AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0029960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0029960 MtrunA17_Chr1g0186981 87.994 683 69 4 1 682 1 671 0.0 1231
Msa0029960 MtrunA17_Chr1g0187001 59.476 649 241 10 31 676 9 638 0.0 781
Msa0029960 MtrunA17_Chr1g0186991 52.430 679 292 9 16 682 16 675 0.0 714
Msa0029960 MtrunA17_Chr1g0165791 42.614 704 359 11 6 682 1 686 0.0 556
Msa0029960 MtrunA17_Chr1g0186841 33.857 700 388 21 18 679 6 668 2.50e-100 322
Msa0029960 MtrunA17_Chr1g0186851 29.429 683 410 18 33 679 20 666 7.02e-87 286
Msa0029960 MtrunA17_Chr1g0186861 29.351 678 407 17 33 673 20 662 3.84e-82 273
Msa0029960 MtrunA17_Chr1g0187041 28.739 682 412 16 33 676 20 665 8.75e-81 270
Msa0029960 MtrunA17_Chr1g0186911 30.822 584 352 16 107 673 12 560 3.40e-75 252
Msa0029960 MtrunA17_Chr3g0116601 25.270 740 441 27 8 672 2 704 4.56e-48 180
Msa0029960 MtrunA17_Chr7g0226571 27.743 638 378 23 92 675 104 712 1.09e-47 179
Msa0029960 MtrunA17_Chr8g0381301 26.341 634 382 25 92 672 101 702 3.59e-41 160
Msa0029960 MtrunA17_Chr8g0364451 51.923 104 49 1 83 185 36 139 3.00e-23 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0029960 AT3G01680.1 25.235 638 399 22 92 673 113 728 6.66e-45 172
Msa0029960 AT3G01670.2 22.715 744 412 24 35 672 158 844 7.99e-35 142
Msa0029960 AT3G01670.1 22.715 744 412 24 35 672 134 820 1.37e-34 141
Msa0029960 AT1G67790.1 21.127 710 425 23 29 657 2 657 8.08e-16 81.6

Find 163 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTCCTGTCTTTGTTTAT+TGG 0.122437 1_1:+55798687 Msa0029960:CDS
TACATCATCTGAAATCTTTC+TGG 0.136792 1_1:-55798549 None:intergenic
GCTTATAGAGAGAGGCTTTC+TGG 0.142359 1_1:+55799053 Msa0029960:CDS
ACCATATTGCCCACTCTTTC+AGG 0.142806 1_1:-55798610 None:intergenic
ATCACACACTACATATTATT+TGG 0.156672 1_1:-55801091 None:intergenic
GCTGCTTTCACTTTGGAATA+TGG 0.196918 1_1:+55798449 Msa0029960:CDS
CAAACGATCAACAATATCTT+TGG 0.212916 1_1:-55799264 None:intergenic
CTAACCGTGTTCCAAGTTTC+TGG 0.231135 1_1:+55800543 Msa0029960:CDS
TTATGTAATAGCCCTTTAAA+TGG 0.231499 1_1:+55801116 Msa0029960:three_prime_UTR
GCATAGAAGCATTCCCATTT+AGG 0.255874 1_1:+55799931 Msa0029960:CDS
CCAACTCAAGTGTGAAATCT+TGG 0.257534 1_1:-55800445 None:intergenic
TAAAGAGTATTATGAGATTA+AGG 0.261690 1_1:+55800802 Msa0029960:CDS
GACTGTGGATTGCGAGATTC+AGG 0.273949 1_1:+55800607 Msa0029960:CDS
AGCTTCAGTGTAGGAAATTC+TGG 0.283336 1_1:-55798219 None:intergenic
ACGAATAAGAAGAACATAAC+TGG 0.286128 1_1:-55801253 None:intergenic
GGACATAACATTAAACTTCT+TGG 0.288405 1_1:+55800692 Msa0029960:CDS
GTGAATTTGTGGCATTCTTT+TGG 0.296256 1_1:-55797767 None:intergenic
AGTTGAAGTGGAGCTGGCTT+TGG 0.302256 1_1:+55799976 Msa0029960:CDS
TCAATGTAGCCTATTAATTC+TGG 0.303319 1_1:-55799828 None:intergenic
GGGTTGAACACTGGGATAAT+AGG 0.303798 1_1:-55799858 None:intergenic
TGTGTCCAGTGTTGTACTTC+AGG 0.307656 1_1:+55797914 Msa0029960:CDS
AGCCTTACCTGGCTGTTTCC+AGG 0.309456 1_1:-55800216 None:intergenic
CTTTGGTTGAGTTTCAGAAT+TGG 0.315143 1_1:+55800738 Msa0029960:CDS
AATCAAACACCAAGATTGTT+TGG 0.319195 1_1:-55800977 None:intergenic
CAAAACTAACCGATTTAACT+TGG 0.323657 1_1:-55799343 None:intergenic
ACACGTCCACACATAGGATT+TGG 0.331012 1_1:-55800908 None:intergenic
AAACTGGTTACAGAAATCTT+TGG 0.333186 1_1:-55798192 None:intergenic
AATCCGAAAGAACCAATAAA+AGG 0.336470 1_1:+55799651 Msa0029960:CDS
CAGAAACTTGGAACACGGTT+AGG 0.346769 1_1:-55800542 None:intergenic
ATAAAAGATCCAGAATTAAT+AGG 0.348273 1_1:+55799819 Msa0029960:CDS
GACAGATACATCTTTATCTA+TGG 0.353153 1_1:+55800401 Msa0029960:CDS
TTCAGATGATGTAACTGAAT+TGG 0.354961 1_1:+55798559 Msa0029960:CDS
TCTTTCTGACCCACAGATCT+TGG 0.357820 1_1:+55797827 Msa0029960:CDS
TGAGAAGTTGGTTGCGCAAC+TGG 0.359692 1_1:+55799082 Msa0029960:CDS
TTAAATATACAAACCTTAAG+AGG 0.361830 1_1:+55797670 Msa0029960:five_prime_UTR
AGGAAATTCTGGTTTGAAAC+TGG 0.363197 1_1:-55798208 None:intergenic
TTGGCTCAAATTGCTATTAG+TGG 0.371938 1_1:-55797748 None:intergenic
TTAAGGTTTGTATATTTAAG+AGG 0.376562 1_1:-55797666 None:intergenic
AGAGGAAATGAATGATGGTT+TGG 0.377654 1_1:-55797648 None:intergenic
TTTATTCTCACCCATTTAAA+GGG 0.378977 1_1:-55801127 None:intergenic
GGAAACTATTTGCACCTTAA+CGG 0.379564 1_1:+55798470 Msa0029960:CDS
AAACGATCAACAATATCTTT+GGG 0.385496 1_1:-55799263 None:intergenic
GATTGTCCACAAATCTTTGA+AGG 0.387124 1_1:+55799314 Msa0029960:CDS
AGAGGAGTAGTAACCTCTTA+AGG 0.389066 1_1:-55797683 None:intergenic
CAAGTCCATAGCATCTTCAT+TGG 0.391630 1_1:-55799895 None:intergenic
GCTTCAATTGTTGCTTCTAC+TGG 0.392927 1_1:+55798716 Msa0029960:CDS
ACTTCTTGGTCACGGTGAAC+CGG 0.408117 1_1:+55800706 Msa0029960:CDS
CCAAGATTTCACACTTGAGT+TGG 0.414566 1_1:+55800445 Msa0029960:CDS
ACTGAAGCTGATTTCTTGTC+AGG 0.416605 1_1:+55798233 Msa0029960:CDS
AAGAGCAACTCCTGGTATAC+AGG 0.418681 1_1:+55800010 Msa0029960:CDS
ATGGAGGTACCAACAAGAAA+TGG 0.425568 1_1:+55800420 Msa0029960:CDS
ACCTATAGTTCAAATGTTAT+AGG 0.425924 1_1:+55800872 Msa0029960:CDS
TTCCTTTAGGGTTGAACACT+GGG 0.427856 1_1:-55799866 None:intergenic
TCATCCCACTTGTTCACAAT+GGG 0.429462 1_1:-55799708 None:intergenic
ATCTTGGATCCATTTCTTGT+TGG 0.434085 1_1:-55800429 None:intergenic
GAAGAATCCATAGTGTTGTT+TGG 0.438259 1_1:-55798379 None:intergenic
TTCTGGCATTGTTGAGAAGT+TGG 0.438330 1_1:+55799070 Msa0029960:CDS
AACTCTAGCTGCTTTCACTT+TGG 0.440676 1_1:+55798442 Msa0029960:CDS
GTTGAAGTGGAGCTGGCTTT+GGG 0.443006 1_1:+55799977 Msa0029960:CDS
TGAATTGGTCAAACATATAG+TGG 0.443756 1_1:+55798574 Msa0029960:CDS
TGTGGGTCAGAAAGATCAAA+TGG 0.446611 1_1:-55797819 None:intergenic
TCTATACCCATCCAGAAACT+TGG 0.447489 1_1:-55800554 None:intergenic
ACCTATAACATTTGAACTAT+AGG 0.448924 1_1:-55800873 None:intergenic
TCAGAAAGATCAAATGGGTT+TGG 0.449551 1_1:-55797813 None:intergenic
AAGGTCACGGGTTCAAGTCC+TGG 0.451424 1_1:+55800198 Msa0029960:intron
TATTATAACGTCTGCACGCT+TGG 0.452880 1_1:-55800492 None:intergenic
GCATACACCAAACAACACTA+TGG 0.453423 1_1:+55798372 Msa0029960:CDS
AGGCAATGCCCAAGTTAAAT+CGG 0.453857 1_1:+55799334 Msa0029960:CDS
GCTTCTACTGGCAACCTTGT+CGG 0.456049 1_1:+55798728 Msa0029960:CDS
ATCATGTCCCTTTCCAACTT+AGG 0.457041 1_1:+55797717 Msa0029960:exon
GTCAAAGCAGGAACATCAAC+CGG 0.457526 1_1:-55798650 None:intergenic
TATGTAATAGCCCTTTAAAT+GGG 0.459129 1_1:+55801117 Msa0029960:three_prime_UTR
TCATAAACTTCAATATCTTA+CGG 0.460267 1_1:-55801221 None:intergenic
ACCTGAAAGAGTGGGCAATA+TGG 0.460958 1_1:+55798609 Msa0029960:CDS
CCGTTGTTGCGACACCGTTA+AGG 0.465134 1_1:-55798484 None:intergenic
AGTGGCACTTCCACCTAAGT+TGG 0.470174 1_1:-55797730 None:intergenic
TTTCACACTTGAGTTGGAAA+AGG 0.472700 1_1:+55800451 Msa0029960:CDS
CGTGATGAACCAAACAATCT+TGG 0.480170 1_1:+55800968 Msa0029960:CDS
GACAAAGTGTTGGAGAAAGC+AGG 0.481405 1_1:+55800764 Msa0029960:CDS
CATCCCATGAGTAAGATCTC+AGG 0.482917 1_1:-55798406 None:intergenic
CACGTCCACACATAGGATTT+GGG 0.484874 1_1:-55800907 None:intergenic
TGAACCGGCTTATCAAACTT+TGG 0.489587 1_1:+55800721 Msa0029960:CDS
ATTTAAGAGGAAATGAATGA+TGG 0.491046 1_1:-55797653 None:intergenic
ACCTCAAGTTGAAGTGGAGC+TGG 0.493519 1_1:+55799970 Msa0029960:CDS
ATTTGTTGCAGGCGCGATAG+AGG 0.493594 1_1:+55799208 Msa0029960:intron
CAAAACCAATGAAGATGCTA+TGG 0.494017 1_1:+55799890 Msa0029960:CDS
TCTCATCTTGAATGCTATCA+AGG 0.496200 1_1:-55799590 None:intergenic
ATTCCTTTAGGGTTGAACAC+TGG 0.496497 1_1:-55799867 None:intergenic
ATCCCAGTGTTCAACCCTAA+AGG 0.500863 1_1:+55799864 Msa0029960:CDS
CAAACATATAGTGGAGATGT+TGG 0.501391 1_1:+55798583 Msa0029960:CDS
GCATTGCCTTCAAAGATTTG+TGG 0.502135 1_1:-55799320 None:intergenic
ATTGTCCAATAAACAAAGAC+AGG 0.505333 1_1:-55798692 None:intergenic
TCAACCAAAGTTTGATAAGC+CGG 0.505369 1_1:-55800725 None:intergenic
TGCAAGGCGTCTGTCAAAGC+AGG 0.508357 1_1:-55798662 None:intergenic
TTGAGTTGGAAAAGGTCAAA+AGG 0.509353 1_1:+55800459 Msa0029960:CDS
AAAACTAACCGATTTAACTT+GGG 0.509360 1_1:-55799342 None:intergenic
CCGTGTTCCAAGTTTCTGGA+TGG 0.510982 1_1:+55800547 Msa0029960:CDS
TCCTATGTGTGGACGTGTGA+TGG 0.515222 1_1:+55800913 Msa0029960:CDS
TATAATAGAGAATTATCAAG+TGG 0.519025 1_1:+55800508 Msa0029960:CDS
GTCGCAACAACGGACACACT+TGG 0.525682 1_1:+55798494 Msa0029960:CDS
ACAACAAAAGCAAGTTAACT+AGG 0.529735 1_1:-55801019 None:intergenic
AGAAACTTGGAACACGGTTA+GGG 0.531778 1_1:-55800541 None:intergenic
AAAACCTGAGATCTTACTCA+TGG 0.549235 1_1:+55798402 Msa0029960:CDS
TTCAAGTCCTGGAAACAGCC+AGG 0.550923 1_1:+55800209 Msa0029960:CDS
AACATTAAACTTCTTGGTCA+CGG 0.554079 1_1:+55800698 Msa0029960:CDS
TGTTGGATCACCTGAAAGAG+TGG 0.559929 1_1:+55798600 Msa0029960:CDS
CGTGTTCCAAGTTTCTGGAT+GGG 0.560177 1_1:+55800548 Msa0029960:CDS
CACTTCCACCTAAGTTGGAA+AGG 0.561679 1_1:-55797725 None:intergenic
TGATGTGATTCAGGTGAAAG+TGG 0.562041 1_1:+55800379 Msa0029960:intron
GACAATCAGTTCCATTGCGG+TGG 0.564546 1_1:-55799298 None:intergenic
AGACTCTGTCCAAGATCTGT+GGG 0.566297 1_1:-55797836 None:intergenic
GTCTGCTGAAGGCTATGATC+CGG 0.567475 1_1:+55798631 Msa0029960:CDS
ACTTCCACCTAAGTTGGAAA+GGG 0.571991 1_1:-55797724 None:intergenic
ATGTCCCTTTCCAACTTAGG+TGG 0.574423 1_1:+55797720 Msa0029960:CDS
GAATTGGAAAGACAAAGTGT+TGG 0.576068 1_1:+55800754 Msa0029960:CDS
ACAAAGTGTTGGAGAAAGCA+GGG 0.576612 1_1:+55800765 Msa0029960:CDS
AAGAAGACTTCAAGATTCTG+TGG 0.578055 1_1:+55799682 Msa0029960:CDS
GCCAGCTCCACTTCAACTTG+AGG 0.578077 1_1:-55799971 None:intergenic
GTACTAACCTCAAGTTGAAG+TGG 0.578286 1_1:+55799964 Msa0029960:CDS
AAAGCTTTGATCCACCGCAA+TGG 0.579125 1_1:+55799287 Msa0029960:CDS
ATCATCCCACTTGTTCACAA+TGG 0.581732 1_1:-55799709 None:intergenic
AATGGGTGAGAATAAAAGAG+TGG 0.583399 1_1:+55801134 Msa0029960:three_prime_UTR
CTTAGAATAAACCATCCTTG+TGG 0.583984 1_1:-55800665 None:intergenic
GGATGGTTTATTCTAAGCAA+AGG 0.584169 1_1:+55800671 Msa0029960:CDS
CGAATAAGAAGAACATAACT+GGG 0.589294 1_1:-55801252 None:intergenic
TAGACTCTGTCCAAGATCTG+TGG 0.589832 1_1:-55797837 None:intergenic
GTCATCAAAAGAGCAACTCC+TGG 0.591771 1_1:+55800002 Msa0029960:CDS
GTGGGTCAGAAAGATCAAAT+GGG 0.593934 1_1:-55797818 None:intergenic
AATTATCAGCTTATAGAGAG+AGG 0.595338 1_1:+55799045 Msa0029960:CDS
TTCCCATTTAGGAAAAGTGA+TGG 0.598584 1_1:+55799942 Msa0029960:CDS
CCTTAACGGTGTCGCAACAA+CGG 0.599300 1_1:+55798484 Msa0029960:CDS
TCATGTGACTGAAAGGTCAC+GGG 0.602542 1_1:+55800186 Msa0029960:intron
AAAATTCATCATCAGTGACA+TGG 0.602591 1_1:-55797866 None:intergenic
CAAGAAATCAGCTTCAGTGT+AGG 0.603259 1_1:-55798228 None:intergenic
GACTCTTAAAGTTGTTCGTG+CGG 0.607253 1_1:-55799241 None:intergenic
ATCCTTGTGGATCACGTCTG+AGG 0.611100 1_1:-55800652 None:intergenic
AAAGACAGGAATTTCTTGCA+AGG 0.611562 1_1:-55798678 None:intergenic
AAACCTGAGATCTTACTCAT+GGG 0.614423 1_1:+55798403 Msa0029960:CDS
CAAGAAGCATCAAGAGACTG+TGG 0.617134 1_1:+55800592 Msa0029960:CDS
GGAATGCTTCTATGCCCCAT+TGG 0.617439 1_1:-55799923 None:intergenic
AAATTCATCATCAGTGACAT+GGG 0.620681 1_1:-55797865 None:intergenic
ATAATAGAGAATTATCAAGT+GGG 0.621818 1_1:+55800509 Msa0029960:CDS
TCATGCCCAAATCCTATGTG+TGG 0.622369 1_1:+55800902 Msa0029960:CDS
AATTTCAAAACATTGAAGAG+TGG 0.627666 1_1:+55799744 Msa0029960:CDS
TGCCTCAGACGTGATCCACA+AGG 0.631014 1_1:+55800650 Msa0029960:CDS
TGGGCAATATGGTCTGCTGA+AGG 0.631214 1_1:+55798620 Msa0029960:CDS
ACATGATGACTCAATATGAG+AGG 0.635696 1_1:-55797701 None:intergenic
GAGAAGTTGGTTGCGCAACT+GGG 0.641871 1_1:+55799083 Msa0029960:CDS
GTTGGATCACCTGAAAGAGT+GGG 0.643180 1_1:+55798601 Msa0029960:CDS
TATAACCTGAAGTACAACAC+TGG 0.646933 1_1:-55797919 None:intergenic
CCATCCAGAAACTTGGAACA+CGG 0.647174 1_1:-55800547 None:intergenic
GGATCCCCATTGTGAACAAG+TGG 0.649592 1_1:+55799703 Msa0029960:CDS
AGATACATCTTTATCTATGG+AGG 0.650594 1_1:+55800404 Msa0029960:CDS
GATTGTTTGGTTCATCACGA+TGG 0.650985 1_1:-55800964 None:intergenic
TCCATCACACGTCCACACAT+AGG 0.651294 1_1:-55800914 None:intergenic
GTGGACAATCAGTTCCATTG+CGG 0.652857 1_1:-55799301 None:intergenic
TCAGACGTGATCCACAAGGA+TGG 0.655320 1_1:+55800654 Msa0029960:CDS
GCAATGAGCATCATTACGTG+TGG 0.675302 1_1:-55798351 None:intergenic
AAACTTACGAAACACCGACA+AGG 0.675763 1_1:-55798742 None:intergenic
TATGTGTGGACGTGTGATGG+AGG 0.691965 1_1:+55800916 Msa0029960:CDS
TCAACATTAAGAACTTCACA+TGG 0.707918 1_1:-55800848 None:intergenic
CATCCCACTTGTTCACAATG+GGG 0.719744 1_1:-55799707 None:intergenic
GATCCCCATTGTGAACAAGT+GGG 0.735559 1_1:+55799704 Msa0029960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTTAATATATACATAAAA+GGG - chr1_1:55798124-55798143 None:intergenic 10.0%
!!! ATTTGAATAATTTTGATATA+TGG + chr1_1:55800046-55800065 Msa0029960:intron 10.0%
!! TATAAAAATTATAAACAATG+TGG + chr1_1:55800085-55800104 Msa0029960:intron 10.0%
!! CTACTTAATATATACATAAA+AGG - chr1_1:55798125-55798144 None:intergenic 15.0%
!!! TCTAACAATAATATTTTTTG+TGG - chr1_1:55798875-55798894 None:intergenic 15.0%
!!! TCATTTTACTTCTTTTTAAT+TGG - chr1_1:55800113-55800132 None:intergenic 15.0%
!! TTAAGGTTTGTATATTTAAG+AGG - chr1_1:55797669-55797688 None:intergenic 20.0%
!! TTAAATATACAAACCTTAAG+AGG + chr1_1:55797670-55797689 Msa0029960:five_prime_UTR 20.0%
!! TTTAAAGACTTCAATTGATA+TGG - chr1_1:55797991-55798010 None:intergenic 20.0%
!! AATTTATGTCAATGAACTTA+TGG + chr1_1:55798049-55798068 Msa0029960:intron 20.0%
!!! CCAATGTTATTATTTTATCA+AGG - chr1_1:55798076-55798095 None:intergenic 20.0%
!! CCTTGATAAAATAATAACAT+TGG + chr1_1:55798073-55798092 Msa0029960:intron 20.0%
!!! ATTACTTATCTTTGTTTTCT+AGG + chr1_1:55799015-55799034 Msa0029960:intron 20.0%
!!! TTACTTATCTTTGTTTTCTA+GGG + chr1_1:55799016-55799035 Msa0029960:intron 20.0%
!! TTCATTTATGTAATATTGCA+GGG + chr1_1:55799522-55799541 Msa0029960:intron 20.0%
!! ATAAAAGATCCAGAATTAAT+AGG + chr1_1:55799819-55799838 Msa0029960:CDS 20.0%
!! TCAAAATTATTCAAATTGTG+AGG - chr1_1:55800042-55800061 None:intergenic 20.0%
!!! ATGATTATTTTCTGATCAAT+TGG + chr1_1:55800129-55800148 Msa0029960:intron 20.0%
!! AGACATTATAACCAATTAAA+GGG - chr1_1:55800314-55800333 None:intergenic 20.0%
!! TATAATAGAGAATTATCAAG+TGG + chr1_1:55800508-55800527 Msa0029960:CDS 20.0%
!! ATAATAGAGAATTATCAAGT+GGG + chr1_1:55800509-55800528 Msa0029960:CDS 20.0%
!!! TAAAGAGTATTATGAGATTA+AGG + chr1_1:55800802-55800821 Msa0029960:CDS 20.0%
!! TCATAAACTTCAATATCTTA+CGG - chr1_1:55801224-55801243 None:intergenic 20.0%
! ATTTAAGAGGAAATGAATGA+TGG - chr1_1:55797656-55797675 None:intergenic 25.0%
!!! TTTTTGTTGTAGTGAATTTG+TGG - chr1_1:55797781-55797800 None:intergenic 25.0%
! TGTGTTATCTTAGTAGATTA+AGG + chr1_1:55798274-55798293 Msa0029960:intron 25.0%
!! AAATTCCTGTCTTTGTTTAT+TGG + chr1_1:55798687-55798706 Msa0029960:CDS 25.0%
! TTGATATTACGGAAAAATGT+GGG + chr1_1:55798791-55798810 Msa0029960:intron 25.0%
! AAACGATCAACAATATCTTT+GGG - chr1_1:55799266-55799285 None:intergenic 25.0%
!! AAAACTAACCGATTTAACTT+GGG - chr1_1:55799345-55799364 None:intergenic 25.0%
!!! TTAGTTTTGAAACATGTAGT+AGG + chr1_1:55799357-55799376 Msa0029960:intron 25.0%
! GTTCATTTATGTAATATTGC+AGG + chr1_1:55799521-55799540 Msa0029960:intron 25.0%
!!! AAACCTTTTATTGGTTCTTT+CGG - chr1_1:55799657-55799676 None:intergenic 25.0%
!! TCTTTCTTGAAACCTTTTAT+TGG - chr1_1:55799666-55799685 None:intergenic 25.0%
!!! ATGTTTTGAAATTTTCTCTC+TGG - chr1_1:55799737-55799756 None:intergenic 25.0%
! AATTTCAAAACATTGAAGAG+TGG + chr1_1:55799744-55799763 Msa0029960:CDS 25.0%
! ATCAATTGGTTATACTATCT+TGG + chr1_1:55800143-55800162 Msa0029960:intron 25.0%
! CAGACATTATAACCAATTAA+AGG - chr1_1:55800315-55800334 None:intergenic 25.0%
! ACCTATAGTTCAAATGTTAT+AGG + chr1_1:55800872-55800891 Msa0029960:CDS 25.0%
! ACCTATAACATTTGAACTAT+AGG - chr1_1:55800876-55800895 None:intergenic 25.0%
! ATCACACACTACATATTATT+TGG - chr1_1:55801094-55801113 None:intergenic 25.0%
! TTATGTAATAGCCCTTTAAA+TGG + chr1_1:55801116-55801135 Msa0029960:three_prime_UTR 25.0%
! TATGTAATAGCCCTTTAAAT+GGG + chr1_1:55801117-55801136 Msa0029960:three_prime_UTR 25.0%
! TTTATTCTCACCCATTTAAA+GGG - chr1_1:55801130-55801149 None:intergenic 25.0%
!! TTTTATTCTCACCCATTTAA+AGG - chr1_1:55801131-55801150 None:intergenic 25.0%
AAATTCATCATCAGTGACAT+GGG - chr1_1:55797868-55797887 None:intergenic 30.0%
AAAATTCATCATCAGTGACA+TGG - chr1_1:55797869-55797888 None:intergenic 30.0%
GAATAGTCTGCAAAACAATT+TGG - chr1_1:55798173-55798192 None:intergenic 30.0%
AAACTGGTTACAGAAATCTT+TGG - chr1_1:55798195-55798214 None:intergenic 30.0%
! TACATCATCTGAAATCTTTC+TGG - chr1_1:55798552-55798571 None:intergenic 30.0%
TTCAGATGATGTAACTGAAT+TGG + chr1_1:55798559-55798578 Msa0029960:CDS 30.0%
TGAATTGGTCAAACATATAG+TGG + chr1_1:55798574-55798593 Msa0029960:CDS 30.0%
ATTGTCCAATAAACAAAGAC+AGG - chr1_1:55798695-55798714 None:intergenic 30.0%
CTATGCAAACCTTGATATTA+CGG + chr1_1:55798780-55798799 Msa0029960:intron 30.0%
! CACATTTTTCCGTAATATCA+AGG - chr1_1:55798792-55798811 None:intergenic 30.0%
CTTGATATTACGGAAAAATG+TGG + chr1_1:55798790-55798809 Msa0029960:intron 30.0%
AATTATCAGCTTATAGAGAG+AGG + chr1_1:55799045-55799064 Msa0029960:CDS 30.0%
TTTGTGATCAAAATCTCAGA+GGG - chr1_1:55799162-55799181 None:intergenic 30.0%
ATTTGTGATCAAAATCTCAG+AGG - chr1_1:55799163-55799182 None:intergenic 30.0%
! AGCTTATATCTATTTGTTGC+AGG + chr1_1:55799197-55799216 Msa0029960:intron 30.0%
CAAACGATCAACAATATCTT+TGG - chr1_1:55799267-55799286 None:intergenic 30.0%
! CAAAACTAACCGATTTAACT+TGG - chr1_1:55799346-55799365 None:intergenic 30.0%
AATCCGAAAGAACCAATAAA+AGG + chr1_1:55799651-55799670 Msa0029960:CDS 30.0%
! TGGCATCAAATTTTATGTAG+TGG + chr1_1:55799764-55799783 Msa0029960:CDS 30.0%
! CTGGATCTTTTATTATCTTG+AGG - chr1_1:55799812-55799831 None:intergenic 30.0%
TCAATGTAGCCTATTAATTC+TGG - chr1_1:55799831-55799850 None:intergenic 30.0%
!!! CATTGGTTTTGATTCCTTTA+GGG - chr1_1:55799881-55799900 None:intergenic 30.0%
!!! TCATTGGTTTTGATTCCTTT+AGG - chr1_1:55799882-55799901 None:intergenic 30.0%
! TATGGACTTGATTTTCCAAT+GGG + chr1_1:55799908-55799927 Msa0029960:CDS 30.0%
!! TACCATCACTTTTCCTAAAT+GGG - chr1_1:55799947-55799966 None:intergenic 30.0%
TCCATTTAATGATGTGATTC+AGG + chr1_1:55800370-55800389 Msa0029960:intron 30.0%
ACCTGAATCACATCATTAAA+TGG - chr1_1:55800374-55800393 None:intergenic 30.0%
GACAGATACATCTTTATCTA+TGG + chr1_1:55800401-55800420 Msa0029960:CDS 30.0%
AGATACATCTTTATCTATGG+AGG + chr1_1:55800404-55800423 Msa0029960:CDS 30.0%
GGACATAACATTAAACTTCT+TGG + chr1_1:55800692-55800711 Msa0029960:CDS 30.0%
AACATTAAACTTCTTGGTCA+CGG + chr1_1:55800698-55800717 Msa0029960:CDS 30.0%
TCAACATTAAGAACTTCACA+TGG - chr1_1:55800851-55800870 None:intergenic 30.0%
AATCAAACACCAAGATTGTT+TGG - chr1_1:55800980-55800999 None:intergenic 30.0%
ACAACAAAAGCAAGTTAACT+AGG - chr1_1:55801022-55801041 None:intergenic 30.0%
CGAATAAGAAGAACATAACT+GGG - chr1_1:55801255-55801274 None:intergenic 30.0%
ACGAATAAGAAGAACATAAC+TGG - chr1_1:55801256-55801275 None:intergenic 30.0%
AGAGGAAATGAATGATGGTT+TGG - chr1_1:55797651-55797670 None:intergenic 35.0%
ACATGATGACTCAATATGAG+AGG - chr1_1:55797704-55797723 None:intergenic 35.0%
! TTGGCTCAAATTGCTATTAG+TGG - chr1_1:55797751-55797770 None:intergenic 35.0%
! GTGAATTTGTGGCATTCTTT+TGG - chr1_1:55797770-55797789 None:intergenic 35.0%
! TCAGAAAGATCAAATGGGTT+TGG - chr1_1:55797816-55797835 None:intergenic 35.0%
TATAACCTGAAGTACAACAC+TGG - chr1_1:55797922-55797941 None:intergenic 35.0%
!! AGGAAATTCTGGTTTGAAAC+TGG - chr1_1:55798211-55798230 None:intergenic 35.0%
! GAAGAATCCATAGTGTTGTT+TGG - chr1_1:55798382-55798401 None:intergenic 35.0%
AAAACCTGAGATCTTACTCA+TGG + chr1_1:55798402-55798421 Msa0029960:CDS 35.0%
AAACCTGAGATCTTACTCAT+GGG + chr1_1:55798403-55798422 Msa0029960:CDS 35.0%
GGAAACTATTTGCACCTTAA+CGG + chr1_1:55798470-55798489 Msa0029960:CDS 35.0%
! CAAACATATAGTGGAGATGT+TGG + chr1_1:55798583-55798602 Msa0029960:CDS 35.0%
AAAGACAGGAATTTCTTGCA+AGG - chr1_1:55798681-55798700 None:intergenic 35.0%
! CGGTGTTTCGTAAGTTTTTA+TGG + chr1_1:55798748-55798767 Msa0029960:intron 35.0%
GATTGTCCACAAATCTTTGA+AGG + chr1_1:55799314-55799333 Msa0029960:CDS 35.0%
TCTCATCTTGAATGCTATCA+AGG - chr1_1:55799593-55799612 None:intergenic 35.0%
AAGAAGACTTCAAGATTCTG+TGG + chr1_1:55799682-55799701 Msa0029960:CDS 35.0%
! TCTTTTATTATCTTGAGGCC+TGG - chr1_1:55799807-55799826 None:intergenic 35.0%
CAAAACCAATGAAGATGCTA+TGG + chr1_1:55799890-55799909 Msa0029960:CDS 35.0%
! CTATGGACTTGATTTTCCAA+TGG + chr1_1:55799907-55799926 Msa0029960:CDS 35.0%
! ATGGACTTGATTTTCCAATG+GGG + chr1_1:55799909-55799928 Msa0029960:CDS 35.0%
TTCCCATTTAGGAAAAGTGA+TGG + chr1_1:55799942-55799961 Msa0029960:CDS 35.0%
!! GTACCATCACTTTTCCTAAA+TGG - chr1_1:55799948-55799967 None:intergenic 35.0%
TTATACTATCTTGGCGCAAT+TGG + chr1_1:55800152-55800171 Msa0029960:intron 35.0%
TAACCAATTAAAGGGCAATC+TGG - chr1_1:55800306-55800325 None:intergenic 35.0%
ATCTTGGATCCATTTCTTGT+TGG - chr1_1:55800432-55800451 None:intergenic 35.0%
!! TTTCACACTTGAGTTGGAAA+AGG + chr1_1:55800451-55800470 Msa0029960:CDS 35.0%
!! TTGAGTTGGAAAAGGTCAAA+AGG + chr1_1:55800459-55800478 Msa0029960:CDS 35.0%
CTTAGAATAAACCATCCTTG+TGG - chr1_1:55800668-55800687 None:intergenic 35.0%
GGATGGTTTATTCTAAGCAA+AGG + chr1_1:55800671-55800690 Msa0029960:CDS 35.0%
TCAACCAAAGTTTGATAAGC+CGG - chr1_1:55800728-55800747 None:intergenic 35.0%
CTTTGGTTGAGTTTCAGAAT+TGG + chr1_1:55800738-55800757 Msa0029960:CDS 35.0%
GAATTGGAAAGACAAAGTGT+TGG + chr1_1:55800754-55800773 Msa0029960:CDS 35.0%
AATGGGTGAGAATAAAAGAG+TGG + chr1_1:55801134-55801153 Msa0029960:three_prime_UTR 35.0%
AGAGGAGTAGTAACCTCTTA+AGG - chr1_1:55797686-55797705 None:intergenic 40.0%
ATCATGTCCCTTTCCAACTT+AGG + chr1_1:55797717-55797736 Msa0029960:exon 40.0%
! ACTTCCACCTAAGTTGGAAA+GGG - chr1_1:55797727-55797746 None:intergenic 40.0%
GTGGGTCAGAAAGATCAAAT+GGG - chr1_1:55797821-55797840 None:intergenic 40.0%
TGTGGGTCAGAAAGATCAAA+TGG - chr1_1:55797822-55797841 None:intergenic 40.0%
AGCTTCAGTGTAGGAAATTC+TGG - chr1_1:55798222-55798241 None:intergenic 40.0%
CAAGAAATCAGCTTCAGTGT+AGG - chr1_1:55798231-55798250 None:intergenic 40.0%
! ACTGAAGCTGATTTCTTGTC+AGG + chr1_1:55798233-55798252 Msa0029960:CDS 40.0%
GCATACACCAAACAACACTA+TGG + chr1_1:55798372-55798391 Msa0029960:CDS 40.0%
! AACTCTAGCTGCTTTCACTT+TGG + chr1_1:55798442-55798461 Msa0029960:CDS 40.0%
!! GCTGCTTTCACTTTGGAATA+TGG + chr1_1:55798449-55798468 Msa0029960:CDS 40.0%
! GCTTCAATTGTTGCTTCTAC+TGG + chr1_1:55798716-55798735 Msa0029960:CDS 40.0%
AAACTTACGAAACACCGACA+AGG - chr1_1:55798745-55798764 None:intergenic 40.0%
GTGGGAAACAATGACTAATG+TGG + chr1_1:55798809-55798828 Msa0029960:intron 40.0%
TTCTGGCATTGTTGAGAAGT+TGG + chr1_1:55799070-55799089 Msa0029960:CDS 40.0%
GACTCTTAAAGTTGTTCGTG+CGG - chr1_1:55799244-55799263 None:intergenic 40.0%
GCATTGCCTTCAAAGATTTG+TGG - chr1_1:55799323-55799342 None:intergenic 40.0%
AGGCAATGCCCAAGTTAAAT+CGG + chr1_1:55799334-55799353 Msa0029960:CDS 40.0%
TCATCCCACTTGTTCACAAT+GGG - chr1_1:55799711-55799730 None:intergenic 40.0%
ATCATCCCACTTGTTCACAA+TGG - chr1_1:55799712-55799731 None:intergenic 40.0%
! GAGTACTTTTCTGAGTTACC+AGG + chr1_1:55799786-55799805 Msa0029960:CDS 40.0%
!! TTCCTTTAGGGTTGAACACT+GGG - chr1_1:55799869-55799888 None:intergenic 40.0%
!! ATTCCTTTAGGGTTGAACAC+TGG - chr1_1:55799870-55799889 None:intergenic 40.0%
CAAGTCCATAGCATCTTCAT+TGG - chr1_1:55799898-55799917 None:intergenic 40.0%
!! GCATAGAAGCATTCCCATTT+AGG + chr1_1:55799931-55799950 Msa0029960:CDS 40.0%
!! GTACTAACCTCAAGTTGAAG+TGG + chr1_1:55799964-55799983 Msa0029960:CDS 40.0%
! GAGGTTTTTACCTGTATACC+AGG - chr1_1:55800023-55800042 None:intergenic 40.0%
GTTGATGTCATGTGACTGAA+AGG + chr1_1:55800179-55800198 Msa0029960:intron 40.0%
GCTGCATACAATACACCAAA+TGG + chr1_1:55800236-55800255 Msa0029960:intron 40.0%
CTAAAACTTCAGCATACGCA+GGG - chr1_1:55800279-55800298 None:intergenic 40.0%
ACTAAAACTTCAGCATACGC+AGG - chr1_1:55800280-55800299 None:intergenic 40.0%
ACACCAGATTGCCCTTTAAT+TGG + chr1_1:55800300-55800319 Msa0029960:intron 40.0%
TGATGTGATTCAGGTGAAAG+TGG + chr1_1:55800379-55800398 Msa0029960:intron 40.0%
!! ATGGAGGTACCAACAAGAAA+TGG + chr1_1:55800420-55800439 Msa0029960:CDS 40.0%
CCAACTCAAGTGTGAAATCT+TGG - chr1_1:55800448-55800467 None:intergenic 40.0%
CCAAGATTTCACACTTGAGT+TGG + chr1_1:55800445-55800464 Msa0029960:CDS 40.0%
TATTATAACGTCTGCACGCT+TGG - chr1_1:55800495-55800514 None:intergenic 40.0%
AGAAACTTGGAACACGGTTA+GGG - chr1_1:55800544-55800563 None:intergenic 40.0%
TCTATACCCATCCAGAAACT+TGG - chr1_1:55800557-55800576 None:intergenic 40.0%
! TGAACCGGCTTATCAAACTT+TGG + chr1_1:55800721-55800740 Msa0029960:CDS 40.0%
!! ACAAAGTGTTGGAGAAAGCA+GGG + chr1_1:55800765-55800784 Msa0029960:CDS 40.0%
! GATTGTTTGGTTCATCACGA+TGG - chr1_1:55800967-55800986 None:intergenic 40.0%
CGTGATGAACCAAACAATCT+TGG + chr1_1:55800968-55800987 Msa0029960:CDS 40.0%
ATGTCCCTTTCCAACTTAGG+TGG + chr1_1:55797720-55797739 Msa0029960:CDS 45.0%
! CACTTCCACCTAAGTTGGAA+AGG - chr1_1:55797728-55797747 None:intergenic 45.0%
TCTTTCTGACCCACAGATCT+TGG + chr1_1:55797827-55797846 Msa0029960:CDS 45.0%
AGACTCTGTCCAAGATCTGT+GGG - chr1_1:55797839-55797858 None:intergenic 45.0%
TAGACTCTGTCCAAGATCTG+TGG - chr1_1:55797840-55797859 None:intergenic 45.0%
TGTGTCCAGTGTTGTACTTC+AGG + chr1_1:55797914-55797933 Msa0029960:CDS 45.0%
GCAATGAGCATCATTACGTG+TGG - chr1_1:55798354-55798373 None:intergenic 45.0%
CATCCCATGAGTAAGATCTC+AGG - chr1_1:55798409-55798428 None:intergenic 45.0%
TGTTGGATCACCTGAAAGAG+TGG + chr1_1:55798600-55798619 Msa0029960:CDS 45.0%
GTTGGATCACCTGAAAGAGT+GGG + chr1_1:55798601-55798620 Msa0029960:CDS 45.0%
ACCTGAAAGAGTGGGCAATA+TGG + chr1_1:55798609-55798628 Msa0029960:CDS 45.0%
ACCATATTGCCCACTCTTTC+AGG - chr1_1:55798613-55798632 None:intergenic 45.0%
GTCAAAGCAGGAACATCAAC+CGG - chr1_1:55798653-55798672 None:intergenic 45.0%
GACTAATGTGGCCACAATTG+CGG + chr1_1:55798821-55798840 Msa0029960:intron 45.0%
GCTTATAGAGAGAGGCTTTC+TGG + chr1_1:55799053-55799072 Msa0029960:CDS 45.0%
! AAAGCTTTGATCCACCGCAA+TGG + chr1_1:55799287-55799306 Msa0029960:CDS 45.0%
GTGGACAATCAGTTCCATTG+CGG - chr1_1:55799304-55799323 None:intergenic 45.0%
! TGCGAGTGCTGTAAACTCTA+AGG - chr1_1:55799397-55799416 None:intergenic 45.0%
CAATCATTTGCGCTAGACCT+CGG + chr1_1:55799429-55799448 Msa0029960:intron 45.0%
GATCCCCATTGTGAACAAGT+GGG + chr1_1:55799704-55799723 Msa0029960:CDS 45.0%
CATCCCACTTGTTCACAATG+GGG - chr1_1:55799710-55799729 None:intergenic 45.0%
GGGTTGAACACTGGGATAAT+AGG - chr1_1:55799861-55799880 None:intergenic 45.0%
ATCCCAGTGTTCAACCCTAA+AGG + chr1_1:55799864-55799883 Msa0029960:CDS 45.0%
GTCATCAAAAGAGCAACTCC+TGG + chr1_1:55800002-55800021 Msa0029960:CDS 45.0%
AAGAGCAACTCCTGGTATAC+AGG + chr1_1:55800010-55800029 Msa0029960:CDS 45.0%
GTCATGTGACTGAAAGGTCA+CGG + chr1_1:55800185-55800204 Msa0029960:intron 45.0%
TCATGTGACTGAAAGGTCAC+GGG + chr1_1:55800186-55800205 Msa0029960:intron 45.0%
GTATTGTATGCAGCCTTACC+TGG - chr1_1:55800230-55800249 None:intergenic 45.0%
CAGAAACTTGGAACACGGTT+AGG - chr1_1:55800545-55800564 None:intergenic 45.0%
CTAACCGTGTTCCAAGTTTC+TGG + chr1_1:55800543-55800562 Msa0029960:CDS 45.0%
CCATCCAGAAACTTGGAACA+CGG - chr1_1:55800550-55800569 None:intergenic 45.0%
! CGTGTTCCAAGTTTCTGGAT+GGG + chr1_1:55800548-55800567 Msa0029960:CDS 45.0%
!! CAAGAAGCATCAAGAGACTG+TGG + chr1_1:55800592-55800611 Msa0029960:CDS 45.0%
!! GACAAAGTGTTGGAGAAAGC+AGG + chr1_1:55800764-55800783 Msa0029960:CDS 45.0%
TCATGCCCAAATCCTATGTG+TGG + chr1_1:55800902-55800921 Msa0029960:CDS 45.0%
CACGTCCACACATAGGATTT+GGG - chr1_1:55800910-55800929 None:intergenic 45.0%
ACACGTCCACACATAGGATT+TGG - chr1_1:55800911-55800930 None:intergenic 45.0%
AGTGGCACTTCCACCTAAGT+TGG - chr1_1:55797733-55797752 None:intergenic 50.0%
!! CCTTAACGGTGTCGCAACAA+CGG + chr1_1:55798484-55798503 Msa0029960:CDS 50.0%
TGGGCAATATGGTCTGCTGA+AGG + chr1_1:55798620-55798639 Msa0029960:CDS 50.0%
GTCTGCTGAAGGCTATGATC+CGG + chr1_1:55798631-55798650 Msa0029960:CDS 50.0%
GCTTCTACTGGCAACCTTGT+CGG + chr1_1:55798728-55798747 Msa0029960:CDS 50.0%
CAGCATCACAACCGCAATTG+TGG - chr1_1:55798835-55798854 None:intergenic 50.0%
! TGAGAAGTTGGTTGCGCAAC+TGG + chr1_1:55799082-55799101 Msa0029960:CDS 50.0%
! GAGAAGTTGGTTGCGCAACT+GGG + chr1_1:55799083-55799102 Msa0029960:CDS 50.0%
! ATTTGTTGCAGGCGCGATAG+AGG + chr1_1:55799208-55799227 Msa0029960:intron 50.0%
GACAATCAGTTCCATTGCGG+TGG - chr1_1:55799301-55799320 None:intergenic 50.0%
CGAGGTCTAGCGCAAATGAT+TGG - chr1_1:55799431-55799450 None:intergenic 50.0%
TAATGCATGTTGCACCACCG+AGG - chr1_1:55799449-55799468 None:intergenic 50.0%
GGATCCCCATTGTGAACAAG+TGG + chr1_1:55799703-55799722 Msa0029960:CDS 50.0%
GGAATGCTTCTATGCCCCAT+TGG - chr1_1:55799926-55799945 None:intergenic 50.0%
!! ACCTCAAGTTGAAGTGGAGC+TGG + chr1_1:55799970-55799989 Msa0029960:CDS 50.0%
! AGTTGAAGTGGAGCTGGCTT+TGG + chr1_1:55799976-55799995 Msa0029960:CDS 50.0%
!! GTTGAAGTGGAGCTGGCTTT+GGG + chr1_1:55799977-55799996 Msa0029960:CDS 50.0%
TTCAAGTCCTGGAAACAGCC+AGG + chr1_1:55800209-55800228 Msa0029960:CDS 50.0%
AACTTCAGCATACGCAGGGT+CGG - chr1_1:55800275-55800294 None:intergenic 50.0%
! CCGTGTTCCAAGTTTCTGGA+TGG + chr1_1:55800547-55800566 Msa0029960:CDS 50.0%
! GACTGTGGATTGCGAGATTC+AGG + chr1_1:55800607-55800626 Msa0029960:CDS 50.0%
ATCCTTGTGGATCACGTCTG+AGG - chr1_1:55800655-55800674 None:intergenic 50.0%
TCAGACGTGATCCACAAGGA+TGG + chr1_1:55800654-55800673 Msa0029960:CDS 50.0%
ACTTCTTGGTCACGGTGAAC+CGG + chr1_1:55800706-55800725 Msa0029960:CDS 50.0%
TCCTATGTGTGGACGTGTGA+TGG + chr1_1:55800913-55800932 Msa0029960:CDS 50.0%
TCCATCACACGTCCACACAT+AGG - chr1_1:55800917-55800936 None:intergenic 50.0%
TATGTGTGGACGTGTGATGG+AGG + chr1_1:55800916-55800935 Msa0029960:CDS 50.0%
CCGTTGTTGCGACACCGTTA+AGG - chr1_1:55798487-55798506 None:intergenic 55.0%
GTCGCAACAACGGACACACT+TGG + chr1_1:55798494-55798513 Msa0029960:CDS 55.0%
! TGCAAGGCGTCTGTCAAAGC+AGG - chr1_1:55798665-55798684 None:intergenic 55.0%
TTGCGGTTGTGATGCTGTCG+TGG + chr1_1:55798838-55798857 Msa0029960:intron 55.0%
! GTGATGCTGTCGTGGTCTTG+TGG + chr1_1:55798846-55798865 Msa0029960:intron 55.0%
TCATTTGCGCTAGACCTCGG+TGG + chr1_1:55799432-55799451 Msa0029960:intron 55.0%
GCCAGCTCCACTTCAACTTG+AGG - chr1_1:55799974-55799993 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr1_1:55800198-55800217 Msa0029960:intron 55.0%
GTCCTGGAAACAGCCAGGTA+AGG + chr1_1:55800214-55800233 Msa0029960:intron 55.0%
! AGCCTTACCTGGCTGTTTCC+AGG - chr1_1:55800219-55800238 None:intergenic 55.0%
GGAGAAGGGGTCTCACCATT+TGG - chr1_1:55800254-55800273 None:intergenic 55.0%
TGCCTCAGACGTGATCCACA+AGG + chr1_1:55800650-55800669 Msa0029960:CDS 55.0%
CATACGCAGGGTCGGAGAAG+GGG - chr1_1:55800267-55800286 None:intergenic 60.0%
GCATACGCAGGGTCGGAGAA+GGG - chr1_1:55800268-55800287 None:intergenic 60.0%
AGCATACGCAGGGTCGGAGA+AGG - chr1_1:55800269-55800288 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 55797636 55801276 55797636 ID=Msa0029960;Name=Msa0029960
chr1_1 mRNA 55797636 55801276 55797636 ID=Msa0029960-mRNA-1;Parent=Msa0029960;Name=Msa0029960-mRNA-1;_AED=0.10;_eAED=0.10;_QI=84|0.71|0.87|0.87|1|1|8|279|682
chr1_1 exon 55797636 55797935 55797636 ID=Msa0029960-mRNA-1:exon:16653;Parent=Msa0029960-mRNA-1
chr1_1 exon 55798186 55798254 55798186 ID=Msa0029960-mRNA-1:exon:16654;Parent=Msa0029960-mRNA-1
chr1_1 exon 55798344 55798756 55798344 ID=Msa0029960-mRNA-1:exon:16655;Parent=Msa0029960-mRNA-1
chr1_1 exon 55799037 55799125 55799037 ID=Msa0029960-mRNA-1:exon:16656;Parent=Msa0029960-mRNA-1
chr1_1 exon 55799219 55799355 55799219 ID=Msa0029960-mRNA-1:exon:16657;Parent=Msa0029960-mRNA-1
chr1_1 exon 55799543 55800031 55799543 ID=Msa0029960-mRNA-1:exon:16658;Parent=Msa0029960-mRNA-1
chr1_1 exon 55800201 55800230 55800201 ID=Msa0029960-mRNA-1:exon:16659;Parent=Msa0029960-mRNA-1
chr1_1 exon 55800392 55801276 55800392 ID=Msa0029960-mRNA-1:exon:16660;Parent=Msa0029960-mRNA-1
chr1_1 five_prime_UTR 55797636 55797719 55797636 ID=Msa0029960-mRNA-1:five_prime_utr;Parent=Msa0029960-mRNA-1
chr1_1 CDS 55797720 55797935 55797720 ID=Msa0029960-mRNA-1:cds;Parent=Msa0029960-mRNA-1
chr1_1 CDS 55798186 55798254 55798186 ID=Msa0029960-mRNA-1:cds;Parent=Msa0029960-mRNA-1
chr1_1 CDS 55798344 55798756 55798344 ID=Msa0029960-mRNA-1:cds;Parent=Msa0029960-mRNA-1
chr1_1 CDS 55799037 55799125 55799037 ID=Msa0029960-mRNA-1:cds;Parent=Msa0029960-mRNA-1
chr1_1 CDS 55799219 55799355 55799219 ID=Msa0029960-mRNA-1:cds;Parent=Msa0029960-mRNA-1
chr1_1 CDS 55799543 55800031 55799543 ID=Msa0029960-mRNA-1:cds;Parent=Msa0029960-mRNA-1
chr1_1 CDS 55800201 55800230 55800201 ID=Msa0029960-mRNA-1:cds;Parent=Msa0029960-mRNA-1
chr1_1 CDS 55800392 55800997 55800392 ID=Msa0029960-mRNA-1:cds;Parent=Msa0029960-mRNA-1
chr1_1 three_prime_UTR 55800998 55801276 55800998 ID=Msa0029960-mRNA-1:three_prime_utr;Parent=Msa0029960-mRNA-1
Gene Sequence

>Msa0029960

ATGTCCCTTTCCAACTTAGGTGGAAGTGCCACTAATAGCAATTTGAGCCAAAAGAATGCCACAAATTCACTACAACAAAAAGCTAATTTCTTGCCAAACCCATTTGATCTTTCTGACCCACAGATCTTGGACAGAGTCTATCTCACCCATGTCACTGATGATGAATTTTGTGATACAAATATCATTTTTGAACTTGTGTCCAGTGTTGTACTTCAGACTATTCCAAAGATTTCTGTAACCAGTTTCAAACCAGAATTTCCTACACTGAAGCTGATTTCTTGTCAGATGATAACCACACGTAATGATGCTCATTGCATACACCAAACAACACTATGGATTCTTCAAAACCTGAGATCTTACTCATGGGATGCAAAAGCACTTATAACTCTAGCTGCTTTCACTTTGGAATATGGAAACTATTTGCACCTTAACGGTGTCGCAACAACGGACACACTTGGAAACTCATTGAGAGTATTGAATCAAGTTCAAACCAGAAAGATTTCAGATGATGTAACTGAATTGGTCAAACATATAGTGGAGATGTTGGATCACCTGAAAGAGTGGGCAATATGGTCTGCTGAAGGCTATGATCCGGTTGATGTTCCTGCTTTGACAGACGCCTTGCAAGAAATTCCTGTCTTTGTTTATTGGACAATTGCTTCAATTGTTGCTTCTACTGGCAACCTTGTCGGTGTTTCGGACTATAAATTATCAGCTTATAGAGAGAGGCTTTCTGGCATTGTTGAGAAGTTGGTTGCGCAACTGGGAACATGCAAACAGCAAATAAGCGCGATAGAGGATATATTTAACCGCACGAACAACTTTAAGAGTCCCAAAGATATTGTTGATCGTTTGAAAGCTTTGATCCACCGCAATGGAACTGATTGTCCACAAATCTTTGAAGGCAATGCCCAAGTTAAATCGGGTCTTGATATTTTTAAGCAGAAACATGTGTTGCTATTCATTTCAAGCCTTGATAGCATTCAAGATGAGATCACACTTTTGAATTCAATCTATGAAAGATTGCAAGAAAATCCGAAAGAACCAATAAAAGGTTTCAAGAAAGAAGACTTCAAGATTCTGTGGATCCCCATTGTGAACAAGTGGGATGATATCCAGAGAGAAAATTTCAAAACATTGAAGAGTGGCATCAAATTTTATGTAGTGGAGTACTTTTCTGAGTTACCAGGCCTCAAGATAATAAAAGATCCAGAATTAATAGGCTACATTGATGATAAGCCTATTATCCCAGTGTTCAACCCTAAAGGAATCAAAACCAATGAAGATGCTATGGACTTGATTTTCCAATGGGGCATAGAAGCATTCCCATTTAGGAAAAGTGATGGTACTAACCTCAAGTTGAAGTGGAGCTGGCTTTGGGATGTCATCAAAAGAGCAACTCCTGGTATACAGGTCACGGGTTCAAGTCCTGGAAACAGCCAGGTGAAAGTGGACAGATACATCTTTATCTATGGAGGTACCAACAAGAAATGGATCCAAGATTTCACACTTGAGTTGGAAAAGGTCAAAAGGCACGAGACTACCAAGCGTGCAGACGTTATAATAGAGAATTATCAAGTGGGCAAAGATGACCCTAACCGTGTTCCAAGTTTCTGGATGGGTATAGAAAGAAAGAAACAAAACAAGAAGCATCAAGAGACTGTGGATTGCGAGATTCAGGAAATAGTGAAAGAGTTGTTTTGCCTCAGACGTGATCCACAAGGATGGTTTATTCTAAGCAAAGGACATAACATTAAACTTCTTGGTCACGGTGAACCGGCTTATCAAACTTTGGTTGAGTTTCAGAATTGGAAAGACAAAGTGTTGGAGAAAGCAGGGTTTGATATTGCATTTAAAGAGTATTATGAGATTAAGGCTAAAGAGATATCTGATCGTGAACCATGTGAAGTTCTTAATGTTGATACCTATAGTTCAAATGTTATAGGTACTATATCATGCCCAAATCCTATGTGTGGACGTGTGATGGAGGTTAGTTCTATTCATTACAAATGCTGCCATCGTGATGAACCAAACAATCTTGGTGTTTGA
Protein sequence

>Msa0029960

MSLSNLGGSATNSNLSQKNATNSLQQKANFLPNPFDLSDPQILDRVYLTHVTDDEFCDTNIIFELVSSVVLQTIPKISVTSFKPEFPTLKLISCQMITTRNDAHCIHQTTLWILQNLRSYSWDAKALITLAAFTLEYGNYLHLNGVATTDTLGNSLRVLNQVQTRKISDDVTELVKHIVEMLDHLKEWAIWSAEGYDPVDVPALTDALQEIPVFVYWTIASIVASTGNLVGVSDYKLSAYRERLSGIVEKLVAQLGTCKQQISAIEDIFNRTNNFKSPKDIVDRLKALIHRNGTDCPQIFEGNAQVKSGLDIFKQKHVLLFISSLDSIQDEITLLNSIYERLQENPKEPIKGFKKEDFKILWIPIVNKWDDIQRENFKTLKSGIKFYVVEYFSELPGLKIIKDPELIGYIDDKPIIPVFNPKGIKTNEDAMDLIFQWGIEAFPFRKSDGTNLKLKWSWLWDVIKRATPGIQVTGSSPGNSQVKVDRYIFIYGGTNKKWIQDFTLELEKVKRHETTKRADVIIENYQVGKDDPNRVPSFWMGIERKKQNKKHQETVDCEIQEIVKELFCLRRDPQGWFILSKGHNIKLLGHGEPAYQTLVEFQNWKDKVLEKAGFDIAFKEYYEIKAKEISDREPCEVLNVDTYSSNVIGTISCPNPMCGRVMEVSSIHYKCCHRDEPNNLGV*