Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041500 | XP_024626078.1 | 95.380 | 303 | 14 | 0 | 4 | 306 | 11 | 313 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041500 | sp|Q66GR8|NET3A_ARATH | 38.489 | 278 | 115 | 10 | 11 | 274 | 6 | 241 | 4.42e-45 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041500 | G7KQY6 | 95.380 | 303 | 14 | 0 | 4 | 306 | 2 | 304 | 0.0 | 610 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029960 | Msa1041500 | 0.804415 | 2.184300e-49 | -8.615850e-47 |
| Msa1041500 | Msa1081540 | 0.833419 | 5.389974e-56 | -8.615850e-47 |
| Msa1041500 | Msa1166440 | 0.951496 | 1.805512e-109 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041500 | MtrunA17_Chr7g0268631 | 95.380 | 303 | 14 | 0 | 4 | 306 | 45 | 347 | 0.0 | 609 |
| Msa1041500 | MtrunA17_Chr1g0196081 | 57.895 | 247 | 81 | 6 | 6 | 250 | 10 | 235 | 1.70e-81 | 254 |
| Msa1041500 | MtrunA17_Chr1g0196081 | 57.143 | 126 | 54 | 0 | 168 | 293 | 364 | 489 | 1.85e-37 | 139 |
| Msa1041500 | MtrunA17_Chr1g0204981 | 48.649 | 111 | 41 | 3 | 12 | 109 | 14 | 121 | 1.21e-27 | 113 |
| Msa1041500 | MtrunA17_Chr5g0394641 | 38.953 | 172 | 81 | 4 | 12 | 183 | 14 | 161 | 1.36e-26 | 110 |
| Msa1041500 | MtrunA17_Chr1g0185241 | 54.945 | 91 | 38 | 2 | 12 | 102 | 16 | 103 | 1.48e-26 | 110 |
| Msa1041500 | MtrunA17_Chr5g0432781 | 64.557 | 79 | 25 | 2 | 12 | 90 | 22 | 97 | 1.78e-25 | 106 |
| Msa1041500 | MtrunA17_Chr5g0412211 | 49.000 | 100 | 43 | 3 | 12 | 106 | 11 | 107 | 1.91e-25 | 106 |
| Msa1041500 | MtrunA17_Chr7g0260161 | 51.579 | 95 | 43 | 2 | 8 | 102 | 10 | 101 | 2.46e-25 | 106 |
| Msa1041500 | MtrunA17_Chr8g0367521 | 44.565 | 92 | 48 | 2 | 12 | 103 | 11 | 99 | 1.66e-21 | 95.1 |
| Msa1041500 | MtrunA17_Chr5g0427501 | 49.367 | 79 | 37 | 2 | 12 | 90 | 11 | 86 | 1.21e-19 | 89.4 |
| Msa1041500 | MtrunA17_Chr3g0107891 | 59.722 | 72 | 24 | 2 | 19 | 90 | 2 | 68 | 1.94e-17 | 82.4 |
| Msa1041500 | MtrunA17_Chr3g0132861 | 36.458 | 96 | 59 | 1 | 21 | 114 | 12 | 107 | 2.41e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041500 | AT1G03470.2 | 38.489 | 278 | 115 | 10 | 11 | 274 | 6 | 241 | 4.49e-46 | 157 |
| Msa1041500 | AT1G03470.3 | 38.489 | 278 | 115 | 10 | 11 | 274 | 6 | 241 | 4.49e-46 | 157 |
| Msa1041500 | AT1G03470.1 | 38.489 | 278 | 115 | 10 | 11 | 274 | 6 | 241 | 4.49e-46 | 157 |
| Msa1041500 | AT1G03470.4 | 38.489 | 278 | 115 | 10 | 11 | 274 | 6 | 241 | 4.49e-46 | 157 |
| Msa1041500 | AT2G47920.2 | 34.965 | 286 | 119 | 8 | 4 | 286 | 1 | 222 | 3.30e-39 | 137 |
| Msa1041500 | AT2G47920.1 | 34.965 | 286 | 119 | 8 | 4 | 286 | 1 | 222 | 3.30e-39 | 137 |
| Msa1041500 | AT3G22790.1 | 57.471 | 87 | 33 | 2 | 12 | 98 | 14 | 96 | 1.86e-27 | 113 |
| Msa1041500 | AT3G22790.3 | 57.471 | 87 | 33 | 2 | 12 | 98 | 14 | 96 | 1.86e-27 | 113 |
| Msa1041500 | AT3G22790.2 | 57.471 | 87 | 33 | 2 | 12 | 98 | 14 | 96 | 1.86e-27 | 113 |
| Msa1041500 | AT1G03080.3 | 56.180 | 89 | 35 | 3 | 1 | 88 | 1 | 86 | 1.45e-26 | 110 |
| Msa1041500 | AT1G03080.1 | 56.180 | 89 | 35 | 3 | 1 | 88 | 1 | 86 | 1.45e-26 | 110 |
| Msa1041500 | AT1G03080.2 | 56.180 | 89 | 35 | 3 | 1 | 88 | 1 | 86 | 1.45e-26 | 110 |
| Msa1041500 | AT2G30500.2 | 55.172 | 87 | 36 | 2 | 12 | 98 | 22 | 105 | 5.89e-26 | 107 |
| Msa1041500 | AT2G30500.1 | 55.172 | 87 | 36 | 2 | 12 | 98 | 22 | 105 | 5.89e-26 | 107 |
| Msa1041500 | AT2G30500.3 | 55.172 | 87 | 36 | 2 | 12 | 98 | 21 | 104 | 6.15e-26 | 107 |
| Msa1041500 | AT2G22560.1 | 52.174 | 92 | 41 | 2 | 12 | 103 | 11 | 99 | 4.05e-25 | 105 |
| Msa1041500 | AT4G02710.1 | 47.959 | 98 | 48 | 2 | 1 | 98 | 3 | 97 | 1.45e-24 | 104 |
| Msa1041500 | AT4G14760.4 | 50.000 | 90 | 41 | 2 | 12 | 101 | 14 | 99 | 3.91e-24 | 103 |
| Msa1041500 | AT4G14760.2 | 50.000 | 90 | 41 | 2 | 12 | 101 | 14 | 99 | 3.91e-24 | 103 |
| Msa1041500 | AT4G14760.3 | 50.000 | 90 | 41 | 2 | 12 | 101 | 14 | 99 | 3.91e-24 | 103 |
| Msa1041500 | AT4G14760.1 | 50.000 | 90 | 41 | 2 | 12 | 101 | 14 | 99 | 3.91e-24 | 103 |
| Msa1041500 | AT5G10500.1 | 47.826 | 92 | 45 | 2 | 12 | 103 | 11 | 99 | 8.83e-23 | 99.0 |
| Msa1041500 | AT5G58320.5 | 50.000 | 94 | 38 | 4 | 13 | 106 | 23 | 107 | 2.73e-22 | 97.4 |
| Msa1041500 | AT5G58320.2 | 50.000 | 94 | 38 | 4 | 13 | 106 | 23 | 107 | 2.73e-22 | 97.4 |
| Msa1041500 | AT5G58320.1 | 50.000 | 94 | 38 | 4 | 13 | 106 | 23 | 107 | 3.60e-22 | 97.1 |
| Msa1041500 | AT5G58320.4 | 50.000 | 94 | 38 | 4 | 13 | 106 | 23 | 107 | 3.60e-22 | 97.1 |
| Msa1041500 | AT1G58215.1 | 54.430 | 79 | 33 | 2 | 12 | 90 | 11 | 86 | 8.39e-22 | 96.3 |
| Msa1041500 | AT1G09720.1 | 47.368 | 95 | 46 | 3 | 12 | 105 | 11 | 102 | 8.49e-22 | 96.3 |
| Msa1041500 | AT4G03153.1 | 46.988 | 83 | 40 | 2 | 9 | 88 | 3 | 84 | 9.00e-20 | 86.3 |
| Msa1041500 | AT5G58320.3 | 57.143 | 63 | 21 | 2 | 44 | 106 | 8 | 64 | 1.13e-15 | 77.4 |
Find 67 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTACATTGATGTCATTTA+TGG | 0.101707 | 7_1:-79084498 | Msa1041500:three_prime_UTR |
| CCATTTGAATTCAACAAATT+TGG | 0.121379 | 7_1:-79084860 | Msa1041500:CDS |
| TTGTTTAACATATAGGGTTT+TGG | 0.220526 | 7_1:-79088194 | Msa1041500:intron |
| TTATACATAACTATGCTATT+TGG | 0.267385 | 7_1:+79084753 | None:intergenic |
| GAATACATAAACAGGGTTTA+AGG | 0.272081 | 7_1:+79084553 | None:intergenic |
| CCAAATTTGTTGAATTCAAA+TGG | 0.273883 | 7_1:+79084860 | None:intergenic |
| ACAATTGGAATACATATAAC+TGG | 0.278852 | 7_1:+79084623 | None:intergenic |
| GGAAATGGCCACCTCGTGTT+AGG | 0.300099 | 7_1:-79085379 | Msa1041500:CDS |
| ACAAGAATCAACAATCAAAT+TGG | 0.341635 | 7_1:-79088107 | Msa1041500:CDS |
| TTTATCTTAATTATTATAAT+CGG | 0.360346 | 7_1:-79088366 | Msa1041500:intron |
| TTCAACCATGCTAACAAGTT+CGG | 0.381083 | 7_1:+79085462 | None:intergenic |
| CCTTATGAACCGTGTTCTCT+TGG | 0.381186 | 7_1:+79085110 | None:intergenic |
| TCAACACTGGGCTGATTCCT+TGG | 0.385966 | 7_1:+79084803 | None:intergenic |
| TGGCTTCAATCCACTCTATC+TGG | 0.406922 | 7_1:-79088039 | Msa1041500:intron |
| CTAAAGAGTCCGCAAAGAAA+TGG | 0.414884 | 7_1:-79084889 | Msa1041500:CDS |
| TGGGAACTTCCATTTCTTTG+CGG | 0.421919 | 7_1:+79084880 | None:intergenic |
| TCAACCATGCTAACAAGTTC+GGG | 0.422442 | 7_1:+79085463 | None:intergenic |
| CATATAACTGGGCAAGTAAA+GGG | 0.426992 | 7_1:+79084635 | None:intergenic |
| CAAATTTGTTGAATTCAAAT+GGG | 0.430760 | 7_1:+79084861 | None:intergenic |
| AGGTGGCCATTTCCAGTGTC+GGG | 0.436826 | 7_1:+79085388 | None:intergenic |
| TATGTCAAAATTCTCAGAAT+AGG | 0.439765 | 7_1:+79085285 | None:intergenic |
| GAAATGGCCACCTCGTGTTA+GGG | 0.440854 | 7_1:-79085378 | Msa1041500:CDS |
| CCAAGAGAACACGGTTCATA+AGG | 0.443420 | 7_1:-79085110 | Msa1041500:CDS |
| AAAGGATGAAGAGAAAATAG+AGG | 0.446167 | 7_1:-79084981 | Msa1041500:CDS |
| TTTGAATTCAACAAATTTGG+AGG | 0.468420 | 7_1:-79084857 | Msa1041500:CDS |
| ACATATAACTGGGCAAGTAA+AGG | 0.477315 | 7_1:+79084634 | None:intergenic |
| GTGAAACCCGACACTGGAAA+TGG | 0.478333 | 7_1:-79085394 | Msa1041500:CDS |
| GGGAGAGAATGTGGCACAAA+AGG | 0.479177 | 7_1:-79085017 | Msa1041500:CDS |
| TGATACTTAGCTGAAGCAAA+AGG | 0.492521 | 7_1:+79085349 | None:intergenic |
| ATCTAGTCTTGTTGAAATGA+CGG | 0.495807 | 7_1:-79088420 | Msa1041500:five_prime_UTR |
| AAAGGAAGAGCTCAAGCAAA+AGG | 0.498722 | 7_1:-79084999 | Msa1041500:CDS |
| GATTATTATGAACCGAAAGA+TGG | 0.507548 | 7_1:+79088440 | None:intergenic |
| TCTAGTCTTGTTGAAATGAC+GGG | 0.508167 | 7_1:-79088419 | Msa1041500:five_prime_UTR |
| ATCAACAATCAAATTGGTGG+TGG | 0.550199 | 7_1:-79088101 | Msa1041500:CDS |
| GAGGTGGCCATTTCCAGTGT+CGG | 0.550744 | 7_1:+79085387 | None:intergenic |
| GATAGAGTGGATTGAAGCCA+AGG | 0.551806 | 7_1:+79088042 | None:intergenic |
| AGAATCAACAATCAAATTGG+TGG | 0.553611 | 7_1:-79088104 | Msa1041500:CDS |
| CAATGTCACAGAACAGAACA+AGG | 0.554032 | 7_1:+79088391 | None:intergenic |
| ACAATACTAAACGTTCCCCT+TGG | 0.557820 | 7_1:-79088059 | Msa1041500:CDS |
| GTGATGAAGTAATGAAGTTG+AGG | 0.566510 | 7_1:-79085060 | Msa1041500:CDS |
| AAATGGCCACCTCGTGTTAG+GGG | 0.566620 | 7_1:-79085377 | Msa1041500:CDS |
| GCGACCCGAACTTGTTAGCA+TGG | 0.568348 | 7_1:-79085467 | Msa1041500:CDS |
| AGTGTTGAACTCTCTAGATG+TGG | 0.571608 | 7_1:-79084788 | Msa1041500:CDS |
| AAAACTAAGGGGAGAGAATG+TGG | 0.572522 | 7_1:-79085026 | Msa1041500:CDS |
| TGATGAAGTAATGAAGTTGA+GGG | 0.573233 | 7_1:-79085059 | Msa1041500:CDS |
| CAATTGGAATACATATAACT+GGG | 0.578349 | 7_1:+79084624 | None:intergenic |
| CAAACTATGAATCTAAGACT+AGG | 0.586512 | 7_1:+79084694 | None:intergenic |
| ATGCTCGGGATCATCAACTT+CGG | 0.586706 | 7_1:+79085246 | None:intergenic |
| GATCAAGTGAAACCCGACAC+TGG | 0.592815 | 7_1:-79085400 | Msa1041500:CDS |
| ACATCTAGAGAGTTCAACAC+TGG | 0.598480 | 7_1:+79084790 | None:intergenic |
| GAAAATAAGCCAAGAGAACA+CGG | 0.599830 | 7_1:-79085119 | Msa1041500:CDS |
| ATAATGCATACCAGATAGAG+TGG | 0.603675 | 7_1:+79088029 | None:intergenic |
| AATTGTTCAATGGAAATCCA+AGG | 0.606931 | 7_1:-79084820 | Msa1041500:CDS |
| CTATCGAACACACCGCTCGT+TGG | 0.607247 | 7_1:-79085434 | Msa1041500:CDS |
| AATGGCCACCTCGTGTTAGG+GGG | 0.618948 | 7_1:-79085376 | Msa1041500:CDS |
| CACACCGCTCGTTGGCCGAG+CGG | 0.633513 | 7_1:-79085426 | Msa1041500:CDS |
| ATAGAGTGGATTGAAGCCAA+GGG | 0.641627 | 7_1:+79088043 | None:intergenic |
| CATACCGCTCGGCCAACGAG+CGG | 0.650245 | 7_1:+79085422 | None:intergenic |
| AGAAGAGCGAGTTTCGTCTG+TGG | 0.651278 | 7_1:-79085182 | Msa1041500:CDS |
| TTTCACTTGATCATACCGCT+CGG | 0.662652 | 7_1:+79085411 | None:intergenic |
| TACATAAACAGGGTTTAAGG+TGG | 0.663526 | 7_1:+79084556 | None:intergenic |
| CATCTAGAGAGTTCAACACT+GGG | 0.664020 | 7_1:+79084791 | None:intergenic |
| TTTGAAAGAATACATAAACA+GGG | 0.664101 | 7_1:+79084546 | None:intergenic |
| CTGTCAACGACGAAGTGATG+AGG | 0.676143 | 7_1:-79085159 | Msa1041500:CDS |
| GCATGTAACATACATAAACA+AGG | 0.694442 | 7_1:+79084518 | None:intergenic |
| TAGAGTGGATTGAAGCCAAG+GGG | 0.710125 | 7_1:+79088044 | None:intergenic |
| AATGTCACAGAACAGAACAA+GGG | 0.746268 | 7_1:+79088392 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATTATAAAATTTATTT+TGG | - | chr7_1:79087115-79087134 | Msa1041500:intron | 0.0% |
| !! | ACAAAAAAAAAAAAAATAAG+TGG | + | chr7_1:79086112-79086131 | None:intergenic | 10.0% |
| !!! | ATCATAAAATTGATTTATTT+TGG | + | chr7_1:79087240-79087259 | None:intergenic | 10.0% |
| !! | AATTAAAAAATTGTAACAAT+TGG | + | chr7_1:79088357-79088376 | None:intergenic | 10.0% |
| !!! | TTTTTGTTGTTTAACATATA+GGG | - | chr7_1:79084762-79084781 | Msa1041500:exon | 15.0% |
| !!! | TTTATTTTGATAACTACTAA+CGG | + | chr7_1:79085224-79085243 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAATAAGTGGT+GGG | + | chr7_1:79086108-79086127 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAATAAGTGG+TGG | + | chr7_1:79086109-79086128 | None:intergenic | 15.0% |
| !! | CAAATGAAAAAAGTTATAAA+TGG | - | chr7_1:79086153-79086172 | Msa1041500:intron | 15.0% |
| !!! | TTTTATTACTTTTTAAACGT+GGG | + | chr7_1:79086444-79086463 | None:intergenic | 15.0% |
| !!! | ATTTTATTACTTTTTAAACG+TGG | + | chr7_1:79086445-79086464 | None:intergenic | 15.0% |
| !!! | TTTAATAAAAGTACCTATTA+AGG | + | chr7_1:79086685-79086704 | None:intergenic | 15.0% |
| !!! | TTTTTCCATTTGTTATAATT+TGG | - | chr7_1:79086857-79086876 | Msa1041500:intron | 15.0% |
| !! | ATTGACAAAAAAAAAAAAAG+TGG | + | chr7_1:79086941-79086960 | None:intergenic | 15.0% |
| !! | ATGGAAATAAAAAGAAGAAA+GGG | + | chr7_1:79084506-79084525 | None:intergenic | 20.0% |
| !!! | TTCTTTTTATTTCCATCTTT+CGG | - | chr7_1:79084510-79084529 | Msa1041500:three_prime_UTR | 20.0% |
| !!! | CTTTTTGTTGTTTAACATAT+AGG | - | chr7_1:79084761-79084780 | Msa1041500:exon | 20.0% |
| !! | GTAGTTATCAAAATAAACTT+AGG | - | chr7_1:79085227-79085246 | Msa1041500:CDS | 20.0% |
| !! | TTATCAAAATAAACTTAGGT+AGG | - | chr7_1:79085231-79085250 | Msa1041500:CDS | 20.0% |
| !!! | AATTATTGTGTTGATAGAAA+AGG | - | chr7_1:79085455-79085474 | Msa1041500:CDS | 20.0% |
| !!! | AAATAATGTGTTGATACAAA+AGG | - | chr7_1:79085493-79085512 | Msa1041500:CDS | 20.0% |
| !! | CAAATTATAACAAATGGAAA+AGG | + | chr7_1:79086030-79086049 | None:intergenic | 20.0% |
| !!! | CTTTTCCATTTGTTATAATT+TGG | - | chr7_1:79086028-79086047 | Msa1041500:intron | 20.0% |
| !! | GACACATAAAAAAATAATGA+TGG | - | chr7_1:79086060-79086079 | Msa1041500:intron | 20.0% |
| !! | ACATAAAAAAATAATGATGG+TGG | - | chr7_1:79086063-79086082 | Msa1041500:intron | 20.0% |
| !! | CATAAAAAAATAATGATGGT+GGG | - | chr7_1:79086064-79086083 | Msa1041500:intron | 20.0% |
| !! | ATAATTGCAAGATTATTTCA+AGG | + | chr7_1:79086212-79086231 | None:intergenic | 20.0% |
| !! | TTTATAAAATCAATTGTTGC+TGG | + | chr7_1:79085874-79085893 | None:intergenic | 20.0% |
| !! | GTAATAAAATATGTACTACT+TGG | - | chr7_1:79086496-79086515 | Msa1041500:intron | 20.0% |
| !! | TATTAATTCTTTATGCAAGT+GGG | + | chr7_1:79086523-79086542 | None:intergenic | 20.0% |
| !! | TTATTAATTCTTTATGCAAG+TGG | + | chr7_1:79086524-79086543 | None:intergenic | 20.0% |
| !! | TTAATAAAATGTGTACTACT+TGG | - | chr7_1:79086537-79086556 | Msa1041500:intron | 20.0% |
| !!! | TATTACTCATTTTTACAAGT+GGG | + | chr7_1:79086564-79086583 | None:intergenic | 20.0% |
| !! | TGTTTAATATGTAAAGATAG+TGG | - | chr7_1:79086597-79086616 | Msa1041500:intron | 20.0% |
| !! | GTTTAATATGTAAAGATAGT+GGG | - | chr7_1:79086598-79086617 | Msa1041500:intron | 20.0% |
| !!! | CATATTTAAGTACTTTTCAT+TGG | - | chr7_1:79086622-79086641 | Msa1041500:intron | 20.0% |
| !! | CAAATGGAAAAAGTTATAAA+TGG | + | chr7_1:79086978-79086997 | None:intergenic | 20.0% |
| !! | GACACATAAAAAAATAATGA+TGG | - | chr7_1:79086060-79086079 | Msa1041500:intron | 20.0% |
| !! | ACATAAAAAAATAATGATGG+TGG | - | chr7_1:79086063-79086082 | Msa1041500:intron | 20.0% |
| !! | CATAAAAAAATAATGATGGT+GGG | - | chr7_1:79086064-79086083 | Msa1041500:intron | 20.0% |
| !! | ACAAAAAAAAAAAAAGTGGT+GGG | + | chr7_1:79086937-79086956 | None:intergenic | 20.0% |
| !! | CAAATGGAAAAAGTTATAAA+TGG | - | chr7_1:79086978-79086997 | Msa1041500:intron | 20.0% |
| !! | ATAATTGCAAGATTATTTCA+AGG | + | chr7_1:79086212-79086231 | None:intergenic | 20.0% |
| !! | GTGTAAAAAAAATTACATTG+AGG | + | chr7_1:79087067-79087086 | None:intergenic | 20.0% |
| !! | TTAAGTTAAAATTCACTTTG+TGG | - | chr7_1:79087171-79087190 | Msa1041500:intron | 20.0% |
| !!! | CAAATTTGTTGAATTCAAAT+GGG | + | chr7_1:79088104-79088123 | None:intergenic | 20.0% |
| !!! | TTTTCTATGAAATTGTTCAA+TGG | - | chr7_1:79088132-79088151 | Msa1041500:exon | 20.0% |
| !! | TTATACATAACTATGCTATT+TGG | + | chr7_1:79088212-79088231 | None:intergenic | 20.0% |
| !!! | TTTTTAATTCTTTATGCATG+TGG | - | chr7_1:79088368-79088387 | Msa1041500:five_prime_UTR | 20.0% |
| !! | TTTGAAAGAATACATAAACA+GGG | + | chr7_1:79088419-79088438 | None:intergenic | 20.0% |
| !!! | TTTTGAAAGAATACATAAAC+AGG | + | chr7_1:79088420-79088439 | None:intergenic | 20.0% |
| ! | GATGGAAATAAAAAGAAGAA+AGG | + | chr7_1:79084507-79084526 | None:intergenic | 25.0% |
| !! | TTGTTTAACATATAGGGTTT+TGG | - | chr7_1:79084768-79084787 | Msa1041500:CDS | 25.0% |
| !! | TGTTTAACATATAGGGTTTT+GGG | - | chr7_1:79084769-79084788 | Msa1041500:CDS | 25.0% |
| ! | ACAAGAATCAACAATCAAAT+TGG | - | chr7_1:79084855-79084874 | Msa1041500:CDS | 25.0% |
| !!! | AAATTGTTTTTCATGCCTTT+GGG | - | chr7_1:79085035-79085054 | Msa1041500:CDS | 25.0% |
| ! | TAAAAATGCAAAGACAGATA+CGG | + | chr7_1:79085175-79085194 | None:intergenic | 25.0% |
| ! | TATTAAGAGAGTAGATTAGA+TGG | - | chr7_1:79085265-79085284 | Msa1041500:CDS | 25.0% |
| !! | CAACTTTTATTCCACTAATT+GGG | + | chr7_1:79085407-79085426 | None:intergenic | 25.0% |
| !!! | TGACTAAGTGTTATTTGTTA+CGG | + | chr7_1:79085939-79085958 | None:intergenic | 25.0% |
| ! | CAAATGGAAAAGGTTATAAA+TGG | + | chr7_1:79086020-79086039 | None:intergenic | 25.0% |
| ! | TCTCTCCAAATTATAACAAA+TGG | + | chr7_1:79086036-79086055 | None:intergenic | 25.0% |
| ! | GAAAAAAGTTATAAATGGAG+AGG | - | chr7_1:79086158-79086177 | Msa1041500:intron | 25.0% |
| !! | GGTTTAACTTTAATCATAAC+AGG | + | chr7_1:79086191-79086210 | None:intergenic | 25.0% |
| ! | GTAATAAAATGTGTACTACT+TGG | - | chr7_1:79086455-79086474 | Msa1041500:intron | 25.0% |
| ! | TATTACTTCTTTATGCAAGT+GGG | + | chr7_1:79086482-79086501 | None:intergenic | 25.0% |
| ! | TTATTACTTCTTTATGCAAG+TGG | + | chr7_1:79086483-79086502 | None:intergenic | 25.0% |
| !!! | CTATTACTCATTTTTACAAG+TGG | + | chr7_1:79086565-79086584 | None:intergenic | 25.0% |
| ! | TCTCTCCAAATTATAACAAA+TGG | + | chr7_1:79086036-79086055 | None:intergenic | 25.0% |
| ! | GACAAAAAAAAAAAAAGTGG+TGG | + | chr7_1:79086938-79086957 | None:intergenic | 25.0% |
| !! | GGTTTAACTTTAATCATAAC+AGG | + | chr7_1:79086191-79086210 | None:intergenic | 25.0% |
| ! | AACATGCACTTGTATATATT+TGG | - | chr7_1:79087294-79087313 | Msa1041500:intron | 25.0% |
| ! | TATGTCAAAATTCTCAGAAT+AGG | + | chr7_1:79087680-79087699 | None:intergenic | 25.0% |
| ! | GGAAGAAATAGAAAAACTAA+GGG | - | chr7_1:79087924-79087943 | Msa1041500:intron | 25.0% |
| ! | GAAGAAATAGAAAAACTAAG+GGG | - | chr7_1:79087925-79087944 | Msa1041500:intron | 25.0% |
| !!! | CCAAATTTGTTGAATTCAAA+TGG | + | chr7_1:79088105-79088124 | None:intergenic | 25.0% |
| ! | CCATTTGAATTCAACAAATT+TGG | - | chr7_1:79088102-79088121 | Msa1041500:CDS | 25.0% |
| ! | TTTGAATTCAACAAATTTGG+AGG | - | chr7_1:79088105-79088124 | Msa1041500:CDS | 25.0% |
| ! | CAATTGGAATACATATAACT+GGG | + | chr7_1:79088341-79088360 | None:intergenic | 25.0% |
| ! | ACAATTGGAATACATATAAC+TGG | + | chr7_1:79088342-79088361 | None:intergenic | 25.0% |
| GATTATTATGAACCGAAAGA+TGG | + | chr7_1:79084525-79084544 | None:intergenic | 30.0% | |
| !! | ATCTAGTCTTGTTGAAATGA+CGG | - | chr7_1:79084542-79084561 | Msa1041500:three_prime_UTR | 30.0% |
| TTGTAACGACAAGATAAGAT+TGG | + | chr7_1:79084689-79084708 | None:intergenic | 30.0% | |
| ! | GTTTAACATATAGGGTTTTG+GGG | - | chr7_1:79084770-79084789 | Msa1041500:CDS | 30.0% |
| !!! | TTCGTCACTATTTTTTTGCT+TGG | + | chr7_1:79084800-79084819 | None:intergenic | 30.0% |
| GAAGAAGAAGAAGAAAAAGA+TGG | - | chr7_1:79084820-79084839 | Msa1041500:CDS | 30.0% | |
| AGAATCAACAATCAAATTGG+TGG | - | chr7_1:79084858-79084877 | Msa1041500:CDS | 30.0% | |
| CAACGATGCTTTAATAATTC+AGG | - | chr7_1:79085012-79085031 | Msa1041500:CDS | 30.0% | |
| !! | GAAATTGTTTTTCATGCCTT+TGG | - | chr7_1:79085034-79085053 | Msa1041500:CDS | 30.0% |
| !! | ACTACTAACGGATCTATTTT+GGG | + | chr7_1:79085212-79085231 | None:intergenic | 30.0% |
| !! | AACTACTAACGGATCTATTT+TGG | + | chr7_1:79085213-79085232 | None:intergenic | 30.0% |
| TCAAAATAAACTTAGGTAGG+TGG | - | chr7_1:79085234-79085253 | Msa1041500:CDS | 30.0% | |
| ! | CCAACTTTTATTCCACTAAT+TGG | + | chr7_1:79085408-79085427 | None:intergenic | 30.0% |
| CCAATTAGTGGAATAAAAGT+TGG | - | chr7_1:79085405-79085424 | Msa1041500:CDS | 30.0% | |
| ! | TATTGTGTTGATAGAAAAGG+AGG | - | chr7_1:79085458-79085477 | Msa1041500:CDS | 30.0% |
| TGTTGATACAAAAGGTCAAA+AGG | - | chr7_1:79085501-79085520 | Msa1041500:CDS | 30.0% | |
| AACAGTCAAACAAATCACAA+CGG | + | chr7_1:79085537-79085556 | None:intergenic | 30.0% | |
| AAATGCATAAGACAAAAGGT+GGG | + | chr7_1:79085582-79085601 | None:intergenic | 30.0% | |
| TAAATGCATAAGACAAAAGG+TGG | + | chr7_1:79085583-79085602 | None:intergenic | 30.0% | |
| GTCTTTGTATGCAAAAGTTT+AGG | - | chr7_1:79085640-79085659 | Msa1041500:intron | 30.0% | |
| TTTGTATGCAAAAGTTTAGG+TGG | - | chr7_1:79085643-79085662 | Msa1041500:intron | 30.0% | |
| TTGTATGCAAAAGTTTAGGT+GGG | - | chr7_1:79085644-79085663 | Msa1041500:intron | 30.0% | |
| AAAATCAATTGTTGCTAGCT+AGG | + | chr7_1:79085869-79085888 | None:intergenic | 30.0% | |
| !! | GCTCTAAGTGTTATTTGTTA+CGG | + | chr7_1:79086330-79086349 | None:intergenic | 30.0% |
| CCAATGACAATACACTAATA+AGG | + | chr7_1:79086651-79086670 | None:intergenic | 30.0% | |
| CCTTATTAGTGTATTGTCAT+TGG | - | chr7_1:79086648-79086667 | Msa1041500:intron | 30.0% | |
| TCTCTCTAAATTGCAACAAA+TGG | - | chr7_1:79086137-79086156 | Msa1041500:intron | 30.0% | |
| GGAAAAAGTTATAAATGGAG+AGG | - | chr7_1:79086983-79087002 | Msa1041500:intron | 30.0% | |
| !!! | TTGGCACATTTTTGAGTATT+CGG | + | chr7_1:79087221-79087240 | None:intergenic | 30.0% |
| GAATACACTTCTGATAGTAA+AGG | + | chr7_1:79087273-79087292 | None:intergenic | 30.0% | |
| TGGCACAAATAAAAAGATTC+TGG | + | chr7_1:79087324-79087343 | None:intergenic | 30.0% | |
| TGATGAAGTAATGAAGTTGA+GGG | - | chr7_1:79087903-79087922 | Msa1041500:intron | 30.0% | |
| GGGAAGAAATAGAAAAACTA+AGG | - | chr7_1:79087923-79087942 | Msa1041500:intron | 30.0% | |
| AAAGGATGAAGAGAAAATAG+AGG | - | chr7_1:79087981-79088000 | Msa1041500:intron | 30.0% | |
| AATTGTTCAATGGAAATCCA+AGG | - | chr7_1:79088142-79088161 | Msa1041500:exon | 30.0% | |
| ! | CAAACTATGAATCTAAGACT+AGG | + | chr7_1:79088271-79088290 | None:intergenic | 30.0% |
| GAATACATAAACAGGGTTTA+AGG | + | chr7_1:79088412-79088431 | None:intergenic | 30.0% | |
| GCATGTAACATACATAAACA+AGG | + | chr7_1:79088447-79088466 | None:intergenic | 30.0% | |
| ! | TGCTACATTGATGTCATTTA+TGG | - | chr7_1:79088464-79088483 | Msa1041500:five_prime_UTR | 30.0% |
| !! | TCTAGTCTTGTTGAAATGAC+GGG | - | chr7_1:79084543-79084562 | Msa1041500:three_prime_UTR | 35.0% |
| AATGTCACAGAACAGAACAA+GGG | + | chr7_1:79084573-79084592 | None:intergenic | 35.0% | |
| AAGAAGAAGAAAAAGATGGC+TGG | - | chr7_1:79084824-79084843 | Msa1041500:CDS | 35.0% | |
| ATCAACAATCAAATTGGTGG+TGG | - | chr7_1:79084861-79084880 | Msa1041500:CDS | 35.0% | |
| ATAATGCATACCAGATAGAG+TGG | + | chr7_1:79084936-79084955 | None:intergenic | 35.0% | |
| AAACAAACGTTCACGCATTT+GGG | + | chr7_1:79085135-79085154 | None:intergenic | 35.0% | |
| !! | TACTAACGGATCTATTTTGG+GGG | + | chr7_1:79085210-79085229 | None:intergenic | 35.0% |
| !! | CTACTAACGGATCTATTTTG+GGG | + | chr7_1:79085211-79085230 | None:intergenic | 35.0% |
| TAAGAGAGTAGATTAGATGG+AGG | - | chr7_1:79085268-79085287 | Msa1041500:CDS | 35.0% | |
| ATGTAGTCAATCCCAATTAG+TGG | - | chr7_1:79085393-79085412 | Msa1041500:CDS | 35.0% | |
| ACAAAAGGTCAAAAGGTTGT+AGG | - | chr7_1:79085508-79085527 | Msa1041500:CDS | 35.0% | |
| GGCTAAATGCATAAGACAAA+AGG | + | chr7_1:79085586-79085605 | None:intergenic | 35.0% | |
| !! | AACCAAATAAAGGTGTCCAA+CGG | + | chr7_1:79085607-79085626 | None:intergenic | 35.0% |
| CTATAAATACCCTTTAGACC+CGG | + | chr7_1:79085706-79085725 | None:intergenic | 35.0% | |
| !! | GGTCTAAAGGGTATTTATAG+AGG | - | chr7_1:79085706-79085725 | Msa1041500:intron | 35.0% |
| ! | ACGGTGTAGAACTTTTTACA+CGG | + | chr7_1:79085920-79085939 | None:intergenic | 35.0% |
| ! | AAAATCAATTGTTGCTGGCT+AGG | + | chr7_1:79086260-79086279 | None:intergenic | 35.0% |
| ! | ACGGTGTAGAACTTTTTACA+CGG | + | chr7_1:79085920-79085939 | None:intergenic | 35.0% |
| TATAGTTGTCCGTTCCTTAA+CGG | + | chr7_1:79086387-79086406 | None:intergenic | 35.0% | |
| AAGGAACGGACAACTATATA+AGG | - | chr7_1:79086389-79086408 | Msa1041500:intron | 35.0% | |
| TTAGTTACTTAGGAGAGAGA+GGG | + | chr7_1:79086416-79086435 | None:intergenic | 35.0% | |
| TCTCTCTCCTAAGTAACTAA+CGG | - | chr7_1:79086416-79086435 | Msa1041500:intron | 35.0% | |
| TAAATAAGTGATGTGTCACG+TGG | - | chr7_1:79086711-79086730 | Msa1041500:intron | 35.0% | |
| AAATAAGTGATGTGTCACGT+GGG | - | chr7_1:79086712-79086731 | Msa1041500:intron | 35.0% | |
| CATTTAAGGAGTCCTTGTTA+GGG | - | chr7_1:79086738-79086757 | Msa1041500:intron | 35.0% | |
| !!! | TGGCACATTTTTGAGTATTC+GGG | + | chr7_1:79087220-79087239 | None:intergenic | 35.0% |
| GCCACATGAAAGTTGTATTA+CGG | - | chr7_1:79087340-79087359 | Msa1041500:intron | 35.0% | |
| TCCGTAATACAACTTTCATG+TGG | + | chr7_1:79087344-79087363 | None:intergenic | 35.0% | |
| TTCAACCATGCTAACAAGTT+CGG | + | chr7_1:79087503-79087522 | None:intergenic | 35.0% | |
| TGATACTTAGCTGAAGCAAA+AGG | + | chr7_1:79087616-79087635 | None:intergenic | 35.0% | |
| ! | TTTTGACATAGACGAGTCTA+TGG | - | chr7_1:79087690-79087709 | Msa1041500:intron | 35.0% |
| GAAAATAAGCCAAGAGAACA+CGG | - | chr7_1:79087843-79087862 | Msa1041500:intron | 35.0% | |
| GTGATGAAGTAATGAAGTTG+AGG | - | chr7_1:79087902-79087921 | Msa1041500:intron | 35.0% | |
| CATATAACTGGGCAAGTAAA+GGG | + | chr7_1:79088330-79088349 | None:intergenic | 35.0% | |
| ACATATAACTGGGCAAGTAA+AGG | + | chr7_1:79088331-79088350 | None:intergenic | 35.0% | |
| TACATAAACAGGGTTTAAGG+TGG | + | chr7_1:79088409-79088428 | None:intergenic | 35.0% | |
| CAATGTCACAGAACAGAACA+AGG | + | chr7_1:79084574-79084593 | None:intergenic | 40.0% | |
| ACAATACTAAACGTTCCCCT+TGG | - | chr7_1:79084903-79084922 | Msa1041500:CDS | 40.0% | |
| !! | ATAGAGTGGATTGAAGCCAA+GGG | + | chr7_1:79084922-79084941 | None:intergenic | 40.0% |
| GAAACAAACGTTCACGCATT+TGG | + | chr7_1:79085136-79085155 | None:intergenic | 40.0% | |
| TGATAGAAAAGGAGGAATGC+TGG | - | chr7_1:79085466-79085485 | Msa1041500:CDS | 40.0% | |
| TGTCTTATGCATTTAGCCGT+TGG | - | chr7_1:79085588-79085607 | Msa1041500:intron | 40.0% | |
| GTCACGCTGAAACCAAATAA+AGG | + | chr7_1:79085617-79085636 | None:intergenic | 40.0% | |
| ! | TGCAAAAGTTTAGGTGGGTT+CGG | - | chr7_1:79085649-79085668 | Msa1041500:intron | 40.0% |
| !! | TTGACTCAGTTGGTAAGGAA+CGG | + | chr7_1:79085810-79085829 | None:intergenic | 40.0% |
| ! | GTGTAGAACTTTTTACACGG+AGG | + | chr7_1:79085917-79085936 | None:intergenic | 40.0% |
| ! | GTGTAGAACTTTTTACACGG+AGG | + | chr7_1:79085917-79085936 | None:intergenic | 40.0% |
| ! | AACACTTAGAGCATCTCCAA+TGG | - | chr7_1:79086338-79086357 | Msa1041500:intron | 40.0% |
| ! | ACACTTAGAGCATCTCCAAT+GGG | - | chr7_1:79086339-79086358 | Msa1041500:intron | 40.0% |
| ATAGTTGTCCGTTCCTTAAC+GGG | + | chr7_1:79086386-79086405 | None:intergenic | 40.0% | |
| GTTAGTTACTTAGGAGAGAG+AGG | + | chr7_1:79086417-79086436 | None:intergenic | 40.0% | |
| CTCTCTCCTAAGTAACTAAC+GGG | - | chr7_1:79086417-79086436 | Msa1041500:intron | 40.0% | |
| GGAGTCATTGAGTCCTTAAT+AGG | - | chr7_1:79086669-79086688 | Msa1041500:intron | 40.0% | |
| CCTAACAAGGACTCCTTAAA+TGG | + | chr7_1:79086740-79086759 | None:intergenic | 40.0% | |
| CCATTTAAGGAGTCCTTGTT+AGG | - | chr7_1:79086737-79086756 | Msa1041500:intron | 40.0% | |
| ACAATGGTAGTTCCCTAACA+AGG | + | chr7_1:79086753-79086772 | None:intergenic | 40.0% | |
| TTGTTAGGGAACTACCATTG+TGG | - | chr7_1:79086752-79086771 | Msa1041500:intron | 40.0% | |
| !! | ATGACTAAGAGCATCCACAA+TGG | + | chr7_1:79086769-79086788 | None:intergenic | 40.0% |
| GTTCAGCTCTGCAATAAACA+TGG | + | chr7_1:79087395-79087414 | None:intergenic | 40.0% | |
| TCAACCATGCTAACAAGTTC+GGG | + | chr7_1:79087502-79087521 | None:intergenic | 40.0% | |
| TTTCACTTGATCATACCGCT+CGG | + | chr7_1:79087554-79087573 | None:intergenic | 40.0% | |
| ! | TTGATGAGTTTTGCAGACAC+TGG | - | chr7_1:79087646-79087665 | Msa1041500:intron | 40.0% |
| ! | ACCTCTTTTTCTTCATGCTC+GGG | + | chr7_1:79087733-79087752 | None:intergenic | 40.0% |
| ! | CACCTCTTTTTCTTCATGCT+CGG | + | chr7_1:79087734-79087753 | None:intergenic | 40.0% |
| AAAACTAAGGGGAGAGAATG+TGG | - | chr7_1:79087936-79087955 | Msa1041500:intron | 40.0% | |
| AAAGGAAGAGCTCAAGCAAA+AGG | - | chr7_1:79087963-79087982 | Msa1041500:intron | 40.0% | |
| CTAAAGAGTCCGCAAAGAAA+TGG | - | chr7_1:79088073-79088092 | Msa1041500:CDS | 40.0% | |
| TGGGAACTTCCATTTCTTTG+CGG | + | chr7_1:79088085-79088104 | None:intergenic | 40.0% | |
| CATCTAGAGAGTTCAACACT+GGG | + | chr7_1:79088174-79088193 | None:intergenic | 40.0% | |
| ACATCTAGAGAGTTCAACAC+TGG | + | chr7_1:79088175-79088194 | None:intergenic | 40.0% | |
| ! | AGTGTTGAACTCTCTAGATG+TGG | - | chr7_1:79088174-79088193 | Msa1041500:five_prime_UTR | 40.0% |
| !! | GCGTGCGTTTTGTTACTTGA+CGG | - | chr7_1:79084620-79084639 | Msa1041500:three_prime_UTR | 45.0% |
| !! | TAGAGTGGATTGAAGCCAAG+GGG | + | chr7_1:79084921-79084940 | None:intergenic | 45.0% |
| !! | GATAGAGTGGATTGAAGCCA+AGG | + | chr7_1:79084923-79084942 | None:intergenic | 45.0% |
| TGGCTTCAATCCACTCTATC+TGG | - | chr7_1:79084923-79084942 | Msa1041500:CDS | 45.0% | |
| !! | TCATGCCTTTGGGACATTGA+TGG | - | chr7_1:79085045-79085064 | Msa1041500:CDS | 45.0% |
| ACCAACCATCAATGTCCCAA+AGG | + | chr7_1:79085053-79085072 | None:intergenic | 45.0% | |
| AGATACGGATTCTCTCTGCT+CGG | + | chr7_1:79085160-79085179 | None:intergenic | 45.0% | |
| AGCCGTTGGACACCTTTATT+TGG | - | chr7_1:79085602-79085621 | Msa1041500:intron | 45.0% | |
| TAAATACCCTTTAGACCCGG+AGG | + | chr7_1:79085703-79085722 | None:intergenic | 45.0% | |
| !! | ACACGTTGACTCAGTTGGTA+AGG | + | chr7_1:79085815-79085834 | None:intergenic | 45.0% |
| ! | CACTTAGAGCATCTCCAATG+GGG | - | chr7_1:79086340-79086359 | Msa1041500:intron | 45.0% |
| ! | ACTTAGAGCATCTCCAATGG+GGG | - | chr7_1:79086341-79086360 | Msa1041500:intron | 45.0% |
| AACGGGGTCCTTGTTAAGTA+AGG | + | chr7_1:79086369-79086388 | None:intergenic | 45.0% | |
| ACTTAACAAGGACCCCGTTA+AGG | - | chr7_1:79086370-79086389 | Msa1041500:intron | 45.0% | |
| TAGTTGTCCGTTCCTTAACG+GGG | + | chr7_1:79086385-79086404 | None:intergenic | 45.0% | |
| TGTCACGTGGGATCCATTTA+AGG | - | chr7_1:79086724-79086743 | Msa1041500:intron | 45.0% | |
| ! | CATCTCTGCACGTTTTGCAA+AGG | + | chr7_1:79087464-79087483 | None:intergenic | 45.0% |
| ATGCTCGGGATCATCAACTT+CGG | + | chr7_1:79087719-79087738 | None:intergenic | 45.0% | |
| TCCCGAGCATGAAGAAAAAG+AGG | - | chr7_1:79087729-79087748 | Msa1041500:intron | 45.0% | |
| CGAGCATGAAGAAAAAGAGG+TGG | - | chr7_1:79087732-79087751 | Msa1041500:intron | 45.0% | |
| CCTTATGAACCGTGTTCTCT+TGG | + | chr7_1:79087855-79087874 | None:intergenic | 45.0% | |
| CCAAGAGAACACGGTTCATA+AGG | - | chr7_1:79087852-79087871 | Msa1041500:intron | 45.0% | |
| !! | TTTATCTTAATTATTATAAT+CGG | - | chr7_1:79084596-79084615 | Msa1041500:three_prime_UTR | 5.0% |
| !! | GCCTTTGGGACATTGATGGT+TGG | - | chr7_1:79085049-79085068 | Msa1041500:CDS | 50.0% |
| ATACGGATTCTCTCTGCTCG+GGG | + | chr7_1:79085158-79085177 | None:intergenic | 50.0% | |
| GATACGGATTCTCTCTGCTC+GGG | + | chr7_1:79085159-79085178 | None:intergenic | 50.0% | |
| !! | GATGTGAGGACAGTGTTGGT+GGG | + | chr7_1:79085745-79085764 | None:intergenic | 50.0% |
| CACCAACACTGTCCTCACAT+CGG | - | chr7_1:79085744-79085763 | Msa1041500:intron | 50.0% | |
| CGAACACACAACCTTCTGCA+AGG | - | chr7_1:79085777-79085796 | Msa1041500:intron | 50.0% | |
| CACAACCTTCTGCAAGGAAG+TGG | - | chr7_1:79085783-79085802 | Msa1041500:intron | 50.0% | |
| !! | CCAACACACGTTGACTCAGT+TGG | + | chr7_1:79085820-79085839 | None:intergenic | 50.0% |
| CCAACTGAGTCAACGTGTGT+TGG | - | chr7_1:79085817-79085836 | Msa1041500:intron | 50.0% | |
| GGTGGGATCCACTTAGTGAT+AGG | - | chr7_1:79086081-79086100 | Msa1041500:intron | 50.0% | |
| ! | TGGTGGGTCCTATCACTAAG+TGG | + | chr7_1:79086092-79086111 | None:intergenic | 50.0% |
| ! | CTTAGAGCATCTCCAATGGG+GGG | - | chr7_1:79086342-79086361 | Msa1041500:intron | 50.0% |
| GTTAAGTAAGGACCCCCCAT+TGG | + | chr7_1:79086357-79086376 | None:intergenic | 50.0% | |
| TGGGGGGTCCTTACTTAACA+AGG | - | chr7_1:79086358-79086377 | Msa1041500:intron | 50.0% | |
| ACAAGGACCCCGTTAAGGAA+CGG | - | chr7_1:79086375-79086394 | Msa1041500:intron | 50.0% | |
| GTGGGACCCGTTAGTTACTT+AGG | + | chr7_1:79086426-79086445 | None:intergenic | 50.0% | |
| GGTGGGATCCACTTAGTGAT+AGG | - | chr7_1:79086081-79086100 | Msa1041500:intron | 50.0% | |
| ! | TGGTGGGTCCTATCACTAAG+TGG | + | chr7_1:79086092-79086111 | None:intergenic | 50.0% |
| GATCAAGTGAAACCCGACAC+TGG | - | chr7_1:79087562-79087581 | Msa1041500:intron | 50.0% | |
| GTGAAACCCGACACTGGAAA+TGG | - | chr7_1:79087568-79087587 | Msa1041500:intron | 50.0% | |
| GAAATGGCCACCTCGTGTTA+GGG | - | chr7_1:79087584-79087603 | Msa1041500:intron | 50.0% | |
| AAATGGCCACCTCGTGTTAG+GGG | - | chr7_1:79087585-79087604 | Msa1041500:intron | 50.0% | |
| AGAAGAGCGAGTTTCGTCTG+TGG | - | chr7_1:79087780-79087799 | Msa1041500:intron | 50.0% | |
| CTGTCAACGACGAAGTGATG+AGG | - | chr7_1:79087803-79087822 | Msa1041500:intron | 50.0% | |
| GGGAGAGAATGTGGCACAAA+AGG | - | chr7_1:79087945-79087964 | Msa1041500:intron | 50.0% | |
| ! | TCAACACTGGGCTGATTCCT+TGG | + | chr7_1:79088162-79088181 | None:intergenic | 50.0% |
| ! | AGTTTAGGTGGGTTCGGCTC+CGG | - | chr7_1:79085655-79085674 | Msa1041500:intron | 55.0% |
| TCCGGTCACCATCAGGGTTA+GGG | - | chr7_1:79085673-79085692 | Msa1041500:intron | 55.0% | |
| ! | CGATGTGAGGACAGTGTTGG+TGG | + | chr7_1:79085746-79085765 | None:intergenic | 55.0% |
| TGCCGATGTGAGGACAGTGT+TGG | + | chr7_1:79085749-79085768 | None:intergenic | 55.0% | |
| ACTGTCCTCACATCGGCAGA+GGG | - | chr7_1:79085751-79085770 | Msa1041500:intron | 55.0% | |
| ACGGACCACTTCCTTGCAGA+AGG | + | chr7_1:79085791-79085810 | None:intergenic | 55.0% | |
| !! | GCGACCCGAACTTGTTAGCA+TGG | - | chr7_1:79087495-79087514 | Msa1041500:intron | 55.0% |
| CTATCGAACACACCGCTCGT+TGG | - | chr7_1:79087528-79087547 | Msa1041500:intron | 55.0% | |
| AGGTGGCCATTTCCAGTGTC+GGG | + | chr7_1:79087577-79087596 | None:intergenic | 55.0% | |
| GAGGTGGCCATTTCCAGTGT+CGG | + | chr7_1:79087578-79087597 | None:intergenic | 55.0% | |
| GGAAATGGCCACCTCGTGTT+AGG | - | chr7_1:79087583-79087602 | Msa1041500:intron | 55.0% | |
| AATGGCCACCTCGTGTTAGG+GGG | - | chr7_1:79087586-79087605 | Msa1041500:intron | 55.0% | |
| TTCGGCTCCGGTCACCATCA+GGG | - | chr7_1:79085667-79085686 | Msa1041500:intron | 60.0% | |
| CTCCGGTCACCATCAGGGTT+AGG | - | chr7_1:79085672-79085691 | Msa1041500:intron | 60.0% | |
| ! | GCCCTAACCCTGATGGTGAC+CGG | + | chr7_1:79085677-79085696 | None:intergenic | 60.0% |
| CACTGTCCTCACATCGGCAG+AGG | - | chr7_1:79085750-79085769 | Msa1041500:intron | 60.0% | |
| CGATTCCCTCTGCCGATGTG+AGG | + | chr7_1:79085759-79085778 | None:intergenic | 60.0% | |
| AAGGCGATCCCCCTAACACG+AGG | + | chr7_1:79087597-79087616 | None:intergenic | 60.0% | |
| GTTCGGCTCCGGTCACCATC+AGG | - | chr7_1:79085666-79085685 | Msa1041500:intron | 65.0% | |
| GAGGCGTGCCCTAACCCTGA+TGG | + | chr7_1:79085684-79085703 | None:intergenic | 65.0% | |
| TCAGGGTTAGGGCACGCCTC+CGG | - | chr7_1:79085684-79085703 | Msa1041500:intron | 65.0% | |
| GGCACGCCTCCGGGTCTAAA+GGG | - | chr7_1:79085694-79085713 | Msa1041500:intron | 65.0% | |
| CATACCGCTCGGCCAACGAG+CGG | + | chr7_1:79087543-79087562 | None:intergenic | 65.0% | |
| GCGATCCCCCTAACACGAGG+TGG | + | chr7_1:79087594-79087613 | None:intergenic | 65.0% | |
| CAGGGTTAGGGCACGCCTCC+GGG | - | chr7_1:79085685-79085704 | Msa1041500:intron | 70.0% | |
| GGGCACGCCTCCGGGTCTAA+AGG | - | chr7_1:79085693-79085712 | Msa1041500:intron | 70.0% | |
| CACACCGCTCGTTGGCCGAG+CGG | - | chr7_1:79087536-79087555 | Msa1041500:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 79084486 | 79088498 | 79084486 | ID=Msa1041500;Name=Msa1041500 |
| chr7_1 | mRNA | 79084486 | 79088498 | 79084486 | ID=Msa1041500-mRNA-1;Parent=Msa1041500;Name=Msa1041500-mRNA-1;_AED=0.07;_eAED=0.07;_QI=188|1|1|1|0.5|0.33|3|277|306 |
| chr7_1 | exon | 79084486 | 79085577 | 79084486 | ID=Msa1041500-mRNA-1:exon:21235;Parent=Msa1041500-mRNA-1 |
| chr7_1 | exon | 79088040 | 79088201 | 79088040 | ID=Msa1041500-mRNA-1:exon:21234;Parent=Msa1041500-mRNA-1 |
| chr7_1 | exon | 79088367 | 79088498 | 79088367 | ID=Msa1041500-mRNA-1:exon:21233;Parent=Msa1041500-mRNA-1 |
| chr7_1 | five_prime_UTR | 79088367 | 79088498 | 79088367 | ID=Msa1041500-mRNA-1:five_prime_utr;Parent=Msa1041500-mRNA-1 |
| chr7_1 | five_prime_UTR | 79088146 | 79088201 | 79088146 | ID=Msa1041500-mRNA-1:five_prime_utr;Parent=Msa1041500-mRNA-1 |
| chr7_1 | CDS | 79088040 | 79088145 | 79088040 | ID=Msa1041500-mRNA-1:cds;Parent=Msa1041500-mRNA-1 |
| chr7_1 | CDS | 79084763 | 79085577 | 79084763 | ID=Msa1041500-mRNA-1:cds;Parent=Msa1041500-mRNA-1 |
| chr7_1 | three_prime_UTR | 79084486 | 79084762 | 79084486 | ID=Msa1041500-mRNA-1:three_prime_utr;Parent=Msa1041500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
