Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166440 | XP_024626079.1 | 95.050 | 303 | 15 | 0 | 4 | 306 | 2 | 304 | 0.0 | 608 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166440 | sp|Q66GR8|NET3A_ARATH | 38.129 | 278 | 116 | 10 | 11 | 274 | 6 | 241 | 1.29e-44 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166440 | G7KQY6 | 95.050 | 303 | 15 | 0 | 4 | 306 | 2 | 304 | 0.0 | 608 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029960 | Msa1166440 | 0.814739 | 1.321271e-51 | -8.615850e-47 |
| Msa0115550 | Msa1166440 | 0.804118 | 2.518297e-49 | -8.615850e-47 |
| Msa0709440 | Msa1166440 | 0.810682 | 1.020873e-50 | -8.615850e-47 |
| Msa0714520 | Msa1166440 | 0.818616 | 1.786440e-52 | -8.615850e-47 |
| Msa0737990 | Msa1166440 | 0.800133 | 1.662631e-48 | -8.615850e-47 |
| Msa0805680 | Msa1166440 | 0.803582 | 3.254018e-49 | -8.615850e-47 |
| Msa0835350 | Msa1166440 | 0.810006 | 1.428283e-50 | -8.615850e-47 |
| Msa0232760 | Msa1166440 | 0.800172 | 1.632424e-48 | -8.615850e-47 |
| Msa0481890 | Msa1166440 | 0.814708 | 1.342235e-51 | -8.615850e-47 |
| Msa1041500 | Msa1166440 | 0.951496 | 1.805512e-109 | -8.615850e-47 |
| Msa1081540 | Msa1166440 | 0.833011 | 6.814494e-56 | -8.615850e-47 |
| Msa1084530 | Msa1166440 | 0.811606 | 6.436951e-51 | -8.615850e-47 |
| Msa1125820 | Msa1166440 | 0.818689 | 1.719414e-52 | -8.615850e-47 |
| Msa1125990 | Msa1166440 | 0.814519 | 1.478088e-51 | -8.615850e-47 |
| Msa1162180 | Msa1166440 | 0.825419 | 4.735466e-54 | -8.615850e-47 |
| Msa1166440 | Msa1171290 | 0.809453 | 1.878133e-50 | -8.615850e-47 |
| Msa1166440 | Msa1254540 | 0.811281 | 7.571666e-51 | -8.615850e-47 |
| Msa1166440 | Msa1268630 | 0.803682 | 3.103052e-49 | -8.615850e-47 |
| Msa1166440 | Msa1380120 | 0.809511 | 1.825382e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166440 | MtrunA17_Chr7g0268631 | 95.050 | 303 | 15 | 0 | 4 | 306 | 45 | 347 | 0.0 | 607 |
| Msa1166440 | MtrunA17_Chr1g0196081 | 57.895 | 247 | 81 | 6 | 6 | 250 | 10 | 235 | 1.83e-81 | 254 |
| Msa1166440 | MtrunA17_Chr1g0196081 | 56.349 | 126 | 55 | 0 | 168 | 293 | 364 | 489 | 4.57e-37 | 138 |
| Msa1166440 | MtrunA17_Chr1g0204981 | 48.649 | 111 | 41 | 3 | 12 | 109 | 14 | 121 | 1.21e-27 | 113 |
| Msa1166440 | MtrunA17_Chr5g0394641 | 38.953 | 172 | 81 | 4 | 12 | 183 | 14 | 161 | 1.44e-26 | 110 |
| Msa1166440 | MtrunA17_Chr1g0185241 | 54.945 | 91 | 38 | 2 | 12 | 102 | 16 | 103 | 1.58e-26 | 109 |
| Msa1166440 | MtrunA17_Chr5g0432781 | 64.557 | 79 | 25 | 2 | 12 | 90 | 22 | 97 | 1.78e-25 | 106 |
| Msa1166440 | MtrunA17_Chr5g0412211 | 49.000 | 100 | 43 | 3 | 12 | 106 | 11 | 107 | 1.97e-25 | 106 |
| Msa1166440 | MtrunA17_Chr7g0260161 | 51.579 | 95 | 43 | 2 | 8 | 102 | 10 | 101 | 2.53e-25 | 106 |
| Msa1166440 | MtrunA17_Chr8g0367521 | 44.565 | 92 | 48 | 2 | 12 | 103 | 11 | 99 | 1.63e-21 | 95.1 |
| Msa1166440 | MtrunA17_Chr5g0427501 | 49.367 | 79 | 37 | 2 | 12 | 90 | 11 | 86 | 1.32e-19 | 89.4 |
| Msa1166440 | MtrunA17_Chr3g0107891 | 59.722 | 72 | 24 | 2 | 19 | 90 | 2 | 68 | 1.83e-17 | 82.8 |
| Msa1166440 | MtrunA17_Chr3g0132861 | 36.458 | 96 | 59 | 1 | 21 | 114 | 12 | 107 | 2.55e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166440 | AT1G03470.2 | 38.129 | 278 | 116 | 10 | 11 | 274 | 6 | 241 | 1.31e-45 | 155 |
| Msa1166440 | AT1G03470.3 | 38.129 | 278 | 116 | 10 | 11 | 274 | 6 | 241 | 1.31e-45 | 155 |
| Msa1166440 | AT1G03470.1 | 38.129 | 278 | 116 | 10 | 11 | 274 | 6 | 241 | 1.31e-45 | 155 |
| Msa1166440 | AT1G03470.4 | 38.129 | 278 | 116 | 10 | 11 | 274 | 6 | 241 | 1.31e-45 | 155 |
| Msa1166440 | AT2G47920.2 | 34.615 | 286 | 120 | 8 | 4 | 286 | 1 | 222 | 1.40e-38 | 136 |
| Msa1166440 | AT2G47920.1 | 34.615 | 286 | 120 | 8 | 4 | 286 | 1 | 222 | 1.40e-38 | 136 |
| Msa1166440 | AT3G22790.1 | 57.471 | 87 | 33 | 2 | 12 | 98 | 14 | 96 | 1.84e-27 | 113 |
| Msa1166440 | AT3G22790.3 | 57.471 | 87 | 33 | 2 | 12 | 98 | 14 | 96 | 1.84e-27 | 113 |
| Msa1166440 | AT3G22790.2 | 57.471 | 87 | 33 | 2 | 12 | 98 | 14 | 96 | 1.84e-27 | 113 |
| Msa1166440 | AT1G03080.3 | 56.180 | 89 | 35 | 3 | 1 | 88 | 1 | 86 | 1.56e-26 | 110 |
| Msa1166440 | AT1G03080.1 | 56.180 | 89 | 35 | 3 | 1 | 88 | 1 | 86 | 1.56e-26 | 110 |
| Msa1166440 | AT1G03080.2 | 56.180 | 89 | 35 | 3 | 1 | 88 | 1 | 86 | 1.56e-26 | 110 |
| Msa1166440 | AT2G30500.2 | 55.172 | 87 | 36 | 2 | 12 | 98 | 22 | 105 | 5.95e-26 | 107 |
| Msa1166440 | AT2G30500.1 | 55.172 | 87 | 36 | 2 | 12 | 98 | 22 | 105 | 5.95e-26 | 107 |
| Msa1166440 | AT2G30500.3 | 55.172 | 87 | 36 | 2 | 12 | 98 | 21 | 104 | 6.65e-26 | 107 |
| Msa1166440 | AT2G22560.1 | 52.174 | 92 | 41 | 2 | 12 | 103 | 11 | 99 | 4.16e-25 | 105 |
| Msa1166440 | AT4G02710.1 | 47.959 | 98 | 48 | 2 | 1 | 98 | 3 | 97 | 1.61e-24 | 104 |
| Msa1166440 | AT4G14760.4 | 50.000 | 90 | 41 | 2 | 12 | 101 | 14 | 99 | 4.30e-24 | 103 |
| Msa1166440 | AT4G14760.2 | 50.000 | 90 | 41 | 2 | 12 | 101 | 14 | 99 | 4.30e-24 | 103 |
| Msa1166440 | AT4G14760.3 | 50.000 | 90 | 41 | 2 | 12 | 101 | 14 | 99 | 4.30e-24 | 103 |
| Msa1166440 | AT4G14760.1 | 50.000 | 90 | 41 | 2 | 12 | 101 | 14 | 99 | 4.30e-24 | 103 |
| Msa1166440 | AT5G10500.1 | 47.826 | 92 | 45 | 2 | 12 | 103 | 11 | 99 | 8.99e-23 | 99.0 |
| Msa1166440 | AT5G58320.5 | 50.000 | 94 | 38 | 4 | 13 | 106 | 23 | 107 | 2.86e-22 | 97.4 |
| Msa1166440 | AT5G58320.2 | 50.000 | 94 | 38 | 4 | 13 | 106 | 23 | 107 | 2.86e-22 | 97.4 |
| Msa1166440 | AT5G58320.1 | 50.000 | 94 | 38 | 4 | 13 | 106 | 23 | 107 | 3.81e-22 | 96.7 |
| Msa1166440 | AT5G58320.4 | 50.000 | 94 | 38 | 4 | 13 | 106 | 23 | 107 | 3.81e-22 | 96.7 |
| Msa1166440 | AT1G09720.1 | 47.368 | 95 | 46 | 3 | 12 | 105 | 11 | 102 | 8.49e-22 | 96.3 |
| Msa1166440 | AT1G58215.1 | 54.430 | 79 | 33 | 2 | 12 | 90 | 11 | 86 | 8.55e-22 | 96.3 |
| Msa1166440 | AT4G03153.1 | 46.988 | 83 | 40 | 2 | 9 | 88 | 3 | 84 | 9.09e-20 | 86.3 |
| Msa1166440 | AT5G58320.3 | 57.143 | 63 | 21 | 2 | 44 | 106 | 8 | 64 | 1.15e-15 | 77.4 |
Find 69 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTACATTGATGTCATTTA+TGG | 0.101707 | 7_4:+58536970 | Msa1166440:three_prime_UTR |
| CCATTTGATTTCAACAAATT+TGG | 0.108602 | 7_4:+58536608 | Msa1166440:CDS |
| TTGTTTAACATATAGGGTTT+TGG | 0.220526 | 7_4:+58534116 | Msa1166440:intron |
| TTATACATAACTATGCTATT+TGG | 0.267385 | 7_4:-58536715 | None:intergenic |
| GAATACATAAACAGGGTTTA+AGG | 0.272081 | 7_4:-58536915 | None:intergenic |
| ACAATTGGAATACATATAAC+TGG | 0.278852 | 7_4:-58536845 | None:intergenic |
| ATGAACGTACTTGATTAAAT+TGG | 0.290941 | 7_4:-58533722 | None:intergenic |
| GGAAATGGCCACCTCGTGTT+AGG | 0.300099 | 7_4:+58536089 | Msa1166440:CDS |
| CCAAATTTGTTGAAATCAAA+TGG | 0.300234 | 7_4:-58536608 | None:intergenic |
| ACAAGAATCAACAATCAAAT+TGG | 0.341635 | 7_4:+58534203 | Msa1166440:CDS |
| TTCAACCATGCTAACAAGTT+CGG | 0.381083 | 7_4:-58536006 | None:intergenic |
| CCTTATGAACCGTGTTCTCT+TGG | 0.381186 | 7_4:-58536358 | None:intergenic |
| TCAACACTGGGCTGATTCCT+TGG | 0.385966 | 7_4:-58536665 | None:intergenic |
| TGGCTTCAATCCACTCTATC+TGG | 0.406922 | 7_4:+58534271 | Msa1166440:CDS |
| CTAAAGAGTCCGCAAAGAAA+TGG | 0.414884 | 7_4:+58536579 | Msa1166440:CDS |
| TGGGAACTTCCATTTCTTTG+CGG | 0.421919 | 7_4:-58536588 | None:intergenic |
| TCAACCATGCTAACAAGTTC+GGG | 0.422442 | 7_4:-58536005 | None:intergenic |
| CATATAACTGGGCAAGTAAA+GGG | 0.426992 | 7_4:-58536833 | None:intergenic |
| AGGTGGCCATTTCCAGTGTC+GGG | 0.436826 | 7_4:-58536080 | None:intergenic |
| TATGTCAAAATTCTCAGAAT+AGG | 0.439765 | 7_4:-58536183 | None:intergenic |
| GAAATGGCCACCTCGTGTTA+GGG | 0.440854 | 7_4:+58536090 | Msa1166440:CDS |
| CCAAGAGAACACGGTTCATA+AGG | 0.443420 | 7_4:+58536358 | Msa1166440:CDS |
| AAAGGATGAAGAGAAAATAG+AGG | 0.446167 | 7_4:+58536487 | Msa1166440:CDS |
| CAAATTTGTTGAAATCAAAT+GGG | 0.472942 | 7_4:-58536607 | None:intergenic |
| ACATATAACTGGGCAAGTAA+AGG | 0.477315 | 7_4:-58536834 | None:intergenic |
| TTTGATTTCAACAAATTTGG+AGG | 0.477478 | 7_4:+58536611 | Msa1166440:CDS |
| GTGAAACCCGACACTGGAAA+TGG | 0.478333 | 7_4:+58536074 | Msa1166440:CDS |
| GGGAGAGAATGTGGCACAAA+AGG | 0.479177 | 7_4:+58536451 | Msa1166440:CDS |
| TGATACTTAGCTGAAGCAAA+AGG | 0.492521 | 7_4:-58536119 | None:intergenic |
| AAAGGAAGAGCTCAAGCAAA+AGG | 0.498722 | 7_4:+58536469 | Msa1166440:CDS |
| CTGTGTTCTGAAACAAATAG+TGG | 0.524669 | 7_4:-58533677 | None:intergenic |
| ATCAACAATCAAATTGGTGG+TGG | 0.550199 | 7_4:+58534209 | Msa1166440:CDS |
| GAGGTGGCCATTTCCAGTGT+CGG | 0.550744 | 7_4:-58536081 | None:intergenic |
| GATAGAGTGGATTGAAGCCA+AGG | 0.551806 | 7_4:-58534268 | None:intergenic |
| AGAATCAACAATCAAATTGG+TGG | 0.553611 | 7_4:+58534206 | Msa1166440:CDS |
| ACAATACTAAACGTTCCCCT+TGG | 0.557820 | 7_4:+58534251 | Msa1166440:CDS |
| GTGATGAAGTAATGAAGTTG+AGG | 0.566510 | 7_4:+58536408 | Msa1166440:CDS |
| AAATGGCCACCTCGTGTTAG+GGG | 0.566620 | 7_4:+58536091 | Msa1166440:CDS |
| GCGACCCGAACTTGTTAGCA+TGG | 0.568348 | 7_4:+58536001 | Msa1166440:CDS |
| AGTGTTGAACTCTCTAGATG+TGG | 0.571608 | 7_4:+58536680 | Msa1166440:CDS |
| AAAACTAAGGGGAGAGAATG+TGG | 0.572522 | 7_4:+58536442 | Msa1166440:CDS |
| TGATGAAGTAATGAAGTTGA+GGG | 0.573233 | 7_4:+58536409 | Msa1166440:CDS |
| CAATTGGAATACATATAACT+GGG | 0.578349 | 7_4:-58536844 | None:intergenic |
| CAAACTATGAATCTAAGACT+AGG | 0.586512 | 7_4:-58536774 | None:intergenic |
| ATGCTCGGGATCATCAACTT+CGG | 0.586706 | 7_4:-58536222 | None:intergenic |
| GATCAAGTGAAACCCGACAC+TGG | 0.592815 | 7_4:+58536068 | Msa1166440:CDS |
| ACATCTAGAGAGTTCAACAC+TGG | 0.598480 | 7_4:-58536678 | None:intergenic |
| GAAAATAAGCCAAGAGAACA+CGG | 0.599830 | 7_4:+58536349 | Msa1166440:CDS |
| ATAATGCATACCAGATAGAG+TGG | 0.603675 | 7_4:-58534281 | None:intergenic |
| AATTGTTCAATGGAAATCCA+AGG | 0.606931 | 7_4:+58536648 | Msa1166440:CDS |
| CTATCGAACACACCGCTCGT+TGG | 0.607247 | 7_4:+58536034 | Msa1166440:CDS |
| AATGGCCACCTCGTGTTAGG+GGG | 0.618948 | 7_4:+58536092 | Msa1166440:CDS |
| TTCCCTCTGAGTTCCTCGAG+TGG | 0.620220 | 7_4:+58533643 | Msa1166440:five_prime_UTR |
| GTCCACTCGAGGAACTCAGA+GGG | 0.633492 | 7_4:-58533645 | None:intergenic |
| CACACCGCTCGTTGGCCGAG+CGG | 0.633513 | 7_4:+58536042 | Msa1166440:CDS |
| ATAGAGTGGATTGAAGCCAA+GGG | 0.641627 | 7_4:-58534267 | None:intergenic |
| AAATTGGTGTGAGATTAGAG+TGG | 0.644869 | 7_4:-58533706 | None:intergenic |
| CATACCGCTCGGCCAACGAG+CGG | 0.650245 | 7_4:-58536046 | None:intergenic |
| AGAAGAGCGAGTTTCGTCTG+TGG | 0.651278 | 7_4:+58536286 | Msa1166440:CDS |
| GGTGGAGTAGCGTCCACTCG+AGG | 0.651866 | 7_4:-58533656 | None:intergenic |
| TGTTCTGAAACAAATAGTGG+TGG | 0.655169 | 7_4:-58533674 | None:intergenic |
| TTTCACTTGATCATACCGCT+CGG | 0.662652 | 7_4:-58536057 | None:intergenic |
| TACATAAACAGGGTTTAAGG+TGG | 0.663526 | 7_4:-58536912 | None:intergenic |
| CATCTAGAGAGTTCAACACT+GGG | 0.664020 | 7_4:-58536677 | None:intergenic |
| TTTGAAAGAATACATAAACA+GGG | 0.664101 | 7_4:-58536922 | None:intergenic |
| CTGTCAACGACGAAGTGATG+AGG | 0.676143 | 7_4:+58536309 | Msa1166440:CDS |
| CGTCCACTCGAGGAACTCAG+AGG | 0.676725 | 7_4:-58533646 | None:intergenic |
| GCATGTAACATACATAAACA+AGG | 0.694442 | 7_4:-58536950 | None:intergenic |
| TAGAGTGGATTGAAGCCAAG+GGG | 0.710125 | 7_4:-58534266 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATTATAAAATTTATTT+TGG | + | chr7_4:58535621-58535640 | Msa1166440:intron | 0.0% |
| !!! | ATCATAAAATTGATTTATTT+TGG | - | chr7_4:58535746-58535765 | None:intergenic | 10.0% |
| !! | AATTAAAAAATTGTAACAAT+TGG | - | chr7_4:58536863-58536882 | None:intergenic | 10.0% |
| !! | GTGTTTATCTTAATAATAAT+CGG | + | chr7_4:58533948-58533967 | Msa1166440:intron | 15.0% |
| !!! | TTTTTGTTGTTTAACATATA+GGG | + | chr7_4:58534110-58534129 | Msa1166440:intron | 15.0% |
| !!! | TTTATTTTGATAACTACTAA+CGG | - | chr7_4:58534572-58534591 | None:intergenic | 15.0% |
| !!! | TTTTTCCATTTGTTATAATT+TGG | + | chr7_4:58535360-58535379 | Msa1166440:intron | 15.0% |
| !! | AAAAAAAAAAAAAAAGTGGT+GGG | - | chr7_4:58535440-58535459 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAAAAAGTGG+TGG | - | chr7_4:58535441-58535460 | None:intergenic | 15.0% |
| !! | GACAAAAAAAAAAAAAAAAG+TGG | - | chr7_4:58535444-58535463 | None:intergenic | 15.0% |
| !!! | AGTGTTAAAAAGAGTATTTA+TGG | + | chr7_4:58533614-58533633 | Msa1166440:five_prime_UTR | 20.0% |
| !! | TAAAAACAAAGAAGGAAAAT+GGG | - | chr7_4:58533749-58533768 | None:intergenic | 20.0% |
| !! | ATGGAAATAAAAAGAAGAAA+GGG | - | chr7_4:58533861-58533880 | None:intergenic | 20.0% |
| !!! | TTCTTTTTATTTCCATCTTT+CGG | + | chr7_4:58533865-58533884 | Msa1166440:intron | 20.0% |
| !!! | CTTTTTGTTGTTTAACATAT+AGG | + | chr7_4:58534109-58534128 | Msa1166440:intron | 20.0% |
| !! | GTAGTTATCAAAATAAACTT+AGG | + | chr7_4:58534575-58534594 | Msa1166440:intron | 20.0% |
| !! | TTATCAAAATAAACTTAGGT+AGG | + | chr7_4:58534579-58534598 | Msa1166440:intron | 20.0% |
| !!! | AATTATTGTGTTGATAGAAA+AGG | + | chr7_4:58534803-58534822 | Msa1166440:intron | 20.0% |
| !!! | AAATAATGTGTTGATACAAA+AGG | + | chr7_4:58534841-58534860 | Msa1166440:intron | 20.0% |
| !! | CAAATGGAAAAAGTTATAAA+TGG | - | chr7_4:58535484-58535503 | None:intergenic | 20.0% |
| !! | GACACATAAAAAAATAATGA+TGG | + | chr7_4:58535392-58535411 | Msa1166440:intron | 20.0% |
| !! | ACATAAAAAAATAATGATGG+TGG | + | chr7_4:58535395-58535414 | Msa1166440:intron | 20.0% |
| !! | CATAAAAAAATAATGATGGT+GGG | + | chr7_4:58535396-58535415 | Msa1166440:intron | 20.0% |
| !! | CAAATGGAAAAAGTTATAAA+TGG | + | chr7_4:58535484-58535503 | Msa1166440:intron | 20.0% |
| !! | ATAATTGCAAGATTATTTCA+AGG | - | chr7_4:58535543-58535562 | None:intergenic | 20.0% |
| !! | GTGTAAAAAAAATTACATTG+AGG | - | chr7_4:58535573-58535592 | None:intergenic | 20.0% |
| !! | TTAAGTTAAAATTCACTTTG+TGG | + | chr7_4:58535677-58535696 | Msa1166440:intron | 20.0% |
| !!! | CAAATTTGTTGAAATCAAAT+GGG | - | chr7_4:58536610-58536629 | None:intergenic | 20.0% |
| !!! | TTTTCTATGAAATTGTTCAA+TGG | + | chr7_4:58536638-58536657 | Msa1166440:CDS | 20.0% |
| !! | TTATACATAACTATGCTATT+TGG | - | chr7_4:58536718-58536737 | None:intergenic | 20.0% |
| !!! | TTTTTAATTCTTTATGCATG+TGG | + | chr7_4:58536874-58536893 | Msa1166440:three_prime_UTR | 20.0% |
| !! | TTTGAAAGAATACATAAACA+GGG | - | chr7_4:58536925-58536944 | None:intergenic | 20.0% |
| !!! | TTTTGAAAGAATACATAAAC+AGG | - | chr7_4:58536926-58536945 | None:intergenic | 20.0% |
| ! | ATGAACGTACTTGATTAAAT+TGG | - | chr7_4:58533725-58533744 | None:intergenic | 25.0% |
| ! | GTAAAAACAAAGAAGGAAAA+TGG | - | chr7_4:58533750-58533769 | None:intergenic | 25.0% |
| ! | AACGAATGTAAAAACAAAGA+AGG | - | chr7_4:58533757-58533776 | None:intergenic | 25.0% |
| ! | AAGTTACTAAAAATGAGTGA+TGG | - | chr7_4:58533838-58533857 | None:intergenic | 25.0% |
| ! | GATGGAAATAAAAAGAAGAA+AGG | - | chr7_4:58533862-58533881 | None:intergenic | 25.0% |
| !! | TTGTTTAACATATAGGGTTT+TGG | + | chr7_4:58534116-58534135 | Msa1166440:intron | 25.0% |
| !! | TGTTTAACATATAGGGTTTT+GGG | + | chr7_4:58534117-58534136 | Msa1166440:intron | 25.0% |
| ! | ACAAGAATCAACAATCAAAT+TGG | + | chr7_4:58534203-58534222 | Msa1166440:CDS | 25.0% |
| !!! | AAATTGTTTTTCATGCCTTT+GGG | + | chr7_4:58534383-58534402 | Msa1166440:intron | 25.0% |
| ! | TAAAAATGCAAAGACAGATA+CGG | - | chr7_4:58534523-58534542 | None:intergenic | 25.0% |
| ! | TATTAAGAGAGTAGATTAGA+TGG | + | chr7_4:58534613-58534632 | Msa1166440:intron | 25.0% |
| !! | CAACTTTTATTCCACTAATT+GGG | - | chr7_4:58534755-58534774 | None:intergenic | 25.0% |
| ! | TCTCTCCAAATTATAACAAA+TGG | - | chr7_4:58535368-58535387 | None:intergenic | 25.0% |
| !! | GGTTTAACTTTAATCATAAC+AGG | - | chr7_4:58535522-58535541 | None:intergenic | 25.0% |
| ! | AACATGCACTTGTATATATT+TGG | + | chr7_4:58535800-58535819 | Msa1166440:intron | 25.0% |
| ! | TATGTCAAAATTCTCAGAAT+AGG | - | chr7_4:58536186-58536205 | None:intergenic | 25.0% |
| ! | GGAAGAAATAGAAAAACTAA+GGG | + | chr7_4:58536430-58536449 | Msa1166440:CDS | 25.0% |
| ! | GAAGAAATAGAAAAACTAAG+GGG | + | chr7_4:58536431-58536450 | Msa1166440:CDS | 25.0% |
| !!! | CCAAATTTGTTGAAATCAAA+TGG | - | chr7_4:58536611-58536630 | None:intergenic | 25.0% |
| !! | CCATTTGATTTCAACAAATT+TGG | + | chr7_4:58536608-58536627 | Msa1166440:CDS | 25.0% |
| !! | TTTGATTTCAACAAATTTGG+AGG | + | chr7_4:58536611-58536630 | Msa1166440:CDS | 25.0% |
| ! | CAATTGGAATACATATAACT+GGG | - | chr7_4:58536847-58536866 | None:intergenic | 25.0% |
| ! | ACAATTGGAATACATATAAC+TGG | - | chr7_4:58536848-58536867 | None:intergenic | 25.0% |
| GATTATTATGAACCGAAAGA+TGG | - | chr7_4:58533880-58533899 | None:intergenic | 30.0% | |
| !! | ATCTAGTCTTGTTGAAATGA+CGG | + | chr7_4:58533897-58533916 | Msa1166440:intron | 30.0% |
| TTGTAACGACAAGATAAGAT+TGG | - | chr7_4:58534037-58534056 | None:intergenic | 30.0% | |
| ! | GTTTAACATATAGGGTTTTG+GGG | + | chr7_4:58534118-58534137 | Msa1166440:intron | 30.0% |
| !!! | TTCGTCACTATTTTTTTGCT+TGG | - | chr7_4:58534148-58534167 | None:intergenic | 30.0% |
| GAAGAAGAAGAAGAAAAAGA+TGG | + | chr7_4:58534168-58534187 | Msa1166440:exon | 30.0% | |
| AGAATCAACAATCAAATTGG+TGG | + | chr7_4:58534206-58534225 | Msa1166440:CDS | 30.0% | |
| CAACGATGCTTTAATAATTC+AGG | + | chr7_4:58534360-58534379 | Msa1166440:intron | 30.0% | |
| !! | GAAATTGTTTTTCATGCCTT+TGG | + | chr7_4:58534382-58534401 | Msa1166440:intron | 30.0% |
| !! | ACTACTAACGGATCTATTTT+GGG | - | chr7_4:58534560-58534579 | None:intergenic | 30.0% |
| !! | AACTACTAACGGATCTATTT+TGG | - | chr7_4:58534561-58534580 | None:intergenic | 30.0% |
| TCAAAATAAACTTAGGTAGG+TGG | + | chr7_4:58534582-58534601 | Msa1166440:intron | 30.0% | |
| ! | CCAACTTTTATTCCACTAAT+TGG | - | chr7_4:58534756-58534775 | None:intergenic | 30.0% |
| CCAATTAGTGGAATAAAAGT+TGG | + | chr7_4:58534753-58534772 | Msa1166440:intron | 30.0% | |
| ! | TATTGTGTTGATAGAAAAGG+AGG | + | chr7_4:58534806-58534825 | Msa1166440:intron | 30.0% |
| TGTTGATACAAAAGGTCAAA+AGG | + | chr7_4:58534849-58534868 | Msa1166440:intron | 30.0% | |
| AACAGTCAAACAAATCACAA+CGG | - | chr7_4:58534885-58534904 | None:intergenic | 30.0% | |
| AAATGCATAAGACAAAAGGT+GGG | - | chr7_4:58534930-58534949 | None:intergenic | 30.0% | |
| TAAATGCATAAGACAAAAGG+TGG | - | chr7_4:58534931-58534950 | None:intergenic | 30.0% | |
| AAAATCAATTGTTGCTAGCT+AGG | - | chr7_4:58535201-58535220 | None:intergenic | 30.0% | |
| ! | ACAGTGTAGAACTTTTTACA+CGG | - | chr7_4:58535252-58535271 | None:intergenic | 30.0% |
| TCTCTCTAAATTGCAACAAA+TGG | + | chr7_4:58535468-58535487 | Msa1166440:intron | 30.0% | |
| GGAAAAAGTTATAAATGGAG+AGG | + | chr7_4:58535489-58535508 | Msa1166440:intron | 30.0% | |
| !!! | TTGGCACATTTTTGAGTATT+CGG | - | chr7_4:58535727-58535746 | None:intergenic | 30.0% |
| GAATACACTTCTGATAGTAA+AGG | - | chr7_4:58535779-58535798 | None:intergenic | 30.0% | |
| TGGCACAAATAAAAAGATTC+TGG | - | chr7_4:58535830-58535849 | None:intergenic | 30.0% | |
| TGATGAAGTAATGAAGTTGA+GGG | + | chr7_4:58536409-58536428 | Msa1166440:CDS | 30.0% | |
| GGGAAGAAATAGAAAAACTA+AGG | + | chr7_4:58536429-58536448 | Msa1166440:CDS | 30.0% | |
| AAAGGATGAAGAGAAAATAG+AGG | + | chr7_4:58536487-58536506 | Msa1166440:CDS | 30.0% | |
| AATTGTTCAATGGAAATCCA+AGG | + | chr7_4:58536648-58536667 | Msa1166440:CDS | 30.0% | |
| ! | CAAACTATGAATCTAAGACT+AGG | - | chr7_4:58536777-58536796 | None:intergenic | 30.0% |
| GAATACATAAACAGGGTTTA+AGG | - | chr7_4:58536918-58536937 | None:intergenic | 30.0% | |
| GCATGTAACATACATAAACA+AGG | - | chr7_4:58536953-58536972 | None:intergenic | 30.0% | |
| ! | TGCTACATTGATGTCATTTA+TGG | + | chr7_4:58536970-58536989 | Msa1166440:three_prime_UTR | 30.0% |
| !! | TGTTCTGAAACAAATAGTGG+TGG | - | chr7_4:58533677-58533696 | None:intergenic | 35.0% |
| !! | CTGTGTTCTGAAACAAATAG+TGG | - | chr7_4:58533680-58533699 | None:intergenic | 35.0% |
| AAATTGGTGTGAGATTAGAG+TGG | - | chr7_4:58533709-58533728 | None:intergenic | 35.0% | |
| !! | ATGAGTGATGGATTAGAAGA+AGG | - | chr7_4:58533826-58533845 | None:intergenic | 35.0% |
| !! | TCTAGTCTTGTTGAAATGAC+GGG | + | chr7_4:58533898-58533917 | Msa1166440:intron | 35.0% |
| AATGTCACAGAACAGAACAA+GGG | - | chr7_4:58533928-58533947 | None:intergenic | 35.0% | |
| AAGAAGAAGAAAAAGATGGC+TGG | + | chr7_4:58534172-58534191 | Msa1166440:exon | 35.0% | |
| ATCAACAATCAAATTGGTGG+TGG | + | chr7_4:58534209-58534228 | Msa1166440:CDS | 35.0% | |
| ATAATGCATACCAGATAGAG+TGG | - | chr7_4:58534284-58534303 | None:intergenic | 35.0% | |
| AAACAAACGTTCACGCATTT+GGG | - | chr7_4:58534483-58534502 | None:intergenic | 35.0% | |
| !! | TACTAACGGATCTATTTTGG+GGG | - | chr7_4:58534558-58534577 | None:intergenic | 35.0% |
| !! | CTACTAACGGATCTATTTTG+GGG | - | chr7_4:58534559-58534578 | None:intergenic | 35.0% |
| TAAGAGAGTAGATTAGATGG+AGG | + | chr7_4:58534616-58534635 | Msa1166440:intron | 35.0% | |
| ATGTAGTCAATCCCAATTAG+TGG | + | chr7_4:58534741-58534760 | Msa1166440:intron | 35.0% | |
| ACAAAAGGTCAAAAGGTTGT+AGG | + | chr7_4:58534856-58534875 | Msa1166440:intron | 35.0% | |
| GGCTAAATGCATAAGACAAA+AGG | - | chr7_4:58534934-58534953 | None:intergenic | 35.0% | |
| !! | AACCAAATAAAGGTGTCCAA+CGG | - | chr7_4:58534955-58534974 | None:intergenic | 35.0% |
| AGTCTTTGTATGCAAAAGTC+CGG | + | chr7_4:58534987-58535006 | Msa1166440:intron | 35.0% | |
| CTATAAATACCCTTTAGACC+CGG | - | chr7_4:58535038-58535057 | None:intergenic | 35.0% | |
| !! | GGTCTAAAGGGTATTTATAG+AGG | + | chr7_4:58535038-58535057 | Msa1166440:intron | 35.0% |
| !!! | TGGCACATTTTTGAGTATTC+GGG | - | chr7_4:58535726-58535745 | None:intergenic | 35.0% |
| GCCACATGAAAGTTGTATTA+CGG | + | chr7_4:58535846-58535865 | Msa1166440:intron | 35.0% | |
| TCCGTAATACAACTTTCATG+TGG | - | chr7_4:58535850-58535869 | None:intergenic | 35.0% | |
| TTCAACCATGCTAACAAGTT+CGG | - | chr7_4:58536009-58536028 | None:intergenic | 35.0% | |
| TGATACTTAGCTGAAGCAAA+AGG | - | chr7_4:58536122-58536141 | None:intergenic | 35.0% | |
| ! | TTTTGACATAGACGAGTCTA+TGG | + | chr7_4:58536196-58536215 | Msa1166440:CDS | 35.0% |
| GAAAATAAGCCAAGAGAACA+CGG | + | chr7_4:58536349-58536368 | Msa1166440:CDS | 35.0% | |
| GTGATGAAGTAATGAAGTTG+AGG | + | chr7_4:58536408-58536427 | Msa1166440:CDS | 35.0% | |
| CATATAACTGGGCAAGTAAA+GGG | - | chr7_4:58536836-58536855 | None:intergenic | 35.0% | |
| ACATATAACTGGGCAAGTAA+AGG | - | chr7_4:58536837-58536856 | None:intergenic | 35.0% | |
| TACATAAACAGGGTTTAAGG+TGG | - | chr7_4:58536915-58536934 | None:intergenic | 35.0% | |
| !! | GTGATGGATTAGAAGAAGGA+GGG | - | chr7_4:58533822-58533841 | None:intergenic | 40.0% |
| !! | AGTGATGGATTAGAAGAAGG+AGG | - | chr7_4:58533823-58533842 | None:intergenic | 40.0% |
| CAATGTCACAGAACAGAACA+AGG | - | chr7_4:58533929-58533948 | None:intergenic | 40.0% | |
| ACAATACTAAACGTTCCCCT+TGG | + | chr7_4:58534251-58534270 | Msa1166440:CDS | 40.0% | |
| !! | ATAGAGTGGATTGAAGCCAA+GGG | - | chr7_4:58534270-58534289 | None:intergenic | 40.0% |
| GAAACAAACGTTCACGCATT+TGG | - | chr7_4:58534484-58534503 | None:intergenic | 40.0% | |
| TGATAGAAAAGGAGGAATGC+TGG | + | chr7_4:58534814-58534833 | Msa1166440:intron | 40.0% | |
| TGTCTTATGCATTTAGCCGT+TGG | + | chr7_4:58534936-58534955 | Msa1166440:intron | 40.0% | |
| GTCACGCTGAAACCAAATAA+AGG | - | chr7_4:58534965-58534984 | None:intergenic | 40.0% | |
| ! | GTGTAGAACTTTTTACACGG+AGG | - | chr7_4:58535249-58535268 | None:intergenic | 40.0% |
| GTTCAGCTCTGCAATAAACA+TGG | - | chr7_4:58535901-58535920 | None:intergenic | 40.0% | |
| TCAACCATGCTAACAAGTTC+GGG | - | chr7_4:58536008-58536027 | None:intergenic | 40.0% | |
| TTTCACTTGATCATACCGCT+CGG | - | chr7_4:58536060-58536079 | None:intergenic | 40.0% | |
| ! | TTGATGAGTTTTGCAGACAC+TGG | + | chr7_4:58536152-58536171 | Msa1166440:CDS | 40.0% |
| ! | ACCTCTTTTTCTTCATGCTC+GGG | - | chr7_4:58536239-58536258 | None:intergenic | 40.0% |
| ! | CACCTCTTTTTCTTCATGCT+CGG | - | chr7_4:58536240-58536259 | None:intergenic | 40.0% |
| AAAACTAAGGGGAGAGAATG+TGG | + | chr7_4:58536442-58536461 | Msa1166440:CDS | 40.0% | |
| AAAGGAAGAGCTCAAGCAAA+AGG | + | chr7_4:58536469-58536488 | Msa1166440:CDS | 40.0% | |
| CTAAAGAGTCCGCAAAGAAA+TGG | + | chr7_4:58536579-58536598 | Msa1166440:CDS | 40.0% | |
| TGGGAACTTCCATTTCTTTG+CGG | - | chr7_4:58536591-58536610 | None:intergenic | 40.0% | |
| CATCTAGAGAGTTCAACACT+GGG | - | chr7_4:58536680-58536699 | None:intergenic | 40.0% | |
| ACATCTAGAGAGTTCAACAC+TGG | - | chr7_4:58536681-58536700 | None:intergenic | 40.0% | |
| ! | AGTGTTGAACTCTCTAGATG+TGG | + | chr7_4:58536680-58536699 | Msa1166440:CDS | 40.0% |
| ! | TGGATTAGAAGAAGGAGGGA+AGG | - | chr7_4:58533818-58533837 | None:intergenic | 45.0% |
| !! | TAGAGTGGATTGAAGCCAAG+GGG | - | chr7_4:58534269-58534288 | None:intergenic | 45.0% |
| !! | GATAGAGTGGATTGAAGCCA+AGG | - | chr7_4:58534271-58534290 | None:intergenic | 45.0% |
| TGGCTTCAATCCACTCTATC+TGG | + | chr7_4:58534271-58534290 | Msa1166440:CDS | 45.0% | |
| !! | TCATGCCTTTGGGACATTGA+TGG | + | chr7_4:58534393-58534412 | Msa1166440:intron | 45.0% |
| ACCAACCATCAATGTCCCAA+AGG | - | chr7_4:58534401-58534420 | None:intergenic | 45.0% | |
| AGATACGGATTCTCTCTGCT+CGG | - | chr7_4:58534508-58534527 | None:intergenic | 45.0% | |
| AGCCGTTGGACACCTTTATT+TGG | + | chr7_4:58534950-58534969 | Msa1166440:intron | 45.0% | |
| TAAATACCCTTTAGACCCGG+AGG | - | chr7_4:58535035-58535054 | None:intergenic | 45.0% | |
| !! | TTGGCTCAGTTGGTAAGGAA+CGG | - | chr7_4:58535142-58535161 | None:intergenic | 45.0% |
| ACTAAGTCACCAACACACGT+TGG | - | chr7_4:58535161-58535180 | None:intergenic | 45.0% | |
| ! | CATCTCTGCACGTTTTGCAA+AGG | - | chr7_4:58535970-58535989 | None:intergenic | 45.0% |
| ATGCTCGGGATCATCAACTT+CGG | - | chr7_4:58536225-58536244 | None:intergenic | 45.0% | |
| TCCCGAGCATGAAGAAAAAG+AGG | + | chr7_4:58536235-58536254 | Msa1166440:CDS | 45.0% | |
| CGAGCATGAAGAAAAAGAGG+TGG | + | chr7_4:58536238-58536257 | Msa1166440:CDS | 45.0% | |
| CCTTATGAACCGTGTTCTCT+TGG | - | chr7_4:58536361-58536380 | None:intergenic | 45.0% | |
| CCAAGAGAACACGGTTCATA+AGG | + | chr7_4:58536358-58536377 | Msa1166440:CDS | 45.0% | |
| ! | CGGTGCGTGTTGTTACTTGA+CGG | + | chr7_4:58533968-58533987 | Msa1166440:intron | 50.0% |
| !! | GCCTTTGGGACATTGATGGT+TGG | + | chr7_4:58534397-58534416 | Msa1166440:intron | 50.0% |
| ATACGGATTCTCTCTGCTCG+GGG | - | chr7_4:58534506-58534525 | None:intergenic | 50.0% | |
| GATACGGATTCTCTCTGCTC+GGG | - | chr7_4:58534507-58534526 | None:intergenic | 50.0% | |
| CAAAAGTCCGGTCACCATCA+GGG | + | chr7_4:58534999-58535018 | Msa1166440:intron | 50.0% | |
| CGAACACACAACCTTCTGCA+AGG | + | chr7_4:58535109-58535128 | Msa1166440:intron | 50.0% | |
| CACAACCTTCTGCAAGGAAG+TGG | + | chr7_4:58535115-58535134 | Msa1166440:intron | 50.0% | |
| !! | ACACGTTGGCTCAGTTGGTA+AGG | - | chr7_4:58535147-58535166 | None:intergenic | 50.0% |
| GGTGGGATCCACTTAGTGAT+AGG | + | chr7_4:58535413-58535432 | Msa1166440:intron | 50.0% | |
| ! | TGGTGGGTCCTATCACTAAG+TGG | - | chr7_4:58535424-58535443 | None:intergenic | 50.0% |
| GATCAAGTGAAACCCGACAC+TGG | + | chr7_4:58536068-58536087 | Msa1166440:CDS | 50.0% | |
| GTGAAACCCGACACTGGAAA+TGG | + | chr7_4:58536074-58536093 | Msa1166440:CDS | 50.0% | |
| GAAATGGCCACCTCGTGTTA+GGG | + | chr7_4:58536090-58536109 | Msa1166440:CDS | 50.0% | |
| AAATGGCCACCTCGTGTTAG+GGG | + | chr7_4:58536091-58536110 | Msa1166440:CDS | 50.0% | |
| AGAAGAGCGAGTTTCGTCTG+TGG | + | chr7_4:58536286-58536305 | Msa1166440:CDS | 50.0% | |
| CTGTCAACGACGAAGTGATG+AGG | + | chr7_4:58536309-58536328 | Msa1166440:CDS | 50.0% | |
| GGGAGAGAATGTGGCACAAA+AGG | + | chr7_4:58536451-58536470 | Msa1166440:CDS | 50.0% | |
| ! | TCAACACTGGGCTGATTCCT+TGG | - | chr7_4:58536668-58536687 | None:intergenic | 50.0% |
| TTCCCTCTGAGTTCCTCGAG+TGG | + | chr7_4:58533643-58533662 | Msa1166440:five_prime_UTR | 55.0% | |
| GTCCACTCGAGGAACTCAGA+GGG | - | chr7_4:58533648-58533667 | None:intergenic | 55.0% | |
| GCAAAAGTCCGGTCACCATC+AGG | + | chr7_4:58534998-58535017 | Msa1166440:intron | 55.0% | |
| TCCGGTCACCATCAGGGTTA+GGG | + | chr7_4:58535005-58535024 | Msa1166440:intron | 55.0% | |
| !! | GATGTGAGGGCAGTGTTGGT+GGG | - | chr7_4:58535077-58535096 | None:intergenic | 55.0% |
| CACCAACACTGCCCTCACAT+CGG | + | chr7_4:58535076-58535095 | Msa1166440:intron | 55.0% | |
| GATTCCCTCTGCCGATGTGA+GGG | - | chr7_4:58535090-58535109 | None:intergenic | 55.0% | |
| ACGGACCACTTCCTTGCAGA+AGG | - | chr7_4:58535123-58535142 | None:intergenic | 55.0% | |
| !! | CCAACACACGTTGGCTCAGT+TGG | - | chr7_4:58535152-58535171 | None:intergenic | 55.0% |
| CCAACTGAGCCAACGTGTGT+TGG | + | chr7_4:58535149-58535168 | Msa1166440:intron | 55.0% | |
| !! | GCGACCCGAACTTGTTAGCA+TGG | + | chr7_4:58536001-58536020 | Msa1166440:CDS | 55.0% |
| CTATCGAACACACCGCTCGT+TGG | + | chr7_4:58536034-58536053 | Msa1166440:CDS | 55.0% | |
| AGGTGGCCATTTCCAGTGTC+GGG | - | chr7_4:58536083-58536102 | None:intergenic | 55.0% | |
| GAGGTGGCCATTTCCAGTGT+CGG | - | chr7_4:58536084-58536103 | None:intergenic | 55.0% | |
| GGAAATGGCCACCTCGTGTT+AGG | + | chr7_4:58536089-58536108 | Msa1166440:CDS | 55.0% | |
| AATGGCCACCTCGTGTTAGG+GGG | + | chr7_4:58536092-58536111 | Msa1166440:CDS | 55.0% | |
| CGTCCACTCGAGGAACTCAG+AGG | - | chr7_4:58533649-58533668 | None:intergenic | 60.0% | |
| GTCCGGTCACCATCAGGGTT+AGG | + | chr7_4:58535004-58535023 | Msa1166440:intron | 60.0% | |
| ! | GCCCTAACCCTGATGGTGAC+CGG | - | chr7_4:58535009-58535028 | None:intergenic | 60.0% |
| ! | CGATGTGAGGGCAGTGTTGG+TGG | - | chr7_4:58535078-58535097 | None:intergenic | 60.0% |
| TGCCGATGTGAGGGCAGTGT+TGG | - | chr7_4:58535081-58535100 | None:intergenic | 60.0% | |
| ACTGCCCTCACATCGGCAGA+GGG | + | chr7_4:58535083-58535102 | Msa1166440:intron | 60.0% | |
| CGATTCCCTCTGCCGATGTG+AGG | - | chr7_4:58535091-58535110 | None:intergenic | 60.0% | |
| AAGGCGATCCCCCTAACACG+AGG | - | chr7_4:58536103-58536122 | None:intergenic | 60.0% | |
| GGTGGAGTAGCGTCCACTCG+AGG | - | chr7_4:58533659-58533678 | None:intergenic | 65.0% | |
| GAGGCGTGCCCTAACCCTGA+TGG | - | chr7_4:58535016-58535035 | None:intergenic | 65.0% | |
| TCAGGGTTAGGGCACGCCTC+CGG | + | chr7_4:58535016-58535035 | Msa1166440:intron | 65.0% | |
| GGCACGCCTCCGGGTCTAAA+GGG | + | chr7_4:58535026-58535045 | Msa1166440:intron | 65.0% | |
| CACTGCCCTCACATCGGCAG+AGG | + | chr7_4:58535082-58535101 | Msa1166440:intron | 65.0% | |
| CATACCGCTCGGCCAACGAG+CGG | - | chr7_4:58536049-58536068 | None:intergenic | 65.0% | |
| GCGATCCCCCTAACACGAGG+TGG | - | chr7_4:58536100-58536119 | None:intergenic | 65.0% | |
| CAGGGTTAGGGCACGCCTCC+GGG | + | chr7_4:58535017-58535036 | Msa1166440:intron | 70.0% | |
| GGGCACGCCTCCGGGTCTAA+AGG | + | chr7_4:58535025-58535044 | Msa1166440:intron | 70.0% | |
| CACACCGCTCGTTGGCCGAG+CGG | + | chr7_4:58536042-58536061 | Msa1166440:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 58533606 | 58537004 | 58533606 | ID=Msa1166440;Name=Msa1166440 |
| chr7_4 | mRNA | 58533606 | 58537004 | 58533606 | ID=Msa1166440-mRNA-1;Parent=Msa1166440;Name=Msa1166440-mRNA-1;_AED=0.07;_eAED=0.07;_QI=185|1|1|1|0.5|0.33|3|277|306 |
| chr7_4 | exon | 58533606 | 58533734 | 58533606 | ID=Msa1166440-mRNA-1:exon:17944;Parent=Msa1166440-mRNA-1 |
| chr7_4 | exon | 58534131 | 58534292 | 58534131 | ID=Msa1166440-mRNA-1:exon:17945;Parent=Msa1166440-mRNA-1 |
| chr7_4 | exon | 58535913 | 58537004 | 58535913 | ID=Msa1166440-mRNA-1:exon:17946;Parent=Msa1166440-mRNA-1 |
| chr7_4 | five_prime_UTR | 58533606 | 58533734 | 58533606 | ID=Msa1166440-mRNA-1:five_prime_utr;Parent=Msa1166440-mRNA-1 |
| chr7_4 | five_prime_UTR | 58534131 | 58534186 | 58534131 | ID=Msa1166440-mRNA-1:five_prime_utr;Parent=Msa1166440-mRNA-1 |
| chr7_4 | CDS | 58534187 | 58534292 | 58534187 | ID=Msa1166440-mRNA-1:cds;Parent=Msa1166440-mRNA-1 |
| chr7_4 | CDS | 58535913 | 58536727 | 58535913 | ID=Msa1166440-mRNA-1:cds;Parent=Msa1166440-mRNA-1 |
| chr7_4 | three_prime_UTR | 58536728 | 58537004 | 58536728 | ID=Msa1166440-mRNA-1:three_prime_utr;Parent=Msa1166440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
