Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356180 | XP_003611409.1 | 98.817 | 338 | 4 | 0 | 1 | 338 | 100 | 437 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356180 | sp|O23553|BAM3_ARATH | 81.361 | 338 | 63 | 0 | 1 | 338 | 99 | 436 | 0.0 | 611 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356180 | G7JYN3 | 98.817 | 338 | 4 | 0 | 1 | 338 | 100 | 437 | 0.0 | 712 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1353670 | Msa1356180 | 0.897539 | 1.274772e-76 | -8.615850e-47 |
| Msa1353680 | Msa1356180 | 0.907156 | 6.869629e-81 | -8.615850e-47 |
| Msa0644770 | Msa1356180 | -0.804227 | 2.390387e-49 | -8.615850e-47 |
| Msa0650640 | Msa1356180 | 0.836513 | 8.953900e-57 | -8.615850e-47 |
| Msa0713210 | Msa1356180 | 0.890323 | 1.093025e-73 | -8.615850e-47 |
| Msa0713220 | Msa1356180 | 0.825056 | 5.769943e-54 | -8.615850e-47 |
| Msa0713230 | Msa1356180 | 0.858841 | 6.243749e-63 | -8.615850e-47 |
| Msa0754350 | Msa1356180 | 0.822725 | 2.030955e-53 | -8.615850e-47 |
| Msa0755080 | Msa1356180 | 0.876463 | 1.368971e-68 | -8.615850e-47 |
| Msa0755090 | Msa1356180 | 0.885249 | 9.571727e-72 | -8.615850e-47 |
| Msa0796950 | Msa1356180 | 0.851640 | 7.777705e-61 | -8.615850e-47 |
| Msa0797000 | Msa1356180 | 0.885813 | 5.880868e-72 | -8.615850e-47 |
| Msa0834450 | Msa1356180 | 0.889572 | 2.147979e-73 | -8.615850e-47 |
| Msa0834460 | Msa1356180 | 0.880069 | 7.435332e-70 | -8.615850e-47 |
| Msa0834600 | Msa1356180 | 0.847505 | 1.108263e-59 | -8.615850e-47 |
| Msa0154240 | Msa1356180 | 0.812615 | 3.878010e-51 | -8.615850e-47 |
| Msa0379540 | Msa1356180 | 0.816204 | 6.239845e-52 | -8.615850e-47 |
| Msa0404220 | Msa1356180 | 0.811501 | 6.782826e-51 | -8.615850e-47 |
| Msa0475400 | Msa1356180 | 0.802252 | 6.126797e-49 | -8.615850e-47 |
| Msa0984000 | Msa1356180 | 0.800447 | 1.435388e-48 | -8.615850e-47 |
| Msa1047230 | Msa1356180 | 0.804305 | 2.302123e-49 | -8.615850e-47 |
| Msa1075590 | Msa1356180 | 0.802428 | 5.637769e-49 | -8.615850e-47 |
| Msa1176070 | Msa1356180 | 0.805837 | 1.100728e-49 | -8.615850e-47 |
| Msa0579340 | Msa1356180 | 0.806189 | 9.283274e-50 | -8.615850e-47 |
| Msa0579350 | Msa1356180 | 0.817884 | 2.615941e-52 | -8.615850e-47 |
| Msa0579360 | Msa1356180 | 0.810792 | 9.663261e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356180 | MtrunA17_Chr5g0400001 | 98.817 | 338 | 4 | 0 | 1 | 338 | 100 | 437 | 0.0 | 712 |
| Msa1356180 | MtrunA17_Chr5g0399991 | 98.225 | 338 | 6 | 0 | 1 | 338 | 102 | 439 | 0.0 | 711 |
| Msa1356180 | MtrunA17_Chr4g0055281 | 83.728 | 338 | 55 | 0 | 1 | 338 | 91 | 428 | 0.0 | 618 |
| Msa1356180 | MtrunA17_Chr6g0481031 | 66.077 | 339 | 114 | 1 | 1 | 338 | 119 | 457 | 1.83e-178 | 506 |
| Msa1356180 | MtrunA17_Chr4g0023601 | 55.015 | 329 | 144 | 3 | 11 | 338 | 36 | 361 | 1.47e-135 | 394 |
| Msa1356180 | MtrunA17_Chr2g0323051 | 55.455 | 330 | 142 | 4 | 11 | 338 | 109 | 435 | 4.17e-130 | 384 |
| Msa1356180 | MtrunA17_Chr8g0388651 | 51.327 | 339 | 162 | 3 | 3 | 338 | 94 | 432 | 7.63e-123 | 363 |
| Msa1356180 | MtrunA17_Chr7g0247631 | 52.532 | 316 | 145 | 4 | 15 | 329 | 292 | 603 | 1.97e-108 | 332 |
| Msa1356180 | MtrunA17_Chr2g0286431 | 43.713 | 334 | 183 | 1 | 5 | 338 | 101 | 429 | 2.29e-97 | 298 |
| Msa1356180 | MtrunA17_Chr5g0408851 | 43.425 | 327 | 180 | 4 | 4 | 329 | 234 | 556 | 3.25e-94 | 293 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356180 | AT4G17090.1 | 81.361 | 338 | 63 | 0 | 1 | 338 | 99 | 436 | 0.0 | 611 |
| Msa1356180 | AT3G23920.1 | 68.437 | 339 | 106 | 1 | 1 | 338 | 119 | 457 | 2.68e-180 | 511 |
| Msa1356180 | AT4G15210.2 | 53.754 | 333 | 149 | 4 | 9 | 339 | 35 | 364 | 2.40e-133 | 386 |
| Msa1356180 | AT4G15210.1 | 53.754 | 333 | 149 | 4 | 9 | 339 | 35 | 364 | 1.43e-132 | 387 |
| Msa1356180 | AT4G15210.3 | 54.459 | 314 | 139 | 3 | 27 | 339 | 1 | 311 | 6.37e-129 | 376 |
| Msa1356180 | AT4G15210.4 | 54.459 | 314 | 139 | 3 | 27 | 339 | 1 | 311 | 6.37e-129 | 376 |
| Msa1356180 | AT2G32290.1 | 53.605 | 319 | 143 | 4 | 23 | 339 | 113 | 428 | 2.76e-123 | 366 |
| Msa1356180 | AT4G00490.1 | 51.515 | 330 | 155 | 4 | 1 | 329 | 108 | 433 | 3.37e-117 | 349 |
| Msa1356180 | AT5G55700.1 | 46.491 | 342 | 176 | 2 | 4 | 338 | 112 | 453 | 1.13e-110 | 332 |
| Msa1356180 | AT2G45880.1 | 50.789 | 317 | 151 | 4 | 15 | 330 | 275 | 587 | 1.81e-106 | 327 |
| Msa1356180 | AT5G45300.2 | 44.688 | 320 | 172 | 4 | 3 | 321 | 268 | 583 | 3.95e-91 | 286 |
| Msa1356180 | AT5G45300.1 | 44.688 | 320 | 172 | 4 | 3 | 321 | 270 | 585 | 4.55e-91 | 286 |
| Msa1356180 | AT5G45300.3 | 44.688 | 320 | 172 | 4 | 3 | 321 | 284 | 599 | 4.65e-91 | 286 |
| Msa1356180 | AT5G55700.2 | 49.603 | 252 | 120 | 2 | 94 | 338 | 39 | 290 | 9.92e-85 | 261 |
| Msa1356180 | AT5G18670.1 | 41.538 | 325 | 182 | 2 | 5 | 329 | 104 | 420 | 7.28e-82 | 258 |
Find 136 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAGATTCACAGATTATT+TGG | 0.131732 | tig0015533:-4397 | Msa1356180:CDS |
| TTCCAAGTTCCTTCAGTTTC+AGG | 0.137478 | tig0015533:+3957 | Msa1356180:intergenic |
| CCAATGAATTCCAGCTATTT+TGG | 0.174268 | tig0015533:+3499 | Msa1356180:intergenic |
| AAGAAGTATATTGATTTATT+AGG | 0.226783 | tig0015533:-2934 | Msa1356180:three_prime_UTR |
| ATGGTCCTATGAAGTATAAT+TGG | 0.246951 | tig0015533:-4895 | Msa1356180:CDS |
| CTGGTTTACACAGACAAATT+AGG | 0.254676 | tig0015533:-4522 | Msa1356180:CDS |
| ACAGTATATGAGATCTTCTT+TGG | 0.254734 | tig0015533:-3756 | Msa1356180:intron |
| TGGACACATTAAAGCAATTA+AGG | 0.267776 | tig0015533:-3037 | Msa1356180:three_prime_UTR |
| ACTTGTTTGAAATATGCTTT+TGG | 0.284260 | tig0015533:+3538 | Msa1356180:intergenic |
| ACTTGGAAGTTTCCAGGAAT+TGG | 0.297749 | tig0015533:-3942 | Msa1356180:CDS |
| GGTTGATGCTTGGTGGGGTT+TGG | 0.299766 | tig0015533:-4927 | Msa1356180:CDS |
| TGAAGCAAAGGTTTGAATTT+CGG | 0.301327 | tig0015533:+5204 | Msa1356180:intergenic |
| GGTTGCTTGAGGGTGAAAAT+TGG | 0.313491 | tig0015533:-3149 | Msa1356180:three_prime_UTR |
| AATCAATTTCCTGAGGATAC+TGG | 0.317015 | tig0015533:-3665 | Msa1356180:CDS |
| GGAACATGGAACACAGAATA+TGG | 0.319253 | tig0015533:-3626 | Msa1356180:CDS |
| CTTTCAAAATCTGATTCATA+TGG | 0.321608 | tig0015533:-3075 | Msa1356180:three_prime_UTR |
| CACATATTTCATCATGTTGA+TGG | 0.322340 | tig0015533:-2972 | Msa1356180:three_prime_UTR |
| CATTGGAATTCTCCAATTCC+TGG | 0.333977 | tig0015533:+3930 | Msa1356180:intergenic |
| GAAGCATCAGCTGCAGCAAT+TGG | 0.348122 | tig0015533:-3734 | Msa1356180:CDS |
| ATGGAGATTTCTTCCTTGAT+TGG | 0.348721 | tig0015533:-3607 | Msa1356180:CDS |
| CATGGGTGCTTGAAGAAATA+AGG | 0.350399 | tig0015533:-4557 | Msa1356180:CDS |
| GAAATGTTGGTGACTCTTGC+AGG | 0.358515 | tig0015533:-4790 | Msa1356180:intron |
| TTTGCTAGCATTTGTGCTAT+TGG | 0.361586 | tig0015533:+3401 | Msa1356180:intergenic |
| GAAGGAACTTGGAAGTTTCC+AGG | 0.362863 | tig0015533:-3948 | Msa1356180:CDS |
| ACAGCCCAACGAGATGTATT+CGG | 0.366361 | tig0015533:+4488 | Msa1356180:intergenic |
| CAGGAAATTCAAGTGGGACT+TGG | 0.366525 | tig0015533:-4011 | Msa1356180:CDS |
| GATAGATTCACAGATTATTT+GGG | 0.369481 | tig0015533:-4396 | Msa1356180:CDS |
| AGCAATGAATGCTAGTTTGA+TGG | 0.376383 | tig0015533:-4981 | Msa1356180:CDS |
| AGATATGATTCAAGTGCTTA+TGG | 0.392336 | tig0015533:-3228 | Msa1356180:three_prime_UTR |
| TGGTTTACACAGACAAATTA+GGG | 0.392347 | tig0015533:-4521 | Msa1356180:CDS |
| AAACACCAACTCTGCAGTTA+AGG | 0.394173 | tig0015533:-5136 | Msa1356180:five_prime_UTR |
| CAGTTAAGGAAAACAAGAAA+TGG | 0.395175 | tig0015533:-5122 | Msa1356180:five_prime_UTR |
| AGCTGGAAGAACTCCTCTTC+AGG | 0.398700 | tig0015533:-4448 | Msa1356180:CDS |
| TCCCATTGTACCGTGTCTAA+TGG | 0.401367 | tig0015533:+5024 | Msa1356180:intergenic |
| TTGTCTGTGTAAACCAGCTC+AGG | 0.410476 | tig0015533:+4528 | Msa1356180:intergenic |
| CCAAAATAGCTGGAATTCAT+TGG | 0.410744 | tig0015533:-3499 | Msa1356180:CDS |
| GCTTCCCAATTATACTTCAT+AGG | 0.415265 | tig0015533:+4890 | Msa1356180:intergenic |
| CAGCCCAACGAGATGTATTC+GGG | 0.415616 | tig0015533:+4489 | Msa1356180:intergenic |
| TCCAAGTTCCTTCAGTTTCA+GGG | 0.423547 | tig0015533:+3958 | Msa1356180:intergenic |
| CTAGCATACCTTTACCTCCA+TGG | 0.426539 | tig0015533:-4575 | Msa1356180:intron |
| TTGAAGAGTGCTGGAGTTGA+AGG | 0.429269 | tig0015533:-4956 | Msa1356180:CDS |
| ACGGAAGCTTCTCATGTAAT+CGG | 0.432165 | tig0015533:+4419 | Msa1356180:intergenic |
| TCCACCAACATTATTGAGCT+TGG | 0.439989 | tig0015533:-2875 | Msa1356180:three_prime_UTR |
| GGAGTTCTTCCAGCTAGAAC+AGG | 0.442830 | tig0015533:+4456 | Msa1356180:intergenic |
| TGAAAATTGGAGGCAATTTG+TGG | 0.443560 | tig0015533:-3136 | Msa1356180:three_prime_UTR |
| CAGCAATTGGGAAGAAAGAA+TGG | 0.447375 | tig0015533:-3721 | Msa1356180:CDS |
| CCTTCAGTTTCAGGGTAAGA+TGG | 0.448441 | tig0015533:+3966 | Msa1356180:intergenic |
| TTTCACATGCATGGAAATGA+AGG | 0.453930 | tig0015533:-3360 | Msa1356180:CDS |
| AAACTATCTGCCAAAATAGC+TGG | 0.456022 | tig0015533:-3509 | Msa1356180:CDS |
| TATGGGACTGATCTTTATGT+TGG | 0.456464 | tig0015533:-3057 | Msa1356180:three_prime_UTR |
| TAGCATACCTTTACCTCCAT+GGG | 0.456896 | tig0015533:-4574 | Msa1356180:CDS |
| TTTGTACCTTGTCATAGCAT+TGG | 0.457100 | tig0015533:+3913 | Msa1356180:intergenic |
| GCCATTAGACACGGTACAAT+GGG | 0.457333 | tig0015533:-5025 | Msa1356180:exon |
| AAGATGGCAACCAAGATTGC+GGG | 0.457404 | tig0015533:-3282 | Msa1356180:three_prime_UTR |
| AAGTTCACCACCCGCAATCT+TGG | 0.459671 | tig0015533:+3272 | Msa1356180:intergenic |
| ATTGCGGGTGGTGAACTTGC+TGG | 0.464723 | tig0015533:-3267 | Msa1356180:three_prime_UTR |
| GATTCAGTGCCTGTTCTAGC+TGG | 0.467117 | tig0015533:-4465 | Msa1356180:CDS |
| TTGATGGCTTTGAAGAGTGC+TGG | 0.467245 | tig0015533:-4965 | Msa1356180:CDS |
| TCAAGCACCCATGGAGGTAA+AGG | 0.469083 | tig0015533:+4567 | Msa1356180:intergenic |
| AGTAATGGTTGATGCTTGGT+GGG | 0.476693 | tig0015533:-4933 | Msa1356180:CDS |
| CACTTGATTCACCAATCCTC+CGG | 0.478386 | tig0015533:+3305 | Msa1356180:intergenic |
| TTTCAAAATCTGATTCATAT+GGG | 0.479314 | tig0015533:-3074 | Msa1356180:three_prime_UTR |
| CTAATTGTTCACCGGAGGAT+TGG | 0.479749 | tig0015533:-3316 | Msa1356180:CDS |
| TGGTCCTATGAAGTATAATT+GGG | 0.480087 | tig0015533:-4894 | Msa1356180:CDS |
| CTTATTTCTTCAAGCACCCA+TGG | 0.485962 | tig0015533:+4558 | Msa1356180:intergenic |
| TATACTAAATTTCACATGCA+TGG | 0.487819 | tig0015533:-3369 | Msa1356180:CDS |
| ACCCTGAAACTGAAGGAACT+TGG | 0.488235 | tig0015533:-3959 | Msa1356180:CDS |
| AAAAGCATATTTCAAACAAG+TGG | 0.507306 | tig0015533:-3536 | Msa1356180:CDS |
| GAGTAATGGTTGATGCTTGG+TGG | 0.507394 | tig0015533:-4934 | Msa1356180:CDS |
| AGTTAAGGAAAACAAGAAAT+GGG | 0.509470 | tig0015533:-5121 | Msa1356180:five_prime_UTR |
| CATCAATGTGGTGGAAATGT+TGG | 0.516528 | tig0015533:-4803 | Msa1356180:CDS |
| TTATGCTGAGCTTGTTCAGA+TGG | 0.518500 | tig0015533:-4867 | Msa1356180:CDS |
| AGCAATTGGGAAGAAAGAAT+GGG | 0.525174 | tig0015533:-3720 | Msa1356180:CDS |
| GTAATGGTTGATGCTTGGTG+GGG | 0.525670 | tig0015533:-4932 | Msa1356180:CDS |
| AATCCCGAATACATCTCGTT+GGG | 0.532457 | tig0015533:-4492 | Msa1356180:CDS |
| AAGCATCAGCTGCAGCAATT+GGG | 0.535892 | tig0015533:-3733 | Msa1356180:CDS |
| ATTGTATTGACCTGAGTCAT+GGG | 0.537737 | tig0015533:+3685 | Msa1356180:intergenic |
| TTTCGGACAAGAAACTTTGT+CGG | 0.539192 | tig0015533:+5221 | Msa1356180:intergenic |
| ATAAACAAGAGGTTGCTTGA+GGG | 0.540389 | tig0015533:-3159 | Msa1356180:three_prime_UTR |
| TGCTTGAGGGTGAAAATTGG+AGG | 0.540642 | tig0015533:-3146 | Msa1356180:three_prime_UTR |
| ATTGGTGAATCAAGTGAAGA+TGG | 0.545137 | tig0015533:-3298 | Msa1356180:exon |
| ACCAAGCTCAATAATGTTGG+TGG | 0.545662 | tig0015533:+2874 | Msa1356180:intergenic |
| TGCTGGAGTTGAAGGAGTAA+TGG | 0.546595 | tig0015533:-4948 | Msa1356180:CDS |
| GTTTGCTTGAGTACCAATCA+AGG | 0.552816 | tig0015533:+3594 | Msa1356180:intergenic |
| CTTATTTAAGAATAAACAAG+AGG | 0.556225 | tig0015533:-3170 | Msa1356180:three_prime_UTR |
| TATAACACAAGGTTTCATGA+TGG | 0.559816 | tig0015533:-3431 | Msa1356180:CDS |
| CTGCAGGTTACTATAACACA+AGG | 0.561651 | tig0015533:-3442 | Msa1356180:CDS |
| AAGGAGTAATGGTTGATGCT+TGG | 0.565190 | tig0015533:-4937 | Msa1356180:CDS |
| GAATCCCGAATACATCTCGT+TGG | 0.567655 | tig0015533:-4493 | Msa1356180:CDS |
| TTGCCATGCTAATTGTTCAC+CGG | 0.569138 | tig0015533:-3324 | Msa1356180:CDS |
| ACACAGACAAATTAGGGAGG+AGG | 0.571216 | tig0015533:-4515 | Msa1356180:CDS |
| GATTGTATTGACCTGAGTCA+TGG | 0.571442 | tig0015533:+3684 | Msa1356180:intergenic |
| CACACCAAGCTCAATAATGT+TGG | 0.572891 | tig0015533:+2871 | Msa1356180:intergenic |
| AATAAACAAGAGGTTGCTTG+AGG | 0.573981 | tig0015533:-3160 | Msa1356180:three_prime_UTR |
| AAGTGGGACTTGGTCCATGT+GGG | 0.575092 | tig0015533:-4001 | Msa1356180:CDS |
| AATAAGGAAGAACCCTGAGC+TGG | 0.576300 | tig0015533:-4541 | Msa1356180:CDS |
| TGCCATTAGACACGGTACAA+TGG | 0.576857 | tig0015533:-5026 | Msa1356180:exon |
| TTTGCTTTGAGATGAAGCAA+AGG | 0.577596 | tig0015533:+5192 | Msa1356180:intergenic |
| TAATCGGAGTAGACCTGAAG+AGG | 0.578784 | tig0015533:+4435 | Msa1356180:intergenic |
| TGCTGACTCAAATAGAGTAC+CGG | 0.579953 | tig0015533:-5061 | Msa1356180:five_prime_UTR |
| CAAGTGGGACTTGGTCCATG+TGG | 0.580992 | tig0015533:-4002 | Msa1356180:CDS |
| GCACAAATGCTAGCAAAACA+TGG | 0.581514 | tig0015533:-3395 | Msa1356180:CDS |
| AATAATCTGTGAATCTATCA+CGG | 0.584013 | tig0015533:+4400 | Msa1356180:intergenic |
| GAAGATGGCAACCAAGATTG+CGG | 0.585914 | tig0015533:-3283 | Msa1356180:three_prime_UTR |
| CATGCAACTGAATTAACTGC+AGG | 0.589620 | tig0015533:-3458 | Msa1356180:CDS |
| AAGAAAGAATGGGGAACAAG+TGG | 0.590370 | tig0015533:-3710 | Msa1356180:CDS |
| ATGTTGATGGATCATGTGTA+TGG | 0.592754 | tig0015533:-2959 | Msa1356180:three_prime_UTR |
| TTGTTTGCAGGAAATTCAAG+TGG | 0.593690 | tig0015533:-4018 | Msa1356180:intron |
| ACAAGTGGACCCCATGACTC+AGG | 0.595412 | tig0015533:-3695 | Msa1356180:CDS |
| CCATCTTACCCTGAAACTGA+AGG | 0.596657 | tig0015533:-3966 | Msa1356180:CDS |
| GGATATCTCAACTCCCCACA+TGG | 0.597220 | tig0015533:+3987 | Msa1356180:intergenic |
| AGTGGGACTTGGTCCATGTG+GGG | 0.599653 | tig0015533:-4000 | Msa1356180:CDS |
| CCATGCTAATTGTTCACCGG+AGG | 0.601473 | tig0015533:-3321 | Msa1356180:CDS |
| TTTGTTGTGAGTATGTCTGA+TGG | 0.609724 | tig0015533:-3111 | Msa1356180:three_prime_UTR |
| ACTTGCTGGTGAGAATGCAT+TGG | 0.612219 | tig0015533:-3253 | Msa1356180:three_prime_UTR |
| TCAAGCAAACTTGTTGAACA+TGG | 0.618498 | tig0015533:-3581 | Msa1356180:CDS |
| GTTGTGAGTATGTCTGATGG+TGG | 0.636973 | tig0015533:-3108 | Msa1356180:three_prime_UTR |
| GGTGAACAATTAGCATGGCA+AGG | 0.637345 | tig0015533:+3326 | Msa1356180:intergenic |
| TGTTTGCAGGAAATTCAAGT+GGG | 0.637360 | tig0015533:-4017 | Msa1356180:intron |
| TGTCTGTGTAAACCAGCTCA+GGG | 0.638501 | tig0015533:+4529 | Msa1356180:intergenic |
| ATTAGACACGGTACAATGGG+AGG | 0.641924 | tig0015533:-5022 | Msa1356180:exon |
| TCGTGGTTATGAACAATCGA+TGG | 0.648491 | tig0015533:+5084 | Msa1356180:intergenic |
| CCTCCGGTGAACAATTAGCA+TGG | 0.651855 | tig0015533:+3321 | Msa1356180:intergenic |
| ATATATCTATTCTAGACACT+AGG | 0.656186 | tig0015533:+2835 | Msa1356180:intergenic |
| AATGGCAACATCACAAACAC+CGG | 0.660873 | tig0015533:+5042 | Msa1356180:intergenic |
| TTGTATTGACCTGAGTCATG+GGG | 0.665755 | tig0015533:+3686 | Msa1356180:intergenic |
| ATGGCAACCAAGATTGCGGG+TGG | 0.673251 | tig0015533:-3279 | Msa1356180:three_prime_UTR |
| GCAAGAAACACATTTCACAA+AGG | 0.674864 | tig0015533:-5160 | Msa1356180:five_prime_UTR |
| TCAATACAATCAATTTCCTG+AGG | 0.679778 | tig0015533:-3672 | Msa1356180:CDS |
| ATTTCTTCAAGCACCCATGG+AGG | 0.686996 | tig0015533:+4561 | Msa1356180:intergenic |
| AGAATTCCAATGCTATGACA+AGG | 0.689937 | tig0015533:-3919 | Msa1356180:intron |
| GCAATTGGGAAGAAAGAATG+GGG | 0.692825 | tig0015533:-3719 | Msa1356180:CDS |
| TGTCTGATGGTGGTAAACCA+AGG | 0.696376 | tig0015533:-3098 | Msa1356180:three_prime_UTR |
| TGTGATGTTGCCATTAGACA+CGG | 0.699044 | tig0015533:-5034 | Msa1356180:five_prime_UTR |
| CTCTATTTGAGTCAGCATCG+TGG | 0.708875 | tig0015533:+5067 | Msa1356180:intergenic |
| TTTACACAGACAAATTAGGG+AGG | 0.734523 | tig0015533:-4518 | Msa1356180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTATCATATTTTTTATTTT+TGG | + | tig0015533:3526-3545 | Msa1356180:intergenic | 10.0% |
| !! | AATTAAGAATTTAATATACT+TGG | - | tig0015533:3826-3845 | Msa1356180:intron | 10.0% |
| !!! | TGTTTCTTTTTTATTAATGA+AGG | + | tig0015533:2870-2889 | Msa1356180:intergenic | 15.0% |
| !!! | AAGAAGTATATTGATTTATT+AGG | - | tig0015533:5209-5228 | Msa1356180:five_prime_UTR | 15.0% |
| !! | ACATTCAATTTGTCATATTA+AGG | - | tig0015533:4001-4020 | Msa1356180:CDS | 20.0% |
| !!! | TGTTTGAAAATAAGTCATTT+TGG | + | tig0015533:4370-4389 | Msa1356180:intergenic | 20.0% |
| !! | CTTATTTAAGAATAAACAAG+AGG | - | tig0015533:4973-4992 | Msa1356180:CDS | 20.0% |
| !! | TTTCAAAATCTGATTCATAT+GGG | - | tig0015533:5069-5088 | Msa1356180:five_prime_UTR | 20.0% |
| !!! | ATTAGGTTTTCTATATTTGT+TGG | - | tig0015533:5226-5245 | Msa1356180:five_prime_UTR | 20.0% |
| !!! | TTAGGTTTTCTATATTTGTT+GGG | - | tig0015533:5227-5246 | Msa1356180:five_prime_UTR | 20.0% |
| ! | AGTTAAGGAAAACAAGAAAT+GGG | - | tig0015533:3022-3041 | Msa1356180:three_prime_UTR | 25.0% |
| ! | TAATATTCAACCACCAATTT+AGG | - | tig0015533:3403-3422 | Msa1356180:CDS | 25.0% |
| ! | AATAATCTGTGAATCTATCA+CGG | + | tig0015533:3746-3765 | Msa1356180:intergenic | 25.0% |
| ! | TGATAGATTCACAGATTATT+TGG | - | tig0015533:3746-3765 | Msa1356180:CDS | 25.0% |
| ! | GATAGATTCACAGATTATTT+GGG | - | tig0015533:3747-3766 | Msa1356180:CDS | 25.0% |
| !! | GTCTAACATCAATATGATTT+TGG | + | tig0015533:4292-4311 | Msa1356180:intergenic | 25.0% |
| !!! | ACTTGTTTGAAATATGCTTT+TGG | + | tig0015533:4608-4627 | Msa1356180:intergenic | 25.0% |
| !! | AAAAGCATATTTCAAACAAG+TGG | - | tig0015533:4607-4626 | Msa1356180:intron | 25.0% |
| ! | TATACTAAATTTCACATGCA+TGG | - | tig0015533:4774-4793 | Msa1356180:intron | 25.0% |
| ! | CTTTCAAAATCTGATTCATA+TGG | - | tig0015533:5068-5087 | Msa1356180:five_prime_UTR | 25.0% |
| ! | ATATATCTATTCTAGACACT+AGG | + | tig0015533:5311-5330 | Msa1356180:intergenic | 25.0% |
| AGTAGAGCAAACACTAAAAA+TGG | - | tig0015533:2820-2839 | Msa1356180:three_prime_UTR | 30.0% | |
| TGAAGCAAAGGTTTGAATTT+CGG | + | tig0015533:2942-2961 | Msa1356180:intergenic | 30.0% | |
| CAGTTAAGGAAAACAAGAAA+TGG | - | tig0015533:3021-3040 | Msa1356180:three_prime_UTR | 30.0% | |
| ATGGTCCTATGAAGTATAAT+TGG | - | tig0015533:3248-3267 | Msa1356180:three_prime_UTR | 30.0% | |
| TGGTCCTATGAAGTATAATT+GGG | - | tig0015533:3249-3268 | Msa1356180:three_prime_UTR | 30.0% | |
| ACACTAAATAGAGCCTAAAT+TGG | + | tig0015533:3419-3438 | Msa1356180:intergenic | 30.0% | |
| TGGTTTACACAGACAAATTA+GGG | - | tig0015533:3622-3641 | Msa1356180:CDS | 30.0% | |
| ! | ATTTTCAACGAATCAATGTG+TGG | + | tig0015533:3907-3926 | Msa1356180:intergenic | 30.0% |
| ATATTAAGGATAGTTGCAAG+AGG | - | tig0015533:4015-4034 | Msa1356180:intron | 30.0% | |
| !! | TTGCAAGAGGAATACTTTTT+AGG | - | tig0015533:4028-4047 | Msa1356180:intron | 30.0% |
| !! | TGCAAGAGGAATACTTTTTA+GGG | - | tig0015533:4029-4048 | Msa1356180:intron | 30.0% |
| ATTAAGACCAAATTGTTTGC+AGG | - | tig0015533:4113-4132 | Msa1356180:intron | 30.0% | |
| TGAATTTCCTGCAAACAATT+TGG | + | tig0015533:4123-4142 | Msa1356180:intergenic | 30.0% | |
| ACAGTATATGAGATCTTCTT+TGG | - | tig0015533:4387-4406 | Msa1356180:CDS | 30.0% | |
| TCAATACAATCAATTTCCTG+AGG | - | tig0015533:4471-4490 | Msa1356180:CDS | 30.0% | |
| !! | AGGATACTGGATTTTTCAAA+AGG | - | tig0015533:4491-4510 | Msa1356180:CDS | 30.0% |
| !! | GGATACTGGATTTTTCAAAA+GGG | - | tig0015533:4492-4511 | Msa1356180:CDS | 30.0% |
| TATAACACAAGGTTTCATGA+TGG | - | tig0015533:4712-4731 | Msa1356180:intron | 30.0% | |
| AGATATGATTCAAGTGCTTA+TGG | - | tig0015533:4915-4934 | Msa1356180:CDS | 30.0% | |
| TGGACACATTAAAGCAATTA+AGG | - | tig0015533:5106-5125 | Msa1356180:five_prime_UTR | 30.0% | |
| CACATATTTCATCATGTTGA+TGG | - | tig0015533:5171-5190 | Msa1356180:five_prime_UTR | 30.0% | |
| TTTCGGACAAGAAACTTTGT+CGG | + | tig0015533:2925-2944 | Msa1356180:intergenic | 35.0% | |
| !! | TTTGCTTTGAGATGAAGCAA+AGG | + | tig0015533:2954-2973 | Msa1356180:intergenic | 35.0% |
| GCAAGAAACACATTTCACAA+AGG | - | tig0015533:2983-3002 | Msa1356180:three_prime_UTR | 35.0% | |
| ! | AGCAATGAATGCTAGTTTGA+TGG | - | tig0015533:3162-3181 | Msa1356180:three_prime_UTR | 35.0% |
| GCTTCCCAATTATACTTCAT+AGG | + | tig0015533:3256-3275 | Msa1356180:intergenic | 35.0% | |
| GTTCAGATGGTACAAAAACA+TGG | - | tig0015533:3289-3308 | Msa1356180:three_prime_UTR | 35.0% | |
| ! | GTCATGTCTTTTCATCAATG+TGG | - | tig0015533:3328-3347 | Msa1356180:CDS | 35.0% |
| ! | ATGTCTTTTCATCAATGTGG+TGG | - | tig0015533:3331-3350 | Msa1356180:CDS | 35.0% |
| CTAAATAGAGCCTAAATTGG+TGG | + | tig0015533:3416-3435 | Msa1356180:intergenic | 35.0% | |
| CTGGTTTACACAGACAAATT+AGG | - | tig0015533:3621-3640 | Msa1356180:CDS | 35.0% | |
| TTTACACAGACAAATTAGGG+AGG | - | tig0015533:3625-3644 | Msa1356180:CDS | 35.0% | |
| CATAGTAAGTTTCACCAACT+TGG | - | tig0015533:3779-3798 | Msa1356180:intron | 35.0% | |
| !! | ACCAACTTGGTCTTCAATTT+TGG | - | tig0015533:3792-3811 | Msa1356180:intron | 35.0% |
| !! | CCAACTTGGTCTTCAATTTT+GGG | - | tig0015533:3793-3812 | Msa1356180:intron | 35.0% |
| !! | CAACTTGGTCTTCAATTTTG+GGG | - | tig0015533:3794-3813 | Msa1356180:intron | 35.0% |
| !!! | TCTTCAATTTTGGGGTTACT+TGG | - | tig0015533:3802-3821 | Msa1356180:intron | 35.0% |
| ACTAAGACTTGATGCACATT+TGG | - | tig0015533:4072-4091 | Msa1356180:intron | 35.0% | |
| TTGTTTGCAGGAAATTCAAG+TGG | - | tig0015533:4125-4144 | Msa1356180:intron | 35.0% | |
| TGTTTGCAGGAAATTCAAGT+GGG | - | tig0015533:4126-4145 | Msa1356180:intron | 35.0% | |
| AGAATTCCAATGCTATGACA+AGG | - | tig0015533:4224-4243 | Msa1356180:intron | 35.0% | |
| TTTGTACCTTGTCATAGCAT+TGG | + | tig0015533:4233-4252 | Msa1356180:intergenic | 35.0% | |
| AGCAATTGGGAAGAAAGAAT+GGG | - | tig0015533:4423-4442 | Msa1356180:CDS | 35.0% | |
| ! | ATTGTATTGACCTGAGTCAT+GGG | + | tig0015533:4461-4480 | Msa1356180:intergenic | 35.0% |
| AATCAATTTCCTGAGGATAC+TGG | - | tig0015533:4478-4497 | Msa1356180:CDS | 35.0% | |
| TTGAAAAATCCAGTATCCTC+AGG | + | tig0015533:4490-4509 | Msa1356180:intergenic | 35.0% | |
| !! | ACTGGATTTTTCAAAAGGGA+TGG | - | tig0015533:4496-4515 | Msa1356180:CDS | 35.0% |
| ! | TTTTCAAAAGGGATGGAACA+TGG | - | tig0015533:4503-4522 | Msa1356180:CDS | 35.0% |
| ATGGAGATTTCTTCCTTGAT+TGG | - | tig0015533:4536-4555 | Msa1356180:CDS | 35.0% | |
| !! | TCAAGCAAACTTGTTGAACA+TGG | - | tig0015533:4562-4581 | Msa1356180:CDS | 35.0% |
| !! | ATATGCTTTTGGCTGATACT+AGG | + | tig0015533:4597-4616 | Msa1356180:intergenic | 35.0% |
| AAACTATCTGCCAAAATAGC+TGG | - | tig0015533:4634-4653 | Msa1356180:intron | 35.0% | |
| ! | CCAATGAATTCCAGCTATTT+TGG | + | tig0015533:4647-4666 | Msa1356180:intergenic | 35.0% |
| CCAAAATAGCTGGAATTCAT+TGG | - | tig0015533:4644-4663 | Msa1356180:intron | 35.0% | |
| TTTGCTAGCATTTGTGCTAT+TGG | + | tig0015533:4745-4764 | Msa1356180:intergenic | 35.0% | |
| TTTCACATGCATGGAAATGA+AGG | - | tig0015533:4783-4802 | Msa1356180:intron | 35.0% | |
| ATTGGTGAATCAAGTGAAGA+TGG | - | tig0015533:4845-4864 | Msa1356180:CDS | 35.0% | |
| AATAAACAAGAGGTTGCTTG+AGG | - | tig0015533:4983-5002 | Msa1356180:CDS | 35.0% | |
| ATAAACAAGAGGTTGCTTGA+GGG | - | tig0015533:4984-5003 | Msa1356180:CDS | 35.0% | |
| TGAAAATTGGAGGCAATTTG+TGG | - | tig0015533:5007-5026 | Msa1356180:CDS | 35.0% | |
| ! | TTTGTTGTGAGTATGTCTGA+TGG | - | tig0015533:5032-5051 | Msa1356180:five_prime_UTR | 35.0% |
| !! | GAATCAGATTTTGAAAGCCT+TGG | + | tig0015533:5065-5084 | Msa1356180:intergenic | 35.0% |
| TATGGGACTGATCTTTATGT+TGG | - | tig0015533:5086-5105 | Msa1356180:five_prime_UTR | 35.0% | |
| ! | ATGTTGATGGATCATGTGTA+TGG | - | tig0015533:5184-5203 | Msa1356180:five_prime_UTR | 35.0% |
| AAACACCAACTCTGCAGTTA+AGG | - | tig0015533:3007-3026 | Msa1356180:three_prime_UTR | 40.0% | |
| ! | GTTTTCCTTAACTGCAGAGT+TGG | + | tig0015533:3015-3034 | Msa1356180:intergenic | 40.0% |
| TCGTGGTTATGAACAATCGA+TGG | + | tig0015533:3062-3081 | Msa1356180:intergenic | 40.0% | |
| !! | TGCTGACTCAAATAGAGTAC+CGG | - | tig0015533:3082-3101 | Msa1356180:three_prime_UTR | 40.0% |
| AATGGCAACATCACAAACAC+CGG | + | tig0015533:3104-3123 | Msa1356180:intergenic | 40.0% | |
| TGTGATGTTGCCATTAGACA+CGG | - | tig0015533:3109-3128 | Msa1356180:three_prime_UTR | 40.0% | |
| ! | AAGGAGTAATGGTTGATGCT+TGG | - | tig0015533:3206-3225 | Msa1356180:three_prime_UTR | 40.0% |
| ! | AGTAATGGTTGATGCTTGGT+GGG | - | tig0015533:3210-3229 | Msa1356180:three_prime_UTR | 40.0% |
| ! | TGGGGTTTGGTTGAAAAAGA+TGG | - | tig0015533:3229-3248 | Msa1356180:three_prime_UTR | 40.0% |
| ! | TTATGCTGAGCTTGTTCAGA+TGG | - | tig0015533:3276-3295 | Msa1356180:three_prime_UTR | 40.0% |
| ! | CATCAATGTGGTGGAAATGT+TGG | - | tig0015533:3340-3359 | Msa1356180:CDS | 40.0% |
| TAGCATACCTTTACCTCCAT+GGG | - | tig0015533:3569-3588 | Msa1356180:CDS | 40.0% | |
| ! | CTTATTTCTTCAAGCACCCA+TGG | + | tig0015533:3588-3607 | Msa1356180:intergenic | 40.0% |
| CATGGGTGCTTGAAGAAATA+AGG | - | tig0015533:3586-3605 | Msa1356180:CDS | 40.0% | |
| AATCCCGAATACATCTCGTT+GGG | - | tig0015533:3651-3670 | Msa1356180:CDS | 40.0% | |
| ACGGAAGCTTCTCATGTAAT+CGG | + | tig0015533:3727-3746 | Msa1356180:intergenic | 40.0% | |
| CCCAAAATTGAAGACCAAGT+TGG | + | tig0015533:3796-3815 | Msa1356180:intergenic | 40.0% | |
| TCCAAGTTCCTTCAGTTTCA+GGG | + | tig0015533:4188-4207 | Msa1356180:intergenic | 40.0% | |
| TTCCAAGTTCCTTCAGTTTC+AGG | + | tig0015533:4189-4208 | Msa1356180:intergenic | 40.0% | |
| ACTTGGAAGTTTCCAGGAAT+TGG | - | tig0015533:4201-4220 | Msa1356180:intron | 40.0% | |
| CATTGGAATTCTCCAATTCC+TGG | + | tig0015533:4216-4235 | Msa1356180:intergenic | 40.0% | |
| CAGCAATTGGGAAGAAAGAA+TGG | - | tig0015533:4422-4441 | Msa1356180:CDS | 40.0% | |
| GCAATTGGGAAGAAAGAATG+GGG | - | tig0015533:4424-4443 | Msa1356180:CDS | 40.0% | |
| AAGAAAGAATGGGGAACAAG+TGG | - | tig0015533:4433-4452 | Msa1356180:CDS | 40.0% | |
| ! | TTGTATTGACCTGAGTCATG+GGG | + | tig0015533:4460-4479 | Msa1356180:intergenic | 40.0% |
| ! | GATTGTATTGACCTGAGTCA+TGG | + | tig0015533:4462-4481 | Msa1356180:intergenic | 40.0% |
| GGAACATGGAACACAGAATA+TGG | - | tig0015533:4517-4536 | Msa1356180:CDS | 40.0% | |
| GTTTGCTTGAGTACCAATCA+AGG | + | tig0015533:4552-4571 | Msa1356180:intergenic | 40.0% | |
| CATGCAACTGAATTAACTGC+AGG | - | tig0015533:4685-4704 | Msa1356180:intron | 40.0% | |
| CTGCAGGTTACTATAACACA+AGG | - | tig0015533:4701-4720 | Msa1356180:intron | 40.0% | |
| GCACAAATGCTAGCAAAACA+TGG | - | tig0015533:4748-4767 | Msa1356180:intron | 40.0% | |
| TTGCCATGCTAATTGTTCAC+CGG | - | tig0015533:4819-4838 | Msa1356180:CDS | 40.0% | |
| !! | GGTCAAGTTTTGTCAACAAG+TGG | - | tig0015533:4936-4955 | Msa1356180:CDS | 40.0% |
| TCCACCAACATTATTGAGCT+TGG | - | tig0015533:5268-5287 | Msa1356180:five_prime_UTR | 40.0% | |
| ACCAAGCTCAATAATGTTGG+TGG | + | tig0015533:5272-5291 | Msa1356180:intergenic | 40.0% | |
| CACACCAAGCTCAATAATGT+TGG | + | tig0015533:5275-5294 | Msa1356180:intergenic | 40.0% | |
| CTCTATTTGAGTCAGCATCG+TGG | + | tig0015533:3079-3098 | Msa1356180:intergenic | 45.0% | |
| TGCCATTAGACACGGTACAA+TGG | - | tig0015533:3117-3136 | Msa1356180:three_prime_UTR | 45.0% | |
| GCCATTAGACACGGTACAAT+GGG | - | tig0015533:3118-3137 | Msa1356180:three_prime_UTR | 45.0% | |
| TCCCATTGTACCGTGTCTAA+TGG | + | tig0015533:3122-3141 | Msa1356180:intergenic | 45.0% | |
| ATTAGACACGGTACAATGGG+AGG | - | tig0015533:3121-3140 | Msa1356180:three_prime_UTR | 45.0% | |
| !! | TTGATGGCTTTGAAGAGTGC+TGG | - | tig0015533:3178-3197 | Msa1356180:three_prime_UTR | 45.0% |
| !! | TTGAAGAGTGCTGGAGTTGA+AGG | - | tig0015533:3187-3206 | Msa1356180:three_prime_UTR | 45.0% |
| TGCTGGAGTTGAAGGAGTAA+TGG | - | tig0015533:3195-3214 | Msa1356180:three_prime_UTR | 45.0% | |
| ! | GAGTAATGGTTGATGCTTGG+TGG | - | tig0015533:3209-3228 | Msa1356180:three_prime_UTR | 45.0% |
| ! | GTAATGGTTGATGCTTGGTG+GGG | - | tig0015533:3211-3230 | Msa1356180:three_prime_UTR | 45.0% |
| !! | GAAATGTTGGTGACTCTTGC+AGG | - | tig0015533:3353-3372 | Msa1356180:CDS | 45.0% |
| CTAGCATACCTTTACCTCCA+TGG | - | tig0015533:3568-3587 | Msa1356180:CDS | 45.0% | |
| ATTTCTTCAAGCACCCATGG+AGG | + | tig0015533:3585-3604 | Msa1356180:intergenic | 45.0% | |
| AATAAGGAAGAACCCTGAGC+TGG | - | tig0015533:3602-3621 | Msa1356180:CDS | 45.0% | |
| TGTCTGTGTAAACCAGCTCA+GGG | + | tig0015533:3617-3636 | Msa1356180:intergenic | 45.0% | |
| TTGTCTGTGTAAACCAGCTC+AGG | + | tig0015533:3618-3637 | Msa1356180:intergenic | 45.0% | |
| ACACAGACAAATTAGGGAGG+AGG | - | tig0015533:3628-3647 | Msa1356180:CDS | 45.0% | |
| GAATCCCGAATACATCTCGT+TGG | - | tig0015533:3650-3669 | Msa1356180:CDS | 45.0% | |
| ACAGCCCAACGAGATGTATT+CGG | + | tig0015533:3658-3677 | Msa1356180:intergenic | 45.0% | |
| TAATCGGAGTAGACCTGAAG+AGG | + | tig0015533:3711-3730 | Msa1356180:intergenic | 45.0% | |
| CAGGAAATTCAAGTGGGACT+TGG | - | tig0015533:4132-4151 | Msa1356180:intron | 45.0% | |
| CCTTCAGTTTCAGGGTAAGA+TGG | + | tig0015533:4180-4199 | Msa1356180:intergenic | 45.0% | |
| CCATCTTACCCTGAAACTGA+AGG | - | tig0015533:4177-4196 | Msa1356180:intron | 45.0% | |
| ACCCTGAAACTGAAGGAACT+TGG | - | tig0015533:4184-4203 | Msa1356180:intron | 45.0% | |
| GAAGGAACTTGGAAGTTTCC+AGG | - | tig0015533:4195-4214 | Msa1356180:intron | 45.0% | |
| AAGCATCAGCTGCAGCAATT+GGG | - | tig0015533:4410-4429 | Msa1356180:CDS | 45.0% | |
| GGTGAACAATTAGCATGGCA+AGG | + | tig0015533:4820-4839 | Msa1356180:intergenic | 45.0% | |
| CTAATTGTTCACCGGAGGAT+TGG | - | tig0015533:4827-4846 | Msa1356180:CDS | 45.0% | |
| CACTTGATTCACCAATCCTC+CGG | + | tig0015533:4841-4860 | Msa1356180:intergenic | 45.0% | |
| GAAGATGGCAACCAAGATTG+CGG | - | tig0015533:4860-4879 | Msa1356180:CDS | 45.0% | |
| AAGATGGCAACCAAGATTGC+GGG | - | tig0015533:4861-4880 | Msa1356180:CDS | 45.0% | |
| ! | ACTTGCTGGTGAGAATGCAT+TGG | - | tig0015533:4890-4909 | Msa1356180:CDS | 45.0% |
| GGTTGCTTGAGGGTGAAAAT+TGG | - | tig0015533:4994-5013 | Msa1356180:CDS | 45.0% | |
| TGCTTGAGGGTGAAAATTGG+AGG | - | tig0015533:4997-5016 | Msa1356180:CDS | 45.0% | |
| GTTGTGAGTATGTCTGATGG+TGG | - | tig0015533:5035-5054 | Msa1356180:five_prime_UTR | 45.0% | |
| !! | TGTCTGATGGTGGTAAACCA+AGG | - | tig0015533:5045-5064 | Msa1356180:five_prime_UTR | 45.0% |
| TCAAGCACCCATGGAGGTAA+AGG | + | tig0015533:3579-3598 | Msa1356180:intergenic | 50.0% | |
| CAGCCCAACGAGATGTATTC+GGG | + | tig0015533:3657-3676 | Msa1356180:intergenic | 50.0% | |
| GATTCAGTGCCTGTTCTAGC+TGG | - | tig0015533:3678-3697 | Msa1356180:CDS | 50.0% | |
| GGAGTTCTTCCAGCTAGAAC+AGG | + | tig0015533:3690-3709 | Msa1356180:intergenic | 50.0% | |
| AGCTGGAAGAACTCCTCTTC+AGG | - | tig0015533:3695-3714 | Msa1356180:CDS | 50.0% | |
| ! | AAGTGGGACTTGGTCCATGT+GGG | - | tig0015533:4142-4161 | Msa1356180:intron | 50.0% |
| GGATATCTCAACTCCCCACA+TGG | + | tig0015533:4159-4178 | Msa1356180:intergenic | 50.0% | |
| ! | GAAGCATCAGCTGCAGCAAT+TGG | - | tig0015533:4409-4428 | Msa1356180:CDS | 50.0% |
| CCTCCGGTGAACAATTAGCA+TGG | + | tig0015533:4825-4844 | Msa1356180:intergenic | 50.0% | |
| CCATGCTAATTGTTCACCGG+AGG | - | tig0015533:4822-4841 | Msa1356180:CDS | 50.0% | |
| AAGTTCACCACCCGCAATCT+TGG | + | tig0015533:4874-4893 | Msa1356180:intergenic | 50.0% | |
| ! | GGTTGATGCTTGGTGGGGTT+TGG | - | tig0015533:3216-3235 | Msa1356180:three_prime_UTR | 55.0% |
| ! | CAAGTGGGACTTGGTCCATG+TGG | - | tig0015533:4141-4160 | Msa1356180:intron | 55.0% |
| ! | AGTGGGACTTGGTCCATGTG+GGG | - | tig0015533:4143-4162 | Msa1356180:intron | 55.0% |
| ACAAGTGGACCCCATGACTC+AGG | - | tig0015533:4448-4467 | Msa1356180:CDS | 55.0% | |
| ATGGCAACCAAGATTGCGGG+TGG | - | tig0015533:4864-4883 | Msa1356180:CDS | 55.0% | |
| ATTGCGGGTGGTGAACTTGC+TGG | - | tig0015533:4876-4895 | Msa1356180:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0015533 | gene | 2811 | 5354 | 2811 | ID=Msa1356180;Name=Msa1356180 |
| tig0015533 | mRNA | 2811 | 5354 | 2811 | ID=Msa1356180-mRNA-1;Parent=Msa1356180;Name=Msa1356180-mRNA-1;_AED=0.06;_eAED=0.06;_QI=325|1|1|1|1|1|4|502|340 |
| tig0015533 | exon | 2811 | 3774 | 2811 | ID=Msa1356180-mRNA-1:exon:9781;Parent=Msa1356180-mRNA-1 |
| tig0015533 | exon | 3920 | 4030 | 3920 | ID=Msa1356180-mRNA-1:exon:9780;Parent=Msa1356180-mRNA-1 |
| tig0015533 | exon | 4383 | 4593 | 4383 | ID=Msa1356180-mRNA-1:exon:9779;Parent=Msa1356180-mRNA-1 |
| tig0015533 | exon | 4791 | 5354 | 4791 | ID=Msa1356180-mRNA-1:exon:9778;Parent=Msa1356180-mRNA-1 |
| tig0015533 | five_prime_UTR | 5030 | 5354 | 5030 | ID=Msa1356180-mRNA-1:five_prime_utr;Parent=Msa1356180-mRNA-1 |
| tig0015533 | CDS | 4791 | 5029 | 4791 | ID=Msa1356180-mRNA-1:cds;Parent=Msa1356180-mRNA-1 |
| tig0015533 | CDS | 4383 | 4593 | 4383 | ID=Msa1356180-mRNA-1:cds;Parent=Msa1356180-mRNA-1 |
| tig0015533 | CDS | 3920 | 4030 | 3920 | ID=Msa1356180-mRNA-1:cds;Parent=Msa1356180-mRNA-1 |
| tig0015533 | CDS | 3313 | 3774 | 3313 | ID=Msa1356180-mRNA-1:cds;Parent=Msa1356180-mRNA-1 |
| tig0015533 | three_prime_UTR | 2811 | 3312 | 2811 | ID=Msa1356180-mRNA-1:three_prime_utr;Parent=Msa1356180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
