AlfalfaGEDB | Msa1042750

M. sativa cultivar zhongmu-4 / Msa1042750

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042750	QDX01725.1	100.000	328	0	0	1	328	1	328	0.0	684

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042750	sp\|O49255\|NAC29_ARATH	66.463	164	53	1	7	170	5	166	6.53e-79	244

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042750	A0A6B7JI09	100.000	328	0	0	1	328	1	328	0.0	684

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1042750	TF	NAC

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1042750	Msa1079150	0.915629	4.690117e-85	-8.615850e-47
Msa1042750	Msa1079160	0.984301	3.642159e-160	-8.615850e-47
Msa1042750	Msa1169120	0.982353	7.102872e-155	-8.615850e-47

Showing 1 to 3 of 3 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042750	MtrunA17_Chr7g0263931	98.171	328	6	0	1	328	1	328	0.0	672
Msa1042750	MtrunA17_Chr2g0326361	52.234	291	126	5	7	286	10	298	1.94e-93	280
Msa1042750	MtrunA17_Chr2g0318101	63.128	179	59	1	11	182	15	193	9.98e-82	251
Msa1042750	MtrunA17_Chr7g0252971	50.562	267	101	7	8	243	5	271	2.34e-81	250
Msa1042750	MtrunA17_Chr4g0047841	64.045	178	45	2	10	168	14	191	3.24e-78	242
Msa1042750	MtrunA17_Chr4g0042561	62.234	188	61	3	10	195	8	187	3.85e-78	239
Msa1042750	MtrunA17_Chr5g0417791	66.871	163	52	1	9	171	1	161	3.22e-77	237
Msa1042750	MtrunA17_Chr3g0124761	64.198	162	54	2	7	168	3	160	2.06e-72	226
Msa1042750	MtrunA17_Chr2g0318081	62.130	169	58	3	2	170	7	169	8.96e-71	223
Msa1042750	MtrunA17_Chr8g0384721	49.573	234	103	5	9	235	5	230	3.42e-70	220

Showing 1 to 10 of 87 entries

Previous1 2 3 4 5…9Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042750	AT1G69490.1	66.463	164	53	1	7	170	5	166	6.64e-80	244
Msa1042750	AT1G61110.1	65.318	173	51	2	10	174	15	186	2.64e-78	242
Msa1042750	AT3G04070.2	62.921	178	58	3	1	172	2	177	2.27e-75	235
Msa1042750	AT3G15510.1	45.455	264	115	5	15	253	21	280	1.74e-74	234
Msa1042750	AT3G04070.1	59.278	194	55	4	1	172	2	193	8.94e-74	232
Msa1042750	AT1G01720.1	64.596	161	52	2	9	168	5	161	1.84e-71	223
Msa1042750	AT1G77450.1	46.275	255	119	5	7	257	6	246	4.33e-71	221
Msa1042750	AT4G27410.2	60.465	172	61	4	2	172	5	170	1.13e-69	219
Msa1042750	AT5G08790.1	62.577	163	57	2	7	168	3	162	2.13e-68	216
Msa1042750	AT3G15500.1	60.479	167	60	2	4	170	7	167	5.88e-68	216

Showing 1 to 10 of 147 entries

Previous1 2 3 4 5…15Next

Find 63 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTATTCTTACTTCATG+TGG	0.485318	7_1:-80987827	Msa1042750:CDS
AAAGCTCTTGTGTTCTATAA+GGG	0.461663	7_1:-80987782	Msa1042750:CDS
AACCCACATGAAGTAAGAAT+AGG	0.478829	7_1:+80987824	None:intergenic
AACCTATTCTTACTTCATGT+GGG	0.525385	7_1:-80987826	Msa1042750:CDS
AATCTTCCCAACTGCTTCTT+GGG	0.270345	7_1:+80987332	None:intergenic
AATGGTATTTCTTTACTCCA+AGG	0.574944	7_1:-80987925	Msa1042750:CDS
ACAATGAGTTCTTCATCAGA+CGG	0.625487	7_1:+80988170	None:intergenic
AGGGACAGAAAGTATCCCAA+AGG	0.681244	7_1:-80987905	Msa1042750:CDS
AGGTAAGGCTTTGTTTGGCG+AGG	0.637204	7_1:-80987951	Msa1042750:CDS
AGTGCTCTGCCTAATTCCAT+TGG	0.553997	7_1:-80987184	Msa1042750:CDS

Showing 1 to 10 of 63 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGGAATGTTCATTAAAGGAA+TGG	-	chr7_1:80987104-80987123	Msa1042750:CDS	30.0%
AATGGTATTTCTTTACTCCA+AGG	-	chr7_1:80987170-80987189	Msa1042750:CDS	30.0%
ATGGTATTTCTTTACTCCAA+GGG	-	chr7_1:80987171-80987190	Msa1042750:CDS	30.0%
AAACCTATTCTTACTTCATG+TGG	-	chr7_1:80987268-80987287	Msa1042750:CDS	30.0%
AACCTATTCTTACTTCATGT+GGG	-	chr7_1:80987269-80987288	Msa1042750:CDS	30.0%
AAAGCTCTTGTGTTCTATAA+GGG	-	chr7_1:80987313-80987332	Msa1042750:CDS	30.0%
ATCTCAAATTCCAATCATAG+TGG	-	chr7_1:80987400-80987419	Msa1042750:intron	30.0%
GCCAAAATATAAGGTAACAT+TGG	+	chr7_1:80987884-80987903	None:intergenic	30.0%
CTCTTAGAAGCCAAAATATA+AGG	+	chr7_1:80987893-80987912	None:intergenic	30.0%
AGTTTAAACAGAGAAGTTGA+TGG	-	chr7_1:80988103-80988122	Msa1042750:CDS	30.0%

Showing 1 to 10 of 184 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	80986871	80988246	80986871	ID=Msa1042750;Name=Msa1042750
chr7_1	mRNA	80986871	80988246	80986871	ID=Msa1042750-mRNA-1;Parent=Msa1042750;Name=Msa1042750-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0\|0\|1\|1\|1\|3\|0\|328
chr7_1	exon	80988075	80988246	80988075	ID=Msa1042750-mRNA-1:exon:22077;Parent=Msa1042750-mRNA-1
chr7_1	exon	80987685	80987971	80987685	ID=Msa1042750-mRNA-1:exon:22076;Parent=Msa1042750-mRNA-1
chr7_1	exon	80986871	80987398	80986871	ID=Msa1042750-mRNA-1:exon:22075;Parent=Msa1042750-mRNA-1
chr7_1	CDS	80988075	80988246	80988075	ID=Msa1042750-mRNA-1:cds;Parent=Msa1042750-mRNA-1
chr7_1	CDS	80987685	80987971	80987685	ID=Msa1042750-mRNA-1:cds;Parent=Msa1042750-mRNA-1
chr7_1	CDS	80986871	80987398	80986871	ID=Msa1042750-mRNA-1:cds;Parent=Msa1042750-mRNA-1

Gene Sequence

>Msa1042750

ATGGACAAAAATCCTCATTCAGAAATTCAACTTCCTCCTGGATTTAGATTCCACCCGTCTGATGAAGAACTCATTGTTCACTATCTACGAAACAAAGTGACTTCATCTCCTCTTCCTGCTTCATTCATAGCAGAAATAAATCTTTACAAGTACAATCCGTGGGAGCTTCCAAGTAAGGCTTTGTTTGGCGAGGAAGAATGGTATTTCTTTACTCCAAGGGACAGAAAGTATCCCAAAGGATTGAGGCCTAATAGAGCAGCTGGTGTAGGTTATTGGAAAGCAACTGGAACTGACAAACCTATTCTTACTTCATGTGGGTTGAAAAGCATTGGAGTGAAGAAAGCTCTTGTGTTCTATAAGGGACGTCCACCAAAGGGATCTAAAACTGAGTGGATCATGCATGAGTATAGGTTGCATGACTCGATGATCTCAAATTCCAATCATAGTGGCTCTATGAGACTGGATGAGTGGGTGCTATGCCGTGTTCGACAAAAAATGGGCAGCCCAAGAAGCAGTTGGGAAGATTCAAATGAACTTAGCTATGAATCAACTAGTCAATTTCAGCACATGCCTGTGAACTCTAATCCTGAACCAGTCCAAAACTATGTACAAAATGAATATCCAATGTTACCTTATATTTTGGCTTCTAAGAGTGCTCTGCCTAATTCCATTGGTATGACCTCAGACAATGTAAATATACAAGCTTCATCTTATGATGACAACTTAAACGTGATTGGAGCACAGTTCTTATCAGCTACAACTGAGGGATTGTTTAATAAACCACTGAAGAGAAAAGCTGTCGAAGATAATGTTGCCATGGACTTTTATGATGTCCTCAATAAAAGTTTAAACAGAGAAGTTGATGGTAGGAAGCAAAGTCTTGAAAAAGATTTAAGCAAAGGGTATAATTTCTACAGCTTTGATCAGTGGACTTCAATCATACAACCTCAAGAGCTTAATAACTTAACCTTCACTGGATATACATAA

Protein sequence

>Msa1042750

MDKNPHSEIQLPPGFRFHPSDEELIVHYLRNKVTSSPLPASFIAEINLYKYNPWELPSKALFGEEEWYFFTPRDRKYPKGLRPNRAAGVGYWKATGTDKPILTSCGLKSIGVKKALVFYKGRPPKGSKTEWIMHEYRLHDSMISNSNHSGSMRLDEWVLCRVRQKMGSPRSSWEDSNELSYESTSQFQHMPVNSNPEPVQNYVQNEYPMLPYILASKSALPNSIGMTSDNVNIQASSYDDNLNVIGAQFLSATTEGLFNKPLKRKAVEDNVAMDFYDVLNKSLNREVDGRKQSLEKDLSKGYNFYSFDQWTSIIQPQELNNLTFTGYT*