AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1042180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1042180 MtrunA17_Chr7g0265591 84.536 291 4 2 1 250 1 291 1.62e-171 483
Msa1042180 MtrunA17_Chr1g0179541 71.821 291 25 3 1 250 1 275 1.26e-139 402
Msa1042180 MtrunA17_Chr1g0197911 64.261 291 62 3 1 250 1 290 1.05e-129 377
Msa1042180 MtrunA17_Chr6g0448901 36.187 257 125 6 30 250 22 275 2.42e-42 150
Msa1042180 MtrunA17_Chr4g0043311 35.798 257 126 6 30 250 9 262 1.78e-41 148
Msa1042180 MtrunA17_Chr4g0043301 34.884 258 127 6 30 250 12 265 1.14e-40 145
Msa1042180 MtrunA17_Chr7g0263711 34.496 258 128 6 30 250 12 265 2.60e-40 145
Msa1042180 MtrunA17_Chr1g0206791 26.360 239 150 6 36 250 39 275 2.69e-20 89.4
Msa1042180 MtrunA17_Chr1g0188101 23.485 264 158 6 30 250 91 353 1.02e-17 82.0
Msa1042180 MtrunA17_Chr1g0202291 25.098 255 151 8 30 250 105 353 7.45e-16 76.6
Msa1042180 MtrunA17_Chr5g0400361 26.172 256 147 10 30 250 79 327 1.02e-15 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1042180 AT3G52990.1 69.759 291 47 2 1 250 1 291 2.13e-143 412
Msa1042180 AT2G36580.1 69.759 291 47 2 1 250 1 291 1.08e-141 408
Msa1042180 AT3G52990.2 72.152 237 40 1 40 250 2 238 1.06e-120 352
Msa1042180 AT5G63680.3 37.984 258 119 9 30 250 22 275 4.88e-41 147
Msa1042180 AT5G63680.1 37.984 258 119 9 30 250 22 275 4.88e-41 147
Msa1042180 AT5G63680.2 37.984 258 119 9 30 250 22 275 4.88e-41 147
Msa1042180 AT3G04050.1 34.884 258 127 6 30 250 18 271 1.07e-40 146
Msa1042180 AT3G25960.1 36.154 260 121 7 30 250 18 271 1.70e-40 145
Msa1042180 AT5G08570.1 37.354 257 122 8 30 250 22 275 6.06e-40 144
Msa1042180 AT5G08570.2 37.354 257 122 8 30 250 22 275 6.06e-40 144
Msa1042180 AT5G08570.3 37.354 257 122 8 30 250 22 275 6.06e-40 144
Msa1042180 AT3G55650.1 35.769 260 122 7 30 250 18 271 4.00e-39 142
Msa1042180 AT5G56350.1 35.019 257 128 5 30 250 10 263 4.97e-39 142
Msa1042180 AT4G26390.1 35.271 258 126 7 30 250 9 262 5.06e-39 142
Msa1042180 AT3G55810.1 34.694 245 127 7 30 250 18 253 7.80e-32 122
Msa1042180 AT3G22960.1 23.106 264 173 6 13 250 120 379 6.77e-16 77.4
Msa1042180 AT1G32440.1 27.344 256 144 10 30 250 101 349 3.67e-14 72.0

Find 68 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCCTGTCCCGTGGGAATT+TGG 0.209783 7_1:-79944140 Msa1042180:CDS
CCTTTCCCAAGAAACCTTCT+AGG 0.255659 7_1:-79946807 Msa1042180:five_prime_UTR
CTTGTAGAATCTCATCAAAA+TGG 0.282372 7_1:+79944176 None:intergenic
CGAGACATCGATTTCTCTTC+TGG 0.282504 7_1:-79945592 Msa1042180:CDS
GGCTCGTTTCGATTTCTCTT+GGG 0.295497 7_1:-79945883 Msa1042180:CDS
TAAATACCTAGAAGGTTTCT+TGG 0.305212 7_1:+79946801 None:intergenic
AATAAAGAGAGTTACGGTTT+TGG 0.323244 7_1:+79946585 None:intergenic
ATCCTGTCCCGTGGGAATTT+GGG 0.333494 7_1:-79944139 Msa1042180:CDS
ACATCAACAGAACGAGATTT+AGG 0.351502 7_1:+79946447 None:intergenic
ATGCAGGTAGCTGAAGTTGC+AGG 0.364418 7_1:-79944821 Msa1042180:intron
GGTTATTCTGACTCCTGATC+AGG 0.370339 7_1:-79945559 Msa1042180:CDS
TTCTCTTCTGGCTGATAGTC+AGG 0.372569 7_1:-79945580 Msa1042180:CDS
TGGCTCGTTTCGATTTCTCT+TGG 0.378384 7_1:-79945884 Msa1042180:CDS
CGTGAATTCCTATCTACATT+AGG 0.397506 7_1:-79944361 Msa1042180:CDS
TGCTTATCGAAGAACCTATT+CGG 0.398360 7_1:-79946630 Msa1042180:CDS
TTCTATCATTGTCATATACT+AGG 0.404351 7_1:-79944531 Msa1042180:CDS
CCAACGATCCTTGTCATTGC+AGG 0.416212 7_1:+79946480 None:intergenic
TTTCAATTTAAATACCTAGA+AGG 0.416260 7_1:+79946793 None:intergenic
AAATACCTAGAAGGTTTCTT+GGG 0.423064 7_1:+79946802 None:intergenic
GAAGCTTCTTGCCCCTGATC+AGG 0.424080 7_1:+79945546 None:intergenic
TTATCTTTGTCAGGTTATGC+TGG 0.425942 7_1:-79945652 Msa1042180:intron
ACAAAGAATCTAACCTTCTC+TGG 0.426853 7_1:+79944103 None:intergenic
GACAAGGATCGTTGGTACCT+TGG 0.439000 7_1:-79946472 Msa1042180:CDS
TTAGATCACCTAATGTAGAT+AGG 0.440673 7_1:+79944353 None:intergenic
CGTTGCAGGTTATAAGCACC+TGG 0.444294 7_1:-79944576 Msa1042180:intron
ACAAGGATCGTTGGTACCTT+GGG 0.449685 7_1:-79946471 Msa1042180:CDS
GGTAGCTGAAGTTGCAGGGC+AGG 0.452201 7_1:-79944816 Msa1042180:CDS
TTTAAATTGAAAACACCCTT+CGG 0.454806 7_1:-79946782 Msa1042180:five_prime_UTR
GCGAGTCCATCAAAATTGAT+AGG 0.466027 7_1:+79945510 None:intergenic
TTGAATGAAAACCCTAGAAC+AGG 0.467620 7_1:+79946684 None:intergenic
TTGTAGAATCTCATCAAAAT+GGG 0.469141 7_1:+79944177 None:intergenic
TCAAATTCTCCAGAGTCTCT+TGG 0.476017 7_1:+79945844 None:intergenic
AGGATTGAGATCATCCGAAT+AGG 0.477926 7_1:+79946616 None:intergenic
TGCCCAAATTCCCACGGGAC+AGG 0.479289 7_1:+79944137 None:intergenic
CAGAGTCTCTTGGTGATACT+CGG 0.479993 7_1:+79945854 None:intergenic
CACAGTTGGTGCTGAGATGC+AGG 0.480762 7_1:-79945628 Msa1042180:CDS
AAAATTCAGCAACATTGGCT+GGG 0.497257 7_1:-79944775 Msa1042180:CDS
GGATCAGTGCAGTGAATGAA+TGG 0.502189 7_1:+79946743 None:intergenic
CCTAGAAGGTTTCTTGGGAA+AGG 0.514430 7_1:+79946807 None:intergenic
GCTCGTTTCGATTTCTCTTG+GGG 0.528280 7_1:-79945882 Msa1042180:CDS
CGAGTATCACCAAGAGACTC+TGG 0.530303 7_1:-79945853 Msa1042180:CDS
AAAGAGAATAAGAAGAACGT+TGG 0.530451 7_1:+79946722 None:intergenic
GATCAGTGCAGTGAATGAAT+GGG 0.535681 7_1:+79946744 None:intergenic
CATTGATCTTCCACCAGAGA+AGG 0.538672 7_1:-79944116 Msa1042180:intron
GTTATTCTGACTCCTGATCA+GGG 0.540498 7_1:-79945558 Msa1042180:CDS
GCATGCTGAAGATGTTCGCC+AGG 0.542398 7_1:-79944509 Msa1042180:intron
TGCAAAGATTGAAAATGTTG+AGG 0.562117 7_1:-79944314 Msa1042180:intron
ATGAATTTGAGAAGCATGCA+AGG 0.564591 7_1:+79944742 None:intergenic
AAATTCAGCAACATTGGCTG+GGG 0.568820 7_1:-79944774 Msa1042180:CDS
ATGGTATCATCCTGTCCCGT+GGG 0.573971 7_1:-79944147 Msa1042180:CDS
CCTGCAATGACAAGGATCGT+TGG 0.575101 7_1:-79946480 Msa1042180:CDS
TGCAGGTAGCTGAAGTTGCA+GGG 0.589511 7_1:-79944820 Msa1042180:intron
AGAAGGTTTCTTGGGAAAGG+AGG 0.594150 7_1:+79946810 None:intergenic
GGCTGCGTGAAGAGACCGAA+GGG 0.595137 7_1:+79946767 None:intergenic
CAGGTTATGCTGGACACAGT+TGG 0.598071 7_1:-79945642 Msa1042180:CDS
AAGAATCTAACCTTCTCTGG+TGG 0.606089 7_1:+79944106 None:intergenic
ATCAATGCCCAAATTCCCAC+GGG 0.610460 7_1:+79944132 None:intergenic
ATAGAAGCAAAATATAAAAG+CGG 0.617174 7_1:-79946842 Msa1042180:five_prime_UTR
GATCAATGCCCAAATTCCCA+CGG 0.634784 7_1:+79944131 None:intergenic
GAGATTCTACAAGAAGCTGA+TGG 0.641940 7_1:-79944166 Msa1042180:CDS
GATGGTATCATCCTGTCCCG+TGG 0.642911 7_1:-79944148 Msa1042180:CDS
GTTGCAGGTTATAAGCACCT+GGG 0.643633 7_1:-79944575 Msa1042180:intron
AGAACGAGATTTAGGTCCCA+AGG 0.654867 7_1:+79946455 None:intergenic
TTGCAGGTTATAAGCACCTG+GGG 0.665801 7_1:-79944574 Msa1042180:intron
GGGCTGCGTGAAGAGACCGA+AGG 0.685164 7_1:+79946766 None:intergenic
ATCAGTGCAGTGAATGAATG+GGG 0.686519 7_1:+79946745 None:intergenic
TTATTCTGACTCCTGATCAG+GGG 0.688878 7_1:-79945557 Msa1042180:CDS
TCAGTGCAGTGAATGAATGG+GGG 0.757666 7_1:+79946746 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTTTTTTTTTTTTTT+TGG - chr7_1:79945660-79945679 Msa1042180:intron 0.0%
!! ATATAAAAGTTATTAACAAA+TGG + chr7_1:79945897-79945916 None:intergenic 10.0%
!!! ATATTTCTAAATCTATATAA+TGG - chr7_1:79945961-79945980 Msa1042180:intron 10.0%
!!! TATTTCTAAATCTATATAAT+GGG - chr7_1:79945962-79945981 Msa1042180:intron 10.0%
!!! TTTTTATTGATATGTTGATT+AGG - chr7_1:79944892-79944911 Msa1042180:intron 15.0%
!!! TTATATTTATATTGCGATTT+TGG - chr7_1:79945911-79945930 Msa1042180:intron 15.0%
!!! TTATATATCTGTTTCTTTTT+AGG - chr7_1:79946678-79946697 Msa1042180:five_prime_UTR 15.0%
!!! TATATATCTGTTTCTTTTTA+GGG - chr7_1:79946679-79946698 Msa1042180:five_prime_UTR 15.0%
!! ATAGAAGCAAAATATAAAAG+CGG - chr7_1:79944042-79944061 Msa1042180:intron 20.0%
!! TTTCAATTTAAATACCTAGA+AGG + chr7_1:79944094-79944113 None:intergenic 20.0%
!! TAAATCCAACATTTAATAGA+CGG - chr7_1:79944944-79944963 Msa1042180:intron 20.0%
!!! TGTTTTTGTTTGTTTTGTTA+TGG - chr7_1:79945144-79945163 Msa1042180:intron 20.0%
!! TTGAAAATTTAAATGAACCT+TGG + chr7_1:79945399-79945418 None:intergenic 20.0%
!! AAACAGTATGAATAAGATTA+AGG + chr7_1:79945535-79945554 None:intergenic 20.0%
!! AAGGAAAAATTTATTCCAAT+AGG - chr7_1:79945816-79945835 Msa1042180:CDS 20.0%
!!! ATCTTATGTGTTTAAAATAC+AGG - chr7_1:79946498-79946517 Msa1042180:intron 20.0%
! TTTAAATTGAAAACACCCTT+CGG - chr7_1:79944102-79944121 Msa1042180:intron 25.0%
! AAGAAGAATAAAGAGAGTTA+CGG + chr7_1:79944308-79944327 None:intergenic 25.0%
! AATATATATACCAGACATTC+CGG + chr7_1:79944483-79944502 None:intergenic 25.0%
! AATAACCGTCTATTAAATGT+TGG + chr7_1:79944952-79944971 None:intergenic 25.0%
!!! TTTTGTAATGTTTGTTGTAG+TGG - chr7_1:79944980-79944999 Msa1042180:intron 25.0%
! TGTTAAAAATTCAGCAACAT+TGG - chr7_1:79946104-79946123 Msa1042180:intron 25.0%
! TTCTATCATTGTCATATACT+AGG - chr7_1:79946353-79946372 Msa1042180:intron 25.0%
! TTGTAGAATCTCATCAAAAT+GGG + chr7_1:79946710-79946729 None:intergenic 25.0%
AAATACCTAGAAGGTTTCTT+GGG + chr7_1:79944085-79944104 None:intergenic 30.0%
TAAATACCTAGAAGGTTTCT+TGG + chr7_1:79944086-79944105 None:intergenic 30.0%
AAAGAGAATAAGAAGAACGT+TGG + chr7_1:79944165-79944184 None:intergenic 30.0%
! AATAAAGAGAGTTACGGTTT+TGG + chr7_1:79944302-79944321 None:intergenic 30.0%
! CACTTCCATAATCAATTTTG+TGG - chr7_1:79944658-79944677 Msa1042180:intron 30.0%
TGAAGCCACAAAATTGATTA+TGG + chr7_1:79944666-79944685 None:intergenic 30.0%
GTTTAGATTAACCTAGAGAT+TGG - chr7_1:79944720-79944739 Msa1042180:CDS 30.0%
TAATAGACGGTTATTTGATG+TGG - chr7_1:79944957-79944976 Msa1042180:intron 30.0%
! ACTTTTGTTGAGTGTTTTGT+TGG - chr7_1:79945201-79945220 Msa1042180:intron 30.0%
! GTTTCTTTGTTATCTTTGTC+AGG - chr7_1:79945223-79945242 Msa1042180:intron 30.0%
! ATACTGCCTATCAATTTTGA+TGG - chr7_1:79945368-79945387 Msa1042180:intron 30.0%
!! TTTTTGGTAGATAGACGAAA+TGG - chr7_1:79945676-79945695 Msa1042180:intron 30.0%
TTGTGTGTGTGAGTTTATAA+TGG + chr7_1:79945707-79945726 None:intergenic 30.0%
ATAAAAGAAACCTACAATCC+AGG + chr7_1:79946266-79946285 None:intergenic 30.0%
! TGTAGGTTTCTTTTATGTTC+TGG - chr7_1:79946270-79946289 Msa1042180:intron 30.0%
!!! GTATAATTTTTTCTCGTTGC+AGG - chr7_1:79946294-79946313 Msa1042180:intron 30.0%
!!! AATTTTGTTTTTTACTCCCC+AGG + chr7_1:79946329-79946348 None:intergenic 30.0%
!! TTTCTTTCTATTTCTGTTCC+AGG - chr7_1:79946461-79946480 Msa1042180:CDS 30.0%
AGATATGTTAGTAGAAATCC+TGG + chr7_1:79946482-79946501 None:intergenic 30.0%
TTAGATCACCTAATGTAGAT+AGG + chr7_1:79946534-79946553 None:intergenic 30.0%
TCTTTGCAAAAATTTGAGTC+TGG + chr7_1:79946558-79946577 None:intergenic 30.0%
TGCAAAGATTGAAAATGTTG+AGG - chr7_1:79946570-79946589 Msa1042180:intron 30.0%
TTGAAAATGTTGAGGTGAAT+TGG - chr7_1:79946578-79946597 Msa1042180:intron 30.0%
TGGATTTCTTAATTCTGTAC+TGG - chr7_1:79946598-79946617 Msa1042180:intron 30.0%
CTTGTAGAATCTCATCAAAA+TGG + chr7_1:79946711-79946730 None:intergenic 30.0%
TTGAATGAAAACCCTAGAAC+AGG + chr7_1:79944203-79944222 None:intergenic 35.0%
TGCTTATCGAAGAACCTATT+CGG - chr7_1:79944254-79944273 Msa1042180:intron 35.0%
ACATCAACAGAACGAGATTT+AGG + chr7_1:79944440-79944459 None:intergenic 35.0%
ATTTCTTCTTGTCTCAAAGC+CGG - chr7_1:79944461-79944480 Msa1042180:intron 35.0%
TTTGTGGCTTCAAACAAATG+TGG - chr7_1:79944674-79944693 Msa1042180:intron 35.0%
ACAAATGTGGAACCAAACAT+AGG - chr7_1:79944687-79944706 Msa1042180:intron 35.0%
ATATCCAAACATACACCGAA+AGG - chr7_1:79944825-79944844 Msa1042180:intron 35.0%
! AAAACCTTTCGGTGTATGTT+TGG + chr7_1:79944832-79944851 None:intergenic 35.0%
CTAGATGGTGTAAAACCTTT+CGG + chr7_1:79944843-79944862 None:intergenic 35.0%
! TTGTTATGGTCAACGTTTTG+TGG - chr7_1:79945158-79945177 Msa1042180:intron 35.0%
! TGTTATGGTCAACGTTTTGT+GGG - chr7_1:79945159-79945178 Msa1042180:intron 35.0%
TTATCTTTGTCAGGTTATGC+TGG - chr7_1:79945232-79945251 Msa1042180:intron 35.0%
TGAATCAGGTAAATTCACAG+AGG + chr7_1:79945423-79945442 None:intergenic 35.0%
ATACTGTTTACAGTCAGTGA+AGG - chr7_1:79945546-79945565 Msa1042180:CDS 35.0%
!! CAAGTATTGACCAACGAAAA+TGG + chr7_1:79945581-79945600 None:intergenic 35.0%
GAAGTGAAACTACTTCTGTA+TGG - chr7_1:79945608-79945627 Msa1042180:CDS 35.0%
GTAAGATAAGTGGATCTGAA+AGG - chr7_1:79945637-79945656 Msa1042180:CDS 35.0%
TATAAACTCACACACACAAG+TGG - chr7_1:79945708-79945727 Msa1042180:intron 35.0%
! CGCTTTCTATGTTGTTATTG+TGG - chr7_1:79945840-79945859 Msa1042180:CDS 35.0%
!! CAACTTTTTCTATTCATGCC+AGG + chr7_1:79946001-79946020 None:intergenic 35.0%
AATTCTACCTGAAACTATGC+AGG - chr7_1:79946047-79946066 Msa1042180:intron 35.0%
AAAAATTCAGCAACATTGGC+TGG - chr7_1:79946108-79946127 Msa1042180:intron 35.0%
! AAAATTCAGCAACATTGGCT+GGG - chr7_1:79946109-79946128 Msa1042180:intron 35.0%
! ATGAATTTGAGAAGCATGCA+AGG + chr7_1:79946145-79946164 None:intergenic 35.0%
TGAAACCAACACAAAAGATG+TGG + chr7_1:79946412-79946431 None:intergenic 35.0%
CGTGAATTCCTATCTACATT+AGG - chr7_1:79946523-79946542 Msa1042180:intron 35.0%
TTGAATCAGCATAGCTGATA+AGG + chr7_1:79946652-79946671 None:intergenic 35.0%
ACAAAGAATCTAACCTTCTC+TGG + chr7_1:79946784-79946803 None:intergenic 35.0%
ATCAGTGCAGTGAATGAATG+GGG + chr7_1:79944142-79944161 None:intergenic 40.0%
GATCAGTGCAGTGAATGAAT+GGG + chr7_1:79944143-79944162 None:intergenic 40.0%
AGGATTGAGATCATCCGAAT+AGG + chr7_1:79944271-79944290 None:intergenic 40.0%
!!! GCTTTTTTCCTGCAATGACA+AGG - chr7_1:79944396-79944415 Msa1042180:intron 40.0%
ACATACGCTTAGCCTATGTT+TGG + chr7_1:79944702-79944721 None:intergenic 40.0%
! ACGTGATTTTGCCAATCTCT+AGG + chr7_1:79944734-79944753 None:intergenic 40.0%
ACAACAAGTCACACACTAGA+TGG + chr7_1:79944858-79944877 None:intergenic 40.0%
TCAAATTCTCCAGAGTCTCT+TGG + chr7_1:79945043-79945062 None:intergenic 40.0%
GTTATTCTGACTCCTGATCA+GGG - chr7_1:79945326-79945345 Msa1042180:intron 40.0%
TTATTCTGACTCCTGATCAG+GGG - chr7_1:79945327-79945346 Msa1042180:intron 40.0%
GCGAGTCCATCAAAATTGAT+AGG + chr7_1:79945377-79945396 None:intergenic 40.0%
!! CTAAGCATTGGTAGTTGGTA+GGG + chr7_1:79945452-79945471 None:intergenic 40.0%
!! CTAAGCTAAGCATTGGTAGT+TGG + chr7_1:79945457-79945476 None:intergenic 40.0%
! TTTTGCGCTAAGCTAAGCAT+TGG + chr7_1:79945464-79945483 None:intergenic 40.0%
GTTGGTCAATACTTGTTCAC+AGG - chr7_1:79945586-79945605 Msa1042180:CDS 40.0%
AACTACTTCTGTATGGCTAG+AGG - chr7_1:79945615-79945634 Msa1042180:CDS 40.0%
ATGGCTAGAGGTAAGATAAG+TGG - chr7_1:79945627-79945646 Msa1042180:CDS 40.0%
AAATGCCGAAATTGTTAGGC+CGG + chr7_1:79945766-79945785 None:intergenic 40.0%
GGCAAAATGCCGAAATTGTT+AGG + chr7_1:79945770-79945789 None:intergenic 40.0%
CAACATAGAAAGCGACCTAT+TGG + chr7_1:79945834-79945853 None:intergenic 40.0%
! TTTTCTATTCATGCCAGGCT+AGG + chr7_1:79945996-79946015 None:intergenic 40.0%
! AAATTCAGCAACATTGGCTG+GGG - chr7_1:79946110-79946129 Msa1042180:intron 40.0%
!!! TTGTCTTTTTCAGTGAGGGT+AGG + chr7_1:79946177-79946196 None:intergenic 40.0%
TACCCTCACTGAAAAAGACA+AGG - chr7_1:79946176-79946195 Msa1042180:intron 40.0%
!!! CTCCTTGTCTTTTTCAGTGA+GGG + chr7_1:79946181-79946200 None:intergenic 40.0%
CAGAAGCTCTACATGTTTGA+CGG + chr7_1:79946239-79946258 None:intergenic 40.0%
GATGTGGAACACAAATTACC+TGG + chr7_1:79946396-79946415 None:intergenic 40.0%
! GTGTTCCACATCTTTTGTGT+TGG - chr7_1:79946404-79946423 Msa1042180:intron 40.0%
! CATCGTCTGAAGTTCAGAAT+TGG - chr7_1:79946430-79946449 Msa1042180:intron 40.0%
GAGATTCTACAAGAAGCTGA+TGG - chr7_1:79946718-79946737 Msa1042180:five_prime_UTR 40.0%
AAGAATCTAACCTTCTCTGG+TGG + chr7_1:79946781-79946800 None:intergenic 40.0%
! ATCCTGTGTTGTTGTGCTTT+AGG - chr7_1:79946845-79946864 Msa1042180:five_prime_UTR 40.0%
AGAAGGTTTCTTGGGAAAGG+AGG + chr7_1:79944077-79944096 None:intergenic 45.0%
CCTAGAAGGTTTCTTGGGAA+AGG + chr7_1:79944080-79944099 None:intergenic 45.0%
CCTTTCCCAAGAAACCTTCT+AGG - chr7_1:79944077-79944096 Msa1042180:intron 45.0%
TCAGTGCAGTGAATGAATGG+GGG + chr7_1:79944141-79944160 None:intergenic 45.0%
GGATCAGTGCAGTGAATGAA+TGG + chr7_1:79944144-79944163 None:intergenic 45.0%
!! AAGAGAGTTACGGTTTTGGC+TGG + chr7_1:79944298-79944317 None:intergenic 45.0%
ACAAGGATCGTTGGTACCTT+GGG - chr7_1:79944413-79944432 Msa1042180:intron 45.0%
AGAACGAGATTTAGGTCCCA+AGG + chr7_1:79944432-79944451 None:intergenic 45.0%
AAAATCACGTTGAGCCACTG+TGG - chr7_1:79944744-79944763 Msa1042180:CDS 45.0%
TGGCTCGTTTCGATTTCTCT+TGG - chr7_1:79945000-79945019 Msa1042180:intron 45.0%
GGCTCGTTTCGATTTCTCTT+GGG - chr7_1:79945001-79945020 Msa1042180:intron 45.0%
GCTCGTTTCGATTTCTCTTG+GGG - chr7_1:79945002-79945021 Msa1042180:intron 45.0%
! CAGAGTCTCTTGGTGATACT+CGG + chr7_1:79945033-79945052 None:intergenic 45.0%
AAGAAGCTCTGTGCTGTAAG+TGG - chr7_1:79945083-79945102 Msa1042180:intron 45.0%
!! CGAGACATCGATTTCTCTTC+TGG - chr7_1:79945292-79945311 Msa1042180:intron 45.0%
! TTCTCTTCTGGCTGATAGTC+AGG - chr7_1:79945304-79945323 Msa1042180:intron 45.0%
GGTTATTCTGACTCCTGATC+AGG - chr7_1:79945325-79945344 Msa1042180:intron 45.0%
!!! CAATTTTGATGGACTCGCCA+AGG - chr7_1:79945379-79945398 Msa1042180:intron 45.0%
TGGTAGGGATAACGTGAATC+AGG + chr7_1:79945437-79945456 None:intergenic 45.0%
!! GCTAAGCATTGGTAGTTGGT+AGG + chr7_1:79945453-79945472 None:intergenic 45.0%
CTGTTTACAGTCAGTGAAGG+CGG - chr7_1:79945549-79945568 Msa1042180:CDS 45.0%
TGTTTACAGTCAGTGAAGGC+GGG - chr7_1:79945550-79945569 Msa1042180:CDS 45.0%
AAACTCACACACACAAGTGG+AGG - chr7_1:79945711-79945730 Msa1042180:intron 45.0%
CTAGGACTTCTGGATCTGAA+AGG - chr7_1:79945797-79945816 Msa1042180:intron 45.0%
TCAGCTACCTGCATAGTTTC+AGG + chr7_1:79946057-79946076 None:intergenic 45.0%
!!! CCTCCTTGTCTTTTTCAGTG+AGG + chr7_1:79946182-79946201 None:intergenic 45.0%
CCTCACTGAAAAAGACAAGG+AGG - chr7_1:79946179-79946198 Msa1042180:intron 45.0%
GTTGCAGGTTATAAGCACCT+GGG - chr7_1:79946309-79946328 Msa1042180:intron 45.0%
TTGCAGGTTATAAGCACCTG+GGG - chr7_1:79946310-79946329 Msa1042180:intron 45.0%
ATCAATGCCCAAATTCCCAC+GGG + chr7_1:79946755-79946774 None:intergenic 45.0%
GATCAATGCCCAAATTCCCA+CGG + chr7_1:79946756-79946775 None:intergenic 45.0%
CATTGATCTTCCACCAGAGA+AGG - chr7_1:79946768-79946787 Msa1042180:five_prime_UTR 45.0%
TGCCTAAAGCACAACAACAC+AGG + chr7_1:79946850-79946869 None:intergenic 45.0%
! TCGCTGCGTTTTCCTGTTCT+AGG - chr7_1:79944188-79944207 Msa1042180:intron 50.0%
! CGCTGCGTTTTCCTGTTCTA+GGG - chr7_1:79944189-79944208 Msa1042180:intron 50.0%
!!! TTACGGTTTTGGCTGGCTCA+AGG + chr7_1:79944291-79944310 None:intergenic 50.0%
CCAACGATCCTTGTCATTGC+AGG + chr7_1:79944407-79944426 None:intergenic 50.0%
CCTGCAATGACAAGGATCGT+TGG - chr7_1:79944404-79944423 Msa1042180:intron 50.0%
GACAAGGATCGTTGGTACCT+TGG - chr7_1:79944412-79944431 Msa1042180:intron 50.0%
TGTCTCAAAGCCGGAATGTC+TGG - chr7_1:79944470-79944489 Msa1042180:intron 50.0%
! ACGTTGAGCCACTGTGGTTT+TGG - chr7_1:79944750-79944769 Msa1042180:CDS 50.0%
AACTTGCGCCAAAACCACAG+TGG + chr7_1:79944761-79944780 None:intergenic 50.0%
!!! TGTGGTTTTGGCGCAAGTTG+TGG - chr7_1:79944762-79944781 Msa1042180:CDS 50.0%
CGAGTATCACCAAGAGACTC+TGG - chr7_1:79945031-79945050 Msa1042180:intron 50.0%
CAGGTTATGCTGGACACAGT+TGG - chr7_1:79945242-79945261 Msa1042180:intron 50.0%
! ACACACACAAGTGGAGGTAC+CGG - chr7_1:79945717-79945736 Msa1042180:intron 50.0%
GGCATCCGGCCTAACAATTT+CGG - chr7_1:79945758-79945777 Msa1042180:intron 50.0%
! GGCATTTTGCCAGTTGAGCT+AGG - chr7_1:79945779-79945798 Msa1042180:intron 50.0%
TCCAGAAGTCCTAGCTCAAC+TGG + chr7_1:79945791-79945810 None:intergenic 50.0%
TCTATTCATGCCAGGCTAGG+TGG + chr7_1:79945993-79946012 None:intergenic 50.0%
ATGCAGGTAGCTGAAGTTGC+AGG - chr7_1:79946063-79946082 Msa1042180:intron 50.0%
TGCAGGTAGCTGAAGTTGCA+GGG - chr7_1:79946064-79946083 Msa1042180:intron 50.0%
ATGTAGAGCTTCTGTCTGCC+TGG - chr7_1:79946245-79946264 Msa1042180:intron 50.0%
CTTCTGTCTGCCTGGATTGT+AGG - chr7_1:79946253-79946272 Msa1042180:intron 50.0%
CGTTGCAGGTTATAAGCACC+TGG - chr7_1:79946308-79946327 Msa1042180:intron 50.0%
ATGGTATCATCCTGTCCCGT+GGG - chr7_1:79946737-79946756 Msa1042180:five_prime_UTR 50.0%
ATCCTGTCCCGTGGGAATTT+GGG - chr7_1:79946745-79946764 Msa1042180:five_prime_UTR 50.0%
!! CACAGTTGGTGCTGAGATGC+AGG - chr7_1:79945256-79945275 Msa1042180:intron 55.0%
GAAGCTTCTTGCCCCTGATC+AGG + chr7_1:79945341-79945360 None:intergenic 55.0%
! GCGGGAGACACCATTTTCGT+TGG - chr7_1:79945568-79945587 Msa1042180:CDS 55.0%
!! CACACACAAGTGGAGGTACC+GGG - chr7_1:79945718-79945737 Msa1042180:intron 55.0%
!! ACACACAAGTGGAGGTACCG+GGG - chr7_1:79945719-79945738 Msa1042180:intron 55.0%
GCCAGTTGAGCTAGGACTTC+TGG - chr7_1:79945787-79945806 Msa1042180:intron 55.0%
GCATGCTGAAGATGTTCGCC+AGG - chr7_1:79946375-79946394 Msa1042180:intron 55.0%
GATGGTATCATCCTGTCCCG+TGG - chr7_1:79946736-79946755 Msa1042180:five_prime_UTR 55.0%
CATCCTGTCCCGTGGGAATT+TGG - chr7_1:79946744-79946763 Msa1042180:five_prime_UTR 55.0%
GGCTGCGTGAAGAGACCGAA+GGG + chr7_1:79944120-79944139 None:intergenic 60.0%
!! AGGTACCGGGGTTCGAACCT+CGG - chr7_1:79945731-79945750 Msa1042180:intron 60.0%
CATGACCGAGGTTCGAACCC+CGG + chr7_1:79945739-79945758 None:intergenic 60.0%
CGAACCTCGGTCATGGCATC+CGG - chr7_1:79945744-79945763 Msa1042180:intron 60.0%
TCATGCCAGGCTAGGTGGCT+AGG + chr7_1:79945988-79946007 None:intergenic 60.0%
GGTAGCTGAAGTTGCAGGGC+AGG - chr7_1:79946068-79946087 Msa1042180:intron 60.0%
TGCCCAAATTCCCACGGGAC+AGG + chr7_1:79946750-79946769 None:intergenic 60.0%
GGGCTGCGTGAAGAGACCGA+AGG + chr7_1:79944121-79944140 None:intergenic 65.0%
CGGGGTTCGAACCTCGGTCA+TGG - chr7_1:79945737-79945756 Msa1042180:intron 65.0%
TAGGCCGGATGCCATGACCG+AGG + chr7_1:79945751-79945770 None:intergenic 65.0%
ATGGGCCTAGCCACCTAGCC+TGG - chr7_1:79945980-79945999 Msa1042180:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 79944031 79946875 79944031 ID=Msa1042180;Name=Msa1042180
chr7_1 mRNA 79944031 79946875 79944031 ID=Msa1042180-mRNA-1;Parent=Msa1042180;Name=Msa1042180-mRNA-1;_AED=0.18;_eAED=0.18;_QI=207|0.25|0.33|0.88|1|1|9|0|252
chr7_1 exon 79944031 79944039 79944031 ID=Msa1042180-mRNA-1:exon:21697;Parent=Msa1042180-mRNA-1
chr7_1 exon 79944117 79944206 79944117 ID=Msa1042180-mRNA-1:exon:21696;Parent=Msa1042180-mRNA-1
chr7_1 exon 79944315 79944386 79944315 ID=Msa1042180-mRNA-1:exon:21695;Parent=Msa1042180-mRNA-1
chr7_1 exon 79944510 79944590 79944510 ID=Msa1042180-mRNA-1:exon:21694;Parent=Msa1042180-mRNA-1
chr7_1 exon 79944706 79944837 79944706 ID=Msa1042180-mRNA-1:exon:21693;Parent=Msa1042180-mRNA-1
chr7_1 exon 79945506 79945661 79945506 ID=Msa1042180-mRNA-1:exon:21692;Parent=Msa1042180-mRNA-1
chr7_1 exon 79945809 79945906 79945809 ID=Msa1042180-mRNA-1:exon:21691;Parent=Msa1042180-mRNA-1
chr7_1 exon 79946460 79946511 79946460 ID=Msa1042180-mRNA-1:exon:21690;Parent=Msa1042180-mRNA-1
chr7_1 exon 79946600 79946875 79946600 ID=Msa1042180-mRNA-1:exon:21689;Parent=Msa1042180-mRNA-1
chr7_1 five_prime_UTR 79946669 79946875 79946669 ID=Msa1042180-mRNA-1:five_prime_utr;Parent=Msa1042180-mRNA-1
chr7_1 CDS 79946600 79946668 79946600 ID=Msa1042180-mRNA-1:cds;Parent=Msa1042180-mRNA-1
chr7_1 CDS 79946460 79946511 79946460 ID=Msa1042180-mRNA-1:cds;Parent=Msa1042180-mRNA-1
chr7_1 CDS 79945809 79945906 79945809 ID=Msa1042180-mRNA-1:cds;Parent=Msa1042180-mRNA-1
chr7_1 CDS 79945506 79945661 79945506 ID=Msa1042180-mRNA-1:cds;Parent=Msa1042180-mRNA-1
chr7_1 CDS 79944706 79944837 79944706 ID=Msa1042180-mRNA-1:cds;Parent=Msa1042180-mRNA-1
chr7_1 CDS 79944510 79944590 79944510 ID=Msa1042180-mRNA-1:cds;Parent=Msa1042180-mRNA-1
chr7_1 CDS 79944315 79944386 79944315 ID=Msa1042180-mRNA-1:cds;Parent=Msa1042180-mRNA-1
chr7_1 CDS 79944117 79944206 79944117 ID=Msa1042180-mRNA-1:cds;Parent=Msa1042180-mRNA-1
chr7_1 CDS 79944031 79944039 79944031 ID=Msa1042180-mRNA-1:cds;Parent=Msa1042180-mRNA-1
Gene Sequence

>Msa1042180

ATGCATTCAAGTAACTTGCTTATCGAAGAACCTATTCGGATGATCTCAATCCTTGAGCCAGCCAAAACCAGCTTTTTTCCTGCAATGACAAGGATCGTTGGTACCTTGGGACCTAAATCTCTGGCTCGTTTCGATTTCTCTTGGGGTGACTCCGAGTATCACCAAGAGACTCTGGAGAATTTGAAGACTGCTATCAAAACTACTAAGAAGCTCTGTGCTGTTATGCTGGACACAGTTGGTGCTGAGATGCAGGTTGTTAACAAAAACGAGACATCGATTTCTCTTCTGGCTGATAGTCAGGTTATTCTGACTCCTGATCAGGGGCAAGAAGCTTCTTCAGAGATACTGCCTATCAATTTTGATGGACTCGCCAAGGTAGCTGAAGTTGCAGGGCAGGACGTTGTTTGTACTGTTAAAAATTCAGCAACATTGGCTGGGGCATTGTTTACCTTGCATGCTTCTCAAATTCATATTGATTTGCCTACCCTCACTGAAAAAGACAAGGAGGTTATAAGCACCTGGGGAGTAAAAAACAAAATTGATTTTCTATCATTGTCATATACTAGGCATGCTGAAGATGTTCGCCAGGCACGTGAATTCCTATCTACATTAGGTGATCTAAGCCAGACTCAAATTTTTGCAAAGATTGAAAATGTTGAGGGATTGACCCATTTTGATGAGATTCTACAAGAAGCTGATGGTATCATCCTGTCCCGTGGGAATTTGGGCATTGATCTTCCACCAGAGAAGGCATGTTGA
Protein sequence

>Msa1042180

MHSSNLLIEEPIRMISILEPAKTSFFPAMTRIVGTLGPKSLARFDFSWGDSEYHQETLENLKTAIKTTKKLCAVMLDTVGAEMQVVNKNETSISLLADSQVILTPDQGQEASSEILPINFDGLAKVAEVAGQDVVCTVKNSATLAGALFTLHASQIHIDLPTLTEKDKEVISTWGVKNKIDFLSLSYTRHAEDVRQAREFLSTLGDLSQTQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKAC*