AlfalfaGEDB | Msa0608060

M. sativa cultivar zhongmu-4 / Msa0608060

KEGG: K20924
GO: GO:0000030 GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005886 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016021 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0019187 GO:0021700 GO:0022622 GO:0030154 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051753 GO:0060560 GO:0070085 GO:0071554 GO:0071669 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0097502 GO:0097708 GO:0098588 GO:0098791 GO:0099402 GO:1905392
PFAM: PF14570.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0608060	XP_003607427.1	99.737	1142	3	0	1	1142	1	1142	0.0	2368

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0608060	sp\|Q9M9M4\|CSLD3_ARATH	83.947	1140	173	7	9	1142	10	1145	0.0	2013

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0207680	Msa0608060	0.847783	9.292513e-60	-8.615850e-47
Msa0207690	Msa0608060	0.856969	2.246008e-62	-8.615850e-47
Msa0209360	Msa0608060	0.865913	4.181186e-65	-8.615850e-47
Msa0242820	Msa0608060	0.808526	2.965966e-50	-8.615850e-47
Msa0287640	Msa0608060	0.808235	3.421523e-50	-8.615850e-47
Msa0287660	Msa0608060	0.816760	4.682714e-52	-8.615850e-47
Msa0295680	Msa0608060	0.821269	4.417139e-53	-8.615850e-47
Msa0553950	Msa0608060	0.840574	8.010396e-58	-8.615850e-47
Msa0570680	Msa0608060	-0.812288	4.571831e-51	-8.615850e-47
Msa0581370	Msa0608060	0.815653	8.281728e-52	-8.615850e-47

Showing 1 to 10 of 36 entries

Previous1 2 3 4Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0608060	MtrunA17_Chr4g0039801	99.737	1142	3	0	1	1142	1	1142	0.0	2368
Msa0608060	MtrunA17_Chr5g0410641	75.358	1116	249	8	43	1142	16	1121	0.0	1747
Msa0608060	MtrunA17_Chr1g0165411	71.989	1121	272	13	29	1142	20	1105	0.0	1665
Msa0608060	MtrunA17_Chr1g0165421	70.018	1124	310	11	29	1142	27	1133	0.0	1631
Msa0608060	MtrunA17_Chr7g0269741	66.109	1136	332	17	35	1142	61	1171	0.0	1473
Msa0608060	MtrunA17_Chr2g0297351	69.726	948	265	9	202	1140	88	1022	0.0	1413
Msa0608060	MtrunA17_Chr7g0274751	75.161	934	76	12	206	1139	30	807	0.0	1362
Msa0608060	MtrunA17_Chr7g0274751	93.939	33	2	0	106	138	1	33	2.52e-11	68.2
Msa0608060	MtrunA17_Chr4g0073711	48.950	952	388	19	188	1128	157	1021	0.0	876
Msa0608060	MtrunA17_Chr8g0383701	47.739	951	362	19	237	1133	215	1084	0.0	853

Showing 1 to 10 of 48 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0608060	AT3G03050.1	83.947	1140	173	7	9	1142	10	1145	2013
Msa0608060	AT5G16910.1	82.635	1146	187	5	4	1142	5	1145	1969
Msa0608060	AT4G38190.1	72.554	1104	266	12	30	1128	21	1092	1677
Msa0608060	AT1G02730.1	64.842	1169	352	16	10	1142	36	1181	1509
Msa0608060	AT2G33100.2	70.483	952	256	9	198	1137	95	1033	1431
Msa0608060	AT2G33100.1	70.483	952	256	9	198	1137	95	1033	1431
Msa0608060	AT1G32180.1	66.369	895	283	7	258	1141	91	978	1248
Msa0608060	AT1G32180.2	66.369	895	283	7	258	1141	91	978	1248
Msa0608060	AT5G09870.1	42.703	1110	438	24	124	1128	36	1052	862
Msa0608060	AT5G05170.1	50.847	885	329	16	272	1128	242	1048	861

Showing 1 to 10 of 45 entries

Previous1 2 3 4 5Next

Find 317 sgRNAs with CRISPR-Local

Find 440 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATGAGCTATCATCA+TGG	0.547173	4_2:+55063527	None:intergenic
AAACATCAGAGACAAAATAG+GGG	0.704908	4_2:-55065817	Msa0608060:CDS
AAACCTTCTAAACAGACAGC+CGG	0.619310	4_2:+55064849	None:intergenic
AAAGAATGAGCTATCATCAT+GGG	0.557305	4_2:+55063528	None:intergenic
AAAGAGGCTTCGTACCGATA+TGG	0.318012	4_2:+55066964	None:intergenic
AAAGAGTGTTATATAAGAAG+TGG	0.518228	4_2:+55069009	None:intergenic
AAAGCAACATGGATGGCTGA+TGG	0.546687	4_2:-55065763	Msa0608060:CDS
AAAGGTTTGATGGGAAGAAG+AGG	0.558986	4_2:-55063668	Msa0608060:CDS
AAATGTTACGGTTGGATGTA+AGG	0.415264	4_2:+55067746	None:intergenic
AACAACTACAGAAAGATGCG+CGG	0.723770	4_2:+55064788	None:intergenic

Showing 1 to 10 of 317 entries

Previous1 2 3 4 5…32Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTGAGATCTATGTGTGAAAA+GGG	+	chr4_2:55063528-55063547	None:intergenic	30.0%
CAACTAGAAAAACTCAAAGT+AGG	+	chr4_2:55063971-55063990	None:intergenic	30.0%
CAAAAAAAATTGCATCAGCT+TGG	+	chr4_2:55064182-55064201	None:intergenic	30.0%
TCTGTGTTAAAAAGATGTTG+AGG	-	chr4_2:55064255-55064274	Msa0608060:CDS	30.0%
CTGCTCATTTGTAATGATTT+CGG	+	chr4_2:55064622-55064641	None:intergenic	30.0%
ATCTTATAATCACACTCACA+GGG	+	chr4_2:55065054-55065073	None:intergenic	30.0%
TATCTTATAATCACACTCAC+AGG	+	chr4_2:55065055-55065074	None:intergenic	30.0%
TCAAGTTCTGTGTTCTTATA+TGG	+	chr4_2:55065141-55065160	None:intergenic	30.0%
ATAGAAGAATGGAAATTGGA+TGG	-	chr4_2:55065705-55065724	Msa0608060:CDS	30.0%
TACAGATCTTAATGTTCTGA+AGG	-	chr4_2:55066131-55066150	Msa0608060:CDS	30.0%

Showing 1 to 10 of 440 entries

Previous1 2 3 4 5…44Next

Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	55063313	55069144	55063313	ID=Msa0608060;Name=Msa0608060
chr4_2	mRNA	55063313	55069144	55063313	ID=Msa0608060-mRNA-1;Parent=Msa0608060;Name=Msa0608060-mRNA-1;_AED=0.17;_eAED=0.17;_QI=307\|1\|1\|1\|0.66\|0.5\|4\|231\|1142
chr4_2	exon	55063313	55065298	55063313	ID=Msa0608060-mRNA-1:exon:13952;Parent=Msa0608060-mRNA-1
chr4_2	exon	55065690	55066497	55065690	ID=Msa0608060-mRNA-1:exon:13951;Parent=Msa0608060-mRNA-1
chr4_2	exon	55066979	55067878	55066979	ID=Msa0608060-mRNA-1:exon:13950;Parent=Msa0608060-mRNA-1
chr4_2	exon	55068872	55069144	55068872	ID=Msa0608060-mRNA-1:exon:13949;Parent=Msa0608060-mRNA-1
chr4_2	five_prime_UTR	55068872	55069144	55068872	ID=Msa0608060-mRNA-1:five_prime_utr;Parent=Msa0608060-mRNA-1
chr4_2	five_prime_UTR	55067845	55067878	55067845	ID=Msa0608060-mRNA-1:five_prime_utr;Parent=Msa0608060-mRNA-1
chr4_2	CDS	55066979	55067844	55066979	ID=Msa0608060-mRNA-1:cds;Parent=Msa0608060-mRNA-1
chr4_2	CDS	55065690	55066497	55065690	ID=Msa0608060-mRNA-1:cds;Parent=Msa0608060-mRNA-1
chr4_2	CDS	55063544	55065298	55063544	ID=Msa0608060-mRNA-1:cds;Parent=Msa0608060-mRNA-1
chr4_2	three_prime_UTR	55063313	55063543	55063313	ID=Msa0608060-mRNA-1:three_prime_utr;Parent=Msa0608060-mRNA-1

Gene Sequence

>Msa0608060

ATGAAGCCGAAATCATTACAAATGAGCAGATCATCTTTGTCAACATCTTCTGATGTATCTGAAGCACAGAAGCCTCCCTTACATCCAACCGTAACATTTGGCCGAAGAACTTCATCCGGTCGATACATCAGTTACTCCAGAGATGATCTTGATAGCGAGCTAGGAAGTAATGACTTCATGAACTATACAGTGCACTTACCACCCACTCCGGATAACCAACCTATGGATACCTCAATCTCGCAGAAAGTTGAGGAGCAGTATGTTTCAAGTTCTCTATTCACTGGAGGATTTAACAGTATTACCCGTGCACATCTAATGGATAAAGTTACAGAATCTGAAGTAAATCATCCACAGATGGCTGGTGCAAAAGGGTCGAAATGTGCTATTCCTGGCTGTGATTCTAAGGTGATGAGTGATGAACGTGGTGACGACATTCTTCCCTGTGAGTGTGATTATAAGATATGTAGAGATTGCTATATAGATGCAGTGAAAATAGGAGATGGGATGTGCCCAGGATGCAAAGAGCCATATAAGAACACAGAACTTGATGAAGTGGCTGTGAATAATGGAGGGCCACTTCCACTTCCTCCACCAAATGGGGGGTCTAAAATGGAGAGGAGATTGTCCTTGATGAAATCGACAAAGTCTGCGCTGATGAGAAGTCAAACTGGAGACTTTGATCACAATCGATGGTTGTTTGAAACAAAGGGGACATATGGTTATGGCAATGCAATATGGCCAAAGGAAGGGGATTTCGGAAATGGAAAAGATGGTGATGTTTCTGAGCCAACTGAATTGATGAGCCGACCATGGAGGCCACTAACAAGGAAGTTGAAGATACCTGCTGCTGTTCTCAGCCCATATCGTCTCATCATTTTTATCCGTTTGGTTGCTCTTGTGTTGTTCCTGCACTGGAGGGTCACACATAAAAATACGGATGCAGTCTGGTTATGGGGCATGTCTATAGTTTGTGAATTATGGTTTGCTTTCTCTTGGCTTCTTGATCAACTGCCCAAGCTATGCCCAGTAAATCGTTCTACAGATCTTAATGTTCTGAAGGAAAAATTTGAATCACCAAGTCCTAACAATCCTACAGGAAAGTCTGATCTTCCAGGCATAGATATCTTTGTTTCAACTGCTGATCCTGAGAAAGAACCACCACTTGTCACAGCAAACACCATCTTGTCGATTTTAGCTGCTGACTATCCAGTTGAGAAGCTTTCTTGCTATGTTTCTGATGATGGAGGTGCACTTTTAACTTTTGAGGCAATGGCCGAGGCTGCTAGCTTTGCTAATAACTGGGTTCCATTCTGCCGCAAACATGATATCGAGCCTAGGAATCCTGAATCATACTTCAGCTTAAAGAGAGATCCTTACAAAAACAAAGTGAAACCTGATTTCGTGAAGGATCGTAGAAGGTTGAAGCGTGAGTATGATGAGTTCAAGGTCAGAATCAATGGTTTGCCCGACTCTATCCGTCGCAGGTCAGATGCTTTTCACGCAAGAGAGGAAATCAAGGCCATGAAACATCAGAGACAAAATAGGGGTGATGAACCTGTTGAGCCTATAAAGGTTCAAAAAGCAACATGGATGGCTGATGGATCTCATTGGCCAGGGACTTGGTTGAACACTTCACCTGAGCACTCAAGGGGTGACCATGCTGGCATAATTCAGGTGATGTTGAAGCCTCCAAGTGACGAACCTCTTATTGGAAATGCTGATGATGCAAAGCTTATTGACCTGACCGATGTTGATATCCGTCTTCCCCTTCTTGTTTATGTTTCTAGAGAGAAACGTCCAGGTTACGATCACAACAAAAAAGCTGGGGCCATGAATGCATTGGTTAGAGCCTCGGCTGTCATGTCCAACGGTCCTTTTATACTTAACCTCGACTGTGATCACTATATATATAACTCCAAAGCAATGAGGGAAGGTATGTGCTTTATGATGGATCGTGGTGGCGATCGCCTCTGCTATGTCCAATTCCCTCAAAGGTTTGAGGGTATTGATCCCTCTGATAGATATGCTAATCACAACACCGTCTTCTTTGATGTTAACATGAGAGCCCTTGATGGACTTCAAGGCCCAGTCTATGTAGGAACCGGCTGTCTGTTTAGAAGGTTTGCTCTTTATGGTTTTGATCCTCCACGCGCCAAAGAAGACCGCGCATCTTTCTGTAGTTGTTGCTTTGGGCGTAATAAGAAGAAGCATGCCAACACCTCAGAAGAGAACAGGGCACTAAGGATGGGTGACGACTCTGATGATGAAGAGATGAATCTTTCACAATTCTCGAAGAAATTTGGGAACTCAAATATCCTTATTGACTCAATTCCAGTGGCACAGTTCCAAGGTAGGCCACTTGCTGATCATCCTGCTGTGAAAAATGGACGACCTCCTGGTGCTCTCACTATACCTCGTGAGCTGCTTGATGCATCAACTGTGGCAGAAGCCATCAGTGTGATTTCATGTTGGTATGAGGACAAGACTGAGTGGGGACAGCGTGTTGGATGGATCTATGGATCAGTTACTGAGGATGTGGTCACTGGTTATAGGATGCATAATAGAGGATGGAAGTCAGTTTACTGCGTAACTAAACGCGACGCCTTCCGCGGAACTGCTCCCATCAATCTCACTGATAGGTTGCATCAGGTTCTTAGATGGGCTACTGGCTCAGTTGAGATATTCTTCTCTAAAAACAATGCAATTATGGCCACCCGAAGAATGAAATTTCTTCAGAGGATAGCATACCTTAATGTTGGAATTTATCCATTCACTTCGTTTTTTCTTATTGTCTATTGCTTCCTGCCTGCACTGTCCCTCTTCTCTGGACAGTTCATTGTCCAAACACTCGATGTCACTTTTTTGGCTTACCTCTTGGCTATTACTGTGACACTGTGCATTCTTGCTGTGCTTGAAATTAAGTGGTCAGGAATTGAGCTGGAAGAATGGTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGGACTAGTGCACATCTAGCTGCCGTGCTTCAAGGTTTACTCAAAGTCGTTGCAGGCATTGAAATCTCATTCACCTTGACTTCAAAATCTGGCGGTGATGATGTTGACGACGAGTATGCTGATCTGTATATTGTCAAATGGTCATCCCTTATGATACCGCCAATTGTAATCATGATGGTGAACTTGATAGGAATAGCTGTCGGAGTTAGCAGAACCATATACAGTACCATACCACAGTGGAGCCGTTTACTAGGCGGTGTTTTCTTCAGCTTTTGGGTCTTGGCTCATCTCTATCCTTTTGCAAAAGGTTTGATGGGAAGAAGAGGGAGGACACCCACCATTGTTTTTGTATGGTCGGGTCTAATAGCAATCATCATATCACTCCTCTGGGTGGCTATCAATCCACCAGCCGGTACAGACCAGATAGGCGGTTCATTCCAATTCCCATGA

Protein sequence

>Msa0608060

MKPKSLQMSRSSLSTSSDVSEAQKPPLHPTVTFGRRTSSGRYISYSRDDLDSELGSNDFMNYTVHLPPTPDNQPMDTSISQKVEEQYVSSSLFTGGFNSITRAHLMDKVTESEVNHPQMAGAKGSKCAIPGCDSKVMSDERGDDILPCECDYKICRDCYIDAVKIGDGMCPGCKEPYKNTELDEVAVNNGGPLPLPPPNGGSKMERRLSLMKSTKSALMRSQTGDFDHNRWLFETKGTYGYGNAIWPKEGDFGNGKDGDVSEPTELMSRPWRPLTRKLKIPAAVLSPYRLIIFIRLVALVLFLHWRVTHKNTDAVWLWGMSIVCELWFAFSWLLDQLPKLCPVNRSTDLNVLKEKFESPSPNNPTGKSDLPGIDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANNWVPFCRKHDIEPRNPESYFSLKRDPYKNKVKPDFVKDRRRLKREYDEFKVRINGLPDSIRRRSDAFHAREEIKAMKHQRQNRGDEPVEPIKVQKATWMADGSHWPGTWLNTSPEHSRGDHAGIIQVMLKPPSDEPLIGNADDAKLIDLTDVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAVMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRFALYGFDPPRAKEDRASFCSCCFGRNKKKHANTSEENRALRMGDDSDDEEMNLSQFSKKFGNSNILIDSIPVAQFQGRPLADHPAVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSKNNAIMATRRMKFLQRIAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIVQTLDVTFLAYLLAITVTLCILAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVVAGIEISFTLTSKSGGDDVDDEYADLYIVKWSSLMIPPIVIMMVNLIGIAVGVSRTIYSTIPQWSRLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAIIISLLWVAINPPAGTDQIGGSFQFP*