Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042090 | KEH24089.1 | 83.095 | 420 | 23 | 2 | 1 | 372 | 1 | 420 | 0.0 | 656 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042090 | sp|Q8S9J0|TAUE4_ARATH | 58.894 | 416 | 116 | 3 | 5 | 372 | 9 | 417 | 7.39e-153 | 443 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042090 | A0A072U313 | 83.095 | 420 | 23 | 2 | 1 | 372 | 1 | 420 | 0.0 | 656 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1042090 | Msa1079900 | 0.807778 | 4.280728e-50 | -8.615850e-47 |
| Msa1042090 | Msa1167560 | 0.805673 | 1.191426e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042090 | MtrunA17_Chr7g0265481 | 82.619 | 420 | 25 | 3 | 1 | 372 | 1 | 420 | 0.0 | 655 |
| Msa1042090 | MtrunA17_Chr1g0179621 | 58.974 | 429 | 113 | 7 | 1 | 372 | 1 | 423 | 2.12e-154 | 444 |
| Msa1042090 | MtrunA17_Chr8g0373471 | 42.368 | 380 | 157 | 5 | 45 | 372 | 57 | 426 | 6.38e-85 | 267 |
| Msa1042090 | MtrunA17_Chr3g0139541 | 48.113 | 318 | 149 | 7 | 21 | 333 | 34 | 340 | 6.58e-81 | 256 |
| Msa1042090 | MtrunA17_Chr5g0403901 | 51.908 | 262 | 118 | 3 | 45 | 304 | 64 | 319 | 6.98e-77 | 246 |
| Msa1042090 | MtrunA17_Chr8g0380211 | 44.444 | 315 | 152 | 5 | 22 | 326 | 41 | 342 | 9.16e-73 | 236 |
| Msa1042090 | MtrunA17_Chr1g0157751 | 43.885 | 278 | 143 | 4 | 35 | 304 | 34 | 306 | 1.72e-66 | 218 |
| Msa1042090 | MtrunA17_Chr8g0380191 | 41.014 | 217 | 88 | 2 | 110 | 326 | 10 | 186 | 1.09e-44 | 157 |
| Msa1042090 | MtrunA17_Chr2g0280401 | 30.081 | 246 | 149 | 5 | 56 | 283 | 55 | 295 | 1.38e-21 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042090 | AT2G36630.1 | 58.894 | 416 | 116 | 3 | 5 | 372 | 9 | 417 | 7.52e-154 | 443 |
| Msa1042090 | AT2G25737.2 | 50.699 | 286 | 125 | 3 | 54 | 333 | 71 | 346 | 3.31e-82 | 257 |
| Msa1042090 | AT2G25737.1 | 50.699 | 286 | 125 | 3 | 54 | 333 | 71 | 346 | 1.80e-81 | 258 |
| Msa1042090 | AT4G21250.1 | 30.000 | 290 | 177 | 6 | 29 | 304 | 18 | 295 | 6.47e-24 | 103 |
| Msa1042090 | AT1G11540.2 | 27.835 | 291 | 185 | 6 | 1 | 282 | 1 | 275 | 2.44e-23 | 102 |
| Msa1042090 | AT1G61740.1 | 29.348 | 276 | 168 | 7 | 24 | 282 | 14 | 279 | 3.47e-23 | 101 |
| Msa1042090 | AT1G11540.1 | 29.500 | 200 | 124 | 4 | 92 | 282 | 1 | 192 | 1.13e-22 | 99.0 |
| Msa1042090 | AT4G21260.1 | 26.812 | 276 | 150 | 7 | 18 | 283 | 9 | 242 | 1.99e-17 | 84.0 |
Find 89 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCAAGGTCTTTCTTTA+AGG | 0.115168 | 7_1:+79830348 | Msa1042090:CDS |
| AGTGGTCAATTGCGAATTTC+TGG | 0.142310 | 7_1:-79829513 | None:intergenic |
| CCTATGCTTACTCTTATTAT+TGG | 0.163814 | 7_1:+79829898 | Msa1042090:CDS |
| CTATTGCACTAGTGGTATTT+TGG | 0.180174 | 7_1:+79831298 | Msa1042090:CDS |
| AGAAAATTGCTTAGAATTCT+TGG | 0.183484 | 7_1:+79832188 | Msa1042090:CDS |
| CTTATCATTATTCTCTTTAT+AGG | 0.205551 | 7_1:+79830238 | Msa1042090:CDS |
| TCTTAAGTGGAAAAGGATTT+TGG | 0.208098 | 7_1:+79830857 | Msa1042090:CDS |
| GCCTCAATTATTGGCTTTCT+AGG | 0.224694 | 7_1:+79829826 | Msa1042090:CDS |
| CTTGCTTTGGCCTCAATTAT+TGG | 0.227645 | 7_1:+79829817 | Msa1042090:CDS |
| CTTACTACTTCAGGTCATTA+AGG | 0.231663 | 7_1:+79830905 | Msa1042090:CDS |
| GGCTTTCTAGGATCTGCTTT+TGG | 0.237402 | 7_1:+79829838 | Msa1042090:CDS |
| GGTTTCTTTCTTACTACTTC+AGG | 0.259142 | 7_1:+79830896 | Msa1042090:CDS |
| TTGTTGGATGACGCACTCTT+AGG | 0.315364 | 7_1:-79830099 | None:intergenic |
| GTTATTTATAGGTATGATAA+TGG | 0.318227 | 7_1:+79830048 | Msa1042090:intron |
| CCTCTTCACAGTGTCTGTTT+TGG | 0.327724 | 7_1:+79832139 | Msa1042090:CDS |
| GTTGGAGGGCTACTTGGTTC+TGG | 0.338070 | 7_1:+79831459 | Msa1042090:CDS |
| TCTTCAAGGTCTTTCTTTAA+GGG | 0.338871 | 7_1:+79830349 | Msa1042090:CDS |
| GCCTAGTTGGAGACTTGCTT+TGG | 0.339589 | 7_1:+79829804 | Msa1042090:CDS |
| TGTGCACTATGTGGAATCTT+AGG | 0.340909 | 7_1:+79831429 | Msa1042090:CDS |
| GCTAGATCATAATCTAATAT+TGG | 0.349834 | 7_1:-79830130 | None:intergenic |
| CAAAATACCACTAGTGCAAT+AGG | 0.361717 | 7_1:-79831297 | None:intergenic |
| ATCTTAGGTGGGACCGTTGG+AGG | 0.395223 | 7_1:+79831444 | Msa1042090:CDS |
| GTTCCAATCTTAAGTGGAAA+AGG | 0.406736 | 7_1:+79830850 | Msa1042090:CDS |
| AAGCTTCACATATACATTCC+AGG | 0.407619 | 7_1:-79831374 | None:intergenic |
| AACAAAAGACACAGAGGGAG+GGG | 0.411104 | 7_1:-79829484 | None:intergenic |
| GAGAATCGCAACGGAGAAAC+CGG | 0.412752 | 7_1:-79829576 | None:intergenic |
| AGGTCTGCAGTGTATGGTAT+TGG | 0.414722 | 7_1:+79831032 | Msa1042090:CDS |
| TTGTTAATTGCAGAAAGAAA+TGG | 0.424199 | 7_1:+79830483 | Msa1042090:intron |
| GGGACCGTTGGAGGGCTACT+TGG | 0.428854 | 7_1:+79831453 | Msa1042090:CDS |
| TGCAGGAATTGGAGCCTAGT+TGG | 0.431727 | 7_1:+79829791 | Msa1042090:intron |
| TTCATCCTGTACCTCGTATC+CGG | 0.432334 | 7_1:+79829557 | Msa1042090:CDS |
| GAGGTACAGGATGAATGTTT+TGG | 0.440423 | 7_1:-79829549 | None:intergenic |
| TTATTTATAGGTATGATAAT+GGG | 0.441362 | 7_1:+79830049 | Msa1042090:intron |
| TTTGGATAGGAACTTCTTCA+AGG | 0.444034 | 7_1:+79830335 | Msa1042090:intron |
| ACCGTTGGTGGTGTTGGTGG+TGG | 0.448909 | 7_1:+79829862 | Msa1042090:CDS |
| GGTCTGCAGTGTATGGTATT+GGG | 0.449354 | 7_1:+79831033 | Msa1042090:CDS |
| AAGGTATCATGCTGTGACTA+TGG | 0.452064 | 7_1:+79833360 | Msa1042090:intron |
| GTTGGTGGTGTTGGTGGTGG+TGG | 0.454327 | 7_1:+79829865 | Msa1042090:CDS |
| TACATACCTGTAAGGAGAAA+AGG | 0.464417 | 7_1:-79831057 | None:intergenic |
| TCTCCATCTCTTCAATTCCA+TGG | 0.464521 | 7_1:+79829644 | Msa1042090:CDS |
| TTTCAACCTATGCTTATGCT+TGG | 0.465503 | 7_1:+79830160 | Msa1042090:CDS |
| TATGTGAAGCTTCAATTGAA+TGG | 0.468378 | 7_1:+79831385 | Msa1042090:CDS |
| TCAGTTTCCTATTGCACTAG+TGG | 0.468918 | 7_1:+79831290 | Msa1042090:intron |
| AGGACAGTGATGAGCCAGTA+AGG | 0.475643 | 7_1:-79830217 | None:intergenic |
| TTTGGAACCGTTGGTGGTGT+TGG | 0.485288 | 7_1:+79829856 | Msa1042090:CDS |
| GGAAAGAGCAGCAGCAGACT+TGG | 0.486427 | 7_1:-79829929 | None:intergenic |
| CTTATGCTTGGTATCACTGT+TGG | 0.488422 | 7_1:+79830172 | Msa1042090:CDS |
| GGAACCGTTGGTGGTGTTGG+TGG | 0.502109 | 7_1:+79829859 | Msa1042090:CDS |
| TTTGGTGTTAATGATTGTGT+GGG | 0.524681 | 7_1:+79830875 | Msa1042090:CDS |
| GAAAGAAGAGACTCTTCTAA+AGG | 0.532361 | 7_1:+79830384 | Msa1042090:CDS |
| CTATAAAGAGAATAATGATA+AGG | 0.533759 | 7_1:-79830237 | None:intergenic |
| CAACAAAAGACACAGAGGGA+GGG | 0.536609 | 7_1:-79829485 | None:intergenic |
| GAGGATGAGTACAGGAAACC+TGG | 0.540526 | 7_1:+79831356 | Msa1042090:CDS |
| TACAAGAAGAGGATGAGTAC+AGG | 0.547246 | 7_1:+79831348 | Msa1042090:CDS |
| ACCACCACCAACACCACCAA+CGG | 0.547510 | 7_1:-79829863 | None:intergenic |
| TATTATCATACATACCTGTA+AGG | 0.550069 | 7_1:-79831065 | None:intergenic |
| AATCCAAAACCGATAAAACT+TGG | 0.553743 | 7_1:+79829675 | Msa1042090:CDS |
| ATGTCAAGGTCTGCAGTGTA+TGG | 0.557509 | 7_1:+79831026 | Msa1042090:CDS |
| GAGGATGAATACAATGATTG+AGG | 0.567259 | 7_1:-79832216 | None:intergenic |
| TCTTAGGTGGGACCGTTGGA+GGG | 0.569227 | 7_1:+79831445 | Msa1042090:CDS |
| GAGCCATGGAATTGAAGAGA+TGG | 0.569660 | 7_1:-79829647 | None:intergenic |
| TGGTTTGCAGAATGATGTCA+AGG | 0.570401 | 7_1:+79831012 | Msa1042090:intron |
| AGAAACCGGATACGAGGTAC+AGG | 0.571369 | 7_1:-79829562 | None:intergenic |
| TCCTAGAAAGCCAATAATTG+AGG | 0.572327 | 7_1:-79829827 | None:intergenic |
| GTGACTATGGCATATGCGGT+TGG | 0.590977 | 7_1:+79833373 | Msa1042090:CDS |
| TCTTTAAGGGAACTGAGATG+TGG | 0.592420 | 7_1:+79830362 | Msa1042090:CDS |
| GGAGGGCTACTTGGTTCTGG+AGG | 0.593688 | 7_1:+79831462 | Msa1042090:CDS |
| TGACACGGAATATGATCCGT+TGG | 0.595281 | 7_1:+79830694 | Msa1042090:CDS |
| ACAACAAAAGACACAGAGGG+AGG | 0.600323 | 7_1:-79829486 | None:intergenic |
| ACAAAAGACACAGAGGGAGG+GGG | 0.602584 | 7_1:-79829483 | None:intergenic |
| TGAAGCAATGAAGTTGTACA+AGG | 0.607163 | 7_1:+79831323 | Msa1042090:CDS |
| TGTACAAGGATTACAAGAAG+AGG | 0.614235 | 7_1:+79831337 | Msa1042090:CDS |
| CCAAAACAGACACTGTGAAG+AGG | 0.614270 | 7_1:-79832139 | None:intergenic |
| GCCAAAGCAAGTCTCCAACT+AGG | 0.614402 | 7_1:-79829805 | None:intergenic |
| GCACTATGTGGAATCTTAGG+TGG | 0.614626 | 7_1:+79831432 | Msa1042090:CDS |
| CAACGGAGAAACCGGATACG+AGG | 0.616746 | 7_1:-79829568 | None:intergenic |
| TTTGGTGGAAAAGGACATAG+TGG | 0.622803 | 7_1:-79829531 | None:intergenic |
| GGACAGTGATGAGCCAGTAA+GGG | 0.622892 | 7_1:-79830216 | None:intergenic |
| AGAACCAAGTAGCCCTCCAA+CGG | 0.623795 | 7_1:-79831457 | None:intergenic |
| TGCTGTGACTATGGCATATG+CGG | 0.625897 | 7_1:+79833369 | Msa1042090:CDS |
| GTGATACCAAGCATAAGCAT+AGG | 0.629811 | 7_1:-79830166 | None:intergenic |
| GGAATCTTAGGTGGGACCGT+TGG | 0.631221 | 7_1:+79831441 | Msa1042090:CDS |
| CCAATAATAAGAGTAAGCAT+AGG | 0.636816 | 7_1:-79829898 | None:intergenic |
| CACTATGTGGAATCTTAGGT+GGG | 0.641979 | 7_1:+79831433 | Msa1042090:CDS |
| ATTGCAGAAAGAAATGGCAA+AGG | 0.644245 | 7_1:+79830489 | Msa1042090:intron |
| AACAACAACAAAAGACACAG+AGG | 0.648660 | 7_1:-79829490 | None:intergenic |
| ACAACAACAAAAGACACAGA+GGG | 0.648796 | 7_1:-79829489 | None:intergenic |
| ATATGCAGTTCTAATTGACA+CGG | 0.678566 | 7_1:+79830679 | Msa1042090:intron |
| AAGAGCGGAGAGAATCGCAA+CGG | 0.698430 | 7_1:-79829585 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATCTATATATATGATTT+TGG | + | chr7_1:79830992-79831011 | Msa1042090:intron | 10.0% |
| !! | TTATTTATAGGTATGATAAT+GGG | + | chr7_1:79830049-79830068 | Msa1042090:intron | 15.0% |
| !! | AAAAAGAAAAGACATATATT+CGG | - | chr7_1:79830318-79830337 | None:intergenic | 15.0% |
| !!! | ATCTATTTTCAAATTTATGT+TGG | + | chr7_1:79830558-79830577 | Msa1042090:intron | 15.0% |
| !! | AAATGAAAAATATACAAATC+TGG | + | chr7_1:79830618-79830637 | Msa1042090:intron | 15.0% |
| !! | TAAGTTATAGTATAATACAT+AGG | + | chr7_1:79832317-79832336 | Msa1042090:intron | 15.0% |
| !! | ATTCATAAATCTAATACATA+AGG | + | chr7_1:79833190-79833209 | Msa1042090:intron | 15.0% |
| !!! | CAAAGAGTTAATGTTTTTAA+CGG | - | chr7_1:79829761-79829780 | None:intergenic | 20.0% |
| !! | AAAACGGAATTAATTACATT+TGG | - | chr7_1:79829953-79829972 | None:intergenic | 20.0% |
| !!! | AATTAATTCCGTTTTACATA+AGG | + | chr7_1:79829958-79829977 | Msa1042090:intron | 20.0% |
| !! | AAATGAAACCTTATGTAAAA+CGG | - | chr7_1:79829969-79829988 | None:intergenic | 20.0% |
| !!! | TTGTTGACTATGTTATTTAT+AGG | + | chr7_1:79830037-79830056 | Msa1042090:intron | 20.0% |
| !! | GTTATTTATAGGTATGATAA+TGG | + | chr7_1:79830048-79830067 | Msa1042090:intron | 20.0% |
| !!! | AATATTGGAACATTTTTTGT+TGG | - | chr7_1:79830118-79830137 | None:intergenic | 20.0% |
| !! | CTATAAAGAGAATAATGATA+AGG | - | chr7_1:79830240-79830259 | None:intergenic | 20.0% |
| !! | CTTATCATTATTCTCTTTAT+AGG | + | chr7_1:79830238-79830257 | Msa1042090:CDS | 20.0% |
| !!! | GAATATATGTCTTTTCTTTT+TGG | + | chr7_1:79830317-79830336 | Msa1042090:intron | 20.0% |
| !! | AAATTTATGTTGGATTCATT+AGG | + | chr7_1:79830568-79830587 | Msa1042090:intron | 20.0% |
| !! | AATTAATAGAAATAGTAGAG+AGG | - | chr7_1:79830937-79830956 | None:intergenic | 20.0% |
| !! | ACAAATTGTACTTATGAAAT+TGG | - | chr7_1:79831094-79831113 | None:intergenic | 20.0% |
| !! | ATGTAATGATGAAGTTAATT+TGG | + | chr7_1:79831127-79831146 | Msa1042090:intron | 20.0% |
| !! | TGTAATGATGAAGTTAATTT+GGG | + | chr7_1:79831128-79831147 | Msa1042090:intron | 20.0% |
| !!! | AGCTAGTATTCTTTTAAAAA+AGG | - | chr7_1:79831239-79831258 | None:intergenic | 20.0% |
| !! | AAAAGCTTGTATAAATTTCA+AGG | + | chr7_1:79832509-79832528 | Msa1042090:intron | 20.0% |
| !! | TATTTATTACTTGAAGGAAA+TGG | - | chr7_1:79832594-79832613 | None:intergenic | 20.0% |
| !!! | TAGCTTTATTTATTACTTGA+AGG | - | chr7_1:79832600-79832619 | None:intergenic | 20.0% |
| !! | TTTCTGTATTCAATAAACAA+AGG | + | chr7_1:79832887-79832906 | Msa1042090:intron | 20.0% |
| !! | ATTACACTTGTTTATATTTG+TGG | + | chr7_1:79832974-79832993 | Msa1042090:intron | 20.0% |
| !! | ATTCATTCAGTTGAAAAAAT+TGG | + | chr7_1:79832998-79833017 | Msa1042090:intron | 20.0% |
| !! | ATAACAAAAGAGAATAACTT+TGG | - | chr7_1:79833098-79833117 | None:intergenic | 20.0% |
| !! | TATATTGAACGAAATAATTG+AGG | + | chr7_1:79833144-79833163 | Msa1042090:intron | 20.0% |
| !!! | AATCTAATACATAAGGTTTT+AGG | + | chr7_1:79833197-79833216 | Msa1042090:intron | 20.0% |
| ! | GCTAGATCATAATCTAATAT+TGG | - | chr7_1:79830133-79830152 | None:intergenic | 25.0% |
| !! | TATGTCTTTTCTTTTTGGAT+AGG | + | chr7_1:79830322-79830341 | Msa1042090:intron | 25.0% |
| ! | TTGTTAATTGCAGAAAGAAA+TGG | + | chr7_1:79830483-79830502 | Msa1042090:intron | 25.0% |
| ! | TATACAAATCTGGATTCATA+TGG | + | chr7_1:79830628-79830647 | Msa1042090:intron | 25.0% |
| !!! | CAAAGAAGTTTTAATACCAT+AGG | - | chr7_1:79830740-79830759 | None:intergenic | 25.0% |
| ! | TAAAACTTCCATCTACTTAT+TGG | + | chr7_1:79830774-79830793 | Msa1042090:intron | 25.0% |
| !! | TATTTTGTTCCAATCTTAAG+TGG | + | chr7_1:79830844-79830863 | Msa1042090:CDS | 25.0% |
| ! | TATTATCATACATACCTGTA+AGG | - | chr7_1:79831068-79831087 | None:intergenic | 25.0% |
| ! | GTTGATTAGAAACAGATTTA+AGG | - | chr7_1:79831915-79831934 | None:intergenic | 25.0% |
| ! | GAGAACTGAGAATTAATTAA+AGG | - | chr7_1:79831942-79831961 | None:intergenic | 25.0% |
| ! | AGGACTGTATAGAAATTAAT+AGG | + | chr7_1:79831989-79832008 | Msa1042090:intron | 25.0% |
| ! | AGAAAATTGCTTAGAATTCT+TGG | + | chr7_1:79832188-79832207 | Msa1042090:CDS | 25.0% |
| ! | ATACAGAACCATGAATTTAT+GGG | + | chr7_1:79832411-79832430 | Msa1042090:intron | 25.0% |
| !! | TCAATGTTTATGTTTCTATG+TGG | + | chr7_1:79832832-79832851 | Msa1042090:intron | 25.0% |
| ! | TGGAAATGATAATATACCAT+TGG | + | chr7_1:79833018-79833037 | Msa1042090:intron | 25.0% |
| ! | CAAAAAAAATACTATAACCC+AGG | - | chr7_1:79833282-79833301 | None:intergenic | 25.0% |
| ! | ATACCTTTACAAAACATGAT+TGG | - | chr7_1:79833347-79833366 | None:intergenic | 25.0% |
| ! | AGATGAATTTTCGTGGTAAT+TGG | - | chr7_1:79829627-79829646 | None:intergenic | 30.0% |
| AATCCAAAACCGATAAAACT+TGG | + | chr7_1:79829675-79829694 | Msa1042090:CDS | 30.0% | |
| CCAATAATAAGAGTAAGCAT+AGG | - | chr7_1:79829901-79829920 | None:intergenic | 30.0% | |
| CCTATGCTTACTCTTATTAT+TGG | + | chr7_1:79829898-79829917 | Msa1042090:CDS | 30.0% | |
| TTCTTCAAGGTCTTTCTTTA+AGG | + | chr7_1:79830348-79830367 | Msa1042090:CDS | 30.0% | |
| TCTTCAAGGTCTTTCTTTAA+GGG | + | chr7_1:79830349-79830368 | Msa1042090:CDS | 30.0% | |
| ! | ACAACTTTTGTTAATTCTCG+TGG | + | chr7_1:79830517-79830536 | Msa1042090:CDS | 30.0% |
| CAATTAGAACTGCATATTTC+AGG | - | chr7_1:79830676-79830695 | None:intergenic | 30.0% | |
| ! | ATATGCAGTTCTAATTGACA+CGG | + | chr7_1:79830679-79830698 | Msa1042090:intron | 30.0% |
| !!! | ATAGGAGTTTTTTCTTCTCT+AGG | - | chr7_1:79830722-79830741 | None:intergenic | 30.0% |
| TAGAGAAGAAAAAACTCCTA+TGG | + | chr7_1:79830721-79830740 | Msa1042090:CDS | 30.0% | |
| ! | AATCCTTTTCCACTTAAGAT+TGG | - | chr7_1:79830856-79830875 | None:intergenic | 30.0% |
| ! | TCTTAAGTGGAAAAGGATTT+TGG | + | chr7_1:79830857-79830876 | Msa1042090:CDS | 30.0% |
| !!! | TTTTGGTGTTAATGATTGTG+TGG | + | chr7_1:79830874-79830893 | Msa1042090:CDS | 30.0% |
| !! | TTTGGTGTTAATGATTGTGT+GGG | + | chr7_1:79830875-79830894 | Msa1042090:CDS | 30.0% |
| TATGTGAAGCTTCAATTGAA+TGG | + | chr7_1:79831385-79831404 | Msa1042090:CDS | 30.0% | |
| !! | AAGGTTTAAGAGTTGATGAA+AGG | - | chr7_1:79831896-79831915 | None:intergenic | 30.0% |
| CTGAGAATTAATTAAAGGCA+TGG | - | chr7_1:79831937-79831956 | None:intergenic | 30.0% | |
| !! | ACTTTTTCTCTTACAAGACA+TGG | - | chr7_1:79831966-79831985 | None:intergenic | 30.0% |
| !!! | AATGCAACACTTTTTCTTTC+AGG | + | chr7_1:79832357-79832376 | Msa1042090:intron | 30.0% |
| !! | CTTTTTCTTTCAGGTGTAAT+TGG | + | chr7_1:79832366-79832385 | Msa1042090:intron | 30.0% |
| GATACAGAACCATGAATTTA+TGG | + | chr7_1:79832410-79832429 | Msa1042090:intron | 30.0% | |
| CTAAGAATCCCATAAATTCA+TGG | - | chr7_1:79832422-79832441 | None:intergenic | 30.0% | |
| CATGAATTTATGGGATTCTT+AGG | + | chr7_1:79832420-79832439 | Msa1042090:intron | 30.0% | |
| GTCATCATATCATAAATCAC+TGG | - | chr7_1:79832458-79832477 | None:intergenic | 30.0% | |
| GCTTGTATAAATTTCAAGGT+AGG | + | chr7_1:79832513-79832532 | Msa1042090:intron | 30.0% | |
| TAAATTTCAAGGTAGGACAA+AGG | + | chr7_1:79832520-79832539 | Msa1042090:intron | 30.0% | |
| CAACCACAAATCTTATAGAA+GGG | - | chr7_1:79832925-79832944 | None:intergenic | 30.0% | |
| TCAACCACAAATCTTATAGA+AGG | - | chr7_1:79832926-79832945 | None:intergenic | 30.0% | |
| ! | TAGCCAATCATGTTTTGTAA+AGG | + | chr7_1:79833341-79833360 | Msa1042090:intron | 30.0% |
| ACAACAACAAAAGACACAGA+GGG | - | chr7_1:79829492-79829511 | None:intergenic | 35.0% | |
| AACAACAACAAAAGACACAG+AGG | - | chr7_1:79829493-79829512 | None:intergenic | 35.0% | |
| !!! | GATGAATGTTTTGGTGGAAA+AGG | - | chr7_1:79829543-79829562 | None:intergenic | 35.0% |
| ! | ATTTTGTGTGAGGTAAAGAG+CGG | - | chr7_1:79829603-79829622 | None:intergenic | 35.0% |
| ! | GGTAATTGGTATTTTGTGTG+AGG | - | chr7_1:79829613-79829632 | None:intergenic | 35.0% |
| AACGTGTTGTGAGTAACATA+CGG | - | chr7_1:79829702-79829721 | None:intergenic | 35.0% | |
| TCCTAGAAAGCCAATAATTG+AGG | - | chr7_1:79829830-79829849 | None:intergenic | 35.0% | |
| CAATGCTTGATTAGAAACAG+AGG | + | chr7_1:79829989-79830008 | Msa1042090:intron | 35.0% | |
| TTTCAACCTATGCTTATGCT+TGG | + | chr7_1:79830160-79830179 | Msa1042090:CDS | 35.0% | |
| !!! | TTAGTGTTGTTTTCCCTTAC+TGG | + | chr7_1:79830203-79830222 | Msa1042090:CDS | 35.0% |
| TTTGGATAGGAACTTCTTCA+AGG | + | chr7_1:79830335-79830354 | Msa1042090:intron | 35.0% | |
| GAAAGAAGAGACTCTTCTAA+AGG | + | chr7_1:79830384-79830403 | Msa1042090:CDS | 35.0% | |
| ATTGCAGAAAGAAATGGCAA+AGG | + | chr7_1:79830489-79830508 | Msa1042090:intron | 35.0% | |
| ! | TTTTCTTCTCTAGGTACCAA+CGG | - | chr7_1:79830713-79830732 | None:intergenic | 35.0% |
| ACTTCCATCTACTTATTGGT+TGG | + | chr7_1:79830778-79830797 | Msa1042090:intron | 35.0% | |
| GTTCCAATCTTAAGTGGAAA+AGG | + | chr7_1:79830850-79830869 | Msa1042090:CDS | 35.0% | |
| GGTTTCTTTCTTACTACTTC+AGG | + | chr7_1:79830896-79830915 | Msa1042090:CDS | 35.0% | |
| CTTACTACTTCAGGTCATTA+AGG | + | chr7_1:79830905-79830924 | Msa1042090:CDS | 35.0% | |
| TACATACCTGTAAGGAGAAA+AGG | - | chr7_1:79831060-79831079 | None:intergenic | 35.0% | |
| AACAGAGAGAAAAACATGCA+TGG | - | chr7_1:79831270-79831289 | None:intergenic | 35.0% | |
| CAAAATACCACTAGTGCAAT+AGG | - | chr7_1:79831300-79831319 | None:intergenic | 35.0% | |
| ! | CTATTGCACTAGTGGTATTT+TGG | + | chr7_1:79831298-79831317 | Msa1042090:CDS | 35.0% |
| TGAAGCAATGAAGTTGTACA+AGG | + | chr7_1:79831323-79831342 | Msa1042090:CDS | 35.0% | |
| TGTACAAGGATTACAAGAAG+AGG | + | chr7_1:79831337-79831356 | Msa1042090:CDS | 35.0% | |
| AAGCTTCACATATACATTCC+AGG | - | chr7_1:79831377-79831396 | None:intergenic | 35.0% | |
| ! | ATTGTGTTTTGTGCACTATG+TGG | + | chr7_1:79831420-79831439 | Msa1042090:CDS | 35.0% |
| TCTATATGTACTGTACCTGA+GGG | - | chr7_1:79831530-79831549 | None:intergenic | 35.0% | |
| ! | GTCAAGCTTGGTATTTTATC+TGG | + | chr7_1:79831647-79831666 | Msa1042090:intron | 35.0% |
| AAATTGCCCAAGTCTAAGAA+GGG | - | chr7_1:79831752-79831771 | None:intergenic | 35.0% | |
| TAAATTGCCCAAGTCTAAGA+AGG | - | chr7_1:79831753-79831772 | None:intergenic | 35.0% | |
| ! | CTTGGGCAATTTAACTTACA+AGG | + | chr7_1:79831760-79831779 | Msa1042090:intron | 35.0% |
| !!! | CTTACAAGGATTTTGATTGC+AGG | + | chr7_1:79831774-79831793 | Msa1042090:intron | 35.0% |
| ! | GTTTTCATCATCATTGTCTG+TGG | + | chr7_1:79831828-79831847 | Msa1042090:intron | 35.0% |
| !! | TGAAAGGTACCATAAGGAAT+GGG | - | chr7_1:79831880-79831899 | None:intergenic | 35.0% |
| !! | ATGAAAGGTACCATAAGGAA+TGG | - | chr7_1:79831881-79831900 | None:intergenic | 35.0% |
| !! | AGTTGATGAAAGGTACCATA+AGG | - | chr7_1:79831886-79831905 | None:intergenic | 35.0% |
| CTTGTAAGAGAAAAAGTGAG+AGG | + | chr7_1:79831969-79831988 | Msa1042090:intron | 35.0% | |
| GAGGATGAATACAATGATTG+AGG | - | chr7_1:79832219-79832238 | None:intergenic | 35.0% | |
| ATCATTGTATTCATCCTCTC+AGG | + | chr7_1:79832221-79832240 | Msa1042090:intron | 35.0% | |
| TCATTGTATTCATCCTCTCA+GGG | + | chr7_1:79832222-79832241 | Msa1042090:intron | 35.0% | |
| ! | GAATCTGATTGATTTACCCA+TGG | - | chr7_1:79832270-79832289 | None:intergenic | 35.0% |
| ! | GACCAAAAAAGTGCACATTA+TGG | + | chr7_1:79832475-79832494 | Msa1042090:intron | 35.0% |
| !!! | CTCCATAATGTGCACTTTTT+TGG | - | chr7_1:79832480-79832499 | None:intergenic | 35.0% |
| AAATGTAGCCAGCAATGAAT+TGG | - | chr7_1:79832858-79832877 | None:intergenic | 35.0% | |
| CACAAATCTTATAGAAGGGA+AGG | - | chr7_1:79832921-79832940 | None:intergenic | 35.0% | |
| CTTCCCTTCTATAAGATTTG+TGG | + | chr7_1:79832919-79832938 | Msa1042090:intron | 35.0% | |
| TATACCATTGGTCCTACTAT+TGG | + | chr7_1:79833030-79833049 | Msa1042090:intron | 35.0% | |
| !!! | TAAGGTTTTAGGTGAAGATG+TGG | + | chr7_1:79833208-79833227 | Msa1042090:intron | 35.0% |
| GATTAACTGCATAAGTGAGT+TGG | - | chr7_1:79833237-79833256 | None:intergenic | 35.0% | |
| TGAACTTGACTTCAAATTCC+TGG | + | chr7_1:79833261-79833280 | Msa1042090:intron | 35.0% | |
| GAACTTGACTTCAAATTCCT+GGG | + | chr7_1:79833262-79833281 | Msa1042090:intron | 35.0% | |
| AGTGGTCAATTGCGAATTTC+TGG | - | chr7_1:79829516-79829535 | None:intergenic | 40.0% | |
| TTTGGTGGAAAAGGACATAG+TGG | - | chr7_1:79829534-79829553 | None:intergenic | 40.0% | |
| !! | GTACAGGATGAATGTTTTGG+TGG | - | chr7_1:79829549-79829568 | None:intergenic | 40.0% |
| ! | GAGGTACAGGATGAATGTTT+TGG | - | chr7_1:79829552-79829571 | None:intergenic | 40.0% |
| ! | GAGATGGAGATGAATTTTCG+TGG | - | chr7_1:79829634-79829653 | None:intergenic | 40.0% |
| TCTCCATCTCTTCAATTCCA+TGG | + | chr7_1:79829644-79829663 | Msa1042090:CDS | 40.0% | |
| ! | TTTTGGATTCGTAAGAGCCA+TGG | - | chr7_1:79829664-79829683 | None:intergenic | 40.0% |
| !! | ACATACGGGCCAAGTTTTAT+CGG | - | chr7_1:79829687-79829706 | None:intergenic | 40.0% |
| ACGTGTTGTGAGTAACATAC+GGG | - | chr7_1:79829701-79829720 | None:intergenic | 40.0% | |
| ! | CTCTTTGTTTGTTGCATTGC+AGG | + | chr7_1:79829774-79829793 | Msa1042090:intron | 40.0% |
| ! | GTTTGTTGCATTGCAGGAAT+TGG | + | chr7_1:79829780-79829799 | Msa1042090:intron | 40.0% |
| CTTGCTTTGGCCTCAATTAT+TGG | + | chr7_1:79829817-79829836 | Msa1042090:CDS | 40.0% | |
| !! | GCCTCAATTATTGGCTTTCT+AGG | + | chr7_1:79829826-79829845 | Msa1042090:CDS | 40.0% |
| GTGATACCAAGCATAAGCAT+AGG | - | chr7_1:79830169-79830188 | None:intergenic | 40.0% | |
| CTTATGCTTGGTATCACTGT+TGG | + | chr7_1:79830172-79830191 | Msa1042090:CDS | 40.0% | |
| ! | TCTTTAAGGGAACTGAGATG+TGG | + | chr7_1:79830362-79830381 | Msa1042090:CDS | 40.0% |
| CCTACCAACCAATAAGTAGA+TGG | - | chr7_1:79830785-79830804 | None:intergenic | 40.0% | |
| ! | CCATCTACTTATTGGTTGGT+AGG | + | chr7_1:79830782-79830801 | Msa1042090:intron | 40.0% |
| ! | TGGTTTGCAGAATGATGTCA+AGG | + | chr7_1:79831012-79831031 | Msa1042090:intron | 40.0% |
| TCTCAATTGTCGTTGTGTTG+TGG | + | chr7_1:79831160-79831179 | Msa1042090:intron | 40.0% | |
| CGATATAGATCACGACATCA+TGG | - | chr7_1:79831204-79831223 | None:intergenic | 40.0% | |
| AGAGAGAAAAACATGCATGG+TGG | - | chr7_1:79831267-79831286 | None:intergenic | 40.0% | |
| TCAGTTTCCTATTGCACTAG+TGG | + | chr7_1:79831290-79831309 | Msa1042090:intron | 40.0% | |
| TACAAGAAGAGGATGAGTAC+AGG | + | chr7_1:79831348-79831367 | Msa1042090:CDS | 40.0% | |
| TGTGCACTATGTGGAATCTT+AGG | + | chr7_1:79831429-79831448 | Msa1042090:CDS | 40.0% | |
| CACTATGTGGAATCTTAGGT+GGG | + | chr7_1:79831433-79831452 | Msa1042090:CDS | 40.0% | |
| !! | TTCTGGAGGTGGATTCATTT+TGG | + | chr7_1:79831476-79831495 | Msa1042090:intron | 40.0% |
| !! | TCTGGAGGTGGATTCATTTT+GGG | + | chr7_1:79831477-79831496 | Msa1042090:intron | 40.0% |
| CACCAATCTCAATGAGAAGA+GGG | - | chr7_1:79831503-79831522 | None:intergenic | 40.0% | |
| ACACCAATCTCAATGAGAAG+AGG | - | chr7_1:79831504-79831523 | None:intergenic | 40.0% | |
| GTCTATATGTACTGTACCTG+AGG | - | chr7_1:79831531-79831550 | None:intergenic | 40.0% | |
| ATCCAAATCCGCATGTGAAA+GGG | - | chr7_1:79831558-79831577 | None:intergenic | 40.0% | |
| AATCCAAATCCGCATGTGAA+AGG | - | chr7_1:79831559-79831578 | None:intergenic | 40.0% | |
| GGTGACCATTGAATCAAGAA+TGG | + | chr7_1:79831622-79831641 | Msa1042090:intron | 40.0% | |
| GACGTCCATTCTTGATTCAA+TGG | - | chr7_1:79831630-79831649 | None:intergenic | 40.0% | |
| GGCAATTGGTTAAGATCGAA+CGG | - | chr7_1:79831674-79831693 | None:intergenic | 40.0% | |
| TTAACCAATTGCCACTGATG+TGG | + | chr7_1:79831681-79831700 | Msa1042090:intron | 40.0% | |
| CCAAGTCTAAGAAGGGATTT+CGG | - | chr7_1:79831745-79831764 | None:intergenic | 40.0% | |
| CGAAATCCCTTCTTAGACTT+GGG | + | chr7_1:79831743-79831762 | Msa1042090:intron | 40.0% | |
| TTGAATTCTACCTGCTCAAG+AGG | + | chr7_1:79831851-79831870 | Msa1042090:intron | 40.0% | |
| !! | GAAAGGTACCATAAGGAATG+GGG | - | chr7_1:79831879-79831898 | None:intergenic | 40.0% |
| CATTGTATTCATCCTCTCAG+GGG | + | chr7_1:79832223-79832242 | Msa1042090:intron | 40.0% | |
| ! | CAGGTGTAATTGGCATTGAA+AGG | + | chr7_1:79832376-79832395 | Msa1042090:intron | 40.0% |
| TACCTAGTTGACCAACAAGA+AGG | + | chr7_1:79832566-79832585 | Msa1042090:intron | 40.0% | |
| ATCCTTCTTGTTGGTCAACT+AGG | - | chr7_1:79832571-79832590 | None:intergenic | 40.0% | |
| AGGAAATGGATCCTTCTTGT+TGG | - | chr7_1:79832580-79832599 | None:intergenic | 40.0% | |
| CACACAGATGCTACACTATT+AGG | - | chr7_1:79832696-79832715 | None:intergenic | 40.0% | |
| ! | TCATTGCTGGCTACATTTGA+AGG | + | chr7_1:79832860-79832879 | Msa1042090:intron | 40.0% |
| TACACCAATAGTAGGACCAA+TGG | - | chr7_1:79833037-79833056 | None:intergenic | 40.0% | |
| ! | AAGGTATCATGCTGTGACTA+TGG | + | chr7_1:79833360-79833379 | Msa1042090:intron | 40.0% |
| AACAAAAGACACAGAGGGAG+GGG | - | chr7_1:79829487-79829506 | None:intergenic | 45.0% | |
| CAACAAAAGACACAGAGGGA+GGG | - | chr7_1:79829488-79829507 | None:intergenic | 45.0% | |
| ACAACAAAAGACACAGAGGG+AGG | - | chr7_1:79829489-79829508 | None:intergenic | 45.0% | |
| TTCATCCTGTACCTCGTATC+CGG | + | chr7_1:79829557-79829576 | Msa1042090:CDS | 45.0% | |
| GAGCCATGGAATTGAAGAGA+TGG | - | chr7_1:79829650-79829669 | None:intergenic | 45.0% | |
| !!! | GGGCCAAGTTTTATCGGTTT+TGG | - | chr7_1:79829681-79829700 | None:intergenic | 45.0% |
| GTTACTCACAACACGTTCTC+AGG | + | chr7_1:79829705-79829724 | Msa1042090:intron | 45.0% | |
| !!! | GGCTTTCTAGGATCTGCTTT+TGG | + | chr7_1:79829838-79829857 | Msa1042090:CDS | 45.0% |
| TTGTTGGATGACGCACTCTT+AGG | - | chr7_1:79830102-79830121 | None:intergenic | 45.0% | |
| TGACACGGAATATGATCCGT+TGG | + | chr7_1:79830694-79830713 | Msa1042090:CDS | 45.0% | |
| ATGTCAAGGTCTGCAGTGTA+TGG | + | chr7_1:79831026-79831045 | Msa1042090:CDS | 45.0% | |
| AGGTCTGCAGTGTATGGTAT+TGG | + | chr7_1:79831032-79831051 | Msa1042090:CDS | 45.0% | |
| GGTCTGCAGTGTATGGTATT+GGG | + | chr7_1:79831033-79831052 | Msa1042090:CDS | 45.0% | |
| ! | TTGGGTCCTTTTCTCCTTAC+AGG | + | chr7_1:79831051-79831070 | Msa1042090:CDS | 45.0% |
| GCACTATGTGGAATCTTAGG+TGG | + | chr7_1:79831432-79831451 | Msa1042090:CDS | 45.0% | |
| AGACATACCCCTTTCACATG+CGG | + | chr7_1:79831547-79831566 | Msa1042090:intron | 45.0% | |
| TCCAAATCCGCATGTGAAAG+GGG | - | chr7_1:79831557-79831576 | None:intergenic | 45.0% | |
| TCAAGAATGGACGTCAAGCT+TGG | + | chr7_1:79831635-79831654 | Msa1042090:intron | 45.0% | |
| AAGGGATTTCGGTTGTGTGT+AGG | - | chr7_1:79831734-79831753 | None:intergenic | 45.0% | |
| CCGAAATCCCTTCTTAGACT+TGG | + | chr7_1:79831742-79831761 | Msa1042090:intron | 45.0% | |
| AAGAGGTTCCCCATTCCTTA+TGG | + | chr7_1:79831868-79831887 | Msa1042090:intron | 45.0% | |
| CCAAAACAGACACTGTGAAG+AGG | - | chr7_1:79832142-79832161 | None:intergenic | 45.0% | |
| ! | CCTCTTCACAGTGTCTGTTT+TGG | + | chr7_1:79832139-79832158 | Msa1042090:CDS | 45.0% |
| !!! | TTCACAGTGTCTGTTTTGGC+TGG | + | chr7_1:79832143-79832162 | Msa1042090:CDS | 45.0% |
| !!! | TCTGTTTTGGCTGGCTTTGT+GGG | + | chr7_1:79832152-79832171 | Msa1042090:CDS | 45.0% |
| TAGCAAAAATGACCCCTGAG+AGG | - | chr7_1:79832238-79832257 | None:intergenic | 45.0% | |
| ! | TTTTGCTAGTGCTCTCACCA+TGG | + | chr7_1:79832250-79832269 | Msa1042090:intron | 45.0% |
| TTTGCTAGTGCTCTCACCAT+GGG | + | chr7_1:79832251-79832270 | Msa1042090:intron | 45.0% | |
| !! | TGTGCTGCTTCAATGACTCT+AGG | - | chr7_1:79832635-79832654 | None:intergenic | 45.0% |
| CTATGTGGCCAATTCATTGC+TGG | + | chr7_1:79832847-79832866 | Msa1042090:intron | 45.0% | |
| GTCCTACTATTGGTGTACTG+TGG | + | chr7_1:79833040-79833059 | Msa1042090:intron | 45.0% | |
| GTCCACAGTACACCAATAGT+AGG | - | chr7_1:79833045-79833064 | None:intergenic | 45.0% | |
| TGCTGTGACTATGGCATATG+CGG | + | chr7_1:79833369-79833388 | Msa1042090:CDS | 45.0% | |
| ACAAAAGACACAGAGGGAGG+GGG | - | chr7_1:79829486-79829505 | None:intergenic | 50.0% | |
| AGAAACCGGATACGAGGTAC+AGG | - | chr7_1:79829565-79829584 | None:intergenic | 50.0% | |
| GAGAATCGCAACGGAGAAAC+CGG | - | chr7_1:79829579-79829598 | None:intergenic | 50.0% | |
| AAGAGCGGAGAGAATCGCAA+CGG | - | chr7_1:79829588-79829607 | None:intergenic | 50.0% | |
| TGCAGGAATTGGAGCCTAGT+TGG | + | chr7_1:79829791-79829810 | Msa1042090:intron | 50.0% | |
| ! | GCCTAGTTGGAGACTTGCTT+TGG | + | chr7_1:79829804-79829823 | Msa1042090:CDS | 50.0% |
| GCCAAAGCAAGTCTCCAACT+AGG | - | chr7_1:79829808-79829827 | None:intergenic | 50.0% | |
| !!! | GGATCTGCTTTTGGAACCGT+TGG | + | chr7_1:79829847-79829866 | Msa1042090:CDS | 50.0% |
| !!! | TCTGCTTTTGGAACCGTTGG+TGG | + | chr7_1:79829850-79829869 | Msa1042090:CDS | 50.0% |
| !! | TTTGGAACCGTTGGTGGTGT+TGG | + | chr7_1:79829856-79829875 | Msa1042090:CDS | 50.0% |
| GGACAGTGATGAGCCAGTAA+GGG | - | chr7_1:79830219-79830238 | None:intergenic | 50.0% | |
| AGGACAGTGATGAGCCAGTA+AGG | - | chr7_1:79830220-79830239 | None:intergenic | 50.0% | |
| GAGGATGAGTACAGGAAACC+TGG | + | chr7_1:79831356-79831375 | Msa1042090:CDS | 50.0% | |
| AGAACCAAGTAGCCCTCCAA+CGG | - | chr7_1:79831460-79831479 | None:intergenic | 50.0% | |
| GGCCCTCTTCTCATTGAGAT+TGG | + | chr7_1:79831498-79831517 | Msa1042090:intron | 50.0% | |
| !! | TGAGATTGGTGTCATCCCTC+AGG | + | chr7_1:79831512-79831531 | Msa1042090:intron | 50.0% |
| ACCCCTTTCACATGCGGATT+TGG | + | chr7_1:79831553-79831572 | Msa1042090:intron | 50.0% | |
| AGCTAGGTGCGTGACTGTAT+GGG | - | chr7_1:79831597-79831616 | None:intergenic | 50.0% | |
| TAGCTAGGTGCGTGACTGTA+TGG | - | chr7_1:79831598-79831617 | None:intergenic | 50.0% | |
| AGTCACGCACCTAGCTACAT+CGG | + | chr7_1:79831601-79831620 | Msa1042090:intron | 50.0% | |
| CAATGGTCACCGATGTAGCT+AGG | - | chr7_1:79831613-79831632 | None:intergenic | 50.0% | |
| TCAGCCACATCAGTGGCAAT+TGG | - | chr7_1:79831688-79831707 | None:intergenic | 50.0% | |
| !!! | GTCTGTTTTGGCTGGCTTTG+TGG | + | chr7_1:79832151-79832170 | Msa1042090:CDS | 50.0% |
| !! | AAGGCAGCGTTGATGAATGC+TGG | + | chr7_1:79832539-79832558 | Msa1042090:intron | 50.0% |
| GTGACTATGGCATATGCGGT+TGG | + | chr7_1:79833373-79833392 | Msa1042090:CDS | 50.0% | |
| GGGAGGGGGTAACGTTGTTA+TGG | - | chr7_1:79829472-79829491 | None:intergenic | 55.0% | |
| CAACGGAGAAACCGGATACG+AGG | - | chr7_1:79829571-79829590 | None:intergenic | 55.0% | |
| ACCACCACCAACACCACCAA+CGG | - | chr7_1:79829866-79829885 | None:intergenic | 55.0% | |
| GGAAAGAGCAGCAGCAGACT+TGG | - | chr7_1:79829932-79829951 | None:intergenic | 55.0% | |
| GGAATCTTAGGTGGGACCGT+TGG | + | chr7_1:79831441-79831460 | Msa1042090:CDS | 55.0% | |
| ATCTTAGGTGGGACCGTTGG+AGG | + | chr7_1:79831444-79831463 | Msa1042090:CDS | 55.0% | |
| TCTTAGGTGGGACCGTTGGA+GGG | + | chr7_1:79831445-79831464 | Msa1042090:CDS | 55.0% | |
| GTTGGAGGGCTACTTGGTTC+TGG | + | chr7_1:79831459-79831478 | Msa1042090:CDS | 55.0% | |
| CACACAGTCAGCCACATCAG+TGG | - | chr7_1:79831695-79831714 | None:intergenic | 55.0% | |
| GAATGGGGAACCTCTTGAGC+AGG | - | chr7_1:79831864-79831883 | None:intergenic | 55.0% | |
| !! | GGAACCGTTGGTGGTGTTGG+TGG | + | chr7_1:79829859-79829878 | Msa1042090:CDS | 60.0% |
| !! | ACCGTTGGTGGTGTTGGTGG+TGG | + | chr7_1:79829862-79829881 | Msa1042090:CDS | 60.0% |
| !! | GTTGGTGGTGTTGGTGGTGG+TGG | + | chr7_1:79829865-79829884 | Msa1042090:CDS | 60.0% |
| !! | GGAGGGCTACTTGGTTCTGG+AGG | + | chr7_1:79831462-79831481 | Msa1042090:CDS | 60.0% |
| !! | GGGCTACTTGGTTCTGGAGG+TGG | + | chr7_1:79831465-79831484 | Msa1042090:intron | 60.0% |
| GGGACCGTTGGAGGGCTACT+TGG | + | chr7_1:79831453-79831472 | Msa1042090:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 79829450 | 79833426 | 79829450 | ID=Msa1042090;Name=Msa1042090 |
| chr7_1 | mRNA | 79829450 | 79833426 | 79829450 | ID=Msa1042090-mRNA-1;Parent=Msa1042090;Name=Msa1042090-mRNA-1;_AED=0.27;_eAED=0.31;_QI=86|0.72|0.66|0.91|0.81|0.75|12|0|414 |
| chr7_1 | exon | 79829450 | 79829700 | 79829450 | ID=Msa1042090-mRNA-1:exon:21642;Parent=Msa1042090-mRNA-1 |
| chr7_1 | exon | 79829796 | 79829955 | 79829796 | ID=Msa1042090-mRNA-1:exon:21643;Parent=Msa1042090-mRNA-1 |
| chr7_1 | exon | 79830059 | 79830259 | 79830059 | ID=Msa1042090-mRNA-1:exon:21644;Parent=Msa1042090-mRNA-1 |
| chr7_1 | exon | 79830344 | 79830405 | 79830344 | ID=Msa1042090-mRNA-1:exon:21645;Parent=Msa1042090-mRNA-1 |
| chr7_1 | exon | 79830496 | 79830544 | 79830496 | ID=Msa1042090-mRNA-1:exon:21646;Parent=Msa1042090-mRNA-1 |
| chr7_1 | exon | 79830687 | 79830742 | 79830687 | ID=Msa1042090-mRNA-1:exon:21647;Parent=Msa1042090-mRNA-1 |
| chr7_1 | exon | 79830840 | 79830926 | 79830840 | ID=Msa1042090-mRNA-1:exon:21648;Parent=Msa1042090-mRNA-1 |
| chr7_1 | exon | 79831022 | 79831072 | 79831022 | ID=Msa1042090-mRNA-1:exon:21649;Parent=Msa1042090-mRNA-1 |
| chr7_1 | exon | 79831294 | 79831483 | 79831294 | ID=Msa1042090-mRNA-1:exon:21650;Parent=Msa1042090-mRNA-1 |
| chr7_1 | exon | 79832132 | 79832226 | 79832132 | ID=Msa1042090-mRNA-1:exon:21651;Parent=Msa1042090-mRNA-1 |
| chr7_1 | exon | 79832757 | 79832821 | 79832757 | ID=Msa1042090-mRNA-1:exon:21652;Parent=Msa1042090-mRNA-1 |
| chr7_1 | exon | 79833363 | 79833426 | 79833363 | ID=Msa1042090-mRNA-1:exon:21653;Parent=Msa1042090-mRNA-1 |
| chr7_1 | five_prime_UTR | 79829450 | 79829535 | 79829450 | ID=Msa1042090-mRNA-1:five_prime_utr;Parent=Msa1042090-mRNA-1 |
| chr7_1 | CDS | 79829536 | 79829700 | 79829536 | ID=Msa1042090-mRNA-1:cds;Parent=Msa1042090-mRNA-1 |
| chr7_1 | CDS | 79829796 | 79829955 | 79829796 | ID=Msa1042090-mRNA-1:cds;Parent=Msa1042090-mRNA-1 |
| chr7_1 | CDS | 79830059 | 79830259 | 79830059 | ID=Msa1042090-mRNA-1:cds;Parent=Msa1042090-mRNA-1 |
| chr7_1 | CDS | 79830344 | 79830405 | 79830344 | ID=Msa1042090-mRNA-1:cds;Parent=Msa1042090-mRNA-1 |
| chr7_1 | CDS | 79830496 | 79830544 | 79830496 | ID=Msa1042090-mRNA-1:cds;Parent=Msa1042090-mRNA-1 |
| chr7_1 | CDS | 79830687 | 79830742 | 79830687 | ID=Msa1042090-mRNA-1:cds;Parent=Msa1042090-mRNA-1 |
| chr7_1 | CDS | 79830840 | 79830926 | 79830840 | ID=Msa1042090-mRNA-1:cds;Parent=Msa1042090-mRNA-1 |
| chr7_1 | CDS | 79831022 | 79831072 | 79831022 | ID=Msa1042090-mRNA-1:cds;Parent=Msa1042090-mRNA-1 |
| chr7_1 | CDS | 79831294 | 79831483 | 79831294 | ID=Msa1042090-mRNA-1:cds;Parent=Msa1042090-mRNA-1 |
| chr7_1 | CDS | 79832132 | 79832226 | 79832132 | ID=Msa1042090-mRNA-1:cds;Parent=Msa1042090-mRNA-1 |
| chr7_1 | CDS | 79832757 | 79832821 | 79832757 | ID=Msa1042090-mRNA-1:cds;Parent=Msa1042090-mRNA-1 |
| chr7_1 | CDS | 79833363 | 79833426 | 79833363 | ID=Msa1042090-mRNA-1:cds;Parent=Msa1042090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
