AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1169120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169120 MtrunA17_Chr7g0263931 98.171 328 6 0 1 328 1 328 0.0 672
Msa1169120 MtrunA17_Chr2g0326361 52.234 291 126 5 7 286 10 298 1.94e-93 280
Msa1169120 MtrunA17_Chr2g0318101 63.128 179 59 1 11 182 15 193 9.98e-82 251
Msa1169120 MtrunA17_Chr7g0252971 50.562 267 101 7 8 243 5 271 2.34e-81 250
Msa1169120 MtrunA17_Chr4g0047841 64.045 178 45 2 10 168 14 191 3.24e-78 242
Msa1169120 MtrunA17_Chr4g0042561 62.234 188 61 3 10 195 8 187 3.85e-78 239
Msa1169120 MtrunA17_Chr5g0417791 66.871 163 52 1 9 171 1 161 3.22e-77 237
Msa1169120 MtrunA17_Chr3g0124761 64.198 162 54 2 7 168 3 160 2.06e-72 226
Msa1169120 MtrunA17_Chr2g0318081 62.130 169 58 3 2 170 7 169 8.96e-71 223
Msa1169120 MtrunA17_Chr8g0384721 49.573 234 103 5 9 235 5 230 3.42e-70 220
Msa1169120 MtrunA17_Chr8g0359921 61.677 167 60 3 2 168 5 167 2.13e-67 214
Msa1169120 MtrunA17_Chr3g0130731 56.790 162 66 2 6 167 2 159 7.78e-64 204
Msa1169120 MtrunA17_Chr3g0139331 45.249 221 105 3 1 211 1 215 2.63e-60 196
Msa1169120 MtrunA17_Chr4g0060931 55.152 165 70 3 8 172 14 174 7.48e-57 188
Msa1169120 MtrunA17_Chr6g0484441 55.063 158 63 2 8 165 2 151 3.38e-56 185
Msa1169120 MtrunA17_Chr6g0453451 54.878 164 70 2 2 165 11 170 3.53e-56 185
Msa1169120 MtrunA17_Chr1g0147421 53.012 166 71 2 1 165 17 176 6.24e-56 185
Msa1169120 MtrunA17_Chr2g0316971 56.329 158 67 1 8 165 20 175 1.63e-55 185
Msa1169120 MtrunA17_Chr7g0214071 54.777 157 62 2 6 162 10 157 3.59e-55 180
Msa1169120 MtrunA17_Chr5g0417001 53.125 160 71 2 13 168 16 175 4.57e-55 184
Msa1169120 MtrunA17_Chr3g0091921 56.329 158 65 3 8 165 13 166 9.98e-54 178
Msa1169120 MtrunA17_Chr6g0453131 51.515 165 70 3 11 168 15 176 2.28e-53 179
Msa1169120 MtrunA17_Chr8g0361731 50.595 168 73 4 8 168 12 176 2.94e-53 179
Msa1169120 MtrunA17_Chr6g0481091 41.935 217 105 5 7 220 2 200 1.94e-52 172
Msa1169120 MtrunA17_Chr7g0253011 51.497 167 77 3 1 165 7 171 4.60e-52 176
Msa1169120 MtrunA17_Chr2g0309331 39.823 226 119 5 8 226 7 222 3.71e-51 172
Msa1169120 MtrunA17_Chr4g0018391 40.000 240 119 6 10 244 6 225 4.31e-50 170
Msa1169120 MtrunA17_Chr2g0309891 49.686 159 73 3 9 165 4 157 1.22e-49 169
Msa1169120 MtrunA17_Chr2g0312321 51.572 159 62 4 8 162 8 155 2.91e-49 166
Msa1169120 MtrunA17_Chr5g0442771 47.701 174 84 5 1 168 9 181 2.92e-49 167
Msa1169120 MtrunA17_Chr5g0405211 49.068 161 71 3 8 165 5 157 3.64e-49 167
Msa1169120 MtrunA17_Chr4g0056541 49.057 159 70 3 10 165 6 156 3.92e-49 168
Msa1169120 MtrunA17_Chr5g0433781 50.314 159 71 4 9 165 4 156 4.49e-49 173
Msa1169120 MtrunA17_Chr3g0144271 51.534 163 75 3 2 163 14 173 4.94e-49 169
Msa1169120 MtrunA17_Chr6g0461661 51.299 154 73 2 9 162 16 167 5.50e-49 168
Msa1169120 MtrunA17_Chr3g0109821 49.686 159 73 4 9 165 4 157 1.84e-48 172
Msa1169120 MtrunA17_Chr5g0398971 48.428 159 71 4 11 165 7 158 2.19e-48 166
Msa1169120 MtrunA17_Chr8g0385991 48.447 161 78 3 10 167 13 171 2.71e-48 161
Msa1169120 MtrunA17_Chr4g0017921 50.633 158 66 3 11 165 8 156 6.97e-48 164
Msa1169120 MtrunA17_Chr8g0346001 46.951 164 77 3 10 165 14 175 8.74e-48 166
Msa1169120 MtrunA17_Chr8g0372121 46.154 182 82 5 11 185 6 178 2.17e-47 162
Msa1169120 MtrunA17_Chr1g0183741 47.742 155 73 1 11 165 10 156 3.03e-47 160
Msa1169120 MtrunA17_Chr4g0076731 49.383 162 75 2 6 167 49 203 3.17e-47 164
Msa1169120 MtrunA17_Chr7g0217721 47.701 174 78 3 3 165 11 182 4.02e-47 162
Msa1169120 MtrunA17_Chr2g0311651 40.191 209 108 5 13 204 24 232 9.17e-47 160
Msa1169120 MtrunA17_Chr7g0261411 48.684 152 70 1 11 162 10 153 1.85e-46 159
Msa1169120 MtrunA17_Chr2g0311661 42.697 178 92 3 13 180 23 200 1.16e-45 157
Msa1169120 MtrunA17_Chr1g0200561 46.584 161 75 3 8 165 16 168 1.54e-45 158
Msa1169120 MtrunA17_Chr4g0054791 43.979 191 91 5 11 190 6 191 5.28e-45 155
Msa1169120 MtrunA17_Chr5g0400461 37.262 263 130 8 11 247 6 259 7.55e-45 156
Msa1169120 MtrunA17_Chr7g0217711 50.345 145 70 1 3 147 11 153 3.16e-44 149
Msa1169120 MtrunA17_Chr3g0130101 39.303 201 97 6 13 199 9 198 9.70e-44 153
Msa1169120 MtrunA17_Chr4g0038751 45.238 168 82 2 2 168 6 164 9.26e-43 149
Msa1169120 MtrunA17_Chr3g0131911 47.500 160 78 3 10 165 13 170 5.39e-42 145
Msa1169120 MtrunA17_Chr3g0092671 43.005 193 97 6 13 201 7 190 8.99e-42 152
Msa1169120 MtrunA17_Chr5g0428991 38.247 251 132 8 10 251 24 260 2.59e-41 152
Msa1169120 MtrunA17_Chr1g0197361 45.625 160 75 5 13 168 10 161 4.71e-41 150
Msa1169120 MtrunA17_Chr1g0197351 46.061 165 81 4 11 169 42 204 1.74e-40 147
Msa1169120 MtrunA17_Chr3g0128151 43.750 192 96 5 11 200 22 203 3.08e-40 148
Msa1169120 MtrunA17_Chr1g0201021 43.312 157 81 3 13 167 21 171 8.42e-40 147
Msa1169120 MtrunA17_Chr8g0364791 41.071 168 90 4 10 174 5 166 1.64e-39 144
Msa1169120 MtrunA17_Chr8g0384201 38.424 203 101 8 10 195 5 200 1.32e-38 142
Msa1169120 MtrunA17_Chr3g0128111 39.474 190 96 4 14 201 45 217 5.35e-38 135
Msa1169120 MtrunA17_Chr8g0345671 41.718 163 77 6 5 162 6 155 8.97e-34 128
Msa1169120 MtrunA17_Chr4g0026141 39.691 194 102 7 11 196 5 191 9.82e-34 124
Msa1169120 MtrunA17_Chr4g0050701 39.490 157 85 2 11 165 11 159 6.68e-33 120
Msa1169120 MtrunA17_Chr7g0266701 38.690 168 95 4 11 171 4 170 2.74e-32 120
Msa1169120 MtrunA17_Chr3g0113001 55.660 106 44 2 60 165 14 116 6.07e-32 121
Msa1169120 MtrunA17_Chr8g0345691 39.744 156 81 5 10 162 11 156 6.32e-32 123
Msa1169120 MtrunA17_Chr2g0321741 41.615 161 73 5 43 195 24 171 7.53e-32 122
Msa1169120 MtrunA17_Chr8g0345711 37.654 162 86 6 11 160 12 170 1.29e-30 114
Msa1169120 MtrunA17_Chr2g0321631 42.169 166 82 7 12 168 5 165 3.65e-30 115
Msa1169120 MtrunA17_Chr8g0345731 43.066 137 71 5 11 142 24 158 1.87e-29 110
Msa1169120 MtrunA17_Chr8g0384351 39.623 159 70 5 7 165 6 138 4.80e-27 105
Msa1169120 MtrunA17_Chr3g0113031 54.348 92 40 1 74 165 3 92 5.77e-26 104
Msa1169120 MtrunA17_Chr8g0345721 36.364 165 70 5 14 146 38 199 8.93e-26 102
Msa1169120 MtrunA17_Chr8g0345741 38.583 127 72 4 22 145 2 125 4.72e-24 96.3
Msa1169120 MtrunA17_Chr7g0243371 50.000 86 37 1 64 149 17 96 1.27e-22 91.3
Msa1169120 MtrunA17_Chr8g0345701 36.486 148 74 5 7 137 3 147 2.40e-22 92.0
Msa1169120 MtrunA17_Chr3g0130321 34.524 168 86 8 9 164 5 160 3.75e-22 92.4
Msa1169120 MtrunA17_Chr7g0274971 32.911 158 89 6 17 166 11 159 6.39e-17 78.2
Msa1169120 MtrunA17_Chr7g0251661 30.935 139 87 5 7 140 6 140 7.24e-17 76.6
Msa1169120 MtrunA17_Chr1g0168571 34.615 156 81 7 19 164 13 157 1.05e-15 76.6
Msa1169120 MtrunA17_Chr7g0251651 32.308 130 82 4 9 136 16 141 4.74e-15 72.8
Msa1169120 MtrunA17_Chr7g0251671 30.534 131 85 4 8 136 7 133 1.40e-13 67.8
Msa1169120 MtrunA17_Chr8g0389661 31.373 153 79 6 9 138 45 194 4.80e-11 63.5
Msa1169120 MtrunA17_Chr3g0113011 47.368 57 30 0 3 59 11 67 6.71e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169120 AT1G69490.1 66.463 164 53 1 7 170 5 166 6.64e-80 244
Msa1169120 AT1G61110.1 65.318 173 51 2 10 174 15 186 2.64e-78 242
Msa1169120 AT3G04070.2 62.921 178 58 3 1 172 2 177 2.27e-75 235
Msa1169120 AT3G15510.1 45.455 264 115 5 15 253 21 280 1.74e-74 234
Msa1169120 AT3G04070.1 59.278 194 55 4 1 172 2 193 8.94e-74 232
Msa1169120 AT1G01720.1 64.596 161 52 2 9 168 5 161 1.84e-71 223
Msa1169120 AT1G77450.1 46.275 255 119 5 7 257 6 246 4.33e-71 221
Msa1169120 AT4G27410.2 60.465 172 61 4 2 172 5 170 1.13e-69 219
Msa1169120 AT5G08790.1 62.577 163 57 2 7 168 3 162 2.13e-68 216
Msa1169120 AT3G15500.1 60.479 167 60 2 4 170 7 167 5.88e-68 216
Msa1169120 AT1G52890.1 59.172 169 63 2 2 170 5 167 1.29e-67 214
Msa1169120 AT5G63790.1 60.123 163 61 2 7 168 46 205 3.62e-67 213
Msa1169120 AT5G63790.2 60.123 163 61 2 7 168 56 215 5.57e-67 213
Msa1169120 AT1G52880.1 61.963 163 56 2 15 171 21 183 8.75e-66 210
Msa1169120 AT4G27410.3 55.026 189 61 5 2 172 5 187 3.36e-65 208
Msa1169120 AT5G39610.1 58.861 158 59 3 9 165 18 170 8.82e-58 188
Msa1169120 AT2G24430.2 56.329 158 64 2 8 165 13 165 1.51e-57 189
Msa1169120 AT2G24430.1 56.329 158 64 2 8 165 13 165 1.51e-57 189
Msa1169120 AT5G07680.1 56.364 165 68 3 3 167 9 169 2.21e-57 189
Msa1169120 AT1G76420.1 50.857 175 81 2 7 181 18 187 3.45e-57 188
Msa1169120 AT5G07680.2 57.862 159 63 3 9 167 1 155 3.83e-57 187
Msa1169120 AT3G15170.1 58.125 160 65 2 8 167 17 174 5.82e-57 187
Msa1169120 AT5G61430.1 57.595 158 63 3 8 165 13 166 8.47e-57 187
Msa1169120 AT5G53950.1 56.604 159 59 2 11 165 17 169 9.60e-56 186
Msa1169120 AT3G18400.1 55.063 158 64 2 8 165 2 152 1.23e-55 184
Msa1169120 AT5G13180.1 56.494 154 59 2 9 162 12 157 2.31e-55 181
Msa1169120 AT3G29035.1 58.710 155 60 3 8 162 21 171 5.67e-55 182
Msa1169120 AT5G18270.2 57.325 157 64 3 9 165 19 172 1.08e-54 182
Msa1169120 AT1G26870.1 48.333 180 72 2 2 168 7 178 1.26e-54 184
Msa1169120 AT5G39820.1 45.813 203 82 6 13 187 22 224 3.94e-54 180
Msa1169120 AT3G04060.1 50.820 183 85 5 9 190 18 196 5.11e-54 180
Msa1169120 AT5G18270.1 56.051 157 66 3 9 165 19 172 1.06e-53 179
Msa1169120 AT2G33480.1 55.769 156 56 5 9 162 13 157 1.16e-51 172
Msa1169120 AT2G33480.2 55.128 156 55 4 9 162 13 155 1.65e-51 171
Msa1169120 AT1G12260.2 50.943 159 67 3 10 165 6 156 6.22e-51 172
Msa1169120 AT1G12260.1 50.943 159 67 3 10 165 6 156 1.35e-50 173
Msa1169120 AT3G12977.1 48.101 158 77 2 8 165 15 167 2.00e-50 169
Msa1169120 AT3G03200.1 50.625 160 72 3 9 166 4 158 2.45e-50 174
Msa1169120 AT3G17730.1 48.447 161 75 4 9 167 4 158 5.43e-50 167
Msa1169120 AT1G79580.3 50.000 162 70 3 7 165 13 166 2.01e-49 169
Msa1169120 AT1G79580.5 50.000 162 70 3 7 165 13 166 2.01e-49 169
Msa1169120 AT1G79580.4 50.000 162 70 3 7 165 13 166 2.01e-49 169
Msa1169120 AT1G79580.2 50.000 162 70 3 7 165 13 166 2.01e-49 169
Msa1169120 AT1G79580.1 50.000 162 70 3 7 165 13 166 2.01e-49 169
Msa1169120 AT2G43000.1 45.349 172 88 3 1 171 7 173 3.11e-49 166
Msa1169120 AT1G65910.1 49.057 159 73 3 9 165 4 156 3.36e-49 174
Msa1169120 AT5G17260.1 50.625 160 72 4 9 166 4 158 4.15e-49 171
Msa1169120 AT1G56010.2 49.686 159 76 3 8 165 16 171 4.64e-49 167
Msa1169120 AT2G18060.3 38.589 241 125 8 5 238 3 227 6.78e-49 167
Msa1169120 AT2G18060.1 38.589 241 125 8 5 238 3 227 6.78e-49 167
Msa1169120 AT1G62700.1 47.059 187 75 6 10 181 6 183 9.90e-49 168
Msa1169120 AT1G62700.2 47.059 187 75 6 10 181 6 183 9.90e-49 168
Msa1169120 AT5G62380.2 35.870 276 138 9 10 258 6 269 1.89e-48 166
Msa1169120 AT5G62380.1 35.870 276 138 9 10 258 6 269 1.89e-48 166
Msa1169120 AT4G10350.1 46.809 188 89 4 11 195 9 188 2.31e-48 166
Msa1169120 AT4G36160.2 44.279 201 95 7 11 206 14 202 5.11e-48 166
Msa1169120 AT4G36160.1 44.279 201 95 7 11 206 10 198 5.58e-48 166
Msa1169120 AT4G36160.3 44.279 201 95 7 11 206 10 198 5.58e-48 166
Msa1169120 AT1G71930.2 48.101 158 71 3 11 165 9 158 5.71e-48 164
Msa1169120 AT1G71930.1 48.101 158 71 3 11 165 9 158 5.71e-48 164
Msa1169120 AT5G46590.1 52.532 158 67 4 11 165 6 158 6.73e-48 163
Msa1169120 AT1G32770.1 47.879 165 75 4 10 165 15 177 1.05e-47 164
Msa1169120 AT2G02450.1 50.323 155 70 2 13 167 53 200 4.39e-47 163
Msa1169120 AT2G02450.2 50.323 155 70 2 13 167 53 200 5.08e-47 164
Msa1169120 AT2G46770.1 47.619 168 74 5 10 165 15 180 1.66e-46 161
Msa1169120 AT1G33280.1 49.367 158 68 3 11 165 8 156 1.80e-46 159
Msa1169120 AT5G66300.1 42.564 195 97 5 11 198 12 198 4.97e-46 158
Msa1169120 AT3G61910.1 42.938 177 87 3 1 165 1 175 7.62e-46 159
Msa1169120 AT5G46590.2 53.571 140 62 2 11 148 6 144 1.44e-45 156
Msa1169120 AT4G17980.2 48.408 157 77 2 11 165 6 160 3.96e-45 155
Msa1169120 AT4G17980.1 48.408 157 77 2 11 165 6 160 4.52e-45 155
Msa1169120 AT1G33060.1 42.784 194 101 4 11 200 24 211 7.76e-45 162
Msa1169120 AT1G33060.2 42.784 194 101 4 11 200 24 211 8.31e-45 162
Msa1169120 AT3G10500.1 46.341 164 80 3 7 168 5 162 9.19e-45 160
Msa1169120 AT3G10480.1 47.305 167 79 4 7 169 23 184 9.85e-44 156
Msa1169120 AT3G10480.2 47.904 167 77 5 7 169 23 183 3.13e-43 154
Msa1169120 AT4G28530.1 45.930 172 69 3 10 165 9 172 3.29e-43 152
Msa1169120 AT2G17040.1 38.197 233 123 8 8 234 4 221 4.97e-43 150
Msa1169120 AT3G10490.1 46.012 163 79 4 11 169 27 184 7.25e-43 148
Msa1169120 AT5G04410.1 34.317 271 157 6 7 263 5 268 1.59e-42 155
Msa1169120 AT1G54330.1 47.500 160 71 4 9 165 4 153 1.69e-42 149
Msa1169120 AT5G09330.5 41.176 170 91 4 8 174 3 166 6.34e-42 152
Msa1169120 AT5G09330.2 41.176 170 91 4 8 174 3 166 6.34e-42 152
Msa1169120 AT5G09330.4 41.176 170 91 4 8 174 3 166 6.34e-42 152
Msa1169120 AT5G09330.3 41.176 170 91 4 8 174 3 166 6.34e-42 152
Msa1169120 AT5G09330.1 41.176 170 91 4 8 174 3 166 6.34e-42 152
Msa1169120 AT1G32510.1 46.012 163 76 4 11 165 6 164 8.61e-42 147
Msa1169120 AT4G35580.3 45.161 186 83 5 11 185 9 186 1.56e-41 152
Msa1169120 AT4G35580.2 45.161 186 83 5 11 185 9 186 1.60e-41 151
Msa1169120 AT4G35580.1 45.161 186 83 5 11 185 9 186 1.71e-41 151
Msa1169120 AT3G10490.2 46.012 163 79 4 11 169 27 184 2.29e-41 150
Msa1169120 AT1G34180.3 36.946 203 112 5 13 212 18 207 2.72e-41 149
Msa1169120 AT3G12910.1 42.458 179 91 5 13 180 23 200 3.90e-41 145
Msa1169120 AT1G34180.1 45.324 139 72 2 13 149 18 154 1.91e-40 149
Msa1169120 AT2G27300.1 43.871 155 73 3 11 164 14 155 2.55e-40 144
Msa1169120 AT5G24590.2 47.771 157 75 4 11 165 13 164 6.56e-40 145
Msa1169120 AT5G64060.1 41.718 163 86 4 11 170 6 162 8.04e-40 144
Msa1169120 AT1G34190.1 47.692 130 64 2 13 140 18 145 1.00e-39 147
Msa1169120 AT3G49530.2 44.379 169 85 4 1 165 1 164 1.08e-39 144
Msa1169120 AT3G10480.3 40.500 200 77 5 7 169 23 217 1.11e-39 146
Msa1169120 AT3G49530.1 44.379 169 85 4 1 165 1 164 1.72e-39 145
Msa1169120 AT1G34180.4 35.349 215 111 5 13 212 18 219 8.52e-39 143
Msa1169120 AT1G34180.2 42.384 151 71 2 13 149 18 166 5.46e-38 142
Msa1169120 AT3G44290.2 43.137 153 73 4 13 164 16 155 1.28e-37 134
Msa1169120 AT1G32870.2 46.250 160 78 4 11 168 10 163 1.58e-37 140
Msa1169120 AT1G32870.1 46.250 160 78 4 11 168 10 163 2.16e-37 140
Msa1169120 AT1G32870.3 46.250 160 78 4 11 168 46 199 3.10e-37 140
Msa1169120 AT3G44290.1 43.137 153 73 4 13 164 16 155 4.11e-37 136
Msa1169120 AT5G22290.1 38.587 184 90 4 13 185 23 194 3.38e-36 134
Msa1169120 AT5G04395.1 42.282 149 72 2 4 138 21 169 6.55e-34 123
Msa1169120 AT5G61430.2 58.491 106 40 3 60 165 2 103 1.04e-33 125
Msa1169120 AT5G64530.1 39.560 182 87 4 9 180 1 169 1.63e-33 122
Msa1169120 AT3G12977.2 51.887 106 46 2 60 165 14 114 6.89e-33 122
Msa1169120 AT1G56010.1 53.774 106 46 2 60 165 2 104 8.81e-32 120
Msa1169120 AT5G64530.2 43.939 132 62 2 9 140 1 120 1.10e-31 116
Msa1169120 AT4G10350.2 49.242 132 59 3 64 195 18 141 1.37e-30 117
Msa1169120 AT5G22380.1 39.634 164 90 4 14 171 8 168 1.53e-30 116
Msa1169120 AT3G44350.2 38.235 170 90 6 10 171 4 166 2.39e-28 110
Msa1169120 AT4G01520.1 35.417 192 107 7 12 198 5 184 6.02e-28 110
Msa1169120 AT4G01550.1 44.961 129 67 3 14 138 7 135 8.06e-28 113
Msa1169120 AT2G33480.3 54.455 101 36 4 64 162 8 100 2.14e-27 107
Msa1169120 AT4G28530.2 44.961 129 55 2 10 122 9 137 2.47e-27 109
Msa1169120 AT3G04420.2 41.085 129 70 3 12 136 4 130 1.18e-26 107
Msa1169120 AT3G44350.1 40.288 139 73 4 10 141 4 139 1.51e-26 103
Msa1169120 AT3G04420.1 41.085 129 70 3 12 136 4 130 2.24e-26 107
Msa1169120 AT4G01540.2 35.263 190 106 7 14 198 7 184 5.56e-26 107
Msa1169120 AT4G01540.3 35.263 190 106 7 14 198 7 184 5.96e-26 107
Msa1169120 AT4G01540.4 35.263 190 106 7 14 198 7 184 7.07e-26 106
Msa1169120 AT4G01540.1 35.263 190 106 7 14 198 7 184 7.48e-26 107
Msa1169120 AT5G14000.1 34.031 191 113 6 9 197 13 192 9.50e-25 99.8
Msa1169120 AT1G02230.1 40.769 130 69 5 12 136 4 130 1.70e-24 102
Msa1169120 AT2G43000.2 43.878 98 50 2 73 170 2 94 7.09e-22 92.0
Msa1169120 AT1G02220.1 37.879 132 73 4 9 136 1 127 7.14e-22 95.5
Msa1169120 AT5G14000.2 37.879 132 76 4 9 138 13 140 1.12e-21 90.1
Msa1169120 AT1G02250.1 33.962 159 89 5 12 165 4 151 3.21e-21 93.2
Msa1169120 AT1G01010.1 34.969 163 83 7 14 165 6 156 4.12e-21 93.6
Msa1169120 AT2G18060.2 33.766 154 82 7 89 238 2 139 2.06e-16 78.6
Msa1169120 AT3G56530.1 30.435 161 95 6 8 162 49 198 2.54e-16 79.0
Msa1169120 AT3G10490.4 46.591 88 40 3 84 169 2 84 5.24e-16 78.2
Msa1169120 AT3G10490.3 46.591 88 40 3 84 169 2 84 5.24e-16 78.2
Msa1169120 AT3G55210.1 31.737 167 88 6 11 162 11 166 9.37e-16 76.6
Msa1169120 AT5G50820.1 32.877 146 82 6 9 149 15 149 3.65e-15 73.2
Msa1169120 AT3G04430.1 36.090 133 71 5 17 137 6 136 2.47e-13 68.2
Msa1169120 AT1G28470.1 35.135 148 75 8 11 141 77 220 2.75e-13 70.1
Msa1169120 AT5G22290.2 38.318 107 44 3 89 185 1 95 7.73e-13 67.8
Msa1169120 AT4G29230.1 30.247 162 86 6 1 138 38 196 1.77e-11 65.5
Msa1169120 AT4G29230.3 30.247 162 86 6 1 138 38 196 3.39e-11 64.3

Find 63 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATGTTACCTTATATTT+TGG 0.117587 7_4:+62066235 Msa1169120:CDS
AATCTTCCCAACTGCTTCTT+GGG 0.270345 7_4:-62066118 None:intergenic
GAATCTTCCCAACTGCTTCT+TGG 0.275408 7_4:-62066119 None:intergenic
GAAAGCTCTTGTGTTCTATA+AGG 0.276233 7_4:+62065667 Msa1169120:CDS
GAGCAGCTGGTGTAGGTTAT+TGG 0.281575 7_4:+62065582 Msa1169120:CDS
TCTATTAGGCCTCAATCCTT+TGG 0.292374 7_4:-62065561 None:intergenic
TTGGGATACTTTCTGTCCCT+TGG 0.321556 7_4:-62065542 None:intergenic
CTCTTAGAAGCCAAAATATA+AGG 0.363775 7_4:-62066245 None:intergenic
GATGACAACTTAAACGTGAT+TGG 0.377864 7_4:+62066329 Msa1169120:CDS
TTAACAGGTAAGGCTTTGTT+TGG 0.387446 7_4:+62065494 Msa1169120:intron
CTTAATAACTTAACCTTCAC+TGG 0.394784 7_4:+62066569 Msa1169120:CDS
CTATTAGGCCTCAATCCTTT+GGG 0.399520 7_4:-62065560 None:intergenic
CCTACACCAGCTGCTCTATT+AGG 0.409247 7_4:-62065575 None:intergenic
AGTTTAAACAGAGAAGTTGA+TGG 0.418602 7_4:+62066458 Msa1169120:CDS
TCTCATAGAGCCACTATGAT+TGG 0.425837 7_4:-62065765 None:intergenic
TCAGAAATTCAACTTCCTCC+TGG 0.429845 7_4:+62065244 Msa1169120:CDS
CTTTGTTTGGCGAGGAAGAA+TGG 0.442307 7_4:+62065507 Msa1169120:CDS
GGAAGTTGAATTTCTGAATG+AGG 0.450490 7_4:-62065238 None:intergenic
GTAGGTTATTGGAAAGCAAC+TGG 0.460130 7_4:+62065593 Msa1169120:CDS
AAAGCTCTTGTGTTCTATAA+GGG 0.461663 7_4:+62065668 Msa1169120:CDS
AACCCACATGAAGTAAGAAT+AGG 0.478829 7_4:-62065626 None:intergenic
TTTGCTTCAGCTGGATGAGT+GGG 0.481009 7_4:+62066064 Msa1169120:intron
AAACCTATTCTTACTTCATG+TGG 0.485318 7_4:+62065623 Msa1169120:CDS
GAGGTCATACCAATGGAATT+AGG 0.485329 7_4:-62066275 None:intergenic
TCATGTGGGTTGAAAAGCAT+TGG 0.491457 7_4:+62065638 Msa1169120:CDS
ATTTCTGCTATGAATGAAGC+AGG 0.501170 7_4:-62065340 None:intergenic
TTGAGGCCTAATAGAGCAGC+TGG 0.514886 7_4:+62065569 Msa1169120:CDS
GCCAAAATATAAGGTAACAT+TGG 0.517221 7_4:-62066236 None:intergenic
GTTAAGTTATTAAGCTCTTG+AGG 0.518782 7_4:-62066560 None:intergenic
AACCTATTCTTACTTCATGT+GGG 0.525385 7_4:+62065624 Msa1169120:CDS
TAAACAGAGAAGTTGATGGT+AGG 0.527609 7_4:+62066462 Msa1169120:CDS
GGGCAGCCCAAGAAGCAGTT+GGG 0.538362 7_4:+62066112 Msa1169120:CDS
ATTTCTACAGCTTTGATCAG+TGG 0.541984 7_4:+62066522 Msa1169120:CDS
ATGGTATTTCTTTACTCCAA+GGG 0.547047 7_4:+62065526 Msa1169120:CDS
GCTATGAATGAAGCAGGAAG+AGG 0.549644 7_4:-62065334 None:intergenic
ATCTCAAATTCCAATCATAG+TGG 0.551979 7_4:+62065755 Msa1169120:CDS
AGTGCTCTGCCTAATTCCAT+TGG 0.553997 7_4:+62066266 Msa1169120:CDS
TGGGCAGCCCAAGAAGCAGT+TGG 0.555345 7_4:+62066111 Msa1169120:CDS
TTCTTATCAGCTACAACTGA+GGG 0.556835 7_4:+62066359 Msa1169120:CDS
GACGGGTGGAATCTAAATCC+AGG 0.557638 7_4:-62065262 None:intergenic
GGTTCAGGATTAGAGTTCAC+AGG 0.560631 7_4:-62066185 None:intergenic
TATAAGGGACGTCCACCAAA+GGG 0.568110 7_4:+62065683 Msa1169120:CDS
AGTGGATCATGCATGAGTAT+AGG 0.571374 7_4:+62065717 Msa1169120:CDS
CCTAATAGAGCAGCTGGTGT+AGG 0.572729 7_4:+62065575 Msa1169120:CDS
GACAGACTTGGAAGCTCCCA+CGG 0.573638 7_4:-62065382 None:intergenic
AATGGTATTTCTTTACTCCA+AGG 0.574944 7_4:+62065525 Msa1169120:CDS
GAAAGTATCCCAAAGGATTG+AGG 0.576087 7_4:+62065552 Msa1169120:CDS
TTGTATATTTACATTGTCTG+AGG 0.581816 7_4:-62066294 None:intergenic
TACTTATGTATATCCAGTGA+AGG 0.582452 7_4:-62066582 None:intergenic
ATCTTTACAAGTACAATCCG+TGG 0.586507 7_4:+62065365 Msa1169120:CDS
GAGGACATCATAAAAGTCCA+TGG 0.590571 7_4:-62066429 None:intergenic
CAATGAGTTCTTCATCAGAC+GGG 0.595160 7_4:-62065279 None:intergenic
ATTGTCTGAGGTCATACCAA+TGG 0.597069 7_4:-62066282 None:intergenic
GTTCTTATCAGCTACAACTG+AGG 0.598360 7_4:+62066358 Msa1169120:CDS
CTATAAGGGACGTCCACCAA+AGG 0.603342 7_4:+62065682 Msa1169120:CDS
ACAATGAGTTCTTCATCAGA+CGG 0.625487 7_4:-62065280 None:intergenic
TCTTTACAAGTACAATCCGT+GGG 0.631781 7_4:+62065366 Msa1169120:CDS
AGGTAAGGCTTTGTTTGGCG+AGG 0.637204 7_4:+62065499 Msa1169120:intron
TGAGTTCTTCATCAGACGGG+TGG 0.640154 7_4:-62065276 None:intergenic
TGTCGAAGATAATGTTGCCA+TGG 0.658610 7_4:+62066412 Msa1169120:CDS
CAAAGGGATCTAAAACTGAG+TGG 0.678896 7_4:+62065699 Msa1169120:CDS
AGGGACAGAAAGTATCCCAA+AGG 0.681244 7_4:+62065545 Msa1169120:CDS
GGGTGGAATCTAAATCCAGG+AGG 0.760114 7_4:-62065259 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCATTTTTATTATTTTGA+AGG + chr7_4:62065439-62065458 Msa1169120:intron 10.0%
!!! TTTCATTTTTATTATTTTGA+AGG + chr7_4:62065439-62065458 Msa1169120:intron 10.0%
!!! TAGTTACATTTAATTTCTTT+TGG - chr7_4:62065889-62065908 None:intergenic 15.0%
!!! ATATTTTGTTGTTTTTAAAC+TGG + chr7_4:62065990-62066009 Msa1169120:intron 15.0%
!!! TAGTTACATTTAATTTCTTT+TGG - chr7_4:62065889-62065908 None:intergenic 15.0%
!!! ATATTTTGTTGTTTTTAAAC+TGG + chr7_4:62065990-62066009 Msa1169120:intron 15.0%
!!! ATTCATTTTGTACATAGTTT+TGG - chr7_4:62066214-62066233 None:intergenic 20.0%
!! TTGAAAAAGATTTAAGCAAA+GGG + chr7_4:62066495-62066514 Msa1169120:CDS 20.0%
!!! ATTCATTTTGTACATAGTTT+TGG - chr7_4:62066214-62066233 None:intergenic 20.0%
!! TTGAAAAAGATTTAAGCAAA+GGG + chr7_4:62066495-62066514 Msa1169120:CDS 20.0%
! TTTGAAGGAATGTTCATTAA+AGG + chr7_4:62065454-62065473 Msa1169120:intron 25.0%
! AAGATGAAAAATTGAACTCA+TGG - chr7_4:62065802-62065821 None:intergenic 25.0%
! GTACTAAATCTTCAGTTTAA+AGG - chr7_4:62065957-62065976 None:intergenic 25.0%
!! GGTATGTTAATATGAAGTTT+TGG + chr7_4:62066011-62066030 Msa1169120:intron 25.0%
!! TCCAATGTTACCTTATATTT+TGG + chr7_4:62066235-62066254 Msa1169120:CDS 25.0%
! TTGTATATTTACATTGTCTG+AGG - chr7_4:62066297-62066316 None:intergenic 25.0%
!! CTCTGTTTAAACTTTTATTG+AGG - chr7_4:62066451-62066470 None:intergenic 25.0%
! CTTGAAAAAGATTTAAGCAA+AGG + chr7_4:62066494-62066513 Msa1169120:CDS 25.0%
! TTTGAAGGAATGTTCATTAA+AGG + chr7_4:62065454-62065473 Msa1169120:intron 25.0%
! AAGATGAAAAATTGAACTCA+TGG - chr7_4:62065802-62065821 None:intergenic 25.0%
! GTACTAAATCTTCAGTTTAA+AGG - chr7_4:62065957-62065976 None:intergenic 25.0%
!! GGTATGTTAATATGAAGTTT+TGG + chr7_4:62066011-62066030 Msa1169120:intron 25.0%
!! TCCAATGTTACCTTATATTT+TGG + chr7_4:62066235-62066254 Msa1169120:CDS 25.0%
! TTGTATATTTACATTGTCTG+AGG - chr7_4:62066297-62066316 None:intergenic 25.0%
!! CTCTGTTTAAACTTTTATTG+AGG - chr7_4:62066451-62066470 None:intergenic 25.0%
! CTTGAAAAAGATTTAAGCAA+AGG + chr7_4:62066494-62066513 Msa1169120:CDS 25.0%
AGGAATGTTCATTAAAGGAA+TGG + chr7_4:62065459-62065478 Msa1169120:intron 30.0%
!! TGGAAGCTTTTCATTTTAAC+AGG + chr7_4:62065479-62065498 Msa1169120:intron 30.0%
!! GCTTTTCATTTTAACAGGTA+AGG + chr7_4:62065484-62065503 Msa1169120:intron 30.0%
AATGGTATTTCTTTACTCCA+AGG + chr7_4:62065525-62065544 Msa1169120:CDS 30.0%
ATGGTATTTCTTTACTCCAA+GGG + chr7_4:62065526-62065545 Msa1169120:CDS 30.0%
AAACCTATTCTTACTTCATG+TGG + chr7_4:62065623-62065642 Msa1169120:CDS 30.0%
AACCTATTCTTACTTCATGT+GGG + chr7_4:62065624-62065643 Msa1169120:CDS 30.0%
AAAGCTCTTGTGTTCTATAA+GGG + chr7_4:62065668-62065687 Msa1169120:CDS 30.0%
ATCTCAAATTCCAATCATAG+TGG + chr7_4:62065755-62065774 Msa1169120:CDS 30.0%
!!! TTTTGTACATAGTTTTGGAC+TGG - chr7_4:62066209-62066228 None:intergenic 30.0%
GCCAAAATATAAGGTAACAT+TGG - chr7_4:62066239-62066258 None:intergenic 30.0%
CTCTTAGAAGCCAAAATATA+AGG - chr7_4:62066248-62066267 None:intergenic 30.0%
AGTTTAAACAGAGAAGTTGA+TGG + chr7_4:62066458-62066477 Msa1169120:CDS 30.0%
GTTAAGTTATTAAGCTCTTG+AGG - chr7_4:62066563-62066582 None:intergenic 30.0%
CTTAATAACTTAACCTTCAC+TGG + chr7_4:62066569-62066588 Msa1169120:CDS 30.0%
AGGAATGTTCATTAAAGGAA+TGG + chr7_4:62065459-62065478 Msa1169120:intron 30.0%
!! TGGAAGCTTTTCATTTTAAC+AGG + chr7_4:62065479-62065498 Msa1169120:intron 30.0%
!! GCTTTTCATTTTAACAGGTA+AGG + chr7_4:62065484-62065503 Msa1169120:intron 30.0%
AATGGTATTTCTTTACTCCA+AGG + chr7_4:62065525-62065544 Msa1169120:CDS 30.0%
ATGGTATTTCTTTACTCCAA+GGG + chr7_4:62065526-62065545 Msa1169120:CDS 30.0%
AAACCTATTCTTACTTCATG+TGG + chr7_4:62065623-62065642 Msa1169120:CDS 30.0%
AACCTATTCTTACTTCATGT+GGG + chr7_4:62065624-62065643 Msa1169120:CDS 30.0%
AAAGCTCTTGTGTTCTATAA+GGG + chr7_4:62065668-62065687 Msa1169120:CDS 30.0%
ATCTCAAATTCCAATCATAG+TGG + chr7_4:62065755-62065774 Msa1169120:CDS 30.0%
!!! TTTTGTACATAGTTTTGGAC+TGG - chr7_4:62066209-62066228 None:intergenic 30.0%
GCCAAAATATAAGGTAACAT+TGG - chr7_4:62066239-62066258 None:intergenic 30.0%
CTCTTAGAAGCCAAAATATA+AGG - chr7_4:62066248-62066267 None:intergenic 30.0%
AGTTTAAACAGAGAAGTTGA+TGG + chr7_4:62066458-62066477 Msa1169120:CDS 30.0%
GTTAAGTTATTAAGCTCTTG+AGG - chr7_4:62066563-62066582 None:intergenic 30.0%
CTTAATAACTTAACCTTCAC+TGG + chr7_4:62066569-62066588 Msa1169120:CDS 30.0%
GGAAGTTGAATTTCTGAATG+AGG - chr7_4:62065241-62065260 None:intergenic 35.0%
ACAATGAGTTCTTCATCAGA+CGG - chr7_4:62065283-62065302 None:intergenic 35.0%
ATTTCTGCTATGAATGAAGC+AGG - chr7_4:62065343-62065362 None:intergenic 35.0%
ATCTTTACAAGTACAATCCG+TGG + chr7_4:62065365-62065384 Msa1169120:CDS 35.0%
TCTTTACAAGTACAATCCGT+GGG + chr7_4:62065366-62065385 Msa1169120:CDS 35.0%
GAAGTTGTTAAAGACAGACT+TGG - chr7_4:62065397-62065416 None:intergenic 35.0%
!! TTAACAGGTAAGGCTTTGTT+TGG + chr7_4:62065494-62065513 Msa1169120:intron 35.0%
AACCCACATGAAGTAAGAAT+AGG - chr7_4:62065629-62065648 None:intergenic 35.0%
GAAAGCTCTTGTGTTCTATA+AGG + chr7_4:62065667-62065686 Msa1169120:CDS 35.0%
GATGACAACTTAAACGTGAT+TGG + chr7_4:62066329-62066348 Msa1169120:CDS 35.0%
TTCTTATCAGCTACAACTGA+GGG + chr7_4:62066359-62066378 Msa1169120:CDS 35.0%
!! TAAACAGAGAAGTTGATGGT+AGG + chr7_4:62066462-62066481 Msa1169120:CDS 35.0%
! ATTTCTACAGCTTTGATCAG+TGG + chr7_4:62066522-62066541 Msa1169120:CDS 35.0%
GGAAGTTGAATTTCTGAATG+AGG - chr7_4:62065241-62065260 None:intergenic 35.0%
ACAATGAGTTCTTCATCAGA+CGG - chr7_4:62065283-62065302 None:intergenic 35.0%
ATTTCTGCTATGAATGAAGC+AGG - chr7_4:62065343-62065362 None:intergenic 35.0%
ATCTTTACAAGTACAATCCG+TGG + chr7_4:62065365-62065384 Msa1169120:CDS 35.0%
TCTTTACAAGTACAATCCGT+GGG + chr7_4:62065366-62065385 Msa1169120:CDS 35.0%
GAAGTTGTTAAAGACAGACT+TGG - chr7_4:62065397-62065416 None:intergenic 35.0%
!! TTAACAGGTAAGGCTTTGTT+TGG + chr7_4:62065494-62065513 Msa1169120:intron 35.0%
AACCCACATGAAGTAAGAAT+AGG - chr7_4:62065629-62065648 None:intergenic 35.0%
GAAAGCTCTTGTGTTCTATA+AGG + chr7_4:62065667-62065686 Msa1169120:CDS 35.0%
GATGACAACTTAAACGTGAT+TGG + chr7_4:62066329-62066348 Msa1169120:CDS 35.0%
TTCTTATCAGCTACAACTGA+GGG + chr7_4:62066359-62066378 Msa1169120:CDS 35.0%
!! TAAACAGAGAAGTTGATGGT+AGG + chr7_4:62066462-62066481 Msa1169120:CDS 35.0%
! ATTTCTACAGCTTTGATCAG+TGG + chr7_4:62066522-62066541 Msa1169120:CDS 35.0%
TCAGAAATTCAACTTCCTCC+TGG + chr7_4:62065244-62065263 Msa1169120:CDS 40.0%
CAATGAGTTCTTCATCAGAC+GGG - chr7_4:62065282-62065301 None:intergenic 40.0%
!! GAAAGTATCCCAAAGGATTG+AGG + chr7_4:62065552-62065571 Msa1169120:CDS 40.0%
CTATTAGGCCTCAATCCTTT+GGG - chr7_4:62065563-62065582 None:intergenic 40.0%
TCTATTAGGCCTCAATCCTT+TGG - chr7_4:62065564-62065583 None:intergenic 40.0%
GTAGGTTATTGGAAAGCAAC+TGG + chr7_4:62065593-62065612 Msa1169120:CDS 40.0%
! TCATGTGGGTTGAAAAGCAT+TGG + chr7_4:62065638-62065657 Msa1169120:CDS 40.0%
!!! TCAGTTTTAGATCCCTTTGG+TGG - chr7_4:62065698-62065717 None:intergenic 40.0%
!!! CACTCAGTTTTAGATCCCTT+TGG - chr7_4:62065701-62065720 None:intergenic 40.0%
! CAAAGGGATCTAAAACTGAG+TGG + chr7_4:62065699-62065718 Msa1169120:CDS 40.0%
AGTGGATCATGCATGAGTAT+AGG + chr7_4:62065717-62065736 Msa1169120:CDS 40.0%
TCTCATAGAGCCACTATGAT+TGG - chr7_4:62065768-62065787 None:intergenic 40.0%
TGTCTGTGTTAGTGCTTCAT+AGG - chr7_4:62065831-62065850 None:intergenic 40.0%
! CTTCAGTTTAAAGGTGTGTC+CGG - chr7_4:62065948-62065967 None:intergenic 40.0%
! TTTCCTTCTTTTGCTTCAGC+TGG + chr7_4:62066055-62066074 Msa1169120:intron 40.0%
ATGCCGTGTTCGACAAAAAA+TGG + chr7_4:62066091-62066110 Msa1169120:CDS 40.0%
TGCCGTGTTCGACAAAAAAT+GGG + chr7_4:62066092-62066111 Msa1169120:CDS 40.0%
!!! TGCCCATTTTTTGTCGAACA+CGG - chr7_4:62066097-62066116 None:intergenic 40.0%
AATCTTCCCAACTGCTTCTT+GGG - chr7_4:62066121-62066140 None:intergenic 40.0%
!!! ACATAGTTTTGGACTGGTTC+AGG - chr7_4:62066203-62066222 None:intergenic 40.0%
GAGGTCATACCAATGGAATT+AGG - chr7_4:62066278-62066297 None:intergenic 40.0%
! ATTGTCTGAGGTCATACCAA+TGG - chr7_4:62066285-62066304 None:intergenic 40.0%
GTTCTTATCAGCTACAACTG+AGG + chr7_4:62066358-62066377 Msa1169120:CDS 40.0%
TGTCGAAGATAATGTTGCCA+TGG + chr7_4:62066412-62066431 Msa1169120:CDS 40.0%
GAGGACATCATAAAAGTCCA+TGG - chr7_4:62066432-62066451 None:intergenic 40.0%
TCAGAAATTCAACTTCCTCC+TGG + chr7_4:62065244-62065263 Msa1169120:CDS 40.0%
CAATGAGTTCTTCATCAGAC+GGG - chr7_4:62065282-62065301 None:intergenic 40.0%
!! GAAAGTATCCCAAAGGATTG+AGG + chr7_4:62065552-62065571 Msa1169120:CDS 40.0%
CTATTAGGCCTCAATCCTTT+GGG - chr7_4:62065563-62065582 None:intergenic 40.0%
TCTATTAGGCCTCAATCCTT+TGG - chr7_4:62065564-62065583 None:intergenic 40.0%
GTAGGTTATTGGAAAGCAAC+TGG + chr7_4:62065593-62065612 Msa1169120:CDS 40.0%
! TCATGTGGGTTGAAAAGCAT+TGG + chr7_4:62065638-62065657 Msa1169120:CDS 40.0%
!!! TCAGTTTTAGATCCCTTTGG+TGG - chr7_4:62065698-62065717 None:intergenic 40.0%
!!! CACTCAGTTTTAGATCCCTT+TGG - chr7_4:62065701-62065720 None:intergenic 40.0%
! CAAAGGGATCTAAAACTGAG+TGG + chr7_4:62065699-62065718 Msa1169120:CDS 40.0%
AGTGGATCATGCATGAGTAT+AGG + chr7_4:62065717-62065736 Msa1169120:CDS 40.0%
TCTCATAGAGCCACTATGAT+TGG - chr7_4:62065768-62065787 None:intergenic 40.0%
TGTCTGTGTTAGTGCTTCAT+AGG - chr7_4:62065831-62065850 None:intergenic 40.0%
! CTTCAGTTTAAAGGTGTGTC+CGG - chr7_4:62065948-62065967 None:intergenic 40.0%
! TTTCCTTCTTTTGCTTCAGC+TGG + chr7_4:62066055-62066074 Msa1169120:intron 40.0%
ATGCCGTGTTCGACAAAAAA+TGG + chr7_4:62066091-62066110 Msa1169120:CDS 40.0%
TGCCGTGTTCGACAAAAAAT+GGG + chr7_4:62066092-62066111 Msa1169120:CDS 40.0%
!!! TGCCCATTTTTTGTCGAACA+CGG - chr7_4:62066097-62066116 None:intergenic 40.0%
AATCTTCCCAACTGCTTCTT+GGG - chr7_4:62066121-62066140 None:intergenic 40.0%
!!! ACATAGTTTTGGACTGGTTC+AGG - chr7_4:62066203-62066222 None:intergenic 40.0%
GAGGTCATACCAATGGAATT+AGG - chr7_4:62066278-62066297 None:intergenic 40.0%
! ATTGTCTGAGGTCATACCAA+TGG - chr7_4:62066285-62066304 None:intergenic 40.0%
GTTCTTATCAGCTACAACTG+AGG + chr7_4:62066358-62066377 Msa1169120:CDS 40.0%
TGTCGAAGATAATGTTGCCA+TGG + chr7_4:62066412-62066431 Msa1169120:CDS 40.0%
GAGGACATCATAAAAGTCCA+TGG - chr7_4:62066432-62066451 None:intergenic 40.0%
GCTATGAATGAAGCAGGAAG+AGG - chr7_4:62065337-62065356 None:intergenic 45.0%
! CTTTGTTTGGCGAGGAAGAA+TGG + chr7_4:62065507-62065526 Msa1169120:CDS 45.0%
TTGGGATACTTTCTGTCCCT+TGG - chr7_4:62065545-62065564 None:intergenic 45.0%
!! AGGGACAGAAAGTATCCCAA+AGG + chr7_4:62065545-62065564 Msa1169120:CDS 45.0%
TATAAGGGACGTCCACCAAA+GGG + chr7_4:62065683-62065702 Msa1169120:CDS 45.0%
! CATAGTGGCTCTATGAGAGT+AGG + chr7_4:62065770-62065789 Msa1169120:intron 45.0%
CATCCAGCTGAAGCAAAAGA+AGG - chr7_4:62066061-62066080 None:intergenic 45.0%
! TTTTGCTTCAGCTGGATGAG+TGG + chr7_4:62066063-62066082 Msa1169120:intron 45.0%
TTTGCTTCAGCTGGATGAGT+GGG + chr7_4:62066064-62066083 Msa1169120:intron 45.0%
GAATCTTCCCAACTGCTTCT+TGG - chr7_4:62066122-62066141 None:intergenic 45.0%
GGTTCAGGATTAGAGTTCAC+AGG - chr7_4:62066188-62066207 None:intergenic 45.0%
AGTGCTCTGCCTAATTCCAT+TGG + chr7_4:62066266-62066285 Msa1169120:CDS 45.0%
! TCGACAGCTTTTCTCTTCAG+TGG - chr7_4:62066398-62066417 None:intergenic 45.0%
GCTATGAATGAAGCAGGAAG+AGG - chr7_4:62065337-62065356 None:intergenic 45.0%
! CTTTGTTTGGCGAGGAAGAA+TGG + chr7_4:62065507-62065526 Msa1169120:CDS 45.0%
TTGGGATACTTTCTGTCCCT+TGG - chr7_4:62065545-62065564 None:intergenic 45.0%
!! AGGGACAGAAAGTATCCCAA+AGG + chr7_4:62065545-62065564 Msa1169120:CDS 45.0%
TATAAGGGACGTCCACCAAA+GGG + chr7_4:62065683-62065702 Msa1169120:CDS 45.0%
! CATAGTGGCTCTATGAGAGT+AGG + chr7_4:62065770-62065789 Msa1169120:intron 45.0%
CATCCAGCTGAAGCAAAAGA+AGG - chr7_4:62066061-62066080 None:intergenic 45.0%
! TTTTGCTTCAGCTGGATGAG+TGG + chr7_4:62066063-62066082 Msa1169120:intron 45.0%
TTTGCTTCAGCTGGATGAGT+GGG + chr7_4:62066064-62066083 Msa1169120:intron 45.0%
GAATCTTCCCAACTGCTTCT+TGG - chr7_4:62066122-62066141 None:intergenic 45.0%
GGTTCAGGATTAGAGTTCAC+AGG - chr7_4:62066188-62066207 None:intergenic 45.0%
AGTGCTCTGCCTAATTCCAT+TGG + chr7_4:62066266-62066285 Msa1169120:CDS 45.0%
! TCGACAGCTTTTCTCTTCAG+TGG - chr7_4:62066398-62066417 None:intergenic 45.0%
GGGTGGAATCTAAATCCAGG+AGG - chr7_4:62065262-62065281 None:intergenic 50.0%
GACGGGTGGAATCTAAATCC+AGG - chr7_4:62065265-62065284 None:intergenic 50.0%
TGAGTTCTTCATCAGACGGG+TGG - chr7_4:62065279-62065298 None:intergenic 50.0%
!! AGGTAAGGCTTTGTTTGGCG+AGG + chr7_4:62065499-62065518 Msa1169120:intron 50.0%
TTGAGGCCTAATAGAGCAGC+TGG + chr7_4:62065569-62065588 Msa1169120:CDS 50.0%
CCTACACCAGCTGCTCTATT+AGG - chr7_4:62065578-62065597 None:intergenic 50.0%
CCTAATAGAGCAGCTGGTGT+AGG + chr7_4:62065575-62065594 Msa1169120:CDS 50.0%
GAGCAGCTGGTGTAGGTTAT+TGG + chr7_4:62065582-62065601 Msa1169120:CDS 50.0%
CTATAAGGGACGTCCACCAA+AGG + chr7_4:62065682-62065701 Msa1169120:CDS 50.0%
CACTGACACACGTTGAACAC+CGG + chr7_4:62065926-62065945 Msa1169120:intron 50.0%
GGGTGGAATCTAAATCCAGG+AGG - chr7_4:62065262-62065281 None:intergenic 50.0%
GACGGGTGGAATCTAAATCC+AGG - chr7_4:62065265-62065284 None:intergenic 50.0%
TGAGTTCTTCATCAGACGGG+TGG - chr7_4:62065279-62065298 None:intergenic 50.0%
!! AGGTAAGGCTTTGTTTGGCG+AGG + chr7_4:62065499-62065518 Msa1169120:intron 50.0%
TTGAGGCCTAATAGAGCAGC+TGG + chr7_4:62065569-62065588 Msa1169120:CDS 50.0%
CCTACACCAGCTGCTCTATT+AGG - chr7_4:62065578-62065597 None:intergenic 50.0%
CCTAATAGAGCAGCTGGTGT+AGG + chr7_4:62065575-62065594 Msa1169120:CDS 50.0%
GAGCAGCTGGTGTAGGTTAT+TGG + chr7_4:62065582-62065601 Msa1169120:CDS 50.0%
CTATAAGGGACGTCCACCAA+AGG + chr7_4:62065682-62065701 Msa1169120:CDS 50.0%
CACTGACACACGTTGAACAC+CGG + chr7_4:62065926-62065945 Msa1169120:intron 50.0%
GACAGACTTGGAAGCTCCCA+CGG - chr7_4:62065385-62065404 None:intergenic 55.0%
GACAGACTTGGAAGCTCCCA+CGG - chr7_4:62065385-62065404 None:intergenic 55.0%
TGGGCAGCCCAAGAAGCAGT+TGG + chr7_4:62066111-62066130 Msa1169120:CDS 60.0%
GGGCAGCCCAAGAAGCAGTT+GGG + chr7_4:62066112-62066131 Msa1169120:CDS 60.0%
TGGGCAGCCCAAGAAGCAGT+TGG + chr7_4:62066111-62066130 Msa1169120:CDS 60.0%
GGGCAGCCCAAGAAGCAGTT+GGG + chr7_4:62066112-62066131 Msa1169120:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 62065226 62066601 62065226 ID=Msa1169120;Name=Msa1169120
chr7_4 mRNA 62065226 62066601 62065226 ID=Msa1169120-mRNA-1;Parent=Msa1169120;Name=Msa1169120-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|328
chr7_4 exon 62065226 62065397 62065226 ID=Msa1169120-mRNA-1:exon:19578;Parent=Msa1169120-mRNA-1
chr7_4 exon 62065501 62065787 62065501 ID=Msa1169120-mRNA-1:exon:19579;Parent=Msa1169120-mRNA-1
chr7_4 exon 62066074 62066601 62066074 ID=Msa1169120-mRNA-1:exon:19580;Parent=Msa1169120-mRNA-1
chr7_4 CDS 62065226 62065397 62065226 ID=Msa1169120-mRNA-1:cds;Parent=Msa1169120-mRNA-1
chr7_4 CDS 62065501 62065787 62065501 ID=Msa1169120-mRNA-1:cds;Parent=Msa1169120-mRNA-1
chr7_4 CDS 62066074 62066601 62066074 ID=Msa1169120-mRNA-1:cds;Parent=Msa1169120-mRNA-1
Gene Sequence

>Msa1169120

ATGGACAAAAATCCTCATTCAGAAATTCAACTTCCTCCTGGATTTAGATTCCACCCGTCTGATGAAGAACTCATTGTTCACTATCTACGAAACAAAGTGACTTCATCTCCTCTTCCTGCTTCATTCATAGCAGAAATAAATCTTTACAAGTACAATCCGTGGGAGCTTCCAAGTAAGGCTTTGTTTGGCGAGGAAGAATGGTATTTCTTTACTCCAAGGGACAGAAAGTATCCCAAAGGATTGAGGCCTAATAGAGCAGCTGGTGTAGGTTATTGGAAAGCAACTGGAACTGACAAACCTATTCTTACTTCATGTGGGTTGAAAAGCATTGGAGTGAAGAAAGCTCTTGTGTTCTATAAGGGACGTCCACCAAAGGGATCTAAAACTGAGTGGATCATGCATGAGTATAGGTTGCATGACTCGATGATCTCAAATTCCAATCATAGTGGCTCTATGAGACTGGATGAGTGGGTGCTATGCCGTGTTCGACAAAAAATGGGCAGCCCAAGAAGCAGTTGGGAAGATTCAAATGAACTTAGCTATGAATCAACTAGTCAATTTCAGCACATGCCTGTGAACTCTAATCCTGAACCAGTCCAAAACTATGTACAAAATGAATATCCAATGTTACCTTATATTTTGGCTTCTAAGAGTGCTCTGCCTAATTCCATTGGTATGACCTCAGACAATGTAAATATACAAGCTTCATCTTATGATGACAACTTAAACGTGATTGGAGCACAGTTCTTATCAGCTACAACTGAGGGATTGTTTAATAAACCACTGAAGAGAAAAGCTGTCGAAGATAATGTTGCCATGGACTTTTATGATGTCCTCAATAAAAGTTTAAACAGAGAAGTTGATGGTAGGAAGCAAAGTCTTGAAAAAGATTTAAGCAAAGGGTATAATTTCTACAGCTTTGATCAGTGGACTTCAATCATACAACCTCAAGAGCTTAATAACTTAACCTTCACTGGATATACATAA
Protein sequence

>Msa1169120

MDKNPHSEIQLPPGFRFHPSDEELIVHYLRNKVTSSPLPASFIAEINLYKYNPWELPSKALFGEEEWYFFTPRDRKYPKGLRPNRAAGVGYWKATGTDKPILTSCGLKSIGVKKALVFYKGRPPKGSKTEWIMHEYRLHDSMISNSNHSGSMRLDEWVLCRVRQKMGSPRSSWEDSNELSYESTSQFQHMPVNSNPEPVQNYVQNEYPMLPYILASKSALPNSIGMTSDNVNIQASSYDDNLNVIGAQFLSATTEGLFNKPLKRKAVEDNVAMDFYDVLNKSLNREVDGRKQSLEKDLSKGYNFYSFDQWTSIIQPQELNNLTFTGYT*