AlfalfaGEDB | Msa1079160

M. sativa cultivar zhongmu-4 / Msa1079160

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079160	QDX01725.1	100.000	328	0	0	1	328	1	328	0.0	684

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079160	sp\|O49255\|NAC29_ARATH	66.463	164	53	1	7	170	5	166	6.53e-79	244

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079160	A0A6B7JI09	100.000	328	0	0	1	328	1	328	0.0	684

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TFs/TRs:

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Gene ID	Type	Classification
Msa1079160	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1042750	Msa1079160	0.984301	3.642159e-160	-8.615850e-47
Msa1079150	Msa1079160	0.917623	4.234969e-86	-8.615850e-47
Msa1079160	Msa1169120	0.969864	9.414152e-131	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079160	MtrunA17_Chr7g0263931	98.171	328	6	0	1	328	1	328	0.0	672
Msa1079160	MtrunA17_Chr2g0326361	52.234	291	126	5	7	286	10	298	1.94e-93	280
Msa1079160	MtrunA17_Chr2g0318101	63.128	179	59	1	11	182	15	193	9.98e-82	251
Msa1079160	MtrunA17_Chr7g0252971	50.562	267	101	7	8	243	5	271	2.34e-81	250
Msa1079160	MtrunA17_Chr4g0047841	64.045	178	45	2	10	168	14	191	3.24e-78	242
Msa1079160	MtrunA17_Chr4g0042561	62.234	188	61	3	10	195	8	187	3.85e-78	239
Msa1079160	MtrunA17_Chr5g0417791	66.871	163	52	1	9	171	1	161	3.22e-77	237
Msa1079160	MtrunA17_Chr3g0124761	64.198	162	54	2	7	168	3	160	2.06e-72	226
Msa1079160	MtrunA17_Chr2g0318081	62.130	169	58	3	2	170	7	169	8.96e-71	223
Msa1079160	MtrunA17_Chr8g0384721	49.573	234	103	5	9	235	5	230	3.42e-70	220

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079160	AT1G69490.1	66.463	164	53	1	7	170	5	166	6.64e-80	244
Msa1079160	AT1G61110.1	65.318	173	51	2	10	174	15	186	2.64e-78	242
Msa1079160	AT3G04070.2	62.921	178	58	3	1	172	2	177	2.27e-75	235
Msa1079160	AT3G15510.1	45.455	264	115	5	15	253	21	280	1.74e-74	234
Msa1079160	AT3G04070.1	59.278	194	55	4	1	172	2	193	8.94e-74	232
Msa1079160	AT1G01720.1	64.596	161	52	2	9	168	5	161	1.84e-71	223
Msa1079160	AT1G77450.1	46.275	255	119	5	7	257	6	246	4.33e-71	221
Msa1079160	AT4G27410.2	60.465	172	61	4	2	172	5	170	1.13e-69	219
Msa1079160	AT5G08790.1	62.577	163	57	2	7	168	3	162	2.13e-68	216
Msa1079160	AT3G15500.1	60.479	167	60	2	4	170	7	167	5.88e-68	216

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Find 63 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTATTCTTACTTCATG+TGG	0.485318	7_2:+78195488	Msa1079160:CDS
AAAGCTCTTGTGTTCTATAA+GGG	0.461663	7_2:+78195533	Msa1079160:CDS
AACCCACATGAAGTAAGAAT+AGG	0.478829	7_2:-78195491	None:intergenic
AACCTATTCTTACTTCATGT+GGG	0.525385	7_2:+78195489	Msa1079160:CDS
AATCTTCCCAACTGCTTCTT+GGG	0.270345	7_2:-78195983	None:intergenic
AATGGTATTTCTTTACTCCA+AGG	0.574944	7_2:+78195390	Msa1079160:CDS
ACAATGAGTTCTTCATCAGA+CGG	0.625487	7_2:-78195145	None:intergenic
AGGGACAGAAAGTATCCCAA+AGG	0.681244	7_2:+78195410	Msa1079160:CDS
AGGTAAGGCTTTGTTTGGCG+AGG	0.637204	7_2:+78195364	Msa1079160:intron
AGTGCTCTGCCTAATTCCAT+TGG	0.553997	7_2:+78196131	Msa1079160:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGAATGTTCATTAAAGGAA+TGG	+	chr7_2:78195324-78195343	Msa1079160:intron	30.0%
AATGGTATTTCTTTACTCCA+AGG	+	chr7_2:78195390-78195409	Msa1079160:CDS	30.0%
ATGGTATTTCTTTACTCCAA+GGG	+	chr7_2:78195391-78195410	Msa1079160:CDS	30.0%
AAACCTATTCTTACTTCATG+TGG	+	chr7_2:78195488-78195507	Msa1079160:CDS	30.0%
AACCTATTCTTACTTCATGT+GGG	+	chr7_2:78195489-78195508	Msa1079160:CDS	30.0%
AAAGCTCTTGTGTTCTATAA+GGG	+	chr7_2:78195533-78195552	Msa1079160:CDS	30.0%
ATCTCAAATTCCAATCATAG+TGG	+	chr7_2:78195620-78195639	Msa1079160:CDS	30.0%
GCCAAAATATAAGGTAACAT+TGG	-	chr7_2:78196104-78196123	None:intergenic	30.0%
CTCTTAGAAGCCAAAATATA+AGG	-	chr7_2:78196113-78196132	None:intergenic	30.0%
AGTTTAAACAGAGAAGTTGA+TGG	+	chr7_2:78196323-78196342	Msa1079160:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	78195091	78196466	78195091	ID=Msa1079160;Name=Msa1079160
chr7_2	mRNA	78195091	78196466	78195091	ID=Msa1079160-mRNA-1;Parent=Msa1079160;Name=Msa1079160-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|3\|0\|328
chr7_2	exon	78195091	78195262	78195091	ID=Msa1079160-mRNA-1:exon:19441;Parent=Msa1079160-mRNA-1
chr7_2	exon	78195366	78195652	78195366	ID=Msa1079160-mRNA-1:exon:19442;Parent=Msa1079160-mRNA-1
chr7_2	exon	78195939	78196466	78195939	ID=Msa1079160-mRNA-1:exon:19443;Parent=Msa1079160-mRNA-1
chr7_2	CDS	78195091	78195262	78195091	ID=Msa1079160-mRNA-1:cds;Parent=Msa1079160-mRNA-1
chr7_2	CDS	78195366	78195652	78195366	ID=Msa1079160-mRNA-1:cds;Parent=Msa1079160-mRNA-1
chr7_2	CDS	78195939	78196466	78195939	ID=Msa1079160-mRNA-1:cds;Parent=Msa1079160-mRNA-1

Gene Sequence

>Msa1079160

ATGGACAAAAATCCTCATTCAGAAATTCAACTTCCTCCTGGATTTAGATTCCACCCGTCTGATGAAGAACTCATTGTTCACTATCTACGAAACAAAGTGACTTCATCTCCTCTTCCTGCTTCATTCATAGCAGAAATAAATCTTTACAAGTACAATCCGTGGGAGCTTCCAAGTAAGGCTTTGTTTGGCGAGGAAGAATGGTATTTCTTTACTCCAAGGGACAGAAAGTATCCCAAAGGATTGAGGCCTAATAGAGCAGCTGGTGTAGGTTATTGGAAAGCAACTGGAACTGACAAACCTATTCTTACTTCATGTGGGTTGAAAAGCATTGGAGTGAAGAAAGCTCTTGTGTTCTATAAGGGACGTCCACCAAAGGGATCTAAAACTGAGTGGATCATGCATGAGTATAGGTTGCATGACTCGATGATCTCAAATTCCAATCATAGTGGCTCTATGAGACTGGATGAGTGGGTGCTATGCCGTGTTCGACAAAAAATGGGCAGCCCAAGAAGCAGTTGGGAAGATTCAAATGAACTTAGCTATGAATCAACTAGTCAATTTCAGCACATGCCTGTGAACTCTAATCCTGAACCAGTCCAAAACTATGTACAAAATGAATATCCAATGTTACCTTATATTTTGGCTTCTAAGAGTGCTCTGCCTAATTCCATTGGTATGACCTCAGACAATGTAAATATACAAGCTTCATCTTATGATGACAACTTAAACGTGATTGGAGCACAGTTCTTATCAGCTACAACTGAGGGATTGTTTAATAAACCACTGAAGAGAAAAGCTGTCGAAGATAATGTTGCCATGGACTTTTATGATGTCCTCAATAAAAGTTTAAACAGAGAAGTTGATGGTAGGAAGCAAAGTCTTGAAAAAGATTTAAGCAAAGGGTATAATTTCTACAGCTTTGATCAGTGGACTTCAATCATACAACCTCAAGAGCTTAATAACTTAACCTTCACTGGATATACATAA

Protein sequence

>Msa1079160

MDKNPHSEIQLPPGFRFHPSDEELIVHYLRNKVTSSPLPASFIAEINLYKYNPWELPSKALFGEEEWYFFTPRDRKYPKGLRPNRAAGVGYWKATGTDKPILTSCGLKSIGVKKALVFYKGRPPKGSKTEWIMHEYRLHDSMISNSNHSGSMRLDEWVLCRVRQKMGSPRSSWEDSNELSYESTSQFQHMPVNSNPEPVQNYVQNEYPMLPYILASKSALPNSIGMTSDNVNIQASSYDDNLNVIGAQFLSATTEGLFNKPLKRKAVEDNVAMDFYDVLNKSLNREVDGRKQSLEKDLSKGYNFYSFDQWTSIIQPQELNNLTFTGYT*