AlfalfaGEDB | Msa1047230

M. sativa cultivar zhongmu-4 / Msa1047230

KEGG: K04733
GO: -
PFAM: PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1047230	XP_013447826.3	93.661	773	49	0	1	773	16	788	0.0	1439

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1047230	sp\|Q8VZG8\|MIK2_ARATH	41.150	661	355	14	104	741	396	1045	2.48e-157	487
Msa1047230	sp\|Q8VZG8\|MIK2_ARATH	35.197	304	190	3	86	383	162	464	1.30e-37	155
Msa1047230	sp\|Q8VZG8\|MIK2_ARATH	39.247	186	113	0	90	275	478	663	9.54e-32	136
Msa1047230	sp\|Q8VZG8\|MIK2_ARATH	35.393	178	104	3	66	232	493	670	1.22e-17	91.7

Showing 1 to 4 of 4 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1047230	A0A396GV15	93.661	773	49	0	1	773	16	788	0.0	1439

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0038310	Msa1047230	0.810508	1.113336e-50	-8.615850e-47
Msa0089080	Msa1047230	-0.823210	1.565481e-53	-8.615850e-47
Msa0135890	Msa1047230	-0.816116	6.526592e-52	-8.615850e-47
Msa0568610	Msa1047230	0.806233	9.085134e-50	-8.615850e-47
Msa0618520	Msa1047230	0.807919	3.995006e-50	-8.615850e-47
Msa1047230	Msa1047700	0.804558	2.039015e-49	-8.615850e-47
Msa1047230	Msa1134690	0.803846	2.869210e-49	-8.615850e-47
Msa1047230	Msa1356180	0.804305	2.302123e-49	-8.615850e-47
Msa1047230	Msa1361190	0.803016	4.262258e-49	-8.615850e-47

Showing 1 to 9 of 9 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1047230	MtrunA17_Chr7g0215011	93.661	773	49	0	1	773	16	788	1439
Msa1047230	MtrunA17_Chr7g0215061	69.315	818	206	6	1	773	12	829	1109
Msa1047230	MtrunA17_Chr7g0215641	71.133	821	137	4	1	770	1	772	1108
Msa1047230	MtrunA17_Chr7g0215671	71.964	774	184	4	1	773	16	757	1083
Msa1047230	MtrunA17_Chr7g0215631	71.851	778	180	5	1	770	1	747	1069
Msa1047230	MtrunA17_Chr7g0215651	69.935	775	197	4	1	773	1	741	1054
Msa1047230	MtrunA17_Chr7g0215681	70.128	780	219	8	1	773	16	788	1034
Msa1047230	MtrunA17_Chr7g0217061	62.228	826	203	8	1	770	16	788	942
Msa1047230	MtrunA17_Chr7g0218991	63.226	775	249	6	1	773	24	764	940
Msa1047230	MtrunA17_Chr8g0357191	67.073	738	169	4	102	773	268	997	935

Showing 1 to 10 of 1,126 entries

Previous1 2 3 4 5…113Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1047230	AT4G08850.1	41.150	661	355	14	104	741	396	1045	2.52e-158	487
Msa1047230	AT4G08850.1	35.197	304	190	3	86	383	162	464	1.32e-38	155
Msa1047230	AT4G08850.1	39.247	186	113	0	90	275	478	663	9.70e-33	136
Msa1047230	AT4G08850.1	35.393	178	104	3	66	232	493	670	1.24e-18	91.7
Msa1047230	AT1G35710.1	38.539	698	370	15	89	741	437	1120	2.38e-146	458
Msa1047230	AT1G35710.1	39.722	360	187	9	28	366	33	383	1.66e-54	204
Msa1047230	AT1G35710.1	40.000	290	167	3	86	369	218	506	3.19e-46	179
Msa1047230	AT1G35710.1	35.144	313	174	4	86	369	290	602	1.80e-37	151
Msa1047230	AT4G08850.2	40.780	564	302	12	104	645	396	949	2.27e-125	400
Msa1047230	AT4G08850.2	35.197	304	190	3	86	383	162	464	1.94e-38	154

Showing 1 to 10 of 1,020 entries

Previous1 2 3 4 5…102Next

Find 123 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGTTAATACTGTTAA+AGG	0.270606	7_2:+7942976	Msa1047230:CDS
AAAATTATATGAAATATCAA+TGG	0.498361	7_2:-7942113	Msa1047220:intron
AAACCCCAACTCAAGAGGAA+TGG	0.577468	7_2:-7941858	Msa1047220:intron
AAGGCAACAACCTTGCCACT+TGG	0.546601	7_2:-7942733	Msa1047220:intron
AAGTGTGATGTATATGGTTT+TGG	0.398329	7_2:+7943413	Msa1047230:CDS
AATAAAACTGAACTACTTCT+GGG	0.419348	7_2:+7943914	Msa1047230:three_prime_UTR
AATAGATTCGGGAATTCTTC+CGG	0.379753	7_2:-7942278	Msa1047220:intron
AATGAAAAGTGTGATGTATA+TGG	0.418804	7_2:+7943407	Msa1047230:CDS
ACCATTTCTTTATTTGGAAG+TGG	0.472188	7_2:-7943548	Msa1047220:intron
ACTATAGTTGCTGGAACTAT+TGG	0.311266	7_2:+7943156	Msa1047230:CDS

Showing 1 to 10 of 123 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CAAACTGCAAATAAGAAGAA+AGG	-	chr7_2:7941270-7941289	Msa1047220:intron	30.0%
CTTATTTGCAGTTTGATTGT+GGG	+	chr7_2:7941275-7941294	Msa1047230:CDS	30.0%
GCAAATGCTATATTGAATAG+TGG	+	chr7_2:7941341-7941360	Msa1047230:CDS	30.0%
ATATCTCTGATCGTTGTAAT+TGG	+	chr7_2:7941393-7941412	Msa1047230:CDS	30.0%
ATGCAATCAAAATAGACTCT+TGG	+	chr7_2:7941450-7941469	Msa1047230:CDS	30.0%
TGCAATCAAAATAGACTCTT+GGG	+	chr7_2:7941451-7941470	Msa1047230:CDS	30.0%
TAACAAGGCTTTCTAAATTG+TGG	-	chr7_2:7941526-7941545	Msa1047220:intron	30.0%
GACCAATTTCTCTTATAACA+AGG	-	chr7_2:7941541-7941560	Msa1047220:intron	30.0%
CTAAGATTATCTATTGAAGG+AGG	-	chr7_2:7941650-7941669	Msa1047220:intron	30.0%
TTTAGATTTCCTAGTGAAGA+AGG	-	chr7_2:7941794-7941813	Msa1047220:intron	30.0%

Showing 1 to 10 of 151 entries

Previous1 2 3 4 5…16Next

Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	7941257	7943940	7941257	ID=Msa1047230;Name=Msa1047230
chr7_2	mRNA	7941257	7943940	7941257	ID=Msa1047230-mRNA-1;Parent=Msa1047230;Name=Msa1047230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|1\|0.5\|1\|1\|1\|2\|171\|773
chr7_2	exon	7941257	7943192	7941257	ID=Msa1047230-mRNA-1:exon:2069;Parent=Msa1047230-mRNA-1
chr7_2	exon	7943384	7943940	7943384	ID=Msa1047230-mRNA-1:exon:2070;Parent=Msa1047230-mRNA-1
chr7_2	CDS	7941257	7943192	7941257	ID=Msa1047230-mRNA-1:cds;Parent=Msa1047230-mRNA-1
chr7_2	CDS	7943384	7943769	7943384	ID=Msa1047230-mRNA-1:cds;Parent=Msa1047230-mRNA-1
chr7_2	three_prime_UTR	7943770	7943940	7943770	ID=Msa1047230-mRNA-1:three_prime_utr;Parent=Msa1047230-mRNA-1

Gene Sequence

>Msa1047230

ATGTGGATTGCCTTTCTTCTTATTTGCAGTTTGATTGTGGGAACTCAATGTTCTGCCACTGTGACATCTCAACTTCAAATGGAAGCAAATGCTATATTGAATAGTGGATGGTGGAACACGTCTGATGCACGCTTCAATATCTCTGATCGTTGTAATTGGCATGATATATCTTGCAACGGTGTTGGAAGCATAAATGCAATCAAAATAGACTCTTGGGGAAGTCAACTTGCAACACTTAACTTGTCTACTTTCAACTTGTCTACTTTCCACAATTTAGAAAGCCTTGTTATAAGAGAAATTGGTCTACTAGGGAGTATCCCAAAAGAAATTGGTCATCTCTCTAAGCTCACTCATCTTGATTTGTCTAACAATTTTCTTGAAGGCCAGGTACCTCCTTCAATAGATAATCTTAGACAATTAAACTACCTAGACATTTCTTTGAACTTTATTCAAGGTTCTATCCCTCCTGAATTGTGGTTGCTAAAAAATCTGACTTTCTTAGATCTATCTAACAATAGATTCAAAGGTGAGATACCTTCTTCACTAGGAAATCTAAAACAATTAGTAGACCTAGACATCTCTAGCAATTACATTCAAGGTTCCATTCCTCTTGAGTTGGGGTTTTTGAAAAATCTCACTAGATTAGATCTATCTAATAATAGATTCAAAGGTGAGATACCTTCTTCACTAAGAAATCTCAAACAATTACAGAAGCTAGACATCTCTCGCAACAAGATTCAAGGTTCCGTTCCTCTTGAGTTGAAGTTCTTGAAAAATATCACTACATTAAATCTATCACACAATAGACTCAATGGAAACTTGCCTATTTCTCTTACAAATCTCACAAAATTAGTATCCATTGATATTTCATATAATTTTCTCACAGGTACCCTTCCTTCCAATTTTTTTTCATTAACATATTTCGAAACTTCCATTGACCTAAGTTGCAACTTCATTAGTGGTGAAATCCCTTCCATGTTTGGAAATTTTCGACAACTTATTTTAAGCAATAATAATCTTACCGGAAGAATTCCCGAATCTATTTGTACCGTTACTTCTATGAACATTTCCTACAATTATTTAAGTGGGTCCATTCCAAATTGTGTTGATCCTTTTTCAATAATAGGGAACAAGGATTTATGCACTAATGTTCCATACAAGAATATCCGCTTCCAATTTCAACCTTGCTCACCTCCCAAGAAAAGTTCTAAACTAAAGCACCATGGTTTCATTGTTCTTTCAATCCTTAGTATTATAATCTTAGCCTTATCATTTCTCATATGCTTCAAACTTCGTCATAGTTCTGTTAAGAACAAGCATGCAAACACAATGACAACAAAGAATGTAGATATGTTTTGTATATGGAATTATGATGGGAAGATAGCATATGATGACATCATCAAAGCAACAGAAGACTTTGACATGAGATATTGCATTGGAACAGGAGCATATGGAAGTGTTTACAAGGCACAATTACCAAGTGGCAAGGTTGTTGCCTTAAAGAAACTTCATGGCTATGAAGCAGAGGTTCCATCTTTTGATGAGAGTTTTAGAAATGAAGTGAGAATATTATCAGAAATAAAGCACCGGCATATTATGAAGCTTTATGGATTCTGCTTGCACAAAAGAATCATGTTTTTGATCTATCAATACATGGAGAAAGGAAGCTTATTCTCTGTCTTGTATGATGATGTGGAAGCTGTGGAATTCAAGTGGAGAAAAAGGGTTAATACTGTTAAAGGAATTGCCTTTGCTCTATCTTATCTTCATCATGACTGCACCGCTCCAATAGTGCATCGAGATGTATCTACTAGCAATATATTGCTAAACTCTGAGTGGCAGGCTAGTGTTTGTGACTTTGGCACAGCTCGACTCCTTCAATATGATTCATCCAATCGAACTATAGTTGCTGGAACTATTGGATATATAGCTCCTGAGCTTGCTTATACTATGGCTGTGAATGAAAAGTGTGATGTATATGGTTTTGGTGTAGTGGCACTTGAAACTTTAGTTGGAAGGCACCCTCAGGATATATTGTCATCACTTCAATCAACATCGACACAAAGTATCAAATTATGTCAAGTATTAGACCAACGACTTCCACTTCCAAATAAAGAAATGGTTACACATGACATAATTCATGTTGCCGTGGTAGCATTTGCATGCTTAAATGTCAATCCTCGTTCTCGACCAACAATGAAACGTGTGTCACAAAGTTTTGCCACTGAGCTGACACCATTAAGAACTCCTTTGAGTGAAATTTCAATGCAGCAACTCTTGAGTCAAGAACTCAAAGCATTATTTTATATTGAGGACCCTTGA

Protein sequence

>Msa1047230

MWIAFLLICSLIVGTQCSATVTSQLQMEANAILNSGWWNTSDARFNISDRCNWHDISCNGVGSINAIKIDSWGSQLATLNLSTFNLSTFHNLESLVIREIGLLGSIPKEIGHLSKLTHLDLSNNFLEGQVPPSIDNLRQLNYLDISLNFIQGSIPPELWLLKNLTFLDLSNNRFKGEIPSSLGNLKQLVDLDISSNYIQGSIPLELGFLKNLTRLDLSNNRFKGEIPSSLRNLKQLQKLDISRNKIQGSVPLELKFLKNITTLNLSHNRLNGNLPISLTNLTKLVSIDISYNFLTGTLPSNFFSLTYFETSIDLSCNFISGEIPSMFGNFRQLILSNNNLTGRIPESICTVTSMNISYNYLSGSIPNCVDPFSIIGNKDLCTNVPYKNIRFQFQPCSPPKKSSKLKHHGFIVLSILSIIILALSFLICFKLRHSSVKNKHANTMTTKNVDMFCIWNYDGKIAYDDIIKATEDFDMRYCIGTGAYGSVYKAQLPSGKVVALKKLHGYEAEVPSFDESFRNEVRILSEIKHRHIMKLYGFCLHKRIMFLIYQYMEKGSLFSVLYDDVEAVEFKWRKRVNTVKGIAFALSYLHHDCTAPIVHRDVSTSNILLNSEWQASVCDFGTARLLQYDSSNRTIVAGTIGYIAPELAYTMAVNEKCDVYGFGVVALETLVGRHPQDILSSLQSTSTQSIKLCQVLDQRLPLPNKEMVTHDIIHVAVVAFACLNVNPRSRPTMKRVSQSFATELTPLRTPLSEISMQQLLSQELKALFYIEDP*