Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1167560 | XP_013450057.1 | 84.416 | 462 | 21 | 3 | 1 | 411 | 1 | 462 | 0.0 | 732 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1167560 | sp|Q8S9J0|TAUE4_ARATH | 61.978 | 455 | 121 | 3 | 5 | 411 | 9 | 459 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1167560 | A0A072UE30 | 84.416 | 462 | 21 | 3 | 1 | 411 | 1 | 462 | 0.0 | 732 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0733570 | Msa1167560 | 0.801001 | 1.106370e-48 | -8.615850e-47 |
| Msa1007980 | Msa1167560 | 0.806753 | 7.059198e-50 | -8.615850e-47 |
| Msa1042090 | Msa1167560 | 0.805673 | 1.191426e-49 | -8.615850e-47 |
| Msa1049440 | Msa1167560 | 0.840207 | 9.993798e-58 | -8.615850e-47 |
| Msa1079900 | Msa1167560 | 0.989933 | 2.669849e-180 | -8.615850e-47 |
| Msa1098070 | Msa1167560 | 0.821497 | 3.912015e-53 | -8.615850e-47 |
| Msa1122480 | Msa1167560 | 0.800320 | 1.522878e-48 | -8.615850e-47 |
| Msa1123340 | Msa1167560 | 0.807279 | 5.462054e-50 | -8.615850e-47 |
| Msa1124840 | Msa1167560 | 0.950608 | 1.158775e-108 | -8.615850e-47 |
| Msa1167560 | Msa1179680 | 0.810875 | 9.273581e-51 | -8.615850e-47 |
| Msa1167560 | Msa1232640 | 0.818233 | 2.181672e-52 | -8.615850e-47 |
| Msa1167560 | Msa1313230 | 0.833676 | 4.650853e-56 | -8.615850e-47 |
| Msa1167560 | Msa1350030 | 0.817253 | 3.629804e-52 | -8.615850e-47 |
| Msa1167560 | Msa1364520 | 0.808741 | 2.667854e-50 | -8.615850e-47 |
| Msa1167560 | Msa1413220 | 0.825491 | 4.554192e-54 | -8.615850e-47 |
| Msa1167560 | Msa1425630 | 0.804216 | 2.402688e-49 | -8.615850e-47 |
| Msa0568490 | Msa1167560 | 0.807597 | 4.677814e-50 | -8.615850e-47 |
| Msa0581440 | Msa1167560 | 0.807699 | 4.450179e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1167560 | MtrunA17_Chr7g0265481 | 84.416 | 462 | 21 | 3 | 1 | 411 | 1 | 462 | 0.0 | 732 |
| Msa1167560 | MtrunA17_Chr1g0179621 | 61.064 | 470 | 117 | 7 | 1 | 410 | 1 | 464 | 0.0 | 515 |
| Msa1167560 | MtrunA17_Chr3g0139541 | 44.144 | 444 | 181 | 10 | 21 | 408 | 34 | 466 | 1.61e-99 | 304 |
| Msa1167560 | MtrunA17_Chr8g0373471 | 42.548 | 416 | 177 | 5 | 45 | 408 | 60 | 465 | 4.11e-98 | 301 |
| Msa1167560 | MtrunA17_Chr5g0403901 | 52.510 | 259 | 115 | 3 | 45 | 301 | 67 | 319 | 2.80e-77 | 247 |
| Msa1167560 | MtrunA17_Chr5g0403901 | 47.945 | 73 | 38 | 0 | 338 | 410 | 398 | 470 | 3.13e-15 | 77.4 |
| Msa1167560 | MtrunA17_Chr8g0380211 | 45.048 | 313 | 150 | 5 | 22 | 323 | 41 | 342 | 3.18e-73 | 236 |
| Msa1167560 | MtrunA17_Chr8g0380211 | 48.611 | 72 | 37 | 0 | 338 | 409 | 405 | 476 | 8.15e-11 | 63.5 |
| Msa1167560 | MtrunA17_Chr1g0157751 | 44.727 | 275 | 142 | 3 | 35 | 301 | 34 | 306 | 4.21e-69 | 225 |
| Msa1167560 | MtrunA17_Chr1g0157751 | 50.704 | 71 | 35 | 0 | 338 | 408 | 385 | 455 | 1.75e-14 | 75.1 |
| Msa1167560 | MtrunA17_Chr8g0380191 | 35.260 | 346 | 141 | 5 | 107 | 409 | 10 | 315 | 5.77e-53 | 179 |
| Msa1167560 | MtrunA17_Chr2g0280401 | 30.081 | 246 | 149 | 5 | 53 | 280 | 55 | 295 | 2.07e-21 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1167560 | AT2G36630.1 | 61.978 | 455 | 121 | 3 | 5 | 411 | 9 | 459 | 0.0 | 516 |
| Msa1167560 | AT2G25737.1 | 45.388 | 412 | 161 | 6 | 51 | 408 | 71 | 472 | 1.97e-96 | 297 |
| Msa1167560 | AT2G25737.2 | 51.049 | 286 | 124 | 3 | 51 | 330 | 71 | 346 | 7.68e-83 | 258 |
| Msa1167560 | AT1G11540.2 | 28.472 | 288 | 184 | 6 | 1 | 279 | 1 | 275 | 1.87e-24 | 105 |
| Msa1167560 | AT4G21250.1 | 30.000 | 290 | 174 | 5 | 29 | 301 | 18 | 295 | 3.39e-24 | 104 |
| Msa1167560 | AT1G11540.1 | 30.000 | 200 | 123 | 4 | 89 | 279 | 1 | 192 | 2.48e-23 | 100 |
| Msa1167560 | AT1G61740.1 | 28.873 | 284 | 176 | 7 | 7 | 279 | 11 | 279 | 1.09e-22 | 100 |
| Msa1167560 | AT4G21260.1 | 25.831 | 391 | 216 | 12 | 27 | 389 | 30 | 374 | 1.62e-20 | 93.2 |
Find 117 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCAAGGTCTTTCTTTA+AGG | 0.115168 | 7_4:-60050434 | Msa1167560:CDS |
| AGTGGTCAATTGCGAATTTC+TGG | 0.142310 | 7_4:+60051268 | None:intergenic |
| CCTATGCTTACTCTTATTAT+TGG | 0.163814 | 7_4:-60050897 | Msa1167560:CDS |
| CATGAATTTATGGGATTCTT+AGG | 0.177443 | 7_4:-60048361 | Msa1167560:CDS |
| CTATTGCACTAGTGGTATTT+TGG | 0.180174 | 7_4:-60049478 | Msa1167560:CDS |
| GATACAGAACCATGAATTTA+TGG | 0.181257 | 7_4:-60048371 | Msa1167560:CDS |
| AGAAAATTGCTTAGAATTCT+TGG | 0.183484 | 7_4:-60048588 | Msa1167560:CDS |
| TCTTAAGTGGAAAAGGATTT+TGG | 0.208098 | 7_4:-60049917 | Msa1167560:CDS |
| GCCTCAATTATTGGCTTTCT+AGG | 0.224694 | 7_4:-60050969 | Msa1167560:CDS |
| CTTGCTTTGGCCTCAATTAT+TGG | 0.227645 | 7_4:-60050978 | Msa1167560:CDS |
| AACAAAAGATGTTCCAATAT+TGG | 0.229019 | 7_4:-60050678 | Msa1167560:CDS |
| CTTACTACTTCAGGTCATTA+AGG | 0.231663 | 7_4:-60049869 | Msa1167560:intron |
| GGCTTTCTAGGATCTGCTTT+TGG | 0.237402 | 7_4:-60050957 | Msa1167560:CDS |
| GGTTTCTTTCTTACTACTTC+AGG | 0.259142 | 7_4:-60049878 | Msa1167560:CDS |
| TGTGCACTCTGTGGAATCTT+AGG | 0.276638 | 7_4:-60049347 | Msa1167560:CDS |
| TTGTTGGATGACGCACTCTT+AGG | 0.313192 | 7_4:+60050696 | None:intergenic |
| GTTATTTATAGGTATGATAA+TGG | 0.318227 | 7_4:-60050747 | Msa1167560:intron |
| CTTCCCTTCTATAAGATTTG+TGG | 0.319559 | 7_4:-60047870 | Msa1167560:three_prime_UTR |
| CCTCTTCACAGTGTCTGTTT+TGG | 0.327724 | 7_4:-60048637 | Msa1167560:CDS |
| CACACAGATGCTACACTATT+AGG | 0.337660 | 7_4:+60048088 | None:intergenic |
| GTTGGAGGGCTACTTGGTTC+TGG | 0.338070 | 7_4:-60049317 | Msa1167560:CDS |
| TCTTCAAGGTCTTTCTTTAA+GGG | 0.338871 | 7_4:-60050433 | Msa1167560:CDS |
| GCCTAGTTGGAGACTTGCTT+TGG | 0.339589 | 7_4:-60050991 | Msa1167560:CDS |
| TATTTATTACTTGAAGGAAA+TGG | 0.343166 | 7_4:+60048190 | None:intergenic |
| GCTAAATCATAATCCAATAT+TGG | 0.345497 | 7_4:+60050665 | None:intergenic |
| TCAACCACAAATCTTATAGA+AGG | 0.349150 | 7_4:+60047866 | None:intergenic |
| CAAAATACCACTAGTGCAAT+AGG | 0.361717 | 7_4:+60049479 | None:intergenic |
| ATCATTGTATTCATCCTCTC+AGG | 0.365275 | 7_4:-60048555 | Msa1167560:CDS |
| CTATGTGGCCAATTCATTGT+TGG | 0.374115 | 7_4:-60047941 | Msa1167560:three_prime_UTR |
| TAGCTTTATTTATTACTTGA+AGG | 0.379140 | 7_4:+60048184 | None:intergenic |
| ATACAGAACCATGAATTTAT+GGG | 0.379494 | 7_4:-60048370 | Msa1167560:CDS |
| GAGGTAGAGGATGAATGTTT+TGG | 0.388535 | 7_4:+60051232 | None:intergenic |
| ATCTTAGGTGGGACCGTTGG+AGG | 0.395223 | 7_4:-60049332 | Msa1167560:CDS |
| CTAAGAATCCCATAAATTCA+TGG | 0.406431 | 7_4:+60048362 | None:intergenic |
| GTTCCAATCTTAAGTGGAAA+AGG | 0.406736 | 7_4:-60049924 | Msa1167560:CDS |
| AAGCTTCACATATACATTCC+AGG | 0.407619 | 7_4:+60049402 | None:intergenic |
| AAATGTAGCCAACAATGAAT+TGG | 0.410687 | 7_4:+60047933 | None:intergenic |
| GAGAATCGCAACGGAGAAAC+CGG | 0.412752 | 7_4:+60051205 | None:intergenic |
| AGGTCTGCAGTGTATGGTAT+TGG | 0.414722 | 7_4:-60049742 | Msa1167560:CDS |
| AAAAGCTTGTATAAATTTCA+AGG | 0.418704 | 7_4:-60048272 | Msa1167560:three_prime_UTR |
| TTGTTAATTGCAGAAAGAAA+TGG | 0.424199 | 7_4:-60050295 | Msa1167560:intron |
| TCATTGTTGGCTACATTTGA+AGG | 0.424803 | 7_4:-60047928 | Msa1167560:three_prime_UTR |
| GGGACCGTTGGAGGGCTACT+TGG | 0.428854 | 7_4:-60049323 | Msa1167560:CDS |
| TTCATCCTCTACCTCGTATC+CGG | 0.430162 | 7_4:-60051224 | Msa1167560:CDS |
| TGCAGGAATTGGAGCCTAGT+TGG | 0.435667 | 7_4:-60051004 | Msa1167560:intron |
| TTATTTATAGGTATGATAAT+GGG | 0.441362 | 7_4:-60050746 | Msa1167560:intron |
| TTTGGATAGGAACTTCTTCA+AGG | 0.444034 | 7_4:-60050447 | Msa1167560:intron |
| ACCGTTGGTGGTGTTGGTGG+TGG | 0.448909 | 7_4:-60050933 | Msa1167560:CDS |
| GGTCTGCAGTGTATGGTATT+GGG | 0.449354 | 7_4:-60049741 | Msa1167560:CDS |
| GGGAGGGAGTAACGTTGTTA+TGG | 0.452115 | 7_4:+60051312 | None:intergenic |
| GTTGGTGGTGTTGGTGGTGG+TGG | 0.454327 | 7_4:-60050930 | Msa1167560:CDS |
| ATCCTTCTTGTTGGTCAACT+AGG | 0.460286 | 7_4:+60048213 | None:intergenic |
| TACATACCTGTAAGGAGAAA+AGG | 0.464417 | 7_4:+60049717 | None:intergenic |
| TCTCCATCTCTTCAATTCCA+TGG | 0.464521 | 7_4:-60051137 | Msa1167560:CDS |
| TTTCAACCTATGCTTATGCT+TGG | 0.465503 | 7_4:-60050635 | Msa1167560:CDS |
| TATGTGAAGCTTCAATTGAA+TGG | 0.468378 | 7_4:-60049391 | Msa1167560:CDS |
| TCAGTTTCCTATTGCACTAG+TGG | 0.468918 | 7_4:-60049486 | Msa1167560:intron |
| AGGACAGTGATGAGCCAGTA+AGG | 0.475643 | 7_4:+60050578 | None:intergenic |
| TGTGGTTGACTGTTAGCTAC+TGG | 0.483360 | 7_4:-60047852 | Msa1167560:three_prime_UTR |
| TTTGGAACCGTTGGTGGTGT+TGG | 0.485288 | 7_4:-60050939 | Msa1167560:CDS |
| GGAAAGAGCAGCAGCAGACT+TGG | 0.486427 | 7_4:+60050866 | None:intergenic |
| CTTATGCTTGGTATCACTGT+TGG | 0.488422 | 7_4:-60050623 | Msa1167560:CDS |
| CAGGTGTAATTGGCATTGAA+AGG | 0.499649 | 7_4:-60048405 | Msa1167560:CDS |
| TTCTCTTCTCTAGGTACCAA+CGG | 0.500513 | 7_4:+60050068 | None:intergenic |
| GGAACCGTTGGTGGTGTTGG+TGG | 0.502109 | 7_4:-60050936 | Msa1167560:CDS |
| TTTGCTAGTGCTCTCACCAT+GGG | 0.514375 | 7_4:-60048525 | Msa1167560:intron |
| AGGAAATGGATCCTTCTTGT+TGG | 0.515190 | 7_4:+60048204 | None:intergenic |
| TTTGGTGTTAATGATTGTGT+GGG | 0.524681 | 7_4:-60049899 | Msa1167560:CDS |
| GCTTGTATAAATTTCAAGGT+AGG | 0.530853 | 7_4:-60048268 | Msa1167560:three_prime_UTR |
| GCTCCAAAACCGATAAAACT+TGG | 0.532182 | 7_4:-60051115 | Msa1167560:CDS |
| GAAAGAAGAGACTCTTCTAA+AGG | 0.532361 | 7_4:-60050398 | Msa1167560:intron |
| CTATGAAAAGAATAATGATA+AGG | 0.533759 | 7_4:+60050558 | None:intergenic |
| GCACTCTGTGGAATCTTAGG+TGG | 0.534981 | 7_4:-60049344 | Msa1167560:CDS |
| TCAATGTTTATGTTTCTATG+TGG | 0.537008 | 7_4:-60047956 | Msa1167560:three_prime_UTR |
| CACAAATCTTATAGAAGGGA+AGG | 0.537098 | 7_4:+60047871 | None:intergenic |
| TAGAGAAGAGAAAACTCCTA+TGG | 0.538536 | 7_4:-60050057 | Msa1167560:intron |
| GAGGATGAGTACAGGAAACC+TGG | 0.540526 | 7_4:-60049420 | Msa1167560:CDS |
| CACTCTGTGGAATCTTAGGT+GGG | 0.542197 | 7_4:-60049343 | Msa1167560:CDS |
| TACAAGAAGAGGATGAGTAC+AGG | 0.547246 | 7_4:-60049428 | Msa1167560:CDS |
| ACCACCACCAACACCACCAA+CGG | 0.547510 | 7_4:+60050932 | None:intergenic |
| TATTATCATACATACCTGTA+AGG | 0.550069 | 7_4:+60049709 | None:intergenic |
| GTCATCATATCATAAATCAC+TGG | 0.551279 | 7_4:+60048326 | None:intergenic |
| AAGGCAGCGTTGATGAATGC+TGG | 0.554316 | 7_4:-60048242 | Msa1167560:three_prime_UTR |
| ATGTCAAGGTCTGCAGTGTA+TGG | 0.557509 | 7_4:-60049748 | Msa1167560:CDS |
| GAGCCATGGAATTGAAGAGA+TGG | 0.559296 | 7_4:+60051134 | None:intergenic |
| GAGGATGAATACAATGATTG+AGG | 0.567259 | 7_4:+60048560 | None:intergenic |
| TGTGCTGCTTCAATGACTCT+AGG | 0.567982 | 7_4:+60048149 | None:intergenic |
| TCTTAGGTGGGACCGTTGGA+GGG | 0.569227 | 7_4:-60049331 | Msa1167560:CDS |
| TGGTTTGCAGAATGATGTCA+AGG | 0.570401 | 7_4:-60049762 | Msa1167560:intron |
| TCCTAGAAAGCCAATAATTG+AGG | 0.572327 | 7_4:+60050968 | None:intergenic |
| TCATTGTATTCATCCTCTCA+GGG | 0.573524 | 7_4:-60048554 | Msa1167560:CDS |
| CAACAAAAGACACAGAGGGA+GGG | 0.589945 | 7_4:+60051296 | None:intergenic |
| CAACCACAAATCTTATAGAA+GGG | 0.590107 | 7_4:+60047867 | None:intergenic |
| TACCTAGTTGACCAACAAGA+AGG | 0.590340 | 7_4:-60048215 | Msa1167560:three_prime_UTR |
| TCTTTAAGGGAACTGAGATG+TGG | 0.592420 | 7_4:-60050420 | Msa1167560:CDS |
| GGAGGGCTACTTGGTTCTGG+AGG | 0.593688 | 7_4:-60049314 | Msa1167560:intron |
| TGACACGGAATATGATCCGT+TGG | 0.595281 | 7_4:-60050084 | Msa1167560:CDS |
| ACAACAAAAGACACAGAGGG+AGG | 0.600323 | 7_4:+60051295 | None:intergenic |
| AGAAACCGGATACGAGGTAG+AGG | 0.604035 | 7_4:+60051219 | None:intergenic |
| TGAAGCAATGAAGTTGTACA+AGG | 0.607163 | 7_4:-60049453 | Msa1167560:CDS |
| TGTACAAGGATTACAAGAAG+AGG | 0.614235 | 7_4:-60049439 | Msa1167560:CDS |
| CCAAAACAGACACTGTGAAG+AGG | 0.614270 | 7_4:+60048637 | None:intergenic |
| GCCAAAGCAAGTCTCCAACT+AGG | 0.614402 | 7_4:+60050990 | None:intergenic |
| CAACGGAGAAACCGGATACG+AGG | 0.616746 | 7_4:+60051213 | None:intergenic |
| GGAATCTTAGGTGGGACCGT+TGG | 0.618283 | 7_4:-60049335 | Msa1167560:CDS |
| TTTGGTGGAAAAGGACATAG+TGG | 0.622803 | 7_4:+60051250 | None:intergenic |
| GGACAGTGATGAGCCAGTAA+GGG | 0.622892 | 7_4:+60050579 | None:intergenic |
| AGAACCAAGTAGCCCTCCAA+CGG | 0.623795 | 7_4:+60049319 | None:intergenic |
| GTGATACCAAGCATAAGCAT+AGG | 0.629811 | 7_4:+60050629 | None:intergenic |
| CCAATAATAAGAGTAAGCAT+AGG | 0.636816 | 7_4:+60050897 | None:intergenic |
| TAAATTTCAAGGTAGGACAA+AGG | 0.643520 | 7_4:-60048261 | Msa1167560:three_prime_UTR |
| ATTGCAGAAAGAAATGGCAA+AGG | 0.644245 | 7_4:-60050289 | Msa1167560:intron |
| AACAACAACAAAAGACACAG+AGG | 0.648660 | 7_4:+60051291 | None:intergenic |
| ACAACAACAAAAGACACAGA+GGG | 0.648796 | 7_4:+60051292 | None:intergenic |
| ATATGCAGTTCTAATTGACA+CGG | 0.678566 | 7_4:-60050099 | Msa1167560:intron |
| AAGAGCGGAGAGAATCGCAA+CGG | 0.698430 | 7_4:+60051196 | None:intergenic |
| CATTGTATTCATCCTCTCAG+GGG | 0.714050 | 7_4:-60048553 | Msa1167560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATCTATATATATGATTT+TGG | - | chr7_4:60049390-60049409 | Msa1167560:CDS | 10.0% |
| !! | TTATTTATAGGTATGATAAT+GGG | - | chr7_4:60048426-60048445 | Msa1167560:intron | 15.0% |
| !! | AAAAAGAAAAGACATATATT+CGG | + | chr7_4:60048708-60048727 | None:intergenic | 15.0% |
| !!! | ATCTATTTTCAAATTTATGT+TGG | - | chr7_4:60048952-60048971 | Msa1167560:intron | 15.0% |
| !! | AAATGAAAAATATACAAATC+TGG | - | chr7_4:60049012-60049031 | Msa1167560:intron | 15.0% |
| !!! | CAAAGAGTTAATGTTTTTAA+CGG | + | chr7_4:60048143-60048162 | None:intergenic | 20.0% |
| !! | AAAACGGAATTAATTACATT+TGG | + | chr7_4:60048330-60048349 | None:intergenic | 20.0% |
| !!! | AATTAATTCCGTTTTACATA+AGG | - | chr7_4:60048335-60048354 | Msa1167560:exon | 20.0% |
| !! | AAATGAAACCTTATGTAAAA+CGG | + | chr7_4:60048346-60048365 | None:intergenic | 20.0% |
| !!! | TTGTTGACTATGTTATTTAT+AGG | - | chr7_4:60048414-60048433 | Msa1167560:intron | 20.0% |
| !! | GTTATTTATAGGTATGATAA+TGG | - | chr7_4:60048425-60048444 | Msa1167560:intron | 20.0% |
| !! | CTATGAAAAGAATAATGATA+AGG | + | chr7_4:60048617-60048636 | None:intergenic | 20.0% |
| !!! | CTTATCATTATTCTTTTCAT+AGG | - | chr7_4:60048615-60048634 | Msa1167560:CDS | 20.0% |
| !!! | GAATATATGTCTTTTCTTTT+TGG | - | chr7_4:60048707-60048726 | Msa1167560:intron | 20.0% |
| !! | AAATTTATGTTGGATTCATT+AGG | - | chr7_4:60048962-60048981 | Msa1167560:intron | 20.0% |
| !!! | GAAGTTTTAATTAATACCAT+AGG | + | chr7_4:60049134-60049153 | None:intergenic | 20.0% |
| !! | TAAAACTTTCATCTACTTAT+TGG | - | chr7_4:60049172-60049191 | Msa1167560:intron | 20.0% |
| !! | AATTAATAGAAATAGTAGAG+AGG | + | chr7_4:60049335-60049354 | None:intergenic | 20.0% |
| !! | CAAATTGTACTTTATGAAAT+TGG | + | chr7_4:60049492-60049511 | None:intergenic | 20.0% |
| !! | ATGTAATGATGAAGTTAATT+TGG | - | chr7_4:60049526-60049545 | Msa1167560:intron | 20.0% |
| !! | TGTAATGATGAAGTTAATTT+GGG | - | chr7_4:60049527-60049546 | Msa1167560:intron | 20.0% |
| !!! | AGCTAGTATTCTTTTAAAAA+AGG | + | chr7_4:60049638-60049657 | None:intergenic | 20.0% |
| !! | AAAAGCTTGTATAAATTTCA+AGG | - | chr7_4:60050900-60050919 | Msa1167560:CDS | 20.0% |
| !! | TATTTATTACTTGAAGGAAA+TGG | + | chr7_4:60050985-60051004 | None:intergenic | 20.0% |
| !!! | TAGCTTTATTTATTACTTGA+AGG | + | chr7_4:60050991-60051010 | None:intergenic | 20.0% |
| !!! | TTTTCTGTATTCAATAAACA+AGG | - | chr7_4:60051270-60051289 | Msa1167560:five_prime_UTR | 20.0% |
| !! | AATATTGGAACATCTTTTGT+TGG | + | chr7_4:60048495-60048514 | None:intergenic | 25.0% |
| ! | AACAAAAGATGTTCCAATAT+TGG | - | chr7_4:60048494-60048513 | Msa1167560:intron | 25.0% |
| ! | GCTAAATCATAATCCAATAT+TGG | + | chr7_4:60048510-60048529 | None:intergenic | 25.0% |
| !! | TATGTCTTTTCTTTTTGGAT+AGG | - | chr7_4:60048712-60048731 | Msa1167560:intron | 25.0% |
| ! | TTGTTAATTGCAGAAAGAAA+TGG | - | chr7_4:60048877-60048896 | Msa1167560:intron | 25.0% |
| ! | TATACAAATCTGGATTCATA+TGG | - | chr7_4:60049022-60049041 | Msa1167560:intron | 25.0% |
| !! | TATTTTGTTCCAATCTTAAG+TGG | - | chr7_4:60049242-60049261 | Msa1167560:intron | 25.0% |
| ! | TATTATCATACATACCTGTA+AGG | + | chr7_4:60049466-60049485 | None:intergenic | 25.0% |
| !!! | AAAGTTTAAGAGTTGATGAA+AGG | + | chr7_4:60050292-60050311 | None:intergenic | 25.0% |
| ! | GAGAACTGAGAATTAATTAA+AGG | + | chr7_4:60050338-60050357 | None:intergenic | 25.0% |
| ! | AGGACTGTATAGAAATTAAT+AGG | - | chr7_4:60050385-60050404 | Msa1167560:intron | 25.0% |
| ! | AGAAAATTGCTTAGAATTCT+TGG | - | chr7_4:60050584-60050603 | Msa1167560:CDS | 25.0% |
| ! | ATACAGAACCATGAATTTAT+GGG | - | chr7_4:60050802-60050821 | Msa1167560:intron | 25.0% |
| !! | TCAATGTTTATGTTTCTATG+TGG | - | chr7_4:60051216-60051235 | Msa1167560:CDS | 25.0% |
| ! | AGATGAATTTTCGTGGTAAT+TGG | + | chr7_4:60048018-60048037 | None:intergenic | 30.0% |
| ! | ATTAACTCTTTGTTTGTTGC+AGG | - | chr7_4:60048151-60048170 | Msa1167560:three_prime_UTR | 30.0% |
| CCAATAATAAGAGTAAGCAT+AGG | + | chr7_4:60048278-60048297 | None:intergenic | 30.0% | |
| CCTATGCTTACTCTTATTAT+TGG | - | chr7_4:60048275-60048294 | Msa1167560:three_prime_UTR | 30.0% | |
| TTCTTCAAGGTCTTTCTTTA+AGG | - | chr7_4:60048738-60048757 | Msa1167560:intron | 30.0% | |
| TCTTCAAGGTCTTTCTTTAA+GGG | - | chr7_4:60048739-60048758 | Msa1167560:intron | 30.0% | |
| ! | ACAACTTTTGTTAATTCTCG+TGG | - | chr7_4:60048911-60048930 | Msa1167560:intron | 30.0% |
| ! | CAACTTTTGTTAATTCTCGT+GGG | - | chr7_4:60048912-60048931 | Msa1167560:intron | 30.0% |
| ! | AACTTTTGTTAATTCTCGTG+GGG | - | chr7_4:60048913-60048932 | Msa1167560:intron | 30.0% |
| CAATTAGAACTGCATATTTC+AGG | + | chr7_4:60049070-60049089 | None:intergenic | 30.0% | |
| ! | ATATGCAGTTCTAATTGACA+CGG | - | chr7_4:60049073-60049092 | Msa1167560:intron | 30.0% |
| ACTTTCATCTACTTATTGGT+TGG | - | chr7_4:60049176-60049195 | Msa1167560:intron | 30.0% | |
| ! | AATCCTTTTCCACTTAAGAT+TGG | + | chr7_4:60049254-60049273 | None:intergenic | 30.0% |
| ! | TCTTAAGTGGAAAAGGATTT+TGG | - | chr7_4:60049255-60049274 | Msa1167560:intron | 30.0% |
| !!! | TTTTGGTGTTAATGATTGTG+TGG | - | chr7_4:60049272-60049291 | Msa1167560:intron | 30.0% |
| !! | TTTGGTGTTAATGATTGTGT+GGG | - | chr7_4:60049273-60049292 | Msa1167560:intron | 30.0% |
| TATGTGAAGCTTCAATTGAA+TGG | - | chr7_4:60049781-60049800 | Msa1167560:intron | 30.0% | |
| AAATTGCCTAAGTCTAAGAA+GGG | + | chr7_4:60050148-60050167 | None:intergenic | 30.0% | |
| TAAATTGCCTAAGTCTAAGA+AGG | + | chr7_4:60050149-60050168 | None:intergenic | 30.0% | |
| ! | CTTAGGCAATTTAACTTACA+AGG | - | chr7_4:60050156-60050175 | Msa1167560:intron | 30.0% |
| CTGAGAATTAATTAAAGGCA+TGG | + | chr7_4:60050333-60050352 | None:intergenic | 30.0% | |
| !! | ACTTTTTCTCTTACAAGACA+TGG | + | chr7_4:60050362-60050381 | None:intergenic | 30.0% |
| !!! | AATGCAACACTTTTTCTTTC+AGG | - | chr7_4:60050748-60050767 | Msa1167560:intron | 30.0% |
| !! | CTTTTTCTTTCAGGTGTAAT+TGG | - | chr7_4:60050757-60050776 | Msa1167560:intron | 30.0% |
| GATACAGAACCATGAATTTA+TGG | - | chr7_4:60050801-60050820 | Msa1167560:intron | 30.0% | |
| CTAAGAATCCCATAAATTCA+TGG | + | chr7_4:60050813-60050832 | None:intergenic | 30.0% | |
| CATGAATTTATGGGATTCTT+AGG | - | chr7_4:60050811-60050830 | Msa1167560:intron | 30.0% | |
| GTCATCATATCATAAATCAC+TGG | + | chr7_4:60050849-60050868 | None:intergenic | 30.0% | |
| GCTTGTATAAATTTCAAGGT+AGG | - | chr7_4:60050904-60050923 | Msa1167560:CDS | 30.0% | |
| TAAATTTCAAGGTAGGACAA+AGG | - | chr7_4:60050911-60050930 | Msa1167560:CDS | 30.0% | |
| AAATGTAGCCAACAATGAAT+TGG | + | chr7_4:60051242-60051261 | None:intergenic | 30.0% | |
| CAACCACAAATCTTATAGAA+GGG | + | chr7_4:60051308-60051327 | None:intergenic | 30.0% | |
| TCAACCACAAATCTTATAGA+AGG | + | chr7_4:60051309-60051328 | None:intergenic | 30.0% | |
| ACAACAACAAAAGACACAGA+GGG | + | chr7_4:60047883-60047902 | None:intergenic | 35.0% | |
| AACAACAACAAAAGACACAG+AGG | + | chr7_4:60047884-60047903 | None:intergenic | 35.0% | |
| !!! | GATGAATGTTTTGGTGGAAA+AGG | + | chr7_4:60047934-60047953 | None:intergenic | 35.0% |
| ! | ATTTTGTGTGAGGTAAAGAG+CGG | + | chr7_4:60047994-60048013 | None:intergenic | 35.0% |
| ! | GGTAATTGGTATTTTGTGTG+AGG | + | chr7_4:60048004-60048023 | None:intergenic | 35.0% |
| AACGTGTTGTGAGTAACATA+CGG | + | chr7_4:60048084-60048103 | None:intergenic | 35.0% | |
| ! | TCTTTGTTTGTTGCAGGAAT+TGG | - | chr7_4:60048157-60048176 | Msa1167560:three_prime_UTR | 35.0% |
| TCCTAGAAAGCCAATAATTG+AGG | + | chr7_4:60048207-60048226 | None:intergenic | 35.0% | |
| CAATGCTTGATTAGAAACAG+AGG | - | chr7_4:60048366-60048385 | Msa1167560:CDS | 35.0% | |
| TTTCAACCTATGCTTATGCT+TGG | - | chr7_4:60048537-60048556 | Msa1167560:CDS | 35.0% | |
| !!! | TTAGTGTTGTTTTCCCTTAC+TGG | - | chr7_4:60048580-60048599 | Msa1167560:CDS | 35.0% |
| TTTGGATAGGAACTTCTTCA+AGG | - | chr7_4:60048725-60048744 | Msa1167560:intron | 35.0% | |
| GAAAGAAGAGACTCTTCTAA+AGG | - | chr7_4:60048774-60048793 | Msa1167560:intron | 35.0% | |
| ATTGCAGAAAGAAATGGCAA+AGG | - | chr7_4:60048883-60048902 | Msa1167560:intron | 35.0% | |
| ! | ATAGGAGTTTTCTCTTCTCT+AGG | + | chr7_4:60049116-60049135 | None:intergenic | 35.0% |
| TAGAGAAGAGAAAACTCCTA+TGG | - | chr7_4:60049115-60049134 | Msa1167560:intron | 35.0% | |
| ! | TCATCTACTTATTGGTTGGT+AGG | - | chr7_4:60049180-60049199 | Msa1167560:intron | 35.0% |
| GTTCCAATCTTAAGTGGAAA+AGG | - | chr7_4:60049248-60049267 | Msa1167560:intron | 35.0% | |
| GGTTTCTTTCTTACTACTTC+AGG | - | chr7_4:60049294-60049313 | Msa1167560:intron | 35.0% | |
| CTTACTACTTCAGGTCATTA+AGG | - | chr7_4:60049303-60049322 | Msa1167560:intron | 35.0% | |
| TACATACCTGTAAGGAGAAA+AGG | + | chr7_4:60049458-60049477 | None:intergenic | 35.0% | |
| CAAAATACCACTAGTGCAAT+AGG | + | chr7_4:60049696-60049715 | None:intergenic | 35.0% | |
| ! | CTATTGCACTAGTGGTATTT+TGG | - | chr7_4:60049694-60049713 | Msa1167560:intron | 35.0% |
| TGAAGCAATGAAGTTGTACA+AGG | - | chr7_4:60049719-60049738 | Msa1167560:intron | 35.0% | |
| TGTACAAGGATTACAAGAAG+AGG | - | chr7_4:60049733-60049752 | Msa1167560:CDS | 35.0% | |
| AAGCTTCACATATACATTCC+AGG | + | chr7_4:60049773-60049792 | None:intergenic | 35.0% | |
| TCTATATGTACTGTACCTGA+GGG | + | chr7_4:60049926-60049945 | None:intergenic | 35.0% | |
| ! | GTCAAGCTTGGTATTTTATC+TGG | - | chr7_4:60050043-60050062 | Msa1167560:intron | 35.0% |
| CTAAGTCTAAGAAGGGATTT+CGG | + | chr7_4:60050141-60050160 | None:intergenic | 35.0% | |
| !!! | CTTACAAGGATTTTGATTGC+AGG | - | chr7_4:60050170-60050189 | Msa1167560:intron | 35.0% |
| ! | GTTTTCATCATCATTGTCTG+TGG | - | chr7_4:60050224-60050243 | Msa1167560:intron | 35.0% |
| !! | TGAAAGGTACCATAAGGAAT+GGG | + | chr7_4:60050276-60050295 | None:intergenic | 35.0% |
| !! | ATGAAAGGTACCATAAGGAA+TGG | + | chr7_4:60050277-60050296 | None:intergenic | 35.0% |
| !! | AGTTGATGAAAGGTACCATA+AGG | + | chr7_4:60050282-60050301 | None:intergenic | 35.0% |
| CTTGTAAGAGAAAAAGTGAG+AGG | - | chr7_4:60050365-60050384 | Msa1167560:intron | 35.0% | |
| GAGGATGAATACAATGATTG+AGG | + | chr7_4:60050615-60050634 | None:intergenic | 35.0% | |
| ATCATTGTATTCATCCTCTC+AGG | - | chr7_4:60050617-60050636 | Msa1167560:CDS | 35.0% | |
| TCATTGTATTCATCCTCTCA+GGG | - | chr7_4:60050618-60050637 | Msa1167560:CDS | 35.0% | |
| ! | GAATCTGATTGATTTACCCA+TGG | + | chr7_4:60050666-60050685 | None:intergenic | 35.0% |
| ! | GACCAAAAAAGTGCACATTA+TGG | - | chr7_4:60050866-60050885 | Msa1167560:CDS | 35.0% |
| !!! | CTCCATAATGTGCACTTTTT+TGG | + | chr7_4:60050871-60050890 | None:intergenic | 35.0% |
| ! | TCATTGTTGGCTACATTTGA+AGG | - | chr7_4:60051244-60051263 | Msa1167560:CDS | 35.0% |
| CACAAATCTTATAGAAGGGA+AGG | + | chr7_4:60051304-60051323 | None:intergenic | 35.0% | |
| CTTCCCTTCTATAAGATTTG+TGG | - | chr7_4:60051302-60051321 | Msa1167560:five_prime_UTR | 35.0% | |
| AGTGGTCAATTGCGAATTTC+TGG | + | chr7_4:60047907-60047926 | None:intergenic | 40.0% | |
| TTTGGTGGAAAAGGACATAG+TGG | + | chr7_4:60047925-60047944 | None:intergenic | 40.0% | |
| !! | GTAGAGGATGAATGTTTTGG+TGG | + | chr7_4:60047940-60047959 | None:intergenic | 40.0% |
| ! | GAGGTAGAGGATGAATGTTT+TGG | + | chr7_4:60047943-60047962 | None:intergenic | 40.0% |
| ! | GAGATGGAGATGAATTTTCG+TGG | + | chr7_4:60048025-60048044 | None:intergenic | 40.0% |
| TCTCCATCTCTTCAATTCCA+TGG | - | chr7_4:60048035-60048054 | Msa1167560:three_prime_UTR | 40.0% | |
| !!! | TTTTATCGGTTTTGGAGCCA+TGG | + | chr7_4:60048055-60048074 | None:intergenic | 40.0% |
| GCTCCAAAACCGATAAAACT+TGG | - | chr7_4:60048057-60048076 | Msa1167560:three_prime_UTR | 40.0% | |
| !! | ACATACGGGCCAAGTTTTAT+CGG | + | chr7_4:60048069-60048088 | None:intergenic | 40.0% |
| ACGTGTTGTGAGTAACATAC+GGG | + | chr7_4:60048083-60048102 | None:intergenic | 40.0% | |
| CTTGCTTTGGCCTCAATTAT+TGG | - | chr7_4:60048194-60048213 | Msa1167560:three_prime_UTR | 40.0% | |
| !! | GCCTCAATTATTGGCTTTCT+AGG | - | chr7_4:60048203-60048222 | Msa1167560:three_prime_UTR | 40.0% |
| GTGATACCAAGCATAAGCAT+AGG | + | chr7_4:60048546-60048565 | None:intergenic | 40.0% | |
| CTTATGCTTGGTATCACTGT+TGG | - | chr7_4:60048549-60048568 | Msa1167560:CDS | 40.0% | |
| ! | TCTTTAAGGGAACTGAGATG+TGG | - | chr7_4:60048752-60048771 | Msa1167560:intron | 40.0% |
| TTCTCTTCTCTAGGTACCAA+CGG | + | chr7_4:60049107-60049126 | None:intergenic | 40.0% | |
| ! | TGGTTTGCAGAATGATGTCA+AGG | - | chr7_4:60049410-60049429 | Msa1167560:CDS | 40.0% |
| CGATATAGATCACGACATCA+TGG | + | chr7_4:60049603-60049622 | None:intergenic | 40.0% | |
| TCAGTTTCCTATTGCACTAG+TGG | - | chr7_4:60049686-60049705 | Msa1167560:intron | 40.0% | |
| TACAAGAAGAGGATGAGTAC+AGG | - | chr7_4:60049744-60049763 | Msa1167560:CDS | 40.0% | |
| ! | ATTGTGTTTTGTGCACTCTG+TGG | - | chr7_4:60049816-60049835 | Msa1167560:intron | 40.0% |
| !! | TTCTGGAGGTGGATTCATTT+TGG | - | chr7_4:60049872-60049891 | Msa1167560:CDS | 40.0% |
| !! | TCTGGAGGTGGATTCATTTT+GGG | - | chr7_4:60049873-60049892 | Msa1167560:CDS | 40.0% |
| CACCAATCTCAATGAGAAGA+GGG | + | chr7_4:60049899-60049918 | None:intergenic | 40.0% | |
| ACACCAATCTCAATGAGAAG+AGG | + | chr7_4:60049900-60049919 | None:intergenic | 40.0% | |
| GTCTATATGTACTGTACCTG+AGG | + | chr7_4:60049927-60049946 | None:intergenic | 40.0% | |
| ATCCAAATCCGCATGTGAAA+GGG | + | chr7_4:60049954-60049973 | None:intergenic | 40.0% | |
| AATCCAAATCCGCATGTGAA+AGG | + | chr7_4:60049955-60049974 | None:intergenic | 40.0% | |
| GGTGACCATTGAATCAAGAA+TGG | - | chr7_4:60050018-60050037 | Msa1167560:intron | 40.0% | |
| GACGTCCATTCTTGATTCAA+TGG | + | chr7_4:60050026-60050045 | None:intergenic | 40.0% | |
| GGCAATTGGTTAAGATCGAA+CGG | + | chr7_4:60050070-60050089 | None:intergenic | 40.0% | |
| TTAACCAATTGCCACTGATG+TGG | - | chr7_4:60050077-60050096 | Msa1167560:CDS | 40.0% | |
| CGAAATCCCTTCTTAGACTT+AGG | - | chr7_4:60050139-60050158 | Msa1167560:intron | 40.0% | |
| TTGAATTCTACCTGCTCAAG+AGG | - | chr7_4:60050247-60050266 | Msa1167560:intron | 40.0% | |
| !! | GAAAGGTACCATAAGGAATG+GGG | + | chr7_4:60050275-60050294 | None:intergenic | 40.0% |
| CATTGTATTCATCCTCTCAG+GGG | - | chr7_4:60050619-60050638 | Msa1167560:CDS | 40.0% | |
| ! | CAGGTGTAATTGGCATTGAA+AGG | - | chr7_4:60050767-60050786 | Msa1167560:intron | 40.0% |
| TACCTAGTTGACCAACAAGA+AGG | - | chr7_4:60050957-60050976 | Msa1167560:CDS | 40.0% | |
| ATCCTTCTTGTTGGTCAACT+AGG | + | chr7_4:60050962-60050981 | None:intergenic | 40.0% | |
| AGGAAATGGATCCTTCTTGT+TGG | + | chr7_4:60050971-60050990 | None:intergenic | 40.0% | |
| CACACAGATGCTACACTATT+AGG | + | chr7_4:60051087-60051106 | None:intergenic | 40.0% | |
| CTATGTGGCCAATTCATTGT+TGG | - | chr7_4:60051231-60051250 | Msa1167560:CDS | 40.0% | |
| CAACAAAAGACACAGAGGGA+GGG | + | chr7_4:60047879-60047898 | None:intergenic | 45.0% | |
| ACAACAAAAGACACAGAGGG+AGG | + | chr7_4:60047880-60047899 | None:intergenic | 45.0% | |
| TTCATCCTCTACCTCGTATC+CGG | - | chr7_4:60047948-60047967 | Msa1167560:three_prime_UTR | 45.0% | |
| GAGCCATGGAATTGAAGAGA+TGG | + | chr7_4:60048041-60048060 | None:intergenic | 45.0% | |
| !!! | GGGCCAAGTTTTATCGGTTT+TGG | + | chr7_4:60048063-60048082 | None:intergenic | 45.0% |
| GTTACTCACAACACGTTCTC+AGG | - | chr7_4:60048087-60048106 | Msa1167560:three_prime_UTR | 45.0% | |
| !!! | GGCTTTCTAGGATCTGCTTT+TGG | - | chr7_4:60048215-60048234 | Msa1167560:three_prime_UTR | 45.0% |
| TTGTTGGATGACGCACTCTT+AGG | + | chr7_4:60048479-60048498 | None:intergenic | 45.0% | |
| TGACACGGAATATGATCCGT+TGG | - | chr7_4:60049088-60049107 | Msa1167560:intron | 45.0% | |
| ATGTCAAGGTCTGCAGTGTA+TGG | - | chr7_4:60049424-60049443 | Msa1167560:CDS | 45.0% | |
| AGGTCTGCAGTGTATGGTAT+TGG | - | chr7_4:60049430-60049449 | Msa1167560:CDS | 45.0% | |
| GGTCTGCAGTGTATGGTATT+GGG | - | chr7_4:60049431-60049450 | Msa1167560:CDS | 45.0% | |
| ! | TTGGGTCCTTTTCTCCTTAC+AGG | - | chr7_4:60049449-60049468 | Msa1167560:CDS | 45.0% |
| CCACAACACAACGACAATTG+AGG | + | chr7_4:60049562-60049581 | None:intergenic | 45.0% | |
| CCTCAATTGTCGTTGTGTTG+TGG | - | chr7_4:60049559-60049578 | Msa1167560:intron | 45.0% | |
| TGTGCACTCTGTGGAATCTT+AGG | - | chr7_4:60049825-60049844 | Msa1167560:intron | 45.0% | |
| CACTCTGTGGAATCTTAGGT+GGG | - | chr7_4:60049829-60049848 | Msa1167560:intron | 45.0% | |
| AGACATACCCCTTTCACATG+CGG | - | chr7_4:60049943-60049962 | Msa1167560:intron | 45.0% | |
| TCCAAATCCGCATGTGAAAG+GGG | + | chr7_4:60049953-60049972 | None:intergenic | 45.0% | |
| TCAAGAATGGACGTCAAGCT+TGG | - | chr7_4:60050031-60050050 | Msa1167560:intron | 45.0% | |
| AAGGGATTTCGGTTGTGTGT+AGG | + | chr7_4:60050130-60050149 | None:intergenic | 45.0% | |
| AAGAGGTTCCCCATTCCTTA+TGG | - | chr7_4:60050264-60050283 | Msa1167560:CDS | 45.0% | |
| CCAAAACAGACACTGTGAAG+AGG | + | chr7_4:60050538-60050557 | None:intergenic | 45.0% | |
| ! | CCTCTTCACAGTGTCTGTTT+TGG | - | chr7_4:60050535-60050554 | Msa1167560:intron | 45.0% |
| !!! | TTCACAGTGTCTGTTTTGGC+TGG | - | chr7_4:60050539-60050558 | Msa1167560:intron | 45.0% |
| !!! | TCTGTTTTGGCTGGCTTTGT+GGG | - | chr7_4:60050548-60050567 | Msa1167560:intron | 45.0% |
| TAGCAAAAATGACCCCTGAG+AGG | + | chr7_4:60050634-60050653 | None:intergenic | 45.0% | |
| ! | TTTTGCTAGTGCTCTCACCA+TGG | - | chr7_4:60050646-60050665 | Msa1167560:CDS | 45.0% |
| TTTGCTAGTGCTCTCACCAT+GGG | - | chr7_4:60050647-60050666 | Msa1167560:CDS | 45.0% | |
| !! | TGTGCTGCTTCAATGACTCT+AGG | + | chr7_4:60051026-60051045 | None:intergenic | 45.0% |
| TGTGGTTGACTGTTAGCTAC+TGG | - | chr7_4:60051320-60051339 | Msa1167560:five_prime_UTR | 45.0% | |
| GGGAGGGAGTAACGTTGTTA+TGG | + | chr7_4:60047863-60047882 | None:intergenic | 50.0% | |
| AGAAACCGGATACGAGGTAG+AGG | + | chr7_4:60047956-60047975 | None:intergenic | 50.0% | |
| GAGAATCGCAACGGAGAAAC+CGG | + | chr7_4:60047970-60047989 | None:intergenic | 50.0% | |
| AAGAGCGGAGAGAATCGCAA+CGG | + | chr7_4:60047979-60047998 | None:intergenic | 50.0% | |
| TGCAGGAATTGGAGCCTAGT+TGG | - | chr7_4:60048168-60048187 | Msa1167560:three_prime_UTR | 50.0% | |
| ! | GCCTAGTTGGAGACTTGCTT+TGG | - | chr7_4:60048181-60048200 | Msa1167560:three_prime_UTR | 50.0% |
| GCCAAAGCAAGTCTCCAACT+AGG | + | chr7_4:60048185-60048204 | None:intergenic | 50.0% | |
| !!! | GGATCTGCTTTTGGAACCGT+TGG | - | chr7_4:60048224-60048243 | Msa1167560:three_prime_UTR | 50.0% |
| !!! | TCTGCTTTTGGAACCGTTGG+TGG | - | chr7_4:60048227-60048246 | Msa1167560:three_prime_UTR | 50.0% |
| !! | TTTGGAACCGTTGGTGGTGT+TGG | - | chr7_4:60048233-60048252 | Msa1167560:three_prime_UTR | 50.0% |
| GGACAGTGATGAGCCAGTAA+GGG | + | chr7_4:60048596-60048615 | None:intergenic | 50.0% | |
| AGGACAGTGATGAGCCAGTA+AGG | + | chr7_4:60048597-60048616 | None:intergenic | 50.0% | |
| GAGGATGAGTACAGGAAACC+TGG | - | chr7_4:60049752-60049771 | Msa1167560:CDS | 50.0% | |
| GCACTCTGTGGAATCTTAGG+TGG | - | chr7_4:60049828-60049847 | Msa1167560:intron | 50.0% | |
| AGAACCAAGTAGCCCTCCAA+CGG | + | chr7_4:60049856-60049875 | None:intergenic | 50.0% | |
| GGCCCTCTTCTCATTGAGAT+TGG | - | chr7_4:60049894-60049913 | Msa1167560:CDS | 50.0% | |
| !! | TGAGATTGGTGTCATCCCTC+AGG | - | chr7_4:60049908-60049927 | Msa1167560:CDS | 50.0% |
| ACCCCTTTCACATGCGGATT+TGG | - | chr7_4:60049949-60049968 | Msa1167560:intron | 50.0% | |
| AGCTAGGTGCGTGACTGTAT+GGG | + | chr7_4:60049993-60050012 | None:intergenic | 50.0% | |
| TAGCTAGGTGCGTGACTGTA+TGG | + | chr7_4:60049994-60050013 | None:intergenic | 50.0% | |
| AGTCACGCACCTAGCTACAT+CGG | - | chr7_4:60049997-60050016 | Msa1167560:intron | 50.0% | |
| CAATGGTCACCGATGTAGCT+AGG | + | chr7_4:60050009-60050028 | None:intergenic | 50.0% | |
| TCAGCCACATCAGTGGCAAT+TGG | + | chr7_4:60050084-60050103 | None:intergenic | 50.0% | |
| !!! | GTCTGTTTTGGCTGGCTTTG+TGG | - | chr7_4:60050547-60050566 | Msa1167560:intron | 50.0% |
| !! | AAGGCAGCGTTGATGAATGC+TGG | - | chr7_4:60050930-60050949 | Msa1167560:CDS | 50.0% |
| CAACGGAGAAACCGGATACG+AGG | + | chr7_4:60047962-60047981 | None:intergenic | 55.0% | |
| ACCACCACCAACACCACCAA+CGG | + | chr7_4:60048243-60048262 | None:intergenic | 55.0% | |
| GGAAAGAGCAGCAGCAGACT+TGG | + | chr7_4:60048309-60048328 | None:intergenic | 55.0% | |
| GGAATCTTAGGTGGGACCGT+TGG | - | chr7_4:60049837-60049856 | Msa1167560:intron | 55.0% | |
| ATCTTAGGTGGGACCGTTGG+AGG | - | chr7_4:60049840-60049859 | Msa1167560:intron | 55.0% | |
| TCTTAGGTGGGACCGTTGGA+GGG | - | chr7_4:60049841-60049860 | Msa1167560:intron | 55.0% | |
| GTTGGAGGGCTACTTGGTTC+TGG | - | chr7_4:60049855-60049874 | Msa1167560:intron | 55.0% | |
| GAATGGGGAACCTCTTGAGC+AGG | + | chr7_4:60050260-60050279 | None:intergenic | 55.0% | |
| !! | GGAACCGTTGGTGGTGTTGG+TGG | - | chr7_4:60048236-60048255 | Msa1167560:three_prime_UTR | 60.0% |
| !! | ACCGTTGGTGGTGTTGGTGG+TGG | - | chr7_4:60048239-60048258 | Msa1167560:three_prime_UTR | 60.0% |
| !! | GTTGGTGGTGTTGGTGGTGG+TGG | - | chr7_4:60048242-60048261 | Msa1167560:three_prime_UTR | 60.0% |
| !! | GGAGGGCTACTTGGTTCTGG+AGG | - | chr7_4:60049858-60049877 | Msa1167560:intron | 60.0% |
| !! | GGGCTACTTGGTTCTGGAGG+TGG | - | chr7_4:60049861-60049880 | Msa1167560:intron | 60.0% |
| CACGCAGTCAGCCACATCAG+TGG | + | chr7_4:60050091-60050110 | None:intergenic | 60.0% | |
| GGGACCGTTGGAGGGCTACT+TGG | - | chr7_4:60049849-60049868 | Msa1167560:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 60047842 | 60051352 | 60047842 | ID=Msa1167560;Name=Msa1167560 |
| chr7_4 | mRNA | 60047842 | 60051352 | 60047842 | ID=Msa1167560-mRNA-1;Parent=Msa1167560;Name=Msa1167560-mRNA-1;_AED=0.10;_eAED=0.10;_QI=85|0.9|0.90|1|1|1|11|500|411 |
| chr7_4 | exon | 60047842 | 60048424 | 60047842 | ID=Msa1167560-mRNA-1:exon:18699;Parent=Msa1167560-mRNA-1 |
| chr7_4 | exon | 60048526 | 60048666 | 60048526 | ID=Msa1167560-mRNA-1:exon:18698;Parent=Msa1167560-mRNA-1 |
| chr7_4 | exon | 60049315 | 60049504 | 60049315 | ID=Msa1167560-mRNA-1:exon:18697;Parent=Msa1167560-mRNA-1 |
| chr7_4 | exon | 60049724 | 60049774 | 60049724 | ID=Msa1167560-mRNA-1:exon:18696;Parent=Msa1167560-mRNA-1 |
| chr7_4 | exon | 60049870 | 60049956 | 60049870 | ID=Msa1167560-mRNA-1:exon:18695;Parent=Msa1167560-mRNA-1 |
| chr7_4 | exon | 60050058 | 60050113 | 60050058 | ID=Msa1167560-mRNA-1:exon:18694;Parent=Msa1167560-mRNA-1 |
| chr7_4 | exon | 60050256 | 60050304 | 60050256 | ID=Msa1167560-mRNA-1:exon:18693;Parent=Msa1167560-mRNA-1 |
| chr7_4 | exon | 60050399 | 60050460 | 60050399 | ID=Msa1167560-mRNA-1:exon:18692;Parent=Msa1167560-mRNA-1 |
| chr7_4 | exon | 60050558 | 60050758 | 60050558 | ID=Msa1167560-mRNA-1:exon:18691;Parent=Msa1167560-mRNA-1 |
| chr7_4 | exon | 60050862 | 60051021 | 60050862 | ID=Msa1167560-mRNA-1:exon:18690;Parent=Msa1167560-mRNA-1 |
| chr7_4 | exon | 60051112 | 60051352 | 60051112 | ID=Msa1167560-mRNA-1:exon:18689;Parent=Msa1167560-mRNA-1 |
| chr7_4 | five_prime_UTR | 60051268 | 60051352 | 60051268 | ID=Msa1167560-mRNA-1:five_prime_utr;Parent=Msa1167560-mRNA-1 |
| chr7_4 | CDS | 60051112 | 60051267 | 60051112 | ID=Msa1167560-mRNA-1:cds;Parent=Msa1167560-mRNA-1 |
| chr7_4 | CDS | 60050862 | 60051021 | 60050862 | ID=Msa1167560-mRNA-1:cds;Parent=Msa1167560-mRNA-1 |
| chr7_4 | CDS | 60050558 | 60050758 | 60050558 | ID=Msa1167560-mRNA-1:cds;Parent=Msa1167560-mRNA-1 |
| chr7_4 | CDS | 60050399 | 60050460 | 60050399 | ID=Msa1167560-mRNA-1:cds;Parent=Msa1167560-mRNA-1 |
| chr7_4 | CDS | 60050256 | 60050304 | 60050256 | ID=Msa1167560-mRNA-1:cds;Parent=Msa1167560-mRNA-1 |
| chr7_4 | CDS | 60050058 | 60050113 | 60050058 | ID=Msa1167560-mRNA-1:cds;Parent=Msa1167560-mRNA-1 |
| chr7_4 | CDS | 60049870 | 60049956 | 60049870 | ID=Msa1167560-mRNA-1:cds;Parent=Msa1167560-mRNA-1 |
| chr7_4 | CDS | 60049724 | 60049774 | 60049724 | ID=Msa1167560-mRNA-1:cds;Parent=Msa1167560-mRNA-1 |
| chr7_4 | CDS | 60049315 | 60049504 | 60049315 | ID=Msa1167560-mRNA-1:cds;Parent=Msa1167560-mRNA-1 |
| chr7_4 | CDS | 60048526 | 60048666 | 60048526 | ID=Msa1167560-mRNA-1:cds;Parent=Msa1167560-mRNA-1 |
| chr7_4 | CDS | 60048342 | 60048424 | 60048342 | ID=Msa1167560-mRNA-1:cds;Parent=Msa1167560-mRNA-1 |
| chr7_4 | three_prime_UTR | 60047842 | 60048341 | 60047842 | ID=Msa1167560-mRNA-1:three_prime_utr;Parent=Msa1167560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
