWFIHPLVYGEYPRTMQNIVGNRLPKFTEEEVKLVKGSIDFVGINQYTTYYMYDPHQAKPKVPGYQSDWNAYSSWLYNVPWGLYKSVMYIKEHYKNPPMYLSENGMDDPGNVTFSKGLHDTTRINYYKGYLTQLKKAIDDGANVFGYHAWSLLDNFEWRLGYTSRFGIVYVDFKTLKRTPKMSAYWFKQLLTKKK*