AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1041980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041980 MtrunA17_Chr7g0265361 98.765 648 7 1 1 647 1 648 0.0 1316
Msa1041980 MtrunA17_Chr1g0179691 78.884 663 113 4 6 647 2 658 0.0 1025
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041980 AT1G03910.1 76.740 589 132 2 62 647 86 672 0.0 931
Msa1041980 AT1G03910.2 71.406 633 132 3 62 647 86 716 0.0 910
Msa1041980 AT2G36815.2 51.546 97 33 2 269 364 17 100 5.60e-21 88.6
Msa1041980 AT2G36815.1 52.128 94 31 2 272 364 26 106 3.24e-20 86.7

Find 191 sgRNAs with CRISPR-Local

Find 471 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGGCTCCCATAGCTTTAA+AGG 0.146220 7_1:-79660295 None:intergenic
TGACTTTGCTTTGATCAAAA+TGG 0.168302 7_1:-79658297 None:intergenic
AGCTTCTTGATTCTCTCTAA+TGG 0.217152 7_1:-79659996 None:intergenic
CACCAACCCATGTGGAATAT+TGG 0.248519 7_1:+79658628 Msa1041980:CDS
TCGTATGGATAATAACAAAA+AGG 0.249074 7_1:+79661598 Msa1041980:three_prime_UTR
TCAAATATAGGCTTGTTTAA+AGG 0.267285 7_1:+79659698 Msa1041980:intron
ATTCTTATCGAGTATATTCT+AGG 0.269159 7_1:-79661467 None:intergenic
TTGTACCCTTGCACAATCTT+TGG 0.280919 7_1:-79660826 None:intergenic
TTTACCTTGAAGACCATATA+TGG 0.284103 7_1:-79658418 None:intergenic
CTCTCCTTGTGGTGTGTGAT+TGG 0.286802 7_1:+79659336 Msa1041980:CDS
GCTTCTTGATTCTCTCTAAT+GGG 0.293100 7_1:-79659995 None:intergenic
TACAGAGTTGGAAGCCTTAC+AGG 0.297377 7_1:+79659505 Msa1041980:CDS
AAATATTGGAGCAGGTTTAT+TGG 0.299548 7_1:+79660695 Msa1041980:intron
TTCCTCTTCTGTGATTGTTC+TGG 0.304361 7_1:-79655198 None:intergenic
CTTTCTCTATAGTGTAGTTC+GGG 0.307351 7_1:-79660891 None:intergenic
TCTCAATGGCTCTGATGATT+TGG 0.310949 7_1:+79658378 Msa1041980:CDS
GGTTTATCTTCATCCTCTAA+TGG 0.311251 7_1:-79659768 None:intergenic
TAACAACATCGCCAAGGGTT+AGG 0.311822 7_1:+79654995 Msa1041980:five_prime_UTR
AGAAATAAATGAACCATATA+TGG 0.332368 7_1:+79658405 Msa1041980:CDS
ACGTGCTCGAGCTGAGTTCC+AGG 0.339829 7_1:+79658166 Msa1041980:CDS
TCCAATGATTCTAATCCATT+TGG 0.349636 7_1:+79655395 Msa1041980:CDS
TTGAAATACTTTGGCTTCCT+TGG 0.351127 7_1:-79660736 None:intergenic
TGCACTAATTAACTAGTATA+TGG 0.353671 7_1:-79661426 None:intergenic
ACCGCCGATAATTTCATATC+AGG 0.373562 7_1:+79661186 Msa1041980:exon
GAGGATGGAGACGCAGTGTT+TGG 0.374545 7_1:+79660318 Msa1041980:CDS
CTTCTCAGCTTTAACAGAAA+AGG 0.376850 7_1:-79655662 None:intergenic
ACCAAATGGATTAGAATCAT+TGG 0.377470 7_1:-79655396 None:intergenic
TGAAGAGGACAAAGCTATAC+TGG 0.377597 7_1:+79660087 Msa1041980:CDS
TTTATCTTGTCTACAAGATC+AGG 0.386955 7_1:-79660865 None:intergenic
ACCAACCCATGTGGAATATT+GGG 0.388380 7_1:+79658629 Msa1041980:CDS
TCTTTCTCTATAGTGTAGTT+CGG 0.388508 7_1:-79660892 None:intergenic
TGCTCCTTTAGAATTTATCT+TGG 0.394381 7_1:-79661336 None:intergenic
AGTATAGCTTTGTCCTCTTC+AGG 0.395081 7_1:-79660085 None:intergenic
ACGTCTTGAGCAACCATTAG+AGG 0.398700 7_1:+79659755 Msa1041980:CDS
TGTTCAGCAAGCAGCTCAGC+AGG 0.403673 7_1:-79659422 None:intergenic
TCCGCATTGTAAACAAAGAA+TGG 0.405433 7_1:+79661081 Msa1041980:CDS
CAGCAAAGGTGGTTGAGTAC+TGG 0.408832 7_1:+79659558 Msa1041980:CDS
TGACTCAATGTGAGCCTGTA+AGG 0.412240 7_1:-79659519 None:intergenic
ATTGCCTGATATGAAATTAT+CGG 0.423857 7_1:-79661190 None:intergenic
TACGTGTCTTTCCATGTAAA+AGG 0.424095 7_1:-79659484 None:intergenic
TCTCCTTGTGGTGTGTGATT+GGG 0.426562 7_1:+79659337 Msa1041980:CDS
CCTTGCACAATCTTTGGAGG+TGG 0.426781 7_1:-79660820 None:intergenic
TTTAGATCAAATCACAATCA+TGG 0.427509 7_1:-79661381 None:intergenic
GTTGAAAGCCTTTAAAGCTA+TGG 0.428454 7_1:+79660287 Msa1041980:CDS
AGCACAACATGAAGAAGAAA+TGG 0.434364 7_1:+79657399 Msa1041980:CDS
TACCCTTGCACAATCTTTGG+AGG 0.435278 7_1:-79660823 None:intergenic
TGTCATGATCATAGTGAGTC+TGG 0.437642 7_1:-79660795 None:intergenic
TGATTCTCTCTAATGGGCTC+TGG 0.438807 7_1:-79659989 None:intergenic
AGCAAAGGTGGTTGAGTACT+GGG 0.442488 7_1:+79659559 Msa1041980:CDS
GAAAAGACAAGTAGAAAGGA+TGG 0.442901 7_1:+79655684 Msa1041980:CDS
AACAACATCGCCAAGGGTTA+GGG 0.445137 7_1:+79654996 Msa1041980:five_prime_UTR
TAGAGAAAGACGGCGGCAAT+GGG 0.445619 7_1:+79660905 Msa1041980:CDS
GATTGCGTGAAGGGCGTGCC+AGG 0.446615 7_1:+79658332 Msa1041980:CDS
GACGACAACGATAATAGAAC+TGG 0.446928 7_1:+79655158 Msa1041980:CDS
TGAACCATATATGGTCTTCA+AGG 0.450157 7_1:+79658414 Msa1041980:CDS
TGACGACATCAAAATGCATC+TGG 0.451814 7_1:+79658590 Msa1041980:CDS
TGAACACGGTTGAAATACTT+TGG 0.452374 7_1:-79660745 None:intergenic
AGACTTACTATATCTTCATA+TGG 0.456635 7_1:-79660961 None:intergenic
TGCTTGGTTAGGACATCAAT+TGG 0.460472 7_1:-79658355 None:intergenic
AAATGCATCTGGATCTTGAC+AGG 0.460556 7_1:+79658601 Msa1041980:CDS
ATATTTGTTCCACTCATATC+CGG 0.462283 7_1:-79660770 None:intergenic
GGAGACGCAGTGTTTGGATC+TGG 0.464689 7_1:+79660324 Msa1041980:CDS
CCGCATTGTAAACAAAGAAT+GGG 0.467266 7_1:+79661082 Msa1041980:CDS
AGAATTATTGCATATTCGTA+TGG 0.468144 7_1:+79661583 Msa1041980:three_prime_UTR
TGTAAAAGGTCCTTCACATC+TGG 0.469963 7_1:-79659470 None:intergenic
ATTAGAGGATGAAGATAAAC+CGG 0.473687 7_1:+79659770 Msa1041980:CDS
ATCAGAGCCATTGAGATGCT+TGG 0.474442 7_1:-79658371 None:intergenic
GGCATATACTGAGGAGGATG+AGG 0.476259 7_1:+79659821 Msa1041980:CDS
TACTGAGGAGGATGAGGAGG+AGG 0.476354 7_1:+79659827 Msa1041980:CDS
CATCTGAATCTCGGCGTGAC+CGG 0.477601 7_1:-79655124 None:intergenic
AATCTCGAGATGGGTCTCTC+CGG 0.478512 7_1:+79661487 Msa1041980:three_prime_UTR
AACTCTAAATTATCTTCAGA+TGG 0.479290 7_1:-79660267 None:intergenic
TGAGCTGCTTGCTGAACAAA+GGG 0.483674 7_1:+79659427 Msa1041980:CDS
TTTCCGGCGGTGGTCGGAGT+CGG 0.484022 7_1:-79655093 None:intergenic
GCGGAAACGTATGGCTGTAA+TGG 0.488174 7_1:+79660197 Msa1041980:CDS
TTGAGATTAGTATCACCAAA+TGG 0.494079 7_1:-79655410 None:intergenic
ACTTATAATAAAACCTGTGT+GGG 0.494617 7_1:+79654951 Msa1041980:five_prime_UTR
ATACCTTGGCCTTGTATATG+TGG 0.497718 7_1:-79659601 None:intergenic
ACAGCTTCCCTCAAATCAAA+AGG 0.499844 7_1:-79661236 None:intergenic
TTGAAGACGAATACAGTATC+GGG 0.502893 7_1:+79655368 Msa1041980:CDS
CTTGCACAATCTTTGGAGGT+GGG 0.503952 7_1:-79660819 None:intergenic
AAATTATCTTCAGATGGAGC+TGG 0.504991 7_1:-79660261 None:intergenic
AGAAGAAAAGACAAGTAGAA+AGG 0.506412 7_1:+79655680 Msa1041980:CDS
ATATATGGTACAGGGTTTGA+CGG 0.508336 7_1:+79658545 Msa1041980:intron
GATGAGGAGGAGGATGCTAA+AGG 0.508964 7_1:+79659837 Msa1041980:CDS
TTGAAAGCCTTTAAAGCTAT+GGG 0.509092 7_1:+79660288 Msa1041980:CDS
TATGAAATTATCGGCGGTAG+CGG 0.509701 7_1:-79661181 None:intergenic
GGTTAGGACATCAATTGGCC+TGG 0.512323 7_1:-79658350 None:intergenic
AGCCATTGAGATGCTTGGTT+AGG 0.515511 7_1:-79658366 None:intergenic
CTCTCCGGCGAGTGATACCT+AGG 0.516411 7_1:+79661502 Msa1041980:three_prime_UTR
TGAAGTGAGCCTCGATTCAC+AGG 0.516699 7_1:+79660350 Msa1041980:CDS
TCCTCAGTATATGCCTCCTC+AGG 0.516934 7_1:-79659813 None:intergenic
CAGAGATTAGATTGCGTGAA+GGG 0.520377 7_1:+79658323 Msa1041980:CDS
TCGAGCTGAGTTCCAGGACT+GGG 0.522136 7_1:+79658172 Msa1041980:CDS
CATTGTTTAACCCTAACCCT+TGG 0.524297 7_1:-79655006 None:intergenic
CTCGAGCTGAGTTCCAGGAC+TGG 0.526610 7_1:+79658171 Msa1041980:CDS
CTGAGCTGCTTGCTGAACAA+AGG 0.528929 7_1:+79659426 Msa1041980:CDS
GCTATGGGAGCCATGGAGGA+TGG 0.529591 7_1:+79660303 Msa1041980:CDS
GTCCTAACCAAGCATCTCAA+TGG 0.529933 7_1:+79658364 Msa1041980:CDS
CTTCATATGGTGGTCCTGCA+TGG 0.530669 7_1:-79660948 None:intergenic
GTTAATTAGTGCATTCCGTA+TGG 0.531288 7_1:+79661436 Msa1041980:three_prime_UTR
TGGGAATACTCTCACAAGAA+AGG 0.534055 7_1:+79661101 Msa1041980:CDS
ACTCCGACTCCGACCACCGC+CGG 0.534200 7_1:+79655090 Msa1041980:CDS
AGGATGCAATTGATCGAGCT+AGG 0.538391 7_1:+79659381 Msa1041980:CDS
GAAATTATCGGCGGTAGCGG+TGG 0.538663 7_1:-79661178 None:intergenic
ATAGAGAAAGACGGCGGCAA+TGG 0.539441 7_1:+79660904 Msa1041980:CDS
TTGAATCATCATCTGAATCT+CGG 0.539509 7_1:-79655133 None:intergenic
CGTATAGGAGCGGAAACGTA+TGG 0.539851 7_1:+79660188 Msa1041980:intron
CTTCACATCTGGCTCAACAC+TGG 0.541181 7_1:-79659459 None:intergenic
AGAGGAAATTTCACAGTACA+TGG 0.541595 7_1:+79655214 Msa1041980:CDS
GTGGCCAAGATAAATTCTAA+AGG 0.547320 7_1:+79661332 Msa1041980:three_prime_UTR
ATTGAAGACGAATACAGTAT+CGG 0.548388 7_1:+79655367 Msa1041980:CDS
TATTGGAGCAGGTTTATTGG+TGG 0.548422 7_1:+79660698 Msa1041980:intron
CAAGAAGCTGAAGATGAGGC+TGG 0.549453 7_1:+79660010 Msa1041980:CDS
AATACAGGCAGAAATTGAAA+AGG 0.549731 7_1:+79657342 Msa1041980:intron
TTAGATCAAATCACAATCAT+GGG 0.551398 7_1:-79661380 None:intergenic
TCATCATCATGCAACAGTTG+TGG 0.553991 7_1:-79660043 None:intergenic
AAAACACCTCCACATATACA+AGG 0.555906 7_1:+79659592 Msa1041980:CDS
TGGAAAGACACGTACAGAGT+TGG 0.555932 7_1:+79659493 Msa1041980:CDS
TGATACCTAGGGATGACGAT+AGG 0.558897 7_1:+79661514 Msa1041980:three_prime_UTR
TTCTAGGAAGGAACACCATA+CGG 0.559392 7_1:-79661451 None:intergenic
TGCATTATTAGATTCCATGC+AGG 0.559588 7_1:+79660934 Msa1041980:CDS
GAATCAAGAAGCTGAAGATG+AGG 0.559806 7_1:+79660006 Msa1041980:CDS
CAGTGTTGAGCCAGATGTGA+AGG 0.561664 7_1:+79659460 Msa1041980:CDS
GATAATTTCATATCAGGCAA+TGG 0.562061 7_1:+79661192 Msa1041980:exon
TTCCAGAACAATCACAGAAG+AGG 0.563012 7_1:+79655196 Msa1041980:CDS
ATTGAGTCAGAGATGCGTAC+TGG 0.566781 7_1:+79659533 Msa1041980:CDS
CACTGCGTCTCCATCCTCCA+TGG 0.573173 7_1:-79660313 None:intergenic
CAGATTAACAACATCGCCAA+GGG 0.573344 7_1:+79654990 Msa1041980:five_prime_UTR
GATACCTAGGGATGACGATA+GGG 0.575644 7_1:+79661515 Msa1041980:three_prime_UTR
AGATAAATTCTAAAGGAGCA+TGG 0.580247 7_1:+79661339 Msa1041980:three_prime_UTR
TTATCGAGTATATTCTAGGA+AGG 0.580417 7_1:-79661463 None:intergenic
ATCATGTCAAGAGCACGCTC+CGG 0.581483 7_1:-79659789 None:intergenic
ACTCGATAAGAATCTCGAGA+TGG 0.584204 7_1:+79661477 Msa1041980:three_prime_UTR
CTCGATAAGAATCTCGAGAT+GGG 0.584469 7_1:+79661478 Msa1041980:three_prime_UTR
CCACCTCCAAAGATTGTGCA+AGG 0.584490 7_1:+79660820 Msa1041980:CDS
GTTGCATGATGATGAAAATG+AGG 0.585801 7_1:+79660051 Msa1041980:CDS
CATCCCTAGGTATCACTCGC+CGG 0.586976 7_1:-79661506 None:intergenic
TCAGATTAACAACATCGCCA+AGG 0.587348 7_1:+79654989 Msa1041980:five_prime_UTR
TCCCAATATTCCACATGGGT+TGG 0.589582 7_1:-79658630 None:intergenic
CCCATTCTTTGTTTACAATG+CGG 0.589870 7_1:-79661082 None:intergenic
CTTTAAAGCTATGGGAGCCA+TGG 0.593812 7_1:+79660296 Msa1041980:CDS
ACTCATATCCGGTGTGAACA+CGG 0.594826 7_1:-79660759 None:intergenic
ATTGATCGAGCTAGGGTGCG+TGG 0.595446 7_1:+79659389 Msa1041980:CDS
AAAATCTACTGTTTGAAATG+TGG 0.597918 7_1:+79661313 Msa1041980:three_prime_UTR
GTCAGATGCAGAGTCATCAT+CGG 0.601881 7_1:-79655069 None:intergenic
AAAACGAATTCAGGAAGCAA+TGG 0.607367 7_1:+79660230 Msa1041980:CDS
GGATGCAATTGATCGAGCTA+GGG 0.616184 7_1:+79659382 Msa1041980:CDS
ATATACTGAGGAGGATGAGG+AGG 0.617133 7_1:+79659824 Msa1041980:CDS
CACTTATAATAAAACCTGTG+TGG 0.619395 7_1:+79654950 Msa1041980:five_prime_UTR
CTTCATGTAGGCTCTCCTTG+TGG 0.620002 7_1:+79659325 Msa1041980:intron
TCAATCGAATTTCCCCACAC+AGG 0.620333 7_1:-79654964 None:intergenic
GCTCCCAATCACACACCACA+AGG 0.625505 7_1:-79659340 None:intergenic
TTTAAATGCACATTCGAACG+TGG 0.625849 7_1:+79661125 Msa1041980:CDS
TAAAGCTATGGGAGCCATGG+AGG 0.627137 7_1:+79660299 Msa1041980:CDS
GCGTACTGGTACAGCAAAGG+TGG 0.627923 7_1:+79659547 Msa1041980:CDS
CTTACTATATCTTCATATGG+TGG 0.634403 7_1:-79660958 None:intergenic
ACCGCCGGAAAACTAGTCGC+CGG 0.636310 7_1:+79655105 Msa1041980:CDS
TCAGCAAGCAGCTCAGCAGG+AGG 0.636929 7_1:-79659419 None:intergenic
GTGTTCACACCGGATATGAG+TGG 0.640725 7_1:+79660761 Msa1041980:CDS
TCTCCGGCGAGTGATACCTA+GGG 0.641290 7_1:+79661503 Msa1041980:three_prime_UTR
ATTGAGCGCGATGTTACTCA+AGG 0.644189 7_1:+79655625 Msa1041980:CDS
GATGCGTACTGGTACAGCAA+AGG 0.649100 7_1:+79659544 Msa1041980:CDS
TCAGAGATTAGATTGCGTGA+AGG 0.649679 7_1:+79658322 Msa1041980:CDS
AAAATGATTCATCAGCAGAA+CGG 0.650693 7_1:-79659964 None:intergenic
TATTTCAACCGTGTTCACAC+CGG 0.650995 7_1:+79660751 Msa1041980:CDS
CCTCCACATATACAAGGCCA+AGG 0.652292 7_1:+79659598 Msa1041980:CDS
GGAAGCTATTGATCCTGAAG+AGG 0.658125 7_1:+79660072 Msa1041980:CDS
AACCCATGTGGAATATTGGG+AGG 0.659144 7_1:+79658632 Msa1041980:CDS
TGCTCTTGACATGATACCTG+AGG 0.662422 7_1:+79659797 Msa1041980:CDS
GCCTGATATGAAATTATCGG+CGG 0.663501 7_1:-79661187 None:intergenic
ATACCTCCCAATATTCCACA+TGG 0.666278 7_1:-79658635 None:intergenic
GAAACAATACCTGTGAATCG+AGG 0.669091 7_1:-79660359 None:intergenic
AACTACACTATAGAGAAAGA+CGG 0.678317 7_1:+79660895 Msa1041980:CDS
TGAGGAGGCATATACTGAGG+AGG 0.678998 7_1:+79659815 Msa1041980:CDS
CAGGGCAACACCAACCCATG+TGG 0.679640 7_1:+79658620 Msa1041980:CDS
CACCTCCAAAGATTGTGCAA+GGG 0.681508 7_1:+79660821 Msa1041980:CDS
TCTTGACATGATACCTGAGG+AGG 0.683745 7_1:+79659800 Msa1041980:CDS
TTTCTCTATAGTGTAGTTCG+GGG 0.684958 7_1:-79660890 None:intergenic
GGCATGACAAGTACAGACCA+AGG 0.685007 7_1:+79660719 Msa1041980:CDS
CTTATAATAAAACCTGTGTG+GGG 0.685393 7_1:+79654952 Msa1041980:five_prime_UTR
AGAGAAAGACGGCGGCAATG+GGG 0.685515 7_1:+79660906 Msa1041980:CDS
ACCTGAGGAGGCATATACTG+AGG 0.687934 7_1:+79659812 Msa1041980:CDS
AATGCATCTGGATCTTGACA+GGG 0.688800 7_1:+79658602 Msa1041980:CDS
CAAGGGTTAGGGTTAAACAA+TGG 0.699057 7_1:+79655007 Msa1041980:exon
TAGGGTTAAACAATGGCGAG+CGG 0.710396 7_1:+79655014 Msa1041980:exon
TACCTCCCAATATTCCACAT+GGG 0.710728 7_1:-79658634 None:intergenic
CCTTGGCCTTGTATATGTGG+AGG 0.714941 7_1:-79659598 None:intergenic
AAAGGTGGTTGAGTACTGGG+AGG 0.739956 7_1:+79659562 Msa1041980:CDS
TACACTATAGAGAAAGACGG+CGG 0.747701 7_1:+79660898 Msa1041980:CDS
GAGCTGCTTGCTGAACAAAG+GGG 0.752410 7_1:+79659428 Msa1041980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAATACAAATAATTAATT+CGG - chr7_1:79657122-79657141 None:intergenic 10.0%
!! AATTAATTATTTGTATTCAT+TGG + chr7_1:79657122-79657141 Msa1041980:intron 10.0%
!! TTAATTAATGATTTGATATA+TGG + chr7_1:79658530-79658549 Msa1041980:intron 10.0%
!!! TGAGTATATAAATTATATTT+TGG + chr7_1:79660163-79660182 Msa1041980:intron 10.0%
!!! ATATATAATTTGAATTTTTC+TGG + chr7_1:79660390-79660409 Msa1041980:intron 10.0%
!!! GAAATAAGATTTTTTTTTAA+CGG - chr7_1:79661038-79661057 None:intergenic 10.0%
!!! ATGTTTTTTTTTTTCTTCTA+TGG + chr7_1:79655441-79655460 Msa1041980:intron 15.0%
!! TAAATATTTCAGATAAATAC+TGG + chr7_1:79655530-79655549 Msa1041980:intron 15.0%
!! AATCATATATATCTTCATAT+TGG - chr7_1:79655559-79655578 None:intergenic 15.0%
!!! ACCTAAAAAATGTTATTTTT+AGG + chr7_1:79655584-79655603 Msa1041980:intron 15.0%
!!! ACCTAAAAATAACATTTTTT+AGG - chr7_1:79655588-79655607 None:intergenic 15.0%
!! AAAAAAATAGAATTAACACT+AGG + chr7_1:79656122-79656141 Msa1041980:intron 15.0%
!!! AGTATTGAAATTTTTTCAAA+AGG - chr7_1:79656640-79656659 None:intergenic 15.0%
!!! AAAGAAAATAACTTTTTTGT+AGG - chr7_1:79657978-79657997 None:intergenic 15.0%
!!! TATTAATTTGCTTCAAATAT+AGG + chr7_1:79659686-79659705 Msa1041980:intron 15.0%
!!! CTGATTTTTTTTTTTTGTTC+AGG + chr7_1:79655325-79655344 Msa1041980:intron 20.0%
!!! ATGTTATTTTTAGGTTTGTT+TGG + chr7_1:79655593-79655612 Msa1041980:intron 20.0%
!! TCAATTGTTTGAATTTACAT+GGG - chr7_1:79656212-79656231 None:intergenic 20.0%
!! TAAAGTCAATCTCTTAAATT+TGG - chr7_1:79656395-79656414 None:intergenic 20.0%
!!! AAACAAGTTTTAAGAACAAT+CGG + chr7_1:79656747-79656766 Msa1041980:intron 20.0%
!! TTGTTAGTTAATACGTATTA+TGG + chr7_1:79657443-79657462 Msa1041980:intron 20.0%
!! TGTTAGTTAATACGTATTAT+GGG + chr7_1:79657444-79657463 Msa1041980:intron 20.0%
!! TTAAACTAATATGTCAGATT+AGG - chr7_1:79657541-79657560 None:intergenic 20.0%
!! ATTATAACAGTTGAAACTTA+GGG - chr7_1:79657644-79657663 None:intergenic 20.0%
!! AATTATAACAGTTGAAACTT+AGG - chr7_1:79657645-79657664 None:intergenic 20.0%
!! ATTATAACAGTTGAAACTTA+GGG - chr7_1:79657644-79657663 None:intergenic 20.0%
!! AATTATAACAGTTGAAACTT+AGG - chr7_1:79657645-79657664 None:intergenic 20.0%
!!! AAGTTATTTTCTTTTAACCA+CGG + chr7_1:79657984-79658003 Msa1041980:intron 20.0%
!!! CAAAAACTGTGTTATTTTAT+TGG + chr7_1:79658102-79658121 Msa1041980:intron 20.0%
!! AGAAATAAATGAACCATATA+TGG + chr7_1:79658405-79658424 Msa1041980:CDS 20.0%
!!! TCAAAAAGTGCTTATATTTA+GGG - chr7_1:79658875-79658894 None:intergenic 20.0%
!! TGTATAAGGGTTTATATTTA+TGG - chr7_1:79658911-79658930 None:intergenic 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG - chr7_1:79658973-79658992 None:intergenic 20.0%
!! GAAGTTAGTAGTATTAATTA+GGG - chr7_1:79658974-79658993 None:intergenic 20.0%
!! AGAAGTTAGTAGTATTAATT+AGG - chr7_1:79658975-79658994 None:intergenic 20.0%
!! AATTAATACTACTAACTTCT+TGG + chr7_1:79658975-79658994 Msa1041980:intron 20.0%
!! TTTCTTAAGAAATGTGAAAA+AGG + chr7_1:79659133-79659152 Msa1041980:intron 20.0%
!!! AGTAAATATTTTAGTTGGAT+TGG + chr7_1:79659186-79659205 Msa1041980:intron 20.0%
!!! TGAAAGTCATTTAGTTTTTT+TGG - chr7_1:79659215-79659234 None:intergenic 20.0%
!! AAAGCTTAGTTAAGATTTAT+TGG + chr7_1:79659296-79659315 Msa1041980:intron 20.0%
!! GCATTAGAACAAATATTTAA+AGG - chr7_1:79659664-79659683 None:intergenic 20.0%
!!! AAGGTATATACATTTTGTTT+CGG + chr7_1:79659856-79659875 Msa1041980:intron 20.0%
!!! GTTGTTCATTACTTTTTTAT+TGG + chr7_1:79659883-79659902 Msa1041980:intron 20.0%
!! TATACTCATAATAAAAGTAG+AGG - chr7_1:79660151-79660170 None:intergenic 20.0%
!!! AATTATATTTTGGTACGTAT+AGG + chr7_1:79660173-79660192 Msa1041980:intron 20.0%
!! AAAAATAGGATAGAATGATT+CGG + chr7_1:79660448-79660467 Msa1041980:intron 20.0%
!! TCAAAAACTTAAAAGTTGAA+AGG - chr7_1:79660665-79660684 None:intergenic 20.0%
!!! TTTTAAGTTTTTGACAATTC+TGG + chr7_1:79660671-79660690 Msa1041980:intron 20.0%
!!! ACACAGGTTTTATTATAAGT+GGG - chr7_1:79654951-79654970 None:intergenic 25.0%
! ACTTATAATAAAACCTGTGT+GGG + chr7_1:79654951-79654970 Msa1041980:five_prime_UTR 25.0%
! TGTTTATGTTTCTCCATATA+TGG + chr7_1:79655744-79655763 Msa1041980:intron 25.0%
! TTAAGAGTTTCAAATTGAAG+CGG + chr7_1:79655781-79655800 Msa1041980:intron 25.0%
!! TCTTTAAGCTTTAGCTTAAT+AGG + chr7_1:79655831-79655850 Msa1041980:intron 25.0%
! TAAGTTAATCCAAACATACT+CGG - chr7_1:79655907-79655926 None:intergenic 25.0%
!! AGTTTGACACTATTTTATCT+TGG + chr7_1:79656014-79656033 Msa1041980:intron 25.0%
!! GTTTGACACTATTTTATCTT+GGG + chr7_1:79656015-79656034 Msa1041980:intron 25.0%
! CTCAATTGTTTGAATTTACA+TGG - chr7_1:79656213-79656232 None:intergenic 25.0%
! TATTATTACCCAAATCTTGA+GGG - chr7_1:79656315-79656334 None:intergenic 25.0%
! TTATTATTACCCAAATCTTG+AGG - chr7_1:79656316-79656335 None:intergenic 25.0%
! AGATTTGGGTAATAATAAGA+CGG + chr7_1:79656318-79656337 Msa1041980:intron 25.0%
! AAATGATAGGTTATATGACA+AGG - chr7_1:79656451-79656470 None:intergenic 25.0%
! TGAAGCATGTATTAAATGAT+AGG - chr7_1:79656464-79656483 None:intergenic 25.0%
! AACATTCCATGTATATTTCA+TGG + chr7_1:79656488-79656507 Msa1041980:intron 25.0%
! ACATTCCATGTATATTTCAT+GGG + chr7_1:79656489-79656508 Msa1041980:intron 25.0%
!! AAATAATTTGTATACGGACT+TGG + chr7_1:79656579-79656598 Msa1041980:intron 25.0%
!!! ACATGAATCACTTTTGTTTT+AGG + chr7_1:79656781-79656800 Msa1041980:intron 25.0%
!!! CATGAATCACTTTTGTTTTA+GGG + chr7_1:79656782-79656801 Msa1041980:intron 25.0%
! AAGTTGGATATTGAAGAAAA+TGG - chr7_1:79657009-79657028 None:intergenic 25.0%
!! CCAGTTTAAAATGATAAAGT+TGG - chr7_1:79657025-79657044 None:intergenic 25.0%
!! CCAACTTTATCATTTTAAAC+TGG + chr7_1:79657022-79657041 Msa1041980:intron 25.0%
! TTATTTGTATTCATTGGAGA+TGG + chr7_1:79657128-79657147 Msa1041980:intron 25.0%
! TTATTACCTATTCCTAGTTA+TGG - chr7_1:79657191-79657210 None:intergenic 25.0%
! AAATTGAAAAGGTGAAAAAG+AGG + chr7_1:79657353-79657372 Msa1041980:CDS 25.0%
!! TTTAAACATGAGTCTAAGAT+TGG + chr7_1:79657556-79657575 Msa1041980:intron 25.0%
!!! TTTGTTGTTCTTGTCTAATA+TGG + chr7_1:79657711-79657730 Msa1041980:intron 25.0%
! GAAACTTAGGGATTAAATAA+AGG - chr7_1:79657862-79657881 None:intergenic 25.0%
!!! TTTGTTGTTCTTGTCTAATA+TGG + chr7_1:79657711-79657730 Msa1041980:intron 25.0%
!!! AGTTATTTTCTTTTAACCAC+GGG + chr7_1:79657985-79658004 Msa1041980:intron 25.0%
! TGACATAAGTGTTAGATTAA+TGG + chr7_1:79658076-79658095 Msa1041980:intron 25.0%
! TTGCATAATTAAACAGCTTT+AGG - chr7_1:79658483-79658502 None:intergenic 25.0%
! AATGATTTGATATATGGTAC+AGG + chr7_1:79658536-79658555 Msa1041980:intron 25.0%
! ATGATTTGATATATGGTACA+GGG + chr7_1:79658537-79658556 Msa1041980:intron 25.0%
!!! CATTTATGTTGTTTCAGATA+CGG - chr7_1:79658715-79658734 None:intergenic 25.0%
!!! CTCAAAAAGTGCTTATATTT+AGG - chr7_1:79658876-79658895 None:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG - chr7_1:79658963-79658982 None:intergenic 25.0%
! ACACAAAATACTACAAACAA+AGG + chr7_1:79659059-79659078 Msa1041980:intron 25.0%
! GTGTTGCATAAAACAATAAA+CGG - chr7_1:79659247-79659266 None:intergenic 25.0%
!!! ATTGTTTTATGCAACACATT+TGG + chr7_1:79659250-79659269 Msa1041980:intron 25.0%
!! TCAAATATAGGCTTGTTTAA+AGG + chr7_1:79659698-79659717 Msa1041980:intron 25.0%
! CGCGTGATTATTAAATTTAA+TGG + chr7_1:79660121-79660140 Msa1041980:intron 25.0%
! AACTCTAAATTATCTTCAGA+TGG - chr7_1:79660270-79660289 None:intergenic 25.0%
! TAGAAAATATGCTGTTAGAT+AGG + chr7_1:79660414-79660433 Msa1041980:intron 25.0%
!! AGGTTAGCTCATAAAAAAAT+AGG + chr7_1:79660434-79660453 Msa1041980:intron 25.0%
! AAAGAGGTAATTGAAGAATA+TGG - chr7_1:79660544-79660563 None:intergenic 25.0%
! TTGACAATTCTGGTAAATAT+TGG + chr7_1:79660681-79660700 Msa1041980:intron 25.0%
! AGACTTACTATATCTTCATA+TGG - chr7_1:79660964-79660983 None:intergenic 25.0%
! TAATAGTTAGTGTGTTATGT+CGG - chr7_1:79661008-79661027 None:intergenic 25.0%
! ATTGCCTGATATGAAATTAT+CGG - chr7_1:79661193-79661212 None:intergenic 25.0%
!! CACGTATTTGCTAAAAAAAA+TGG - chr7_1:79661271-79661290 None:intergenic 25.0%
!! ATTTCAAACAGTAGATTTTG+TGG - chr7_1:79661312-79661331 None:intergenic 25.0%
!! AAAATCTACTGTTTGAAATG+TGG + chr7_1:79661313-79661332 Msa1041980:three_prime_UTR 25.0%
! TTAGATCAAATCACAATCAT+GGG - chr7_1:79661383-79661402 None:intergenic 25.0%
! TTTAGATCAAATCACAATCA+TGG - chr7_1:79661384-79661403 None:intergenic 25.0%
! TGCACTAATTAACTAGTATA+TGG - chr7_1:79661429-79661448 None:intergenic 25.0%
! ATTCTTATCGAGTATATTCT+AGG - chr7_1:79661470-79661489 None:intergenic 25.0%
! AGAATTATTGCATATTCGTA+TGG + chr7_1:79661583-79661602 Msa1041980:three_prime_UTR 25.0%
! TCGTATGGATAATAACAAAA+AGG + chr7_1:79661598-79661617 Msa1041980:three_prime_UTR 25.0%
! CGTATGGATAATAACAAAAA+GGG + chr7_1:79661599-79661618 Msa1041980:three_prime_UTR 25.0%
!!! CACACAGGTTTTATTATAAG+TGG - chr7_1:79654952-79654971 None:intergenic 30.0%
CACTTATAATAAAACCTGTG+TGG + chr7_1:79654950-79654969 Msa1041980:five_prime_UTR 30.0%
CTTATAATAAAACCTGTGTG+GGG + chr7_1:79654952-79654971 Msa1041980:five_prime_UTR 30.0%
TTGAATCATCATCTGAATCT+CGG - chr7_1:79655136-79655155 None:intergenic 30.0%
ATTGAAGACGAATACAGTAT+CGG + chr7_1:79655367-79655386 Msa1041980:CDS 30.0%
TCCAATGATTCTAATCCATT+TGG + chr7_1:79655395-79655414 Msa1041980:CDS 30.0%
!! ACCAAATGGATTAGAATCAT+TGG - chr7_1:79655399-79655418 None:intergenic 30.0%
TTGAGATTAGTATCACCAAA+TGG - chr7_1:79655413-79655432 None:intergenic 30.0%
AGAAGAAAAGACAAGTAGAA+AGG + chr7_1:79655680-79655699 Msa1041980:CDS 30.0%
TTCAGAACACTAACCATATA+TGG - chr7_1:79655760-79655779 None:intergenic 30.0%
ATTTCATACAAGCATGACAT+AGG + chr7_1:79655864-79655883 Msa1041980:intron 30.0%
AAGTTAATCCAAACATACTC+GGG - chr7_1:79655906-79655925 None:intergenic 30.0%
ACTTATTTGAGCTTATCTAC+TGG + chr7_1:79655922-79655941 Msa1041980:intron 30.0%
CTTATTTGAGCTTATCTACT+GGG + chr7_1:79655923-79655942 Msa1041980:intron 30.0%
TATAAGCTGTTTATCCAAAC+AGG + chr7_1:79656083-79656102 Msa1041980:intron 30.0%
ATAAGCTGTTTATCCAAACA+GGG + chr7_1:79656084-79656103 Msa1041980:intron 30.0%
ATTATTACCCAAATCTTGAG+GGG - chr7_1:79656314-79656333 None:intergenic 30.0%
CATTCCATGTATATTTCATG+GGG + chr7_1:79656490-79656509 Msa1041980:intron 30.0%
! GGTCGGAAATAATTTGTATA+CGG + chr7_1:79656573-79656592 Msa1041980:intron 30.0%
!!! TTTGTTTTAGGGTTTGAAAG+TGG + chr7_1:79656793-79656812 Msa1041980:intron 30.0%
AGTCTATTGAAACCATAACT+AGG + chr7_1:79657176-79657195 Msa1041980:intron 30.0%
TTGAAACCATAACTAGGAAT+AGG + chr7_1:79657182-79657201 Msa1041980:intron 30.0%
!! GCTATTCATTAGTCTTCTTT+AGG + chr7_1:79657218-79657237 Msa1041980:intron 30.0%
!! TCATTAGTCTTCTTTAGGTA+AGG + chr7_1:79657223-79657242 Msa1041980:intron 30.0%
TGTTCTCTCAATTACAATAC+AGG + chr7_1:79657327-79657346 Msa1041980:intron 30.0%
AATACAGGCAGAAATTGAAA+AGG + chr7_1:79657342-79657361 Msa1041980:intron 30.0%
CTAACAACAAATAATGAGAG+AGG - chr7_1:79657430-79657449 None:intergenic 30.0%
GAAACTTAGGGATTAGATAA+AGG - chr7_1:79657632-79657651 None:intergenic 30.0%
TACATAGCAGTTCTTGTATT+TGG + chr7_1:79657754-79657773 Msa1041980:intron 30.0%
ACATAGCAGTTCTTGTATTT+GGG + chr7_1:79657755-79657774 Msa1041980:intron 30.0%
!!! TAGACACCAATCTTTTTTGT+AGG - chr7_1:79657795-79657814 None:intergenic 30.0%
!!! TTTTTTGTAGGCGACATAAT+TGG - chr7_1:79657966-79657985 None:intergenic 30.0%
!!! ATTTTGAGGCCCAAATATAA+TGG + chr7_1:79658028-79658047 Msa1041980:intron 30.0%
TGCACATTGCCATTATATTT+GGG - chr7_1:79658040-79658059 None:intergenic 30.0%
TTGCACATTGCCATTATATT+TGG - chr7_1:79658041-79658060 None:intergenic 30.0%
AAATATAATGGCAATGTGCA+AGG + chr7_1:79658040-79658059 Msa1041980:intron 30.0%
AATATAATGGCAATGTGCAA+GGG + chr7_1:79658041-79658060 Msa1041980:intron 30.0%
TTTGACAAATTCTTTCTTCC+AGG + chr7_1:79658127-79658146 Msa1041980:intron 30.0%
AAATGGAACTGCAGATTAAT+CGG - chr7_1:79658283-79658302 None:intergenic 30.0%
TGACTTTGCTTTGATCAAAA+TGG - chr7_1:79658300-79658319 None:intergenic 30.0%
!! ATTTTGATCAAAGCAAAGTC+AGG + chr7_1:79658299-79658318 Msa1041980:CDS 30.0%
TTTACCTTGAAGACCATATA+TGG - chr7_1:79658421-79658440 None:intergenic 30.0%
! CGTATCTGAAACAACATAAA+TGG + chr7_1:79658713-79658732 Msa1041980:intron 30.0%
! AAAGTGCTTATATTTAGGGA+CGG - chr7_1:79658871-79658890 None:intergenic 30.0%
! ATCCTTTGTTTGTAGTACTT+TGG - chr7_1:79659022-79659041 None:intergenic 30.0%
! TGTTTGTAGTATTTTGTGTG+TGG - chr7_1:79659058-79659077 None:intergenic 30.0%
!!! GAGGGAGTAAATATTTTAGT+TGG + chr7_1:79659181-79659200 Msa1041980:intron 30.0%
!! TCTTAACTAAGCTTTGAAGA+AGG - chr7_1:79659291-79659310 None:intergenic 30.0%
!!! TATGTGGAGGTGTTTTAAAA+TGG - chr7_1:79659588-79659607 None:intergenic 30.0%
TAATGTGATGAAGAATACCT+TGG - chr7_1:79659618-79659637 None:intergenic 30.0%
! AAGGCATCTGAAAGAATAAA+AGG - chr7_1:79659645-79659664 None:intergenic 30.0%
ATTAGAGGATGAAGATAAAC+CGG + chr7_1:79659770-79659789 Msa1041980:CDS 30.0%
AAAATGATTCATCAGCAGAA+CGG - chr7_1:79659967-79659986 None:intergenic 30.0%
!! TTGAAAGCCTTTAAAGCTAT+GGG + chr7_1:79660288-79660307 Msa1041980:CDS 30.0%
AAATATTGGAGCAGGTTTAT+TGG + chr7_1:79660695-79660714 Msa1041980:intron 30.0%
ATATTTGTTCCACTCATATC+CGG - chr7_1:79660773-79660792 None:intergenic 30.0%
TTTATCTTGTCTACAAGATC+AGG - chr7_1:79660868-79660887 None:intergenic 30.0%
TCTTTCTCTATAGTGTAGTT+CGG - chr7_1:79660895-79660914 None:intergenic 30.0%
AACTACACTATAGAGAAAGA+CGG + chr7_1:79660895-79660914 Msa1041980:CDS 30.0%
CTTACTATATCTTCATATGG+TGG - chr7_1:79660961-79660980 None:intergenic 30.0%
GATAATTTCATATCAGGCAA+TGG + chr7_1:79661192-79661211 Msa1041980:exon 30.0%
!! TGCTCCTTTAGAATTTATCT+TGG - chr7_1:79661339-79661358 None:intergenic 30.0%
! AGATAAATTCTAAAGGAGCA+TGG + chr7_1:79661339-79661358 Msa1041980:three_prime_UTR 30.0%
! TTATCGAGTATATTCTAGGA+AGG - chr7_1:79661466-79661485 None:intergenic 30.0%
AGAGGAAATTTCACAGTACA+TGG + chr7_1:79655214-79655233 Msa1041980:CDS 35.0%
TTGAAGACGAATACAGTATC+GGG + chr7_1:79655368-79655387 Msa1041980:CDS 35.0%
! CTTCTCAGCTTTAACAGAAA+AGG - chr7_1:79655665-79655684 None:intergenic 35.0%
GAAAAGACAAGTAGAAAGGA+TGG + chr7_1:79655684-79655703 Msa1041980:CDS 35.0%
GTTTCAAATTGAAGCGGAAT+CGG + chr7_1:79655787-79655806 Msa1041980:intron 35.0%
! AGCTTTAGCTTAATAGGTGA+TGG + chr7_1:79655837-79655856 Msa1041980:intron 35.0%
AACAATAACCCGAGTATGTT+TGG + chr7_1:79655895-79655914 Msa1041980:intron 35.0%
TTGTGAGTTGTGACATTGTT+TGG + chr7_1:79655954-79655973 Msa1041980:intron 35.0%
TGTGAGTTGTGACATTGTTT+GGG + chr7_1:79655955-79655974 Msa1041980:intron 35.0%
TTCATAAGCGCTTATGCTAT+TGG + chr7_1:79656054-79656073 Msa1041980:intron 35.0%
TGTTTATCCAAACAGGGTTT+AGG + chr7_1:79656090-79656109 Msa1041980:intron 35.0%
AGCAGTATGATTAGTAGAGT+GGG - chr7_1:79656154-79656173 None:intergenic 35.0%
GATGGTCTAGGTATTTAAAG+TGG - chr7_1:79656263-79656282 None:intergenic 35.0%
AACATTTGCATAGATGGTCT+AGG - chr7_1:79656275-79656294 None:intergenic 35.0%
CGTCAAAACATTTGCATAGA+TGG - chr7_1:79656281-79656300 None:intergenic 35.0%
TTATTACCCAAATCTTGAGG+GGG - chr7_1:79656313-79656332 None:intergenic 35.0%
TCATCTTACTAACACTACTC+TGG + chr7_1:79656353-79656372 Msa1041980:intron 35.0%
CCTACTGTTGGAAAATATGT+AGG - chr7_1:79656420-79656439 None:intergenic 35.0%
! CCTACATATTTTCCAACAGT+AGG + chr7_1:79656417-79656436 Msa1041980:intron 35.0%
AAGGTTAACATTCCTACTGT+TGG - chr7_1:79656432-79656451 None:intergenic 35.0%
CATGTATATTTCATGGGGAA+GGG + chr7_1:79656495-79656514 Msa1041980:intron 35.0%
!! CTCTGCTTTGATTTTACGTT+AGG + chr7_1:79656532-79656551 Msa1041980:intron 35.0%
TTTACGTTAGGACATGACAA+TGG + chr7_1:79656544-79656563 Msa1041980:intron 35.0%
TTTGAAAGTGGTACACAAAC+AGG + chr7_1:79656805-79656824 Msa1041980:intron 35.0%
TCATTTCTGTAGTACGTGTT+AGG + chr7_1:79656851-79656870 Msa1041980:intron 35.0%
GGCAACATTAATAGGAACTT+GGG - chr7_1:79656893-79656912 None:intergenic 35.0%
AGGCAACATTAATAGGAACT+TGG - chr7_1:79656894-79656913 None:intergenic 35.0%
AAACCAGAGGCAACATTAAT+AGG - chr7_1:79656901-79656920 None:intergenic 35.0%
AAGTGCAGGGATTAAATGAA+TGG - chr7_1:79656953-79656972 None:intergenic 35.0%
!! AACAGTTTTCAGAAAGTGCA+GGG - chr7_1:79656966-79656985 None:intergenic 35.0%
!! AAACAGTTTTCAGAAAGTGC+AGG - chr7_1:79656967-79656986 None:intergenic 35.0%
TAATTCGGAATAAGTGCAGA+AGG - chr7_1:79657107-79657126 None:intergenic 35.0%
TTGTATTCATTGGAGATGGT+TGG + chr7_1:79657132-79657151 Msa1041980:intron 35.0%
TGTATTCATTGGAGATGGTT+GGG + chr7_1:79657133-79657152 Msa1041980:intron 35.0%
AGCACAACATGAAGAAGAAA+TGG + chr7_1:79657399-79657418 Msa1041980:CDS 35.0%
ATGGCATACCAATTATGTCA+AGG + chr7_1:79657730-79657749 Msa1041980:intron 35.0%
! CTATGTAGCCTTGACATAAT+TGG - chr7_1:79657741-79657760 None:intergenic 35.0%
CATAGCAGTTCTTGTATTTG+GGG + chr7_1:79657756-79657775 Msa1041980:intron 35.0%
ATAGCAGTTCTTGTATTTGG+GGG + chr7_1:79657757-79657776 Msa1041980:intron 35.0%
TGCAAGCCTACAAAAAAGAT+TGG + chr7_1:79657786-79657805 Msa1041980:intron 35.0%
ATATTTGGGCCTCAAAATAC+CGG - chr7_1:79658026-79658045 None:intergenic 35.0%
TGAACCATATATGGTCTTCA+AGG + chr7_1:79658414-79658433 Msa1041980:CDS 35.0%
ATATATGGTACAGGGTTTGA+CGG + chr7_1:79658545-79658564 Msa1041980:intron 35.0%
AAACAACATAAATGGCAACC+CGG + chr7_1:79658721-79658740 Msa1041980:intron 35.0%
TTCAGATACACCAAATGGTA+AGG - chr7_1:79658814-79658833 None:intergenic 35.0%
! GTTGTTTCAGATACACCAAA+TGG - chr7_1:79658819-79658838 None:intergenic 35.0%
! CACCAAAGTACTACAAACAA+AGG + chr7_1:79659017-79659036 Msa1041980:intron 35.0%
GAAATGTGAAAAAGGCAAAG+CGG + chr7_1:79659141-79659160 Msa1041980:intron 35.0%
AAATGTGAAAAAGGCAAAGC+GGG + chr7_1:79659142-79659161 Msa1041980:intron 35.0%
TATTGGTCACAACTTCATGT+AGG + chr7_1:79659313-79659332 Msa1041980:intron 35.0%
TACGTGTCTTTCCATGTAAA+AGG - chr7_1:79659487-79659506 None:intergenic 35.0%
AAAACACCTCCACATATACA+AGG + chr7_1:79659592-79659611 Msa1041980:CDS 35.0%
!! GCTTACGTAACATTTTAGCA+TGG - chr7_1:79659728-79659747 None:intergenic 35.0%
GGTTTATCTTCATCCTCTAA+TGG - chr7_1:79659771-79659790 None:intergenic 35.0%
AGTAAGGATGAAGACAAAGA+TGG - chr7_1:79659911-79659930 None:intergenic 35.0%
GCTTCTTGATTCTCTCTAAT+GGG - chr7_1:79659998-79660017 None:intergenic 35.0%
AGCTTCTTGATTCTCTCTAA+TGG - chr7_1:79659999-79660018 None:intergenic 35.0%
! GTTGCATGATGATGAAAATG+AGG + chr7_1:79660051-79660070 Msa1041980:CDS 35.0%
!!! TATTTTGGTACGTATAGGAG+CGG + chr7_1:79660178-79660197 Msa1041980:intron 35.0%
AAAACGAATTCAGGAAGCAA+TGG + chr7_1:79660230-79660249 Msa1041980:CDS 35.0%
AAATTATCTTCAGATGGAGC+TGG - chr7_1:79660264-79660283 None:intergenic 35.0%
!! GTTGAAAGCCTTTAAAGCTA+TGG + chr7_1:79660287-79660306 Msa1041980:CDS 35.0%
TTCGGAGAAGTTATAAGTTG+TGG + chr7_1:79660466-79660485 Msa1041980:intron 35.0%
GTTGTGGATAAGTATCATAG+AGG + chr7_1:79660482-79660501 Msa1041980:intron 35.0%
ATTCTGGTAAATATTGGAGC+AGG + chr7_1:79660687-79660706 Msa1041980:intron 35.0%
! TTGAAATACTTTGGCTTCCT+TGG - chr7_1:79660739-79660758 None:intergenic 35.0%
TGAACACGGTTGAAATACTT+TGG - chr7_1:79660748-79660767 None:intergenic 35.0%
TTTCTCTATAGTGTAGTTCG+GGG - chr7_1:79660893-79660912 None:intergenic 35.0%
CTTTCTCTATAGTGTAGTTC+GGG - chr7_1:79660894-79660913 None:intergenic 35.0%
TGCATTATTAGATTCCATGC+AGG + chr7_1:79660934-79660953 Msa1041980:CDS 35.0%
TCCGCATTGTAAACAAAGAA+TGG + chr7_1:79661081-79661100 Msa1041980:CDS 35.0%
! CCCATTCTTTGTTTACAATG+CGG - chr7_1:79661085-79661104 None:intergenic 35.0%
CCGCATTGTAAACAAAGAAT+GGG + chr7_1:79661082-79661101 Msa1041980:CDS 35.0%
TTTAAATGCACATTCGAACG+TGG + chr7_1:79661125-79661144 Msa1041980:CDS 35.0%
!!! TAGCTTCTCCTTTTGATTTG+AGG + chr7_1:79661228-79661247 Msa1041980:three_prime_UTR 35.0%
!!! AGCTTCTCCTTTTGATTTGA+GGG + chr7_1:79661229-79661248 Msa1041980:three_prime_UTR 35.0%
GTGGCCAAGATAAATTCTAA+AGG + chr7_1:79661332-79661351 Msa1041980:three_prime_UTR 35.0%
GTTAATTAGTGCATTCCGTA+TGG + chr7_1:79661436-79661455 Msa1041980:three_prime_UTR 35.0%
TCAGATTAACAACATCGCCA+AGG + chr7_1:79654989-79655008 Msa1041980:five_prime_UTR 40.0%
CAGATTAACAACATCGCCAA+GGG + chr7_1:79654990-79655009 Msa1041980:five_prime_UTR 40.0%
CATTGTTTAACCCTAACCCT+TGG - chr7_1:79655009-79655028 None:intergenic 40.0%
CAAGGGTTAGGGTTAAACAA+TGG + chr7_1:79655007-79655026 Msa1041980:exon 40.0%
GACGACAACGATAATAGAAC+TGG + chr7_1:79655158-79655177 Msa1041980:CDS 40.0%
TTCCAGAACAATCACAGAAG+AGG + chr7_1:79655196-79655215 Msa1041980:CDS 40.0%
TTCCTCTTCTGTGATTGTTC+TGG - chr7_1:79655201-79655220 None:intergenic 40.0%
GGCTAAAAAAGCTCAGAGAA+AGG + chr7_1:79655235-79655254 Msa1041980:CDS 40.0%
CAGCAGTATGATTAGTAGAG+TGG - chr7_1:79656155-79656174 None:intergenic 40.0%
CACTCTACTAATCATACTGC+TGG + chr7_1:79656153-79656172 Msa1041980:intron 40.0%
ACACTCGTTCTTTAAACCTC+AGG + chr7_1:79656179-79656198 Msa1041980:intron 40.0%
TTCTAACCCCCTCAAGATTT+GGG + chr7_1:79656304-79656323 Msa1041980:intron 40.0%
CCTTCCCCATGAAATATACA+TGG - chr7_1:79656497-79656516 None:intergenic 40.0%
CCATGTATATTTCATGGGGA+AGG + chr7_1:79656494-79656513 Msa1041980:intron 40.0%
TGTAGTACGTGTTAGGTACT+TGG + chr7_1:79656858-79656877 Msa1041980:intron 40.0%
GTTCCTATTAATGTTGCCTC+TGG + chr7_1:79656895-79656914 Msa1041980:intron 40.0%
!! GTCCTGTGATTTGTTGCTAA+TGG + chr7_1:79657279-79657298 Msa1041980:intron 40.0%
GCAACGAACATTTAGTTGTC+AGG - chr7_1:79657305-79657324 None:intergenic 40.0%
AAAGGTGAAAAAGAGGAGAG+AGG + chr7_1:79657360-79657379 Msa1041980:CDS 40.0%
TGAAAAAGAGGAGAGAGGAA+AGG + chr7_1:79657365-79657384 Msa1041980:CDS 40.0%
GAAAAAGAGGAGAGAGGAAA+GGG + chr7_1:79657366-79657385 Msa1041980:CDS 40.0%
!! ATTAGTCTTAGCTGTCCTAG+TGG + chr7_1:79657493-79657512 Msa1041980:intron 40.0%
GAAAGTCTTCTATCTAGCGA+AGG + chr7_1:79657682-79657701 Msa1041980:intron 40.0%
TAGCAGTTCTTGTATTTGGG+GGG + chr7_1:79657758-79657777 Msa1041980:intron 40.0%
GAAAGTCTTCTATCTAGCGA+AGG + chr7_1:79657682-79657701 Msa1041980:intron 40.0%
! TTCAACTTCCCGGTATTTTG+AGG + chr7_1:79658014-79658033 Msa1041980:intron 40.0%
TATTTGGGCCTCAAAATACC+GGG - chr7_1:79658025-79658044 None:intergenic 40.0%
TCAGAGATTAGATTGCGTGA+AGG + chr7_1:79658322-79658341 Msa1041980:CDS 40.0%
CAGAGATTAGATTGCGTGAA+GGG + chr7_1:79658323-79658342 Msa1041980:CDS 40.0%
TGCTTGGTTAGGACATCAAT+TGG - chr7_1:79658358-79658377 None:intergenic 40.0%
!! TCTCAATGGCTCTGATGATT+TGG + chr7_1:79658378-79658397 Msa1041980:CDS 40.0%
TGACGACATCAAAATGCATC+TGG + chr7_1:79658590-79658609 Msa1041980:CDS 40.0%
AAATGCATCTGGATCTTGAC+AGG + chr7_1:79658601-79658620 Msa1041980:CDS 40.0%
AATGCATCTGGATCTTGACA+GGG + chr7_1:79658602-79658621 Msa1041980:CDS 40.0%
ACCAACCCATGTGGAATATT+GGG + chr7_1:79658629-79658648 Msa1041980:CDS 40.0%
TACCTCCCAATATTCCACAT+GGG - chr7_1:79658637-79658656 None:intergenic 40.0%
ATACCTCCCAATATTCCACA+TGG - chr7_1:79658638-79658657 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG - chr7_1:79658788-79658807 None:intergenic 40.0%
TGCTTATATTTAGGGACGGA+GGG - chr7_1:79658867-79658886 None:intergenic 40.0%
!! GCAAAGCGGGCTTTTATATA+GGG + chr7_1:79659155-79659174 Msa1041980:intron 40.0%
TGCAACACATTTGGCCATTA+TGG + chr7_1:79659259-79659278 Msa1041980:intron 40.0%
ACACATTTGGCCATTATGGT+CGG + chr7_1:79659263-79659282 Msa1041980:intron 40.0%
GCTAGCTGAATCTCGAAAAA+AGG + chr7_1:79659361-79659380 Msa1041980:CDS 40.0%
TGTAAAAGGTCCTTCACATC+TGG - chr7_1:79659473-79659492 None:intergenic 40.0%
! GATGTGAAGGACCTTTTACA+TGG + chr7_1:79659473-79659492 Msa1041980:CDS 40.0%
!! ATACCTTGGCCTTGTATATG+TGG - chr7_1:79659604-79659623 None:intergenic 40.0%
CATCCTTACTGAAATGTGCT+TGG + chr7_1:79659921-79659940 Msa1041980:intron 40.0%
ACACCAAGCACATTTCAGTA+AGG - chr7_1:79659927-79659946 None:intergenic 40.0%
!! ATGTGCTTGGTGTTTCTCTA+TGG + chr7_1:79659934-79659953 Msa1041980:intron 40.0%
GAATCAAGAAGCTGAAGATG+AGG + chr7_1:79660006-79660025 Msa1041980:CDS 40.0%
TCATCATCATGCAACAGTTG+TGG - chr7_1:79660046-79660065 None:intergenic 40.0%
!! AGTATAGCTTTGTCCTCTTC+AGG - chr7_1:79660088-79660107 None:intergenic 40.0%
TGAAGAGGACAAAGCTATAC+TGG + chr7_1:79660087-79660106 Msa1041980:CDS 40.0%
AGAGCAGCAAAAACGAATTC+AGG + chr7_1:79660221-79660240 Msa1041980:CDS 40.0%
GAAACAATACCTGTGAATCG+AGG - chr7_1:79660362-79660381 None:intergenic 40.0%
!! CCAACTTTTAAGGAGGAAAG+AGG - chr7_1:79660560-79660579 None:intergenic 40.0%
CCTCTTTCCTCCTTAAAAGT+TGG + chr7_1:79660557-79660576 Msa1041980:intron 40.0%
!! TCTAGTGCCAACTTTTAAGG+AGG - chr7_1:79660567-79660586 None:intergenic 40.0%
! GCATCTAGTGCCAACTTTTA+AGG - chr7_1:79660570-79660589 None:intergenic 40.0%
TATTGGAGCAGGTTTATTGG+TGG + chr7_1:79660698-79660717 Msa1041980:intron 40.0%
TATTTCAACCGTGTTCACAC+CGG + chr7_1:79660751-79660770 Msa1041980:CDS 40.0%
TGTCATGATCATAGTGAGTC+TGG - chr7_1:79660798-79660817 None:intergenic 40.0%
TTGTACCCTTGCACAATCTT+TGG - chr7_1:79660829-79660848 None:intergenic 40.0%
TACACTATAGAGAAAGACGG+CGG + chr7_1:79660898-79660917 Msa1041980:CDS 40.0%
TAGTTAGTGTGTTATGTCGG+TGG - chr7_1:79661005-79661024 None:intergenic 40.0%
TGGGAATACTCTCACAAGAA+AGG + chr7_1:79661101-79661120 Msa1041980:CDS 40.0%
TATGAAATTATCGGCGGTAG+CGG - chr7_1:79661184-79661203 None:intergenic 40.0%
ACCGCCGATAATTTCATATC+AGG + chr7_1:79661186-79661205 Msa1041980:exon 40.0%
GCCTGATATGAAATTATCGG+CGG - chr7_1:79661190-79661209 None:intergenic 40.0%
ACAGCTTCCCTCAAATCAAA+AGG - chr7_1:79661239-79661258 None:intergenic 40.0%
! TTCTAGGAAGGAACACCATA+CGG - chr7_1:79661454-79661473 None:intergenic 40.0%
ACTCGATAAGAATCTCGAGA+TGG + chr7_1:79661477-79661496 Msa1041980:three_prime_UTR 40.0%
CTCGATAAGAATCTCGAGAT+GGG + chr7_1:79661478-79661497 Msa1041980:three_prime_UTR 40.0%
TCAATCGAATTTCCCCACAC+AGG - chr7_1:79654967-79654986 None:intergenic 45.0%
TAACAACATCGCCAAGGGTT+AGG + chr7_1:79654995-79655014 Msa1041980:five_prime_UTR 45.0%
AACAACATCGCCAAGGGTTA+GGG + chr7_1:79654996-79655015 Msa1041980:five_prime_UTR 45.0%
TAGGGTTAAACAATGGCGAG+CGG + chr7_1:79655014-79655033 Msa1041980:exon 45.0%
GTCAGATGCAGAGTCATCAT+CGG - chr7_1:79655072-79655091 None:intergenic 45.0%
ATTGAGCGCGATGTTACTCA+AGG + chr7_1:79655625-79655644 Msa1041980:CDS 45.0%
CAACAGACCTAAACCCTGTT+TGG - chr7_1:79656100-79656119 None:intergenic 45.0%
CAAACAGGGTTTAGGTCTGT+TGG + chr7_1:79656098-79656117 Msa1041980:intron 45.0%
TTACATGGGACATGTTCCTG+AGG - chr7_1:79656198-79656217 None:intergenic 45.0%
CTTCTAACCCCCTCAAGATT+TGG + chr7_1:79656303-79656322 Msa1041980:intron 45.0%
CGTTAGGACATGACAATGGT+TGG + chr7_1:79656548-79656567 Msa1041980:intron 45.0%
TAGGACATGACAATGGTTGG+TGG + chr7_1:79656551-79656570 Msa1041980:intron 45.0%
AGGACATGACAATGGTTGGT+GGG + chr7_1:79656552-79656571 Msa1041980:intron 45.0%
TTCATTGGAGATGGTTGGGT+TGG + chr7_1:79657137-79657156 Msa1041980:intron 45.0%
TCATTGGAGATGGTTGGGTT+GGG + chr7_1:79657138-79657157 Msa1041980:intron 45.0%
GGCCATTAGCAACAAATCAC+AGG - chr7_1:79657284-79657303 None:intergenic 45.0%
CATAGTAACACACTGCCACT+AGG - chr7_1:79657511-79657530 None:intergenic 45.0%
GGAAGTTGAATTATAGCCCG+TGG - chr7_1:79658004-79658023 None:intergenic 45.0%
CGGGCTATAATTCAACTTCC+CGG + chr7_1:79658004-79658023 Msa1041980:intron 45.0%
GTTCTCTAGCTAACAATGCC+TGG - chr7_1:79658148-79658167 None:intergenic 45.0%
GTTCCAGGACTGGGAAAAAA+AGG + chr7_1:79658181-79658200 Msa1041980:CDS 45.0%
!!! CTTCCTTTTTTTCCCAGTCC+TGG - chr7_1:79658187-79658206 None:intergenic 45.0%
GGACTGGGAAAAAAAGGAAG+AGG + chr7_1:79658187-79658206 Msa1041980:CDS 45.0%
CTGGGAAAAAAAGGAAGAGG+AGG + chr7_1:79658190-79658209 Msa1041980:CDS 45.0%
GTCCTAACCAAGCATCTCAA+TGG + chr7_1:79658364-79658383 Msa1041980:CDS 45.0%
AGCCATTGAGATGCTTGGTT+AGG - chr7_1:79658369-79658388 None:intergenic 45.0%
ATCAGAGCCATTGAGATGCT+TGG - chr7_1:79658374-79658393 None:intergenic 45.0%
CACCAACCCATGTGGAATAT+TGG + chr7_1:79658628-79658647 Msa1041980:CDS 45.0%
TCCCAATATTCCACATGGGT+TGG - chr7_1:79658633-79658652 None:intergenic 45.0%
AACCCATGTGGAATATTGGG+AGG + chr7_1:79658632-79658651 Msa1041980:CDS 45.0%
CATGTGCAGAGCTCAAACAA+GGG - chr7_1:79658671-79658690 None:intergenic 45.0%
GCGTACAATACACCAAATGG+TGG - chr7_1:79658789-79658808 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - chr7_1:79658792-79658811 None:intergenic 45.0%
TTGTACGCAGCCTTACCATT+TGG + chr7_1:79658801-79658820 Msa1041980:intron 45.0%
GTGCTTATATTTAGGGACGG+AGG - chr7_1:79658868-79658887 None:intergenic 45.0%
!! GGCAAAGCGGGCTTTTATAT+AGG + chr7_1:79659154-79659173 Msa1041980:intron 45.0%
!! AGCGGGCTTTTATATAGGGA+CGG + chr7_1:79659159-79659178 Msa1041980:intron 45.0%
! GGCTTTTATATAGGGACGGA+GGG + chr7_1:79659163-79659182 Msa1041980:intron 45.0%
TCTCCTTGTGGTGTGTGATT+GGG + chr7_1:79659337-79659356 Msa1041980:CDS 45.0%
AGGATGCAATTGATCGAGCT+AGG + chr7_1:79659381-79659400 Msa1041980:CDS 45.0%
GGATGCAATTGATCGAGCTA+GGG + chr7_1:79659382-79659401 Msa1041980:CDS 45.0%
! TGAGCTGCTTGCTGAACAAA+GGG + chr7_1:79659427-79659446 Msa1041980:CDS 45.0%
TGGAAAGACACGTACAGAGT+TGG + chr7_1:79659493-79659512 Msa1041980:CDS 45.0%
TACAGAGTTGGAAGCCTTAC+AGG + chr7_1:79659505-79659524 Msa1041980:CDS 45.0%
TGACTCAATGTGAGCCTGTA+AGG - chr7_1:79659522-79659541 None:intergenic 45.0%
ATTGAGTCAGAGATGCGTAC+TGG + chr7_1:79659533-79659552 Msa1041980:CDS 45.0%
AGCAAAGGTGGTTGAGTACT+GGG + chr7_1:79659559-79659578 Msa1041980:CDS 45.0%
ACGTCTTGAGCAACCATTAG+AGG + chr7_1:79659755-79659774 Msa1041980:CDS 45.0%
TGCTCTTGACATGATACCTG+AGG + chr7_1:79659797-79659816 Msa1041980:CDS 45.0%
TCTTGACATGATACCTGAGG+AGG + chr7_1:79659800-79659819 Msa1041980:CDS 45.0%
ATATACTGAGGAGGATGAGG+AGG + chr7_1:79659824-79659843 Msa1041980:CDS 45.0%
!! TGATTCTCTCTAATGGGCTC+TGG - chr7_1:79659992-79660011 None:intergenic 45.0%
GGAAGCTATTGATCCTGAAG+AGG + chr7_1:79660072-79660091 Msa1041980:CDS 45.0%
!! CATGGCTCCCATAGCTTTAA+AGG - chr7_1:79660298-79660317 None:intergenic 45.0%
!! CTTTAAAGCTATGGGAGCCA+TGG + chr7_1:79660296-79660315 Msa1041980:CDS 45.0%
ACTCATATCCGGTGTGAACA+CGG - chr7_1:79660762-79660781 None:intergenic 45.0%
! CTTGCACAATCTTTGGAGGT+GGG - chr7_1:79660822-79660841 None:intergenic 45.0%
CACCTCCAAAGATTGTGCAA+GGG + chr7_1:79660821-79660840 Msa1041980:CDS 45.0%
TACCCTTGCACAATCTTTGG+AGG - chr7_1:79660826-79660845 None:intergenic 45.0%
TTCCTTGTGTCTTCCATGAC+AGG + chr7_1:79661055-79661074 Msa1041980:intron 45.0%
TGATACCTAGGGATGACGAT+AGG + chr7_1:79661514-79661533 Msa1041980:three_prime_UTR 45.0%
GATACCTAGGGATGACGATA+GGG + chr7_1:79661515-79661534 Msa1041980:three_prime_UTR 45.0%
!! AAAAATTCAAATTATATATA+TGG - chr7_1:79660389-79660408 None:intergenic 5.0%
!!! TAATTTATTTTTATATTTGA+AGG + chr7_1:79660607-79660626 Msa1041980:intron 5.0%
!! CATGACAATGGTTGGTGGGT+CGG + chr7_1:79656556-79656575 Msa1041980:intron 50.0%
! ATGTTGCCTCTGGTTTCGAC+TGG + chr7_1:79656905-79656924 Msa1041980:intron 50.0%
TGTACACCAGTCGAAACCAG+AGG - chr7_1:79656914-79656933 None:intergenic 50.0%
! CATTGGAGATGGTTGGGTTG+GGG + chr7_1:79657139-79657158 Msa1041980:intron 50.0%
GGTTAGGACATCAATTGGCC+TGG - chr7_1:79658353-79658372 None:intergenic 50.0%
GCATGTGCAGAGCTCAAACA+AGG - chr7_1:79658672-79658691 None:intergenic 50.0%
! GGGCTTTTATATAGGGACGG+AGG + chr7_1:79659162-79659181 Msa1041980:intron 50.0%
!! GAAGAAGGTGCCGACCATAA+TGG - chr7_1:79659276-79659295 None:intergenic 50.0%
CTTCATGTAGGCTCTCCTTG+TGG + chr7_1:79659325-79659344 Msa1041980:intron 50.0%
CTCTCCTTGTGGTGTGTGAT+TGG + chr7_1:79659336-79659355 Msa1041980:CDS 50.0%
! CTGAGCTGCTTGCTGAACAA+AGG + chr7_1:79659426-79659445 Msa1041980:CDS 50.0%
! GAGCTGCTTGCTGAACAAAG+GGG + chr7_1:79659428-79659447 Msa1041980:CDS 50.0%
! CTTCACATCTGGCTCAACAC+TGG - chr7_1:79659462-79659481 None:intergenic 50.0%
! CAGTGTTGAGCCAGATGTGA+AGG + chr7_1:79659460-79659479 Msa1041980:CDS 50.0%
! GATGCGTACTGGTACAGCAA+AGG + chr7_1:79659544-79659563 Msa1041980:CDS 50.0%
CAGCAAAGGTGGTTGAGTAC+TGG + chr7_1:79659558-79659577 Msa1041980:CDS 50.0%
!! AAAGGTGGTTGAGTACTGGG+AGG + chr7_1:79659562-79659581 Msa1041980:CDS 50.0%
!! CCTTGGCCTTGTATATGTGG+AGG - chr7_1:79659601-79659620 None:intergenic 50.0%
CCTCCACATATACAAGGCCA+AGG + chr7_1:79659598-79659617 Msa1041980:CDS 50.0%
! ATCATGTCAAGAGCACGCTC+CGG - chr7_1:79659792-79659811 None:intergenic 50.0%
! ACCTGAGGAGGCATATACTG+AGG + chr7_1:79659812-79659831 Msa1041980:CDS 50.0%
TCCTCAGTATATGCCTCCTC+AGG - chr7_1:79659816-79659835 None:intergenic 50.0%
! TGAGGAGGCATATACTGAGG+AGG + chr7_1:79659815-79659834 Msa1041980:CDS 50.0%
GGCATATACTGAGGAGGATG+AGG + chr7_1:79659821-79659840 Msa1041980:CDS 50.0%
GATGAGGAGGAGGATGCTAA+AGG + chr7_1:79659837-79659856 Msa1041980:CDS 50.0%
CAAGAAGCTGAAGATGAGGC+TGG + chr7_1:79660010-79660029 Msa1041980:CDS 50.0%
CGTATAGGAGCGGAAACGTA+TGG + chr7_1:79660188-79660207 Msa1041980:intron 50.0%
GCGGAAACGTATGGCTGTAA+TGG + chr7_1:79660197-79660216 Msa1041980:CDS 50.0%
TAAAGCTATGGGAGCCATGG+AGG + chr7_1:79660299-79660318 Msa1041980:CDS 50.0%
TGAAGTGAGCCTCGATTCAC+AGG + chr7_1:79660350-79660369 Msa1041980:CDS 50.0%
GGCATGACAAGTACAGACCA+AGG + chr7_1:79660719-79660738 Msa1041980:CDS 50.0%
GTGTTCACACCGGATATGAG+TGG + chr7_1:79660761-79660780 Msa1041980:CDS 50.0%
! CCTTGCACAATCTTTGGAGG+TGG - chr7_1:79660823-79660842 None:intergenic 50.0%
CCACCTCCAAAGATTGTGCA+AGG + chr7_1:79660820-79660839 Msa1041980:CDS 50.0%
ATAGAGAAAGACGGCGGCAA+TGG + chr7_1:79660904-79660923 Msa1041980:CDS 50.0%
TAGAGAAAGACGGCGGCAAT+GGG + chr7_1:79660905-79660924 Msa1041980:CDS 50.0%
CTTCATATGGTGGTCCTGCA+TGG - chr7_1:79660951-79660970 None:intergenic 50.0%
AGCCTGTCATGGAAGACACA+AGG - chr7_1:79661060-79661079 None:intergenic 50.0%
ACAATGCGGAAAGCCTGTCA+TGG - chr7_1:79661071-79661090 None:intergenic 50.0%
AATCTCGAGATGGGTCTCTC+CGG + chr7_1:79661487-79661506 Msa1041980:three_prime_UTR 50.0%
!!! ACTAGTTTTCCGGCGGTGGT+CGG - chr7_1:79655102-79655121 None:intergenic 55.0%
!!! GTGACCGGCGACTAGTTTTC+CGG - chr7_1:79655112-79655131 None:intergenic 55.0%
CATCTGAATCTCGGCGTGAC+CGG - chr7_1:79655127-79655146 None:intergenic 55.0%
!! AGATGGTTGGGTTGGGGATC+TGG + chr7_1:79657145-79657164 Msa1041980:intron 55.0%
TCGAGCTGAGTTCCAGGACT+GGG + chr7_1:79658172-79658191 Msa1041980:CDS 55.0%
GCTCCCAATCACACACCACA+AGG - chr7_1:79659343-79659362 None:intergenic 55.0%
ATTGATCGAGCTAGGGTGCG+TGG + chr7_1:79659389-79659408 Msa1041980:CDS 55.0%
TGTTCAGCAAGCAGCTCAGC+AGG - chr7_1:79659425-79659444 None:intergenic 55.0%
! GCGTACTGGTACAGCAAAGG+TGG + chr7_1:79659547-79659566 Msa1041980:CDS 55.0%
TACTGAGGAGGATGAGGAGG+AGG + chr7_1:79659827-79659846 Msa1041980:CDS 55.0%
GAGGATGGAGACGCAGTGTT+TGG + chr7_1:79660318-79660337 Msa1041980:CDS 55.0%
GGAGACGCAGTGTTTGGATC+TGG + chr7_1:79660324-79660343 Msa1041980:CDS 55.0%
AGAGAAAGACGGCGGCAATG+GGG + chr7_1:79660906-79660925 Msa1041980:CDS 55.0%
! GAAATTATCGGCGGTAGCGG+TGG - chr7_1:79661181-79661200 None:intergenic 55.0%
TCTCCGGCGAGTGATACCTA+GGG + chr7_1:79661503-79661522 Msa1041980:three_prime_UTR 55.0%
CATCCCTAGGTATCACTCGC+CGG - chr7_1:79661509-79661528 None:intergenic 55.0%
CAGACCCTATCGTCATCCCT+AGG - chr7_1:79661522-79661541 None:intergenic 55.0%
ACCGCCGGAAAACTAGTCGC+CGG + chr7_1:79655105-79655124 Msa1041980:CDS 60.0%
!!! ACCGGCGACTAGTTTTCCGG+CGG - chr7_1:79655109-79655128 None:intergenic 60.0%
ACGTGCTCGAGCTGAGTTCC+AGG + chr7_1:79658166-79658185 Msa1041980:CDS 60.0%
CTCGAGCTGAGTTCCAGGAC+TGG + chr7_1:79658171-79658190 Msa1041980:CDS 60.0%
CAGGGCAACACCAACCCATG+TGG + chr7_1:79658620-79658639 Msa1041980:CDS 60.0%
! ACGCGGGAGCTTTAGTGCAC+CGG - chr7_1:79658743-79658762 None:intergenic 60.0%
ACTAAAGCTCCCGCGTACGC+AGG + chr7_1:79658747-79658766 Msa1041980:intron 60.0%
CTAAAGCTCCCGCGTACGCA+GGG + chr7_1:79658748-79658767 Msa1041980:intron 60.0%
! AAATGGTGGGACCCCTTCCC+CGG - chr7_1:79658775-79658794 None:intergenic 60.0%
TCAGCAAGCAGCTCAGCAGG+AGG - chr7_1:79659422-79659441 None:intergenic 60.0%
GCTATGGGAGCCATGGAGGA+TGG + chr7_1:79660303-79660322 Msa1041980:CDS 60.0%
CACTGCGTCTCCATCCTCCA+TGG - chr7_1:79660316-79660335 None:intergenic 60.0%
CTCTCCGGCGAGTGATACCT+AGG + chr7_1:79661502-79661521 Msa1041980:three_prime_UTR 60.0%
TTTCCGGCGGTGGTCGGAGT+CGG - chr7_1:79655096-79655115 None:intergenic 65.0%
!!! GGCGACTAGTTTTCCGGCGG+TGG - chr7_1:79655106-79655125 None:intergenic 65.0%
! GATTGCGTGAAGGGCGTGCC+AGG + chr7_1:79658332-79658351 Msa1041980:CDS 65.0%
! CGCGGGAGCTTTAGTGCACC+GGG - chr7_1:79658742-79658761 None:intergenic 65.0%
GGGGAAGGGGTCCCACCATT+TGG + chr7_1:79658774-79658793 Msa1041980:intron 65.0%
ACTCCGACTCCGACCACCGC+CGG + chr7_1:79655090-79655109 Msa1041980:CDS 70.0%
TTCCCCGGACCCTGCGTACG+CGG - chr7_1:79658760-79658779 None:intergenic 70.0%
CGTACGCAGGGTCCGGGGAA+GGG + chr7_1:79658760-79658779 Msa1041980:intron 70.0%
GTACGCAGGGTCCGGGGAAG+GGG + chr7_1:79658761-79658780 Msa1041980:intron 70.0%
GCTCCCGCGTACGCAGGGTC+CGG + chr7_1:79658753-79658772 Msa1041980:intron 75.0%
CTCCCGCGTACGCAGGGTCC+GGG + chr7_1:79658754-79658773 Msa1041980:intron 75.0%
TCCCGCGTACGCAGGGTCCG+GGG + chr7_1:79658755-79658774 Msa1041980:intron 75.0%
TCCCCGGACCCTGCGTACGC+GGG - chr7_1:79658759-79658778 None:intergenic 75.0%
GCGTACGCAGGGTCCGGGGA+AGG + chr7_1:79658759-79658778 Msa1041980:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 79654941 79661643 79654941 ID=Msa1041980;Name=Msa1041980
chr7_1 mRNA 79654941 79661643 79654941 ID=Msa1041980-mRNA-1;Parent=Msa1041980;Name=Msa1041980-mRNA-1;_AED=0.04;_eAED=0.04;_QI=85|1|1|1|1|1|13|447|647
chr7_1 exon 79654941 79655256 79654941 ID=Msa1041980-mRNA-1:exon:21531;Parent=Msa1041980-mRNA-1
chr7_1 exon 79655347 79655438 79655347 ID=Msa1041980-mRNA-1:exon:21532;Parent=Msa1041980-mRNA-1
chr7_1 exon 79655606 79655705 79655606 ID=Msa1041980-mRNA-1:exon:21533;Parent=Msa1041980-mRNA-1
chr7_1 exon 79657349 79657420 79657349 ID=Msa1041980-mRNA-1:exon:21534;Parent=Msa1041980-mRNA-1
chr7_1 exon 79658149 79658211 79658149 ID=Msa1041980-mRNA-1:exon:21535;Parent=Msa1041980-mRNA-1
chr7_1 exon 79658295 79658435 79658295 ID=Msa1041980-mRNA-1:exon:21536;Parent=Msa1041980-mRNA-1
chr7_1 exon 79658558 79658653 79658558 ID=Msa1041980-mRNA-1:exon:21537;Parent=Msa1041980-mRNA-1
chr7_1 exon 79659335 79659619 79659335 ID=Msa1041980-mRNA-1:exon:21538;Parent=Msa1041980-mRNA-1
chr7_1 exon 79659708 79659858 79659708 ID=Msa1041980-mRNA-1:exon:21539;Parent=Msa1041980-mRNA-1
chr7_1 exon 79659960 79660108 79659960 ID=Msa1041980-mRNA-1:exon:21540;Parent=Msa1041980-mRNA-1
chr7_1 exon 79660195 79660371 79660195 ID=Msa1041980-mRNA-1:exon:21541;Parent=Msa1041980-mRNA-1
chr7_1 exon 79660709 79660975 79660709 ID=Msa1041980-mRNA-1:exon:21542;Parent=Msa1041980-mRNA-1
chr7_1 exon 79661077 79661643 79661077 ID=Msa1041980-mRNA-1:exon:21543;Parent=Msa1041980-mRNA-1
chr7_1 five_prime_UTR 79654941 79655025 79654941 ID=Msa1041980-mRNA-1:five_prime_utr;Parent=Msa1041980-mRNA-1
chr7_1 CDS 79655026 79655256 79655026 ID=Msa1041980-mRNA-1:cds;Parent=Msa1041980-mRNA-1
chr7_1 CDS 79655347 79655438 79655347 ID=Msa1041980-mRNA-1:cds;Parent=Msa1041980-mRNA-1
chr7_1 CDS 79655606 79655705 79655606 ID=Msa1041980-mRNA-1:cds;Parent=Msa1041980-mRNA-1
chr7_1 CDS 79657349 79657420 79657349 ID=Msa1041980-mRNA-1:cds;Parent=Msa1041980-mRNA-1
chr7_1 CDS 79658149 79658211 79658149 ID=Msa1041980-mRNA-1:cds;Parent=Msa1041980-mRNA-1
chr7_1 CDS 79658295 79658435 79658295 ID=Msa1041980-mRNA-1:cds;Parent=Msa1041980-mRNA-1
chr7_1 CDS 79658558 79658653 79658558 ID=Msa1041980-mRNA-1:cds;Parent=Msa1041980-mRNA-1
chr7_1 CDS 79659335 79659619 79659335 ID=Msa1041980-mRNA-1:cds;Parent=Msa1041980-mRNA-1
chr7_1 CDS 79659708 79659858 79659708 ID=Msa1041980-mRNA-1:cds;Parent=Msa1041980-mRNA-1
chr7_1 CDS 79659960 79660108 79659960 ID=Msa1041980-mRNA-1:cds;Parent=Msa1041980-mRNA-1
chr7_1 CDS 79660195 79660371 79660195 ID=Msa1041980-mRNA-1:cds;Parent=Msa1041980-mRNA-1
chr7_1 CDS 79660709 79660975 79660709 ID=Msa1041980-mRNA-1:cds;Parent=Msa1041980-mRNA-1
chr7_1 CDS 79661077 79661196 79661077 ID=Msa1041980-mRNA-1:cds;Parent=Msa1041980-mRNA-1
chr7_1 three_prime_UTR 79661197 79661643 79661197 ID=Msa1041980-mRNA-1:three_prime_utr;Parent=Msa1041980-mRNA-1
Gene Sequence

>Msa1041980

ATGGCGAGCGGTAGTAGTAGAAAATCTCGAAGACGAAGAAGATCCGATGATGACTCTGCATCTGACTCCGACTCCGACCACCGCCGGAAAACTAGTCGCCGGTCACGCCGAGATTCAGATGATGATTCAAGTGACGACAACGATAATAGAACTGGAAGAAAGAAGAAATCTTCCAGAACAATCACAGAAGAGGAAATTTCACAGTACATGGCTAAAAAAGCTCAGAGAAAGGCTACGAAAGTTGCTAAGAAATTGAAGACGAATACAGTATCGGGTTATTCCAATGATTCTAATCCATTTGGTGATACTAATCTCAATGAAAAGTTTGTTTGGCGTAAGAAGATTGAGCGCGATGTTACTCAAGGTGTATCAATTGATTCCTTTTCTGTTAAAGCTGAGAAGAAAAGACAAGTAGAAAGGATGGCAGAAATTGAAAAGGTGAAAAAGAGGAGAGAGGAAAGGGCACTTGAGAAAGCACAACATGAAGAAGAAATGGCATTGTTAGCTAGAGAACGTGCTCGAGCTGAGTTCCAGGACTGGGAAAAAAAGGAAGAGGAGTTCCATTTTGATCAAAGCAAAGTCAGGTCAGAGATTAGATTGCGTGAAGGGCGTGCCAGGCCAATTGATGTCCTAACCAAGCATCTCAATGGCTCTGATGATTTGGATATAGAAATAAATGAACCATATATGGTCTTCAAGGGTTTGACGGTTAAAGAAATGAGTGAACTTCGTGACGACATCAAAATGCATCTGGATCTTGACAGGGCAACACCAACCCATGTGGAATATTGGGAGGCTCTCCTTGTGGTGTGTGATTGGGAGCTAGCTGAATCTCGAAAAAAGGATGCAATTGATCGAGCTAGGGTGCGTGGAGAAGAACCTCCTGCTGAGCTGCTTGCTGAACAAAGGGGTCTGCATTCCAGTGTTGAGCCAGATGTGAAGGACCTTTTACATGGAAAGACACGTACAGAGTTGGAAGCCTTACAGGCTCACATTGAGTCAGAGATGCGTACTGGTACAGCAAAGGTGGTTGAGTACTGGGAGGCCATTTTAAAACACCTCCACATATACAAGGCCAAGGCTTGTTTAAAGGAGATCCATGCTAAAATGTTACGTAAGCATTTGCAACGTCTTGAGCAACCATTAGAGGATGAAGATAAACCGGAGCGTGCTCTTGACATGATACCTGAGGAGGCATATACTGAGGAGGATGAGGAGGAGGATGCTAAAGTAGTCCGTTCTGCTGATGAATCATTTTCACCAGAGCCCATTAGAGAGAATCAAGAAGCTGAAGATGAGGCTGGATCATTTTCACCACAACTGTTGCATGATGATGAAAATGAGGAAGCTATTGATCCTGAAGAGGACAAAGCTATACTGGAGCGGAAACGTATGGCTGTAATGGAAGAGCAGCAAAAACGAATTCAGGAAGCAATGGCATCAAAGCCAGCTCCATCTGAAGATAATTTAGAGTTGAAAGCCTTTAAAGCTATGGGAGCCATGGAGGATGGAGACGCAGTGTTTGGATCTGGAGCTGAAGTGAGCCTCGATTCACAGGTTTATTGGTGGCATGACAAGTACAGACCAAGGAAGCCAAAGTATTTCAACCGTGTTCACACCGGATATGAGTGGAACAAATATAACCAGACTCACTATGATCATGACAACCCACCTCCAAAGATTGTGCAAGGGTACAAATTTAACATTTTCTATCCTGATCTTGTAGACAAGATAAAAGCCCCGAACTACACTATAGAGAAAGACGGCGGCAATGGGGAGACATGCATTATTAGATTCCATGCAGGACCACCATATGAAGATATAGCTTTCCGCATTGTAAACAAAGAATGGGAATACTCTCACAAGAAAGGTTTTAAATGCACATTCGAACGTGGAATTCTGCATGTGTACTTCAATTTCAAACGCCACCGCTACCGCCGATAA

Protein sequence

>Msa1041980

MASGSSRKSRRRRRSDDDSASDSDSDHRRKTSRRSRRDSDDDSSDDNDNRTGRKKKSSRTITEEEISQYMAKKAQRKATKVAKKLKTNTVSGYSNDSNPFGDTNLNEKFVWRKKIERDVTQGVSIDSFSVKAEKKRQVERMAEIEKVKKRREERALEKAQHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRARPIDVLTKHLNGSDDLDIEINEPYMVFKGLTVKEMSELRDDIKMHLDLDRATPTHVEYWEALLVVCDWELAESRKKDAIDRARVRGEEPPAELLAEQRGLHSSVEPDVKDLLHGKTRTELEALQAHIESEMRTGTAKVVEYWEAILKHLHIYKAKACLKEIHAKMLRKHLQRLEQPLEDEDKPERALDMIPEEAYTEEDEEEDAKVVRSADESFSPEPIRENQEAEDEAGSFSPQLLHDDENEEAIDPEEDKAILERKRMAVMEEQQKRIQEAMASKPAPSEDNLELKAFKAMGAMEDGDAVFGSGAEVSLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKIKAPNYTIEKDGGNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRHRYRR*