AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1050000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1050000 MtrunA17_Chr7g0218811 89.381 452 36 2 1 452 11 450 0.0 832
Msa1050000 MtrunA17_Chr7g0218821 81.153 451 84 1 1 451 1 450 0.0 764
Msa1050000 MtrunA17_Chr7g0218831 67.038 449 135 2 3 451 4 439 0.0 631
Msa1050000 MtrunA17_Chr7g0218841 66.444 450 137 3 3 451 4 440 0.0 620
Msa1050000 MtrunA17_Chr7g0218791 56.195 452 189 4 1 451 1 444 0.0 534
Msa1050000 MtrunA17_Chr3g0118661 33.713 439 252 11 4 414 12 439 9.24e-75 242
Msa1050000 MtrunA17_Chr3g0078841 32.075 477 281 13 4 448 9 474 2.89e-72 236
Msa1050000 MtrunA17_Chr3g0118671 31.933 476 281 12 5 448 6 470 1.93e-71 233
Msa1050000 MtrunA17_Chr5g0426431 32.985 479 276 15 3 449 10 475 2.95e-71 233
Msa1050000 MtrunA17_Chr3g0118691 31.590 478 282 13 4 448 14 479 1.41e-70 231
Msa1050000 MtrunA17_Chr3g0092641 32.353 476 277 14 3 449 10 469 1.75e-70 231
Msa1050000 MtrunA17_Chr3g0118771 31.590 478 282 15 4 448 20 485 2.75e-69 228
Msa1050000 MtrunA17_Chr6g0454341 31.027 477 286 11 4 448 9 474 4.41e-69 227
Msa1050000 MtrunA17_Chr3g0118701 32.747 455 264 14 4 428 14 456 5.00e-69 227
Msa1050000 MtrunA17_Chr6g0454151 32.025 484 280 15 4 452 9 478 1.28e-68 226
Msa1050000 MtrunA17_Chr6g0454331 30.595 487 281 14 4 449 6 476 1.34e-68 226
Msa1050000 MtrunA17_Chr6g0454401 31.809 481 280 15 4 448 9 477 2.80e-68 225
Msa1050000 MtrunA17_Chr2g0278711 31.106 479 283 15 4 449 10 474 4.18e-68 224
Msa1050000 MtrunA17_Chr3g0118711 31.648 455 269 12 4 428 12 454 7.28e-68 224
Msa1050000 MtrunA17_Chr6g0454301 31.237 477 285 12 4 448 262 727 1.06e-67 229
Msa1050000 MtrunA17_Chr6g0454301 35.345 232 132 5 235 452 3 230 1.77e-39 151
Msa1050000 MtrunA17_Chr7g0217881 31.702 470 276 12 4 448 9 458 1.45e-67 223
Msa1050000 MtrunA17_Chr8g0336331 30.737 475 287 12 5 448 10 473 1.64e-67 223
Msa1050000 MtrunA17_Chr5g0448551 30.217 460 290 11 1 448 3 443 5.05e-67 221
Msa1050000 MtrunA17_Chr6g0454261 31.753 485 274 16 4 448 9 476 1.45e-66 221
Msa1050000 MtrunA17_Chr6g0454191 30.625 480 287 14 4 448 9 477 1.28e-65 218
Msa1050000 MtrunA17_Chr6g0454321 30.349 458 276 13 5 430 10 456 2.96e-65 221
Msa1050000 MtrunA17_Chr6g0454291 30.146 481 287 13 4 448 6 473 3.94e-65 217
Msa1050000 MtrunA17_Chr6g0464871 30.277 469 278 10 3 448 21 463 4.49e-65 216
Msa1050000 MtrunA17_Chr6g0454131 30.753 478 287 12 4 448 9 475 2.32e-64 215
Msa1050000 MtrunA17_Chr6g0453961 29.897 485 292 13 4 452 18 490 2.98e-64 215
Msa1050000 MtrunA17_Chr6g0454181 30.165 484 283 15 4 448 9 476 3.38e-64 214
Msa1050000 MtrunA17_Chr6g0454141 29.583 480 291 12 4 448 9 476 3.76e-64 214
Msa1050000 MtrunA17_Chr6g0454201 31.875 480 280 14 4 448 10 477 5.22e-64 214
Msa1050000 MtrunA17_Chr6g0464861 30.361 471 272 12 4 448 10 450 9.92e-64 213
Msa1050000 MtrunA17_Chr7g0249981 29.211 469 279 12 5 449 25 464 1.02e-63 213
Msa1050000 MtrunA17_Chr6g0454211 30.000 480 289 14 4 448 296 763 1.30e-63 219
Msa1050000 MtrunA17_Chr6g0454211 36.250 160 62 5 221 368 105 236 7.76e-22 98.6
Msa1050000 MtrunA17_Chr5g0412111 30.165 484 280 12 1 450 1 460 1.46e-63 212
Msa1050000 MtrunA17_Chr6g0454121 30.544 478 288 12 4 448 9 475 3.76e-63 212
Msa1050000 MtrunA17_Chr6g0464921 31.423 471 271 14 4 449 10 453 7.55e-63 210
Msa1050000 MtrunA17_Chr6g0453951 28.778 483 299 14 4 452 56 527 7.93e-63 212
Msa1050000 MtrunA17_Chr6g0464841 30.277 469 278 11 3 448 9 451 3.66e-62 208
Msa1050000 MtrunA17_Chr7g0250001 29.550 467 280 13 5 449 6 445 9.48e-62 207
Msa1050000 MtrunA17_Chr3g0118751 31.224 474 260 16 4 448 5 441 1.03e-61 207
Msa1050000 MtrunA17_Chr8g0359821 30.353 481 284 14 4 448 9 474 1.25e-61 207
Msa1050000 MtrunA17_Chr6g0454361 30.000 480 291 14 4 449 10 478 2.32e-61 207
Msa1050000 MtrunA17_Chr6g0464881 28.541 473 289 11 3 452 9 455 3.40e-61 206
Msa1050000 MtrunA17_Chr4g0050341 30.538 465 267 14 4 429 18 465 4.13e-61 206
Msa1050000 MtrunA17_Chr5g0414331 30.573 471 271 16 5 450 13 452 5.82e-61 205
Msa1050000 MtrunA17_Chr4g0053501 29.175 473 286 14 5 449 11 462 1.96e-60 205
Msa1050000 MtrunA17_Chr5g0414321 29.274 468 285 12 5 452 11 452 7.21e-60 202
Msa1050000 MtrunA17_Chr5g0423981 29.474 475 271 13 4 452 9 445 3.30e-59 200
Msa1050000 MtrunA17_Chr5g0412131 30.271 479 283 13 3 450 10 468 8.08e-59 200
Msa1050000 MtrunA17_Chr3g0112761 32.043 465 269 14 5 448 8 446 2.14e-58 198
Msa1050000 MtrunA17_Chr4g0053321 28.541 473 287 12 6 449 27 477 3.21e-58 199
Msa1050000 MtrunA17_Chr1g0207981 27.097 465 312 8 5 449 13 470 1.43e-57 197
Msa1050000 MtrunA17_Chr6g0452771 29.876 482 287 13 4 448 9 476 3.41e-57 196
Msa1050000 MtrunA17_Chr6g0454351 27.329 483 289 13 4 452 11 465 3.58e-55 190
Msa1050000 MtrunA17_Chr7g0249931 29.053 475 274 15 5 449 40 481 5.12e-55 190
Msa1050000 MtrunA17_Chr3g0121991 28.660 485 286 16 5 449 79 543 5.83e-54 189
Msa1050000 MtrunA17_Chr8g0377921 29.039 489 277 19 3 449 1 461 6.88e-54 187
Msa1050000 MtrunA17_Chr3g0098111 29.079 478 285 16 5 448 9 466 5.33e-53 184
Msa1050000 MtrunA17_Chr3g0112771 29.915 468 271 14 7 449 14 449 1.45e-52 183
Msa1050000 MtrunA17_Chr5g0412101 28.690 481 287 13 4 450 11 469 4.21e-52 182
Msa1050000 MtrunA17_Chr8g0365811 29.536 474 286 17 7 448 497 954 7.65e-52 187
Msa1050000 MtrunA17_Chr8g0365811 31.235 429 262 14 5 408 9 429 5.11e-49 179
Msa1050000 MtrunA17_Chr6g0454251 29.323 399 240 12 4 369 6 395 7.84e-52 179
Msa1050000 MtrunA17_Chr1g0161351 30.704 469 289 16 5 448 37 494 2.02e-51 181
Msa1050000 MtrunA17_Chr3g0122001 28.367 490 281 18 5 449 486 950 3.67e-51 186
Msa1050000 MtrunA17_Chr3g0122001 26.639 488 293 17 5 449 6 471 1.97e-44 166
Msa1050000 MtrunA17_Chr8g0380531 27.234 470 293 13 5 449 10 455 4.93e-51 179
Msa1050000 MtrunA17_Chr1g0207861 30.126 478 280 18 5 448 8 465 8.13e-51 179
Msa1050000 MtrunA17_Chr6g0454221 39.301 229 120 4 235 448 3 227 6.31e-50 172
Msa1050000 MtrunA17_Chr4g0032331 29.724 471 285 18 3 452 5 450 1.32e-49 175
Msa1050000 MtrunA17_Chr1g0207971 29.362 470 279 17 5 448 8 450 2.11e-49 174
Msa1050000 MtrunA17_Chr1g0207931 28.726 463 251 13 5 448 92 494 3.30e-49 175
Msa1050000 MtrunA17_Chr1g0207831 29.436 479 275 16 6 448 9 460 1.40e-48 172
Msa1050000 MtrunA17_Chr5g0401721 28.992 476 288 17 7 449 10 468 1.75e-48 172
Msa1050000 MtrunA17_Chr6g0454271 36.948 249 135 6 218 448 39 283 5.81e-48 166
Msa1050000 MtrunA17_Chr8g0347281 28.661 478 275 18 4 444 17 465 8.95e-48 171
Msa1050000 MtrunA17_Chr8g0377941 27.802 464 301 13 7 449 9 459 3.74e-47 169
Msa1050000 MtrunA17_Chr7g0243631 27.310 487 297 15 5 449 13 484 5.72e-47 169
Msa1050000 MtrunA17_Chr5g0431441 28.298 470 286 13 5 448 18 462 1.00e-46 167
Msa1050000 MtrunA17_Chr8g0335161 31.783 387 208 14 101 447 92 462 2.01e-46 167
Msa1050000 MtrunA17_Chr7g0232401 31.412 347 207 10 129 449 124 465 3.67e-46 166
Msa1050000 MtrunA17_Chr7g0243681 27.975 479 299 13 5 449 11 477 5.40e-46 166
Msa1050000 MtrunA17_Chr1g0207951 28.721 477 274 17 5 448 124 567 1.08e-45 170
Msa1050000 MtrunA17_Chr1g0207951 27.731 476 286 15 5 448 656 1105 2.62e-41 157
Msa1050000 MtrunA17_Chr5g0426401 34.471 293 162 10 182 449 21 308 2.76e-45 160
Msa1050000 MtrunA17_Chr5g0431421 28.092 477 271 16 5 449 10 446 6.18e-45 162
Msa1050000 MtrunA17_Chr7g0275511 27.198 489 280 15 4 447 14 471 1.06e-44 162
Msa1050000 MtrunA17_Chr6g0486251 26.964 471 294 15 8 447 9 460 1.43e-44 162
Msa1050000 MtrunA17_Chr6g0486201 26.964 471 294 15 8 447 9 460 1.43e-44 162
Msa1050000 MtrunA17_Chr6g0459311 26.875 480 283 17 8 447 16 467 1.93e-44 161
Msa1050000 MtrunA17_Chr5g0393591 27.214 463 277 14 3 449 15 433 4.58e-44 160
Msa1050000 MtrunA17_Chr8g0347271 26.964 471 292 14 4 444 18 466 4.87e-44 160
Msa1050000 MtrunA17_Chr5g0431401 26.947 475 279 17 5 449 10 446 5.47e-44 160
Msa1050000 MtrunA17_Chr7g0275681 27.869 488 298 16 3 452 10 481 9.62e-44 160
Msa1050000 MtrunA17_Chr5g0431361 27.637 474 286 16 2 449 9 451 1.96e-43 158
Msa1050000 MtrunA17_Chr7g0243771 27.443 481 300 13 5 449 6 473 7.33e-43 157
Msa1050000 MtrunA17_Chr7g0249961 36.170 235 130 6 230 449 28 257 1.02e-42 152
Msa1050000 MtrunA17_Chr3g0118721 35.776 232 128 6 234 448 59 286 1.14e-42 152
Msa1050000 MtrunA17_Chr8g0335141 26.987 478 294 17 4 447 8 464 1.31e-42 156
Msa1050000 MtrunA17_Chr4g0060511 27.515 487 299 15 5 449 11 485 4.12e-42 155
Msa1050000 MtrunA17_Chr5g0431371 26.261 476 285 16 3 449 8 446 8.28e-42 154
Msa1050000 MtrunA17_Chr6g0449931 27.824 478 290 15 5 447 6 463 8.68e-42 154
Msa1050000 MtrunA17_Chr8g0336691 28.841 371 230 8 101 443 1006 1370 1.86e-41 157
Msa1050000 MtrunA17_Chr8g0336691 25.413 484 293 12 5 447 13 469 1.11e-39 152
Msa1050000 MtrunA17_Chr8g0336691 29.076 368 214 10 101 447 567 908 2.19e-35 140
Msa1050000 MtrunA17_Chr5g0429711 28.330 473 287 19 5 449 11 459 2.81e-41 152
Msa1050000 MtrunA17_Chr7g0265041 25.813 492 316 14 1 452 7 489 3.13e-41 153
Msa1050000 MtrunA17_Chr8g0373301 28.375 363 216 11 117 447 112 462 5.58e-41 152
Msa1050000 MtrunA17_Chr6g0462571 30.650 323 191 10 129 427 124 437 5.98e-41 152
Msa1050000 MtrunA17_Chr7g0232411 28.533 375 234 11 101 447 93 461 7.04e-41 152
Msa1050000 MtrunA17_Chr8g0336651 28.836 378 232 8 101 447 868 1239 7.21e-41 156
Msa1050000 MtrunA17_Chr8g0336651 36.287 237 118 8 240 451 237 465 2.14e-36 142
Msa1050000 MtrunA17_Chr8g0336651 32.197 264 136 6 202 447 532 770 4.72e-36 142
Msa1050000 MtrunA17_Chr7g0243801 26.793 474 304 12 9 449 11 474 8.09e-41 152
Msa1050000 MtrunA17_Chr7g0243931 25.311 482 313 12 5 449 17 488 1.28e-40 152
Msa1050000 MtrunA17_Chr8g0339451 29.781 366 214 12 117 447 102 459 1.68e-40 150
Msa1050000 MtrunA17_Chr1g0153451 28.000 375 234 9 101 447 93 459 1.87e-40 150
Msa1050000 MtrunA17_Chr6g0462531 27.368 475 280 16 6 441 5 453 3.26e-40 150
Msa1050000 MtrunA17_Chr3g0079731 27.255 499 281 20 6 449 7 478 4.45e-40 150
Msa1050000 MtrunA17_Chr5g0440421 25.101 494 311 16 4 449 9 491 5.15e-40 150
Msa1050000 MtrunA17_Chr4g0044511 26.415 477 292 15 5 443 40 495 5.23e-40 150
Msa1050000 MtrunA17_Chr7g0243871 27.292 480 292 15 7 449 11 470 6.15e-40 149
Msa1050000 MtrunA17_Chr5g0442561 24.949 489 298 19 9 452 9 473 6.61e-40 149
Msa1050000 MtrunA17_Chr6g0462551 29.360 344 205 12 131 447 128 460 1.01e-39 149
Msa1050000 MtrunA17_Chr8g0334851 28.040 403 237 14 80 444 75 462 1.25e-39 148
Msa1050000 MtrunA17_Chr6g0462541 29.539 369 216 11 108 447 106 459 1.47e-39 148
Msa1050000 MtrunA17_Chr8g0339461 32.759 290 155 9 188 447 188 467 2.10e-39 148
Msa1050000 MtrunA17_Chr6g0454171 32.110 327 158 14 147 448 19 306 3.18e-39 144
Msa1050000 MtrunA17_Chr7g0243761 27.426 474 283 16 5 449 11 452 3.36e-39 147
Msa1050000 MtrunA17_Chr7g0232391 30.133 375 228 12 101 447 93 461 3.45e-39 147
Msa1050000 MtrunA17_Chr8g0339441 37.981 208 107 5 262 447 218 425 9.65e-39 145
Msa1050000 MtrunA17_Chr7g0232311 30.861 337 194 12 141 448 134 460 1.05e-38 145
Msa1050000 MtrunA17_Chr1g0153461 37.143 210 113 5 259 449 1 210 1.05e-38 139
Msa1050000 MtrunA17_Chr7g0232331 30.532 357 212 14 101 428 93 442 1.43e-38 145
Msa1050000 MtrunA17_Chr7g0243861 24.540 489 308 13 5 449 14 485 1.84e-38 145
Msa1050000 MtrunA17_Chr5g0442601 24.486 486 312 18 7 452 406 876 1.96e-38 148
Msa1050000 MtrunA17_Chr5g0442601 33.918 171 93 5 239 389 166 336 3.74e-24 105
Msa1050000 MtrunA17_Chr7g0243951 25.780 481 311 14 5 449 11 481 2.27e-38 145
Msa1050000 MtrunA17_Chr7g0243781 26.763 482 291 15 9 449 13 473 2.78e-38 145
Msa1050000 MtrunA17_Chr7g0265141 27.309 498 286 19 5 449 9 483 6.33e-38 144
Msa1050000 MtrunA17_Chr5g0442581 24.641 487 306 16 9 452 9 477 1.08e-37 144
Msa1050000 MtrunA17_Chr5g0442541 24.638 483 300 15 9 452 9 466 1.95e-37 142
Msa1050000 MtrunA17_Chr8g0361371 26.392 485 286 20 8 448 10 467 2.22e-37 142
Msa1050000 MtrunA17_Chr7g0235051 25.367 477 278 13 5 444 11 446 2.26e-37 142
Msa1050000 MtrunA17_Chr8g0336731 27.822 381 230 12 101 448 119 487 2.27e-37 142
Msa1050000 MtrunA17_Chr8g0334861 29.155 367 219 11 115 449 104 461 2.32e-37 142
Msa1050000 MtrunA17_Chr5g0442521 23.431 478 318 10 9 450 9 474 3.13e-37 142
Msa1050000 MtrunA17_Chr4g0044521 26.623 462 279 17 15 441 19 455 5.90e-37 141
Msa1050000 MtrunA17_Chr2g0307961 26.458 480 286 14 4 445 12 462 5.94e-37 141
Msa1050000 MtrunA17_Chr4g0066221 27.347 490 287 20 5 449 13 478 6.24e-37 141
Msa1050000 MtrunA17_Chr6g0462521 29.738 343 204 11 120 441 113 439 7.12e-37 140
Msa1050000 MtrunA17_Chr4g0066261 25.971 489 296 16 5 449 13 479 9.61e-37 140
Msa1050000 MtrunA17_Chr3g0106231 27.101 476 270 16 5 448 18 448 1.39e-36 140
Msa1050000 MtrunA17_Chr7g0232341 36.967 211 112 6 237 428 234 442 2.30e-36 139
Msa1050000 MtrunA17_Chr8g0339601 32.836 268 148 8 210 447 61 326 3.40e-36 136
Msa1050000 MtrunA17_Chr8g0336741 26.652 454 290 12 2 429 10 446 3.75e-36 139
Msa1050000 MtrunA17_Chr8g0355011 27.052 329 190 8 117 431 46 338 3.88e-36 137
Msa1050000 MtrunA17_Chr2g0329111 25.996 477 285 14 7 439 8 460 4.99e-36 139
Msa1050000 MtrunA17_Chr7g0265101 24.638 483 317 16 5 448 9 483 9.94e-36 138
Msa1050000 MtrunA17_Chr4g0011051 24.059 478 316 14 5 443 9 478 1.02e-35 138
Msa1050000 MtrunA17_Chr5g0419761 26.531 490 298 17 5 448 9 482 2.95e-35 136
Msa1050000 MtrunA17_Chr8g0334831 24.746 493 293 18 8 448 9 475 3.07e-35 136
Msa1050000 MtrunA17_Chr5g0403641 34.286 245 121 10 219 428 237 476 3.41e-35 137
Msa1050000 MtrunA17_Chr4g0066131 24.435 487 293 16 9 450 17 473 4.27e-35 136
Msa1050000 MtrunA17_Chr8g0339631 27.348 362 225 11 117 447 110 464 5.19e-35 135
Msa1050000 MtrunA17_Chr5g0410941 25.720 486 297 18 5 449 25 487 5.51e-35 136
Msa1050000 MtrunA17_Chr7g0265151 25.866 491 298 16 5 448 9 480 5.94e-35 135
Msa1050000 MtrunA17_Chr5g0442491 23.614 487 309 14 9 452 9 475 7.36e-35 135
Msa1050000 MtrunA17_Chr8g0366391 26.186 485 298 16 5 448 9 474 9.92e-35 135
Msa1050000 MtrunA17_Chr5g0448521 25.067 371 243 10 115 452 100 468 1.54e-34 134
Msa1050000 MtrunA17_Chr4g0066281 26.240 484 285 17 6 449 13 464 1.57e-34 134
Msa1050000 MtrunA17_Chr5g0429681 26.271 472 301 17 6 449 45 497 2.68e-34 134
Msa1050000 MtrunA17_Chr7g0265051 25.506 494 297 19 5 448 9 481 3.46e-34 134
Msa1050000 MtrunA17_Chr4g0066151 25.309 486 288 17 9 449 22 477 3.98e-34 133
Msa1050000 MtrunA17_Chr4g0066201 26.543 486 277 19 9 449 22 472 5.46e-34 133
Msa1050000 MtrunA17_Chr4g0066171 27.291 491 266 20 9 449 25 474 6.59e-34 132
Msa1050000 MtrunA17_Chr5g0432731 32.117 274 156 8 203 452 30 297 1.40e-33 128
Msa1050000 MtrunA17_Chr4g0029131 27.430 463 277 15 5 437 12 445 2.49e-33 133
Msa1050000 MtrunA17_Chr4g0072761 25.702 463 297 16 5 448 15 449 2.79e-33 130
Msa1050000 MtrunA17_Chr2g0294931 25.052 483 302 15 9 449 15 479 2.82e-33 131
Msa1050000 MtrunA17_Chr4g0044481 28.297 417 221 19 5 390 27 396 2.89e-33 130
Msa1050000 MtrunA17_Chr5g0428081 24.845 483 307 15 5 449 13 477 3.19e-33 130
Msa1050000 MtrunA17_Chr4g0014061 31.696 224 129 5 246 450 253 471 3.45e-33 130
Msa1050000 MtrunA17_Chr5g0419771 25.494 506 283 20 5 448 36 509 4.37e-33 130
Msa1050000 MtrunA17_Chr5g0442511 30.085 236 139 7 239 450 259 492 7.01e-33 130
Msa1050000 MtrunA17_Chr7g0218311 24.583 480 311 12 5 449 18 481 2.62e-32 128
Msa1050000 MtrunA17_Chr4g0072771 24.401 459 311 14 5 448 25 462 2.87e-32 128
Msa1050000 MtrunA17_Chr6g0454371 34.857 175 104 3 284 452 1 171 8.45e-32 119
Msa1050000 MtrunA17_Chr3g0106251 33.673 196 117 3 260 448 101 290 8.77e-32 123
Msa1050000 MtrunA17_Chr8g0336261 39.716 141 78 2 284 421 1 137 1.06e-31 118
Msa1050000 MtrunA17_Chr7g0243711 35.749 207 114 5 262 449 108 314 1.65e-31 123
Msa1050000 MtrunA17_Chr2g0302991 24.691 486 287 14 9 449 9 460 2.53e-31 125
Msa1050000 MtrunA17_Chr3g0079711 33.514 185 101 6 287 449 2 186 4.76e-31 118
Msa1050000 MtrunA17_Chr1g0173121 30.088 226 138 4 239 448 238 459 4.92e-31 124
Msa1050000 MtrunA17_Chr1g0159551 22.961 466 304 12 10 448 19 456 5.08e-31 124
Msa1050000 MtrunA17_Chr4g0044501 26.526 475 291 16 5 441 10 464 7.62e-31 124
Msa1050000 MtrunA17_Chr8g0374971 26.078 487 292 20 8 449 15 478 9.91e-31 124
Msa1050000 MtrunA17_Chr8g0382021 22.947 475 302 13 10 448 39 485 1.20e-30 123
Msa1050000 MtrunA17_Chr7g0265111 24.291 494 304 18 5 448 39 512 1.52e-30 124
Msa1050000 MtrunA17_Chr6g0463861 26.186 485 290 18 5 448 13 470 3.13e-30 122
Msa1050000 MtrunA17_Chr7g0243911 36.413 184 101 4 262 429 22 205 3.85e-30 116
Msa1050000 MtrunA17_Chr8g0374931 24.359 468 297 16 5 445 13 450 4.84e-30 122
Msa1050000 MtrunA17_Chr2g0302961 24.109 477 304 15 9 449 9 463 5.10e-30 121
Msa1050000 MtrunA17_Chr5g0409591 31.818 242 128 7 219 423 214 455 6.15e-30 121
Msa1050000 MtrunA17_Chr8g0374901 25.620 484 296 17 8 449 15 476 1.11e-29 120
Msa1050000 MtrunA17_Chr6g0463891 25.873 487 297 17 7 448 14 481 1.21e-29 120
Msa1050000 MtrunA17_Chr5g0401851 23.760 484 301 18 7 443 12 474 2.13e-29 120
Msa1050000 MtrunA17_Chr8g0370941 31.148 244 128 7 240 446 243 483 2.84e-29 120
Msa1050000 MtrunA17_Chr5g0416741 23.340 497 297 15 7 449 15 481 3.67e-29 119
Msa1050000 MtrunA17_Chr7g0243851 33.333 207 119 4 262 449 234 440 3.93e-29 119
Msa1050000 MtrunA17_Chr2g0294921 24.319 477 317 14 5 448 162 627 4.19e-29 120
Msa1050000 MtrunA17_Chr1g0179901 30.672 238 136 8 240 448 253 490 7.38e-29 118
Msa1050000 MtrunA17_Chr8g0374941 26.609 466 273 21 8 429 14 454 2.66e-28 119
Msa1050000 MtrunA17_Chr8g0374941 24.082 490 298 14 8 449 952 1415 8.89e-27 114
Msa1050000 MtrunA17_Chr8g0374941 24.324 481 265 15 8 429 479 919 2.27e-24 107
Msa1050000 MtrunA17_Chr6g0463851 24.138 493 301 15 5 449 13 480 4.19e-28 116
Msa1050000 MtrunA17_Chr8g0350881 23.218 491 305 15 6 449 13 478 7.25e-28 115
Msa1050000 MtrunA17_Chr8g0369341 25.420 476 306 19 5 448 7 465 1.85e-27 114
Msa1050000 MtrunA17_Chr7g0243611 40.000 135 75 2 262 390 136 270 2.35e-27 110
Msa1050000 MtrunA17_Chr1g0196851 24.784 464 291 16 5 437 49 485 2.66e-27 114
Msa1050000 MtrunA17_Chr2g0294941 33.019 212 119 6 228 418 133 342 3.76e-27 112
Msa1050000 MtrunA17_Chr7g0241781 26.598 391 228 14 5 379 9 356 4.28e-27 112
Msa1050000 MtrunA17_Chr7g0243811 25.245 408 235 14 17 389 1 373 1.44e-26 110
Msa1050000 MtrunA17_Chr2g0319761 27.083 480 265 18 5 441 8 445 1.63e-26 111
Msa1050000 MtrunA17_Chr5g0420801 23.769 467 317 15 5 449 7 456 2.44e-26 110
Msa1050000 MtrunA17_Chr8g0361411 23.454 469 308 13 5 448 8 450 4.92e-26 110
Msa1050000 MtrunA17_Chr7g0250021 27.941 340 194 12 5 323 12 321 6.25e-26 107
Msa1050000 MtrunA17_Chr2g0283041 25.455 440 276 17 3 417 5 417 1.35e-25 108
Msa1050000 MtrunA17_Chr8g0367221 25.761 427 256 17 5 398 12 410 1.64e-25 110
Msa1050000 MtrunA17_Chr8g0367221 24.706 425 264 13 5 398 798 1197 2.21e-24 107
Msa1050000 MtrunA17_Chr8g0367221 24.615 455 290 15 5 429 1288 1719 1.67e-23 104
Msa1050000 MtrunA17_Chr7g0241801 25.163 461 285 18 5 450 9 424 2.06e-25 107
Msa1050000 MtrunA17_Chr4g0029151 27.039 466 275 17 5 437 20 453 2.27e-25 108
Msa1050000 MtrunA17_Chr1g0165701 28.846 260 149 8 220 449 228 481 6.97e-25 107
Msa1050000 MtrunA17_Chr8g0336251 25.217 460 281 15 5 428 7 439 8.08e-25 106
Msa1050000 MtrunA17_Chr8g0355221 25.000 416 259 13 73 449 83 484 1.01e-24 106
Msa1050000 MtrunA17_Chr4g0040691 24.274 482 271 17 5 437 8 444 1.72e-24 105
Msa1050000 MtrunA17_Chr8g0336321 25.217 460 281 15 5 428 7 439 1.99e-24 105
Msa1050000 MtrunA17_Chr4g0040711 32.609 184 114 4 264 437 261 444 2.16e-24 105
Msa1050000 MtrunA17_Chr4g0042931 31.140 228 134 7 239 449 240 461 3.02e-24 104
Msa1050000 MtrunA17_Chr7g0232351 39.189 148 71 5 237 368 234 378 9.65e-24 102
Msa1050000 MtrunA17_Chr4g0042891 30.396 227 131 5 239 448 246 462 4.24e-23 101
Msa1050000 MtrunA17_Chr1g0207881 36.508 126 75 2 328 448 256 381 6.81e-23 100
Msa1050000 MtrunA17_Chr6g0454231 27.982 218 107 6 235 441 29 207 1.59e-22 99.8
Msa1050000 MtrunA17_Chr6g0454231 27.108 166 110 3 4 165 249 407 3.89e-15 77.4
Msa1050000 MtrunA17_Chr8g0337381 36.585 123 76 2 330 450 3 125 2.13e-22 92.4
Msa1050000 MtrunA17_Chr4g0029161 25.926 459 261 16 5 437 12 417 5.96e-22 97.8
Msa1050000 MtrunA17_Chr6g0482061 22.777 461 312 14 3 430 9 458 1.27e-21 97.4
Msa1050000 MtrunA17_Chr5g0431431 26.014 419 214 18 5 411 10 344 3.28e-21 94.7
Msa1050000 MtrunA17_Chr5g0416821 22.614 482 308 16 7 449 16 471 7.63e-21 94.7
Msa1050000 MtrunA17_Chr2g0278721 23.894 452 301 13 5 429 517 952 8.18e-21 95.9
Msa1050000 MtrunA17_Chr2g0278721 23.568 454 291 17 5 429 15 441 1.96e-16 82.0
Msa1050000 MtrunA17_Chr8g0357361 35.211 142 87 3 262 399 118 258 2.76e-20 90.5
Msa1050000 MtrunA17_Chr2g0319751 24.726 457 291 14 5 435 485 914 3.26e-20 94.0
Msa1050000 MtrunA17_Chr2g0319751 28.877 187 99 7 262 437 257 420 1.46e-13 73.2
Msa1050000 MtrunA17_Chr2g0319791 34.574 188 111 6 262 437 257 444 7.59e-20 91.7
Msa1050000 MtrunA17_Chr5g0427571 29.487 234 135 7 219 428 46 273 1.07e-19 89.4
Msa1050000 MtrunA17_Chr2g0319731 25.652 460 287 17 5 437 25 456 5.25e-19 89.4
Msa1050000 MtrunA17_Chr4g0069611 22.844 429 298 11 5 418 15 425 1.38e-18 87.8
Msa1050000 MtrunA17_Chr3g0092031 32.500 160 100 5 264 418 6 162 6.57e-18 82.0
Msa1050000 MtrunA17_Chr7g0231631 26.054 261 149 8 219 449 11 257 9.49e-18 83.2
Msa1050000 MtrunA17_Chr2g0319801 25.054 463 286 14 5 437 8 439 1.00e-17 85.1
Msa1050000 MtrunA17_Chr5g0426411 31.579 171 105 5 4 170 11 173 1.23e-17 80.5
Msa1050000 MtrunA17_Chr4g0066141 33.577 137 77 3 327 449 213 349 1.36e-17 84.0
Msa1050000 MtrunA17_Chr6g0466831 22.912 467 301 15 5 446 18 450 3.00e-17 84.0
Msa1050000 MtrunA17_Chr6g0454281 30.000 170 105 3 4 166 9 171 4.00e-17 80.1
Msa1050000 MtrunA17_Chr7g0243731 45.205 73 39 1 327 398 6 78 1.12e-16 74.7
Msa1050000 MtrunA17_Chr6g0466841 22.523 444 281 15 5 418 18 428 2.18e-16 81.3
Msa1050000 MtrunA17_Chr2g0278741 23.673 452 293 16 5 429 97 523 2.62e-16 81.3
Msa1050000 MtrunA17_Chr2g0321331 32.778 180 93 7 269 437 91 253 3.89e-16 78.6
Msa1050000 MtrunA17_Chr6g0464091 36.232 138 81 4 264 397 279 413 1.58e-15 78.6
Msa1050000 MtrunA17_Chr6g0453981 43.011 93 45 2 225 309 113 205 3.44e-15 74.7
Msa1050000 MtrunA17_Chr2g0302851 23.182 440 283 15 5 418 16 426 4.80e-15 77.0
Msa1050000 MtrunA17_Chr4g0039881 22.664 428 280 13 15 418 2 402 5.28e-15 77.0
Msa1050000 MtrunA17_Chr8g0336271 26.220 164 111 3 5 165 10 166 4.85e-13 69.3
Msa1050000 MtrunA17_Chr8g0334841 41.935 93 50 2 235 327 64 152 1.38e-12 65.9
Msa1050000 MtrunA17_Chr6g0454391 40.580 69 37 1 343 411 11 75 4.59e-12 63.2
Msa1050000 MtrunA17_Chr6g0453941 51.724 58 28 0 252 309 201 258 1.21e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1050000 AT3G02100.1 40.605 463 249 9 1 450 9 458 7.73e-123 365
Msa1050000 AT1G22340.1 31.524 479 284 16 4 449 12 479 3.14e-74 241
Msa1050000 AT1G22400.1 31.447 477 283 13 4 450 12 474 1.77e-72 236
Msa1050000 AT1G22380.1 31.733 479 282 15 4 449 12 478 1.18e-71 234
Msa1050000 AT1G78270.1 31.789 475 283 14 4 450 12 473 2.81e-71 233
Msa1050000 AT1G22370.2 33.173 416 248 8 4 396 12 420 4.42e-71 233
Msa1050000 AT1G22360.1 32.150 479 278 16 5 449 10 475 1.71e-70 231
Msa1050000 AT1G22360.2 32.409 469 274 14 5 439 10 469 1.64e-66 220
Msa1050000 AT3G55700.1 30.947 475 264 16 5 449 8 448 1.42e-62 210
Msa1050000 AT3G22250.1 28.172 465 271 12 4 433 7 443 6.50e-62 208
Msa1050000 AT1G05675.1 29.550 467 285 11 5 449 6 450 1.48e-61 207
Msa1050000 AT3G46670.1 29.274 468 276 13 7 450 11 447 1.78e-61 207
Msa1050000 AT3G21560.1 30.146 481 280 15 4 449 11 470 4.31e-61 207
Msa1050000 AT5G59590.1 29.787 470 273 14 5 449 10 447 2.12e-60 204
Msa1050000 AT3G46660.1 29.526 464 282 13 7 450 16 454 5.05e-59 200
Msa1050000 AT1G05680.1 28.936 470 284 11 5 449 6 450 6.57e-59 200
Msa1050000 AT4G15550.1 28.395 486 288 17 4 452 12 474 8.86e-59 200
Msa1050000 AT5G59580.1 29.424 469 275 14 5 449 9 445 3.21e-58 198
Msa1050000 AT2G31750.1 29.614 466 280 11 7 448 10 451 1.15e-57 197
Msa1050000 AT3G11340.1 29.449 472 276 12 4 452 8 445 1.61e-57 196
Msa1050000 AT2G31750.2 29.614 466 280 11 7 448 10 451 3.99e-57 196
Msa1050000 AT3G55710.1 30.769 468 282 15 3 449 6 452 3.19e-56 193
Msa1050000 AT5G05880.1 28.330 473 275 14 7 450 10 447 1.71e-55 191
Msa1050000 AT2G36970.1 28.330 473 299 13 4 449 9 468 1.87e-55 192
Msa1050000 AT5G38010.1 28.571 476 275 12 5 449 10 451 2.44e-55 191
Msa1050000 AT2G23260.1 28.632 475 276 16 5 449 10 451 7.11e-55 189
Msa1050000 AT3G46680.1 28.908 467 282 16 5 449 9 447 2.60e-54 187
Msa1050000 AT3G46650.1 28.850 461 278 14 5 452 10 433 2.92e-54 187
Msa1050000 AT3G46700.1 28.448 464 281 14 5 448 9 441 3.44e-54 187
Msa1050000 AT5G05900.1 27.922 462 290 11 7 450 10 446 1.00e-53 186
Msa1050000 AT5G38040.1 29.167 456 272 13 15 448 20 446 1.16e-53 186
Msa1050000 AT3G46690.1 28.817 465 288 14 5 449 9 450 1.93e-53 186
Msa1050000 AT4G15500.1 28.364 483 281 15 3 449 7 460 6.51e-53 184
Msa1050000 AT4G14090.1 27.719 469 289 14 4 449 12 453 1.71e-52 183
Msa1050000 AT4G15490.1 28.875 471 295 19 5 449 8 464 2.72e-52 183
Msa1050000 AT2G43840.2 28.238 471 279 14 5 449 7 444 2.92e-52 182
Msa1050000 AT2G43840.1 28.450 471 278 14 5 449 7 444 2.98e-52 182
Msa1050000 AT2G23250.1 27.571 457 278 12 15 449 8 433 3.01e-52 182
Msa1050000 AT5G05860.1 28.078 463 289 12 5 449 9 445 5.80e-52 181
Msa1050000 AT3G46720.1 30.652 460 261 14 5 443 9 431 6.10e-52 181
Msa1050000 AT1G05560.1 25.630 476 298 12 1 448 1 448 1.59e-51 181
Msa1050000 AT1G05560.2 25.630 476 298 12 1 448 51 498 2.39e-51 181
Msa1050000 AT1G05530.1 26.708 483 287 14 1 448 1 451 3.97e-51 179
Msa1050000 AT2G30140.2 27.991 468 282 13 5 449 13 448 2.04e-50 177
Msa1050000 AT4G15480.1 27.061 473 302 13 5 449 19 476 2.71e-50 178
Msa1050000 AT5G05870.1 26.767 467 298 11 5 449 8 452 4.20e-50 177
Msa1050000 AT2G30140.1 27.872 470 281 14 5 449 13 449 4.83e-50 176
Msa1050000 AT5G05890.1 28.875 471 283 15 5 450 8 451 4.03e-49 174
Msa1050000 AT2G26480.1 27.331 472 282 16 7 452 10 446 8.14e-49 173
Msa1050000 AT2G43820.1 27.601 471 282 14 5 449 7 444 8.95e-49 173
Msa1050000 AT2G28080.1 27.312 465 297 16 9 449 22 469 1.22e-48 173
Msa1050000 AT2G31790.1 27.564 468 293 11 5 448 8 453 5.86e-47 168
Msa1050000 AT1G01420.1 28.631 482 274 17 4 444 7 459 1.21e-46 168
Msa1050000 AT1G01420.2 28.631 482 274 17 4 444 10 462 1.69e-46 167
Msa1050000 AT1G22370.1 37.037 243 132 5 175 396 8 250 3.38e-46 162
Msa1050000 AT2G30150.2 27.623 467 293 16 1 448 9 449 4.31e-46 166
Msa1050000 AT2G15480.1 29.317 498 268 19 5 448 10 477 4.78e-45 164
Msa1050000 AT2G15490.1 28.838 482 283 17 5 443 7 471 9.66e-45 163
Msa1050000 AT3G16520.3 29.577 355 218 11 117 449 113 457 2.44e-44 161
Msa1050000 AT2G30150.1 27.669 459 287 16 9 448 1 433 1.19e-43 159
Msa1050000 AT2G15490.3 28.661 478 286 17 5 443 7 468 3.11e-43 159
Msa1050000 AT3G16520.2 30.183 328 207 10 117 427 113 435 5.94e-43 157
Msa1050000 AT1G24100.1 25.000 480 289 15 5 448 11 455 6.24e-43 157
Msa1050000 AT3G16520.1 30.488 328 206 10 117 427 113 435 8.32e-43 157
Msa1050000 AT2G15480.2 29.482 502 261 20 5 443 10 481 8.59e-43 158
Msa1050000 AT4G01070.1 27.637 474 290 16 4 444 7 460 1.36e-41 154
Msa1050000 AT2G36800.1 27.105 487 297 16 5 448 12 483 2.29e-41 154
Msa1050000 AT2G36760.1 26.477 491 284 16 5 443 14 479 2.54e-41 154
Msa1050000 AT2G29740.1 27.021 470 313 13 5 449 8 472 1.64e-40 151
Msa1050000 AT3G53160.1 27.218 496 270 19 5 441 8 471 2.97e-40 150
Msa1050000 AT2G36770.1 27.235 481 293 16 5 443 14 479 3.77e-40 150
Msa1050000 AT3G21790.1 24.897 486 311 12 5 449 4 476 5.03e-40 150
Msa1050000 AT3G21750.1 23.333 480 316 12 5 449 4 466 6.50e-40 149
Msa1050000 AT4G36770.1 30.556 468 249 23 5 429 4 438 1.11e-39 149
Msa1050000 AT2G36780.1 25.514 486 295 15 5 443 14 479 1.43e-39 149
Msa1050000 AT4G34131.1 26.506 498 281 15 5 448 10 476 3.53e-39 147
Msa1050000 AT3G21760.1 25.720 486 309 13 5 449 4 478 8.63e-39 147
Msa1050000 AT1G01390.1 27.484 473 292 14 4 444 7 460 2.81e-38 145
Msa1050000 AT1G01390.2 27.484 473 292 14 4 444 24 477 2.96e-38 145
Msa1050000 AT1G07250.1 25.793 473 311 13 6 448 7 469 4.80e-38 144
Msa1050000 AT3G21780.1 24.528 477 314 10 5 449 4 466 6.67e-38 144
Msa1050000 AT4G34138.1 26.337 486 293 17 1 440 1 467 8.30e-38 144
Msa1050000 AT2G36790.1 27.027 481 304 15 5 448 13 483 2.43e-37 143
Msa1050000 AT4G15260.1 25.575 348 229 7 130 449 7 352 3.75e-37 139
Msa1050000 AT3G21800.1 23.125 480 321 11 6 449 6 473 8.05e-37 141
Msa1050000 AT4G15280.1 23.333 480 321 14 5 449 4 471 1.42e-36 140
Msa1050000 AT2G36750.1 27.049 488 294 14 5 448 10 479 1.99e-36 140
Msa1050000 AT4G15280.2 23.333 480 321 14 5 449 36 503 2.23e-36 140
Msa1050000 AT4G34135.1 26.180 466 253 16 5 414 11 441 3.31e-36 139
Msa1050000 AT2G29750.1 25.738 474 313 13 5 449 8 471 4.09e-35 136
Msa1050000 AT5G17050.1 24.675 462 312 14 5 449 12 454 5.15e-35 135
Msa1050000 AT5G12890.1 26.176 489 284 18 15 452 20 482 2.39e-34 134
Msa1050000 AT3G50740.1 25.813 461 288 13 4 429 6 447 2.61e-34 134
Msa1050000 AT2G29730.1 24.842 475 306 17 5 448 5 459 4.63e-34 133
Msa1050000 AT3G53150.1 24.752 505 301 14 5 449 22 507 6.08e-34 134
Msa1050000 AT1G07240.1 23.868 486 318 16 1 448 1 472 8.70e-34 132
Msa1050000 AT1G07260.1 23.922 464 320 12 12 449 13 469 1.29e-33 132
Msa1050000 AT5G37950.2 26.330 376 211 9 20 368 1 337 6.33e-33 127
Msa1050000 AT5G37950.1 26.273 373 221 9 20 368 1 343 7.69e-33 127
Msa1050000 AT5G17040.1 24.948 477 296 18 1 452 1 440 1.17e-32 129
Msa1050000 AT2G18570.1 24.353 464 287 15 1 427 1 437 1.62e-32 129
Msa1050000 AT2G16890.2 25.826 484 283 18 5 444 9 460 6.24e-32 127
Msa1050000 AT5G26310.1 25.800 469 271 18 4 429 6 440 6.65e-32 127
Msa1050000 AT5G17030.1 25.106 470 299 19 5 449 12 453 8.27e-32 127
Msa1050000 AT1G30530.1 23.894 452 307 12 12 449 20 448 1.32e-31 126
Msa1050000 AT2G18560.1 33.171 205 114 6 239 427 150 347 4.70e-31 123
Msa1050000 AT5G17040.2 31.250 224 140 6 236 452 122 338 4.77e-31 122
Msa1050000 AT5G66690.1 31.818 242 128 7 219 429 205 440 6.19e-31 124
Msa1050000 AT2G22930.1 25.901 444 278 17 5 428 6 418 2.82e-30 122
Msa1050000 AT2G16890.3 25.670 448 261 16 5 412 9 424 1.03e-29 120
Msa1050000 AT1G73880.1 25.000 488 284 16 5 448 14 463 1.12e-29 121
Msa1050000 AT2G29710.1 23.142 471 319 15 6 449 6 460 1.50e-29 120
Msa1050000 AT1G10400.1 25.996 477 298 18 5 449 7 460 2.81e-29 119
Msa1050000 AT5G14860.1 24.286 490 278 17 5 443 8 455 6.79e-29 119
Msa1050000 AT1G64910.1 25.159 473 290 20 5 449 6 442 2.35e-28 117
Msa1050000 AT5G49690.1 25.361 485 280 19 5 449 10 452 2.92e-28 117
Msa1050000 AT4G27560.1 25.059 423 264 14 5 406 7 397 1.09e-27 115
Msa1050000 AT1G51210.1 24.832 447 282 15 4 429 19 432 1.27e-27 114
Msa1050000 AT5G53990.1 23.542 480 289 19 5 449 6 442 1.80e-27 114
Msa1050000 AT5G03490.1 31.651 218 131 4 240 448 251 459 1.82e-27 114
Msa1050000 AT5G65550.1 22.391 460 273 17 5 420 9 428 5.15e-27 113
Msa1050000 AT1G64920.1 24.051 474 298 17 5 449 6 446 4.22e-26 110
Msa1050000 AT4G27570.1 24.362 431 273 14 5 414 7 405 4.65e-26 110
Msa1050000 AT5G54010.1 23.769 467 303 15 5 449 6 441 8.23e-26 109
Msa1050000 AT4G09500.2 23.011 465 303 19 5 449 6 435 5.35e-23 101
Msa1050000 AT3G29630.1 24.459 462 283 15 15 449 16 438 7.16e-23 100
Msa1050000 AT1G50580.1 25.877 456 272 18 15 442 16 433 2.86e-22 99.4
Msa1050000 AT3G29630.2 24.766 428 260 13 15 428 16 395 6.64e-22 97.8
Msa1050000 AT1G06000.1 29.682 283 168 13 191 448 154 430 2.82e-21 96.3
Msa1050000 AT4G09500.1 31.765 170 106 5 270 429 225 394 2.93e-20 93.2
Msa1050000 AT2G22590.1 22.944 462 288 18 5 429 15 445 1.75e-18 88.2
Msa1050000 AT5G54060.1 23.126 467 300 15 15 448 23 463 1.13e-17 85.5
Msa1050000 AT4G01070.2 26.284 331 211 13 4 321 7 317 5.52e-15 76.6

Find 97 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTCCATCTTTGGCATATT+TGG 0.163778 7_2:+13754716 None:intergenic
GGGCCAATTGGTAGAAATTT+TGG 0.185322 7_2:+13754557 None:intergenic
GATACCCATTTGATTGAAAA+TGG 0.194794 7_2:+13757242 None:intergenic
TATTATTGTTACCTTCAATA+TGG 0.223301 7_2:-13756872 Msa1050000:CDS
GAATTAGACAAGGATGAAAA+TGG 0.225819 7_2:-13754086 Msa1050000:CDS
CTAAGGCTAATTCTTTAAAT+TGG 0.229806 7_2:+13754399 None:intergenic
ACTCCATCATCAATTAGTTT+AGG 0.236606 7_2:+13756757 None:intergenic
CTCCATCATCAATTAGTTTA+GGG 0.245474 7_2:+13756758 None:intergenic
AACAATAATATTTCTATTGT+TGG 0.251594 7_2:-13757087 Msa1050000:CDS
GACTGGCTCAGCAACTTCTT+TGG 0.255726 7_2:-13756797 Msa1050000:CDS
CTAATTCTTTAAATTGGTTT+TGG 0.262998 7_2:+13754405 None:intergenic
TGATCACTTCTATCATCTTC+AGG 0.269767 7_2:+13756994 None:intergenic
GAGCTGAATTTCTTGATCTT+TGG 0.276157 7_2:+13754742 None:intergenic
GGACAAAGCTTAGGAATTAA+AGG 0.285150 7_2:-13756832 Msa1050000:CDS
CTTCAATATGGGATGGGCTT+TGG 0.339287 7_2:-13756860 Msa1050000:CDS
CTGGTATACCTTTCTTGTGT+TGG 0.360564 7_2:-13754172 Msa1050000:CDS
CATAGAAGATGTTAATGATA+TGG 0.364764 7_2:-13756917 Msa1050000:CDS
TGTCACACTCCCAGATGGTT+TGG 0.377384 7_2:-13757019 Msa1050000:CDS
AGTATAGAAGGTGTATATTC+TGG 0.389103 7_2:-13754191 Msa1050000:CDS
CTGGATAACATAGTAGAAAA+TGG 0.390764 7_2:-13753969 Msa1050000:CDS
ATTATTGTTACCTTCAATAT+GGG 0.398070 7_2:-13756871 Msa1050000:CDS
ATATGTTTCCTTCGGTAGTT+TGG 0.403181 7_2:-13754438 Msa1050000:CDS
CTTCGGTAGTTTGGCAGTAA+TGG 0.405126 7_2:-13754429 Msa1050000:CDS
GAGATGCAAACTATGAAGTT+AGG 0.405801 7_2:-13754638 Msa1050000:CDS
AAGACATGACTTCATTAGAT+TGG 0.406433 7_2:-13754490 Msa1050000:CDS
AGTGATCTTGCTGCCATGTT+TGG 0.411201 7_2:+13757146 None:intergenic
TCACCAAAATTTCTACCAAT+TGG 0.411613 7_2:-13754560 Msa1050000:CDS
ATAATGCTTTAGTACTTGTT+TGG 0.414535 7_2:-13753901 Msa1050000:three_prime_UTR
TCTTCAGGTTCCAAACCATC+TGG 0.420787 7_2:+13757009 None:intergenic
GCATACCCTGACGATTTCCT+TGG 0.420864 7_2:-13754308 Msa1050000:CDS
ACCAATTGGCCCATTGATGA+TGG 0.421677 7_2:-13754546 Msa1050000:CDS
ATGGGATGGGCTTTGGAAGT+TGG 0.427573 7_2:-13756853 Msa1050000:CDS
TTAACATCTTCTATGAGCTT+AGG 0.431939 7_2:+13756925 None:intergenic
ACAGCAACAAAAGTTCATTC+TGG 0.432292 7_2:-13754517 Msa1050000:CDS
AATTAGACAAGGATGAAAAT+GGG 0.435454 7_2:-13754085 Msa1050000:CDS
TTGGAAGTTGGACAAAGCTT+AGG 0.440936 7_2:-13756841 Msa1050000:CDS
TCCATCATCAATGGGCCAAT+TGG 0.441886 7_2:+13754545 None:intergenic
CAATTTAAAGAATTAGCCTT+AGG 0.449998 7_2:-13754398 Msa1050000:CDS
ATTTGTGATGTGTGGAAGGT+TGG 0.452190 7_2:-13754113 Msa1050000:CDS
TTAGTTCCAAGGAAATCGTC+AGG 0.454014 7_2:+13754302 None:intergenic
TGAAAATGGGTTAGTACTAA+AGG 0.457967 7_2:-13754072 Msa1050000:CDS
GACGATTTCCTTGGAACTAA+AGG 0.458681 7_2:-13754299 Msa1050000:CDS
GGATTTATATGACCTGGGAC+TGG 0.463261 7_2:+13757195 None:intergenic
GATTTATATGACCTGGGACT+GGG 0.463275 7_2:+13757196 None:intergenic
GGTTGGAATTCTAGTATAGA+AGG 0.467850 7_2:-13754203 Msa1050000:CDS
ATAAATTGATCAGTTGCAAA+TGG 0.468563 7_2:+13754149 None:intergenic
CGATCTTGCCTTTAGTTCCA+AGG 0.473415 7_2:+13754291 None:intergenic
CTCTCCAAATATGCCAAAGA+TGG 0.475849 7_2:-13754720 Msa1050000:CDS
TCCAAAGAAAAGGCTTGTTA+AGG 0.478158 7_2:+13754366 None:intergenic
AAAGGAAGAGATAAAGAAGA+AGG 0.488960 7_2:-13754054 Msa1050000:CDS
GGACGAACAATCCAAAGAAA+AGG 0.490004 7_2:+13754356 None:intergenic
GTTATTCCATGCCCAGTCCC+AGG 0.495233 7_2:-13757207 Msa1050000:CDS
AGAAAGATCATTGAAACTAA+AGG 0.497391 7_2:-13754000 Msa1050000:CDS
TAAAGGCAAGATCGTTAGTT+GGG 0.498087 7_2:-13754282 Msa1050000:CDS
TGTGGCTGAATTCTGTGTTA+AGG 0.499811 7_2:+13757121 None:intergenic
TGTTACCTTCAATATGGGAT+GGG 0.503672 7_2:-13756866 Msa1050000:CDS
ATTAAATACGATCTTGTCAA+AGG 0.508870 7_2:+13754673 None:intergenic
TTGTTACCTTCAATATGGGA+TGG 0.510585 7_2:-13756867 Msa1050000:CDS
ATGAGGGGATTTATATGACC+TGG 0.515016 7_2:+13757189 None:intergenic
ATATGACCTGGGACTGGGCA+TGG 0.517428 7_2:+13757201 None:intergenic
GGAAGAGATAAAGAAGAAGG+TGG 0.522824 7_2:-13754051 Msa1050000:CDS
TCTGTCGTATATGTTTCCTT+CGG 0.526654 7_2:-13754446 Msa1050000:CDS
ATCCCTAAACTAATTGATGA+TGG 0.529148 7_2:-13756760 Msa1050000:CDS
CTAAAGGCAAGATCGTTAGT+TGG 0.531932 7_2:-13754283 Msa1050000:CDS
GTTTCATTAGTCACTGTGGT+TGG 0.532164 7_2:-13754220 Msa1050000:CDS
CAAAGCCCATCCCATATTGA+AGG 0.533037 7_2:+13756861 None:intergenic
TTTACCTTGTTGTCATTACT+CGG 0.537253 7_2:+13754335 None:intergenic
GCAAATGGCCAACACAAGAA+AGG 0.540571 7_2:+13754164 None:intergenic
CTAATGAAACAAGCTATAGC+AGG 0.547651 7_2:+13754233 None:intergenic
GAAACATATACGACAGATTG+AGG 0.549069 7_2:+13754452 None:intergenic
CTATGAAGTTAGGACATTGG+TGG 0.565705 7_2:-13754628 Msa1050000:CDS
CTTCAGGTTCCAAACCATCT+GGG 0.574566 7_2:+13757010 None:intergenic
AACATGACATAATTGCATGA+GGG 0.580442 7_2:+13757173 None:intergenic
AACTTTGTCACACTCCCAGA+TGG 0.588603 7_2:-13757024 Msa1050000:CDS
TCTATGAGCTTAGGAAGCAA+AGG 0.590890 7_2:+13756934 None:intergenic
AAACATGACATAATTGCATG+AGG 0.596705 7_2:+13757172 None:intergenic
ATCTTGTCAAAGGTTCGCCA+TGG 0.597686 7_2:+13754683 None:intergenic
GTTAAGGAGATCAAGTCCTA+AGG 0.597997 7_2:+13754382 None:intergenic
AAACTATGAAGTTAGGACAT+TGG 0.599087 7_2:-13754631 Msa1050000:CDS
AATTCCCTCATAGTGTATCC+CGG 0.601164 7_2:+13753842 None:intergenic
ACATGACATAATTGCATGAG+GGG 0.606077 7_2:+13757174 None:intergenic
GATGGAGTAATTGATTCAGC+AGG 0.610610 7_2:-13756742 Msa1050000:intron
AGAAGATGTTAATGATATGG+AGG 0.610988 7_2:-13756914 Msa1050000:CDS
ATATATTTGTGATGTGTGGA+AGG 0.614853 7_2:-13754117 Msa1050000:CDS
GCTTGTTTCATTAGTCACTG+TGG 0.617439 7_2:-13754224 Msa1050000:CDS
AGTCATATATTTGTGATGTG+TGG 0.621801 7_2:-13754121 Msa1050000:CDS
GAAACTAAAGGAGTTAACAC+TGG 0.629244 7_2:-13753988 Msa1050000:CDS
TGAGGGGATTTATATGACCT+GGG 0.629842 7_2:+13757190 None:intergenic
GGTTGGATTTGAATTAGACA+AGG 0.633037 7_2:-13754096 Msa1050000:CDS
CATGGAATAACAAGAAAGTG+AGG 0.646460 7_2:+13757219 None:intergenic
TAGTTCCAAGGAAATCGTCA+GGG 0.647249 7_2:+13754303 None:intergenic
TGAAACAAGCTATAGCAGGA+TGG 0.655376 7_2:+13754237 None:intergenic
ATGAGCTTAGGAAGCAAAGG+AGG 0.658953 7_2:+13756937 None:intergenic
CATTACTGCCAAACTACCGA+AGG 0.660154 7_2:+13754430 None:intergenic
ATGGAATAACAAGAAAGTGA+GGG 0.666417 7_2:+13757220 None:intergenic
TCGTCCGAGTAATGACAACA+AGG 0.724446 7_2:-13754339 Msa1050000:CDS
ACATATACGACAGATTGAGG+CGG 0.741046 7_2:+13754455 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGTTTTTAAAAAAACT+CGG - chr7_2:13754514-13754533 Msa1050000:CDS 10.0%
!! AAAATCTTATAAAAAAAAGT+TGG + chr7_2:13754841-13754860 None:intergenic 10.0%
!!! TATAAGATTTTTCTTTTTTA+AGG - chr7_2:13754850-13754869 Msa1050000:intron 10.0%
!! AAAAAAAAAAAAAAATTCAG+TGG + chr7_2:13755422-13755441 None:intergenic 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr7_2:13755806-13755825 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr7_2:13755807-13755826 None:intergenic 10.0%
!!! AACAATAATATTTCTATTGT+TGG - chr7_2:13753958-13753977 Msa1050000:CDS 15.0%
!!! TGTTAATTGTTTTGTTATTT+TGG - chr7_2:13754344-13754363 Msa1050000:CDS 15.0%
!! ATTAATATTGAAACTCATTT+GGG + chr7_2:13754723-13754742 None:intergenic 15.0%
!! TATTAATATTGAAACTCATT+TGG + chr7_2:13754724-13754743 None:intergenic 15.0%
!! TCATAATAAATCAAGAAATA+AGG + chr7_2:13755101-13755120 None:intergenic 15.0%
!!! AACTAATTAATTAAGGATTT+TGG - chr7_2:13755182-13755201 Msa1050000:intron 15.0%
!!! ACTAATTAATTAAGGATTTT+GGG - chr7_2:13755183-13755202 Msa1050000:intron 15.0%
!! GTAAATATGATTAACTAATT+CGG - chr7_2:13755267-13755286 Msa1050000:intron 15.0%
!!! AAAAAATGATTTTATTACAG+AGG - chr7_2:13755293-13755312 Msa1050000:intron 15.0%
!!! AAAAATGATTTTATTACAGA+GGG - chr7_2:13755294-13755313 Msa1050000:intron 15.0%
!!! AATCTTGTTAATTCTTTTAA+AGG + chr7_2:13755456-13755475 None:intergenic 15.0%
!! AATTAGAGTTATATTGTATT+AGG + chr7_2:13755741-13755760 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr7_2:13755805-13755824 None:intergenic 15.0%
!!! TGATTTAATTTATCCATTAT+AGG - chr7_2:13756272-13756291 Msa1050000:intron 15.0%
!!! TATTGTTGTTGATTTTTTTG+TGG + chr7_2:13753945-13753964 None:intergenic 20.0%
!! TATTATTGTTACCTTCAATA+TGG - chr7_2:13754173-13754192 Msa1050000:CDS 20.0%
!! ATTATTGTTACCTTCAATAT+GGG - chr7_2:13754174-13754193 Msa1050000:CDS 20.0%
!!! ATTTTTGAAAATAGTCAAAG+TGG + chr7_2:13754401-13754420 None:intergenic 20.0%
!! TTAATATTGAAACTCATTTG+GGG + chr7_2:13754722-13754741 None:intergenic 20.0%
!! AAAAAAAAAAAATTCAGTGG+TGG + chr7_2:13755419-13755438 None:intergenic 20.0%
!!! TAATTAACCTTCTTAGATTT+TGG - chr7_2:13755544-13755563 Msa1050000:intron 20.0%
!!! TGAAATGACTCAATTATTTT+GGG + chr7_2:13755694-13755713 None:intergenic 20.0%
!!! TTGAAATGACTCAATTATTT+TGG + chr7_2:13755695-13755714 None:intergenic 20.0%
!! AAAGTGGAATATATTGAATT+GGG + chr7_2:13755782-13755801 None:intergenic 20.0%
!! TTTGGTATAAATTCCTATAA+TGG + chr7_2:13756288-13756307 None:intergenic 20.0%
!!! CTAATTCTTTAAATTGGTTT+TGG + chr7_2:13756643-13756662 None:intergenic 20.0%
!! ATCTCAAAAACTTTATCAAT+TGG - chr7_2:13757113-13757132 Msa1050000:CDS 20.0%
!! TCTCAAAAACTTTATCAATT+GGG - chr7_2:13757114-13757133 Msa1050000:CDS 20.0%
! CATAGAAGATGTTAATGATA+TGG - chr7_2:13754128-13754147 Msa1050000:CDS 25.0%
!!! GAATTAAAGGTGTTTTTCTT+TGG - chr7_2:13754226-13754245 Msa1050000:CDS 25.0%
! TGCTATGTTGTTATACATAT+GGG - chr7_2:13754431-13754450 Msa1050000:CDS 25.0%
! TTATACATATGGGTAAAGTT+TGG - chr7_2:13754441-13754460 Msa1050000:CDS 25.0%
!!! TTTTTAAAAAAACTCGGTTC+CGG - chr7_2:13754520-13754539 Msa1050000:CDS 25.0%
!!! TAAAAAAAAGTTGGCTTTGA+TGG + chr7_2:13754832-13754851 None:intergenic 25.0%
! ATATTAAAATAACCAACCAC+TGG - chr7_2:13754903-13754922 Msa1050000:intron 25.0%
! TATTAAAATAACCAACCACT+GGG - chr7_2:13754904-13754923 Msa1050000:intron 25.0%
!!! CTACGTTTTTTTTTTACCAA+TGG + chr7_2:13755009-13755028 None:intergenic 25.0%
! CATTGGTAAAAAAAAAACGT+AGG - chr7_2:13755007-13755026 Msa1050000:intron 25.0%
!!! TTAATTAAGGATTTTGGGTT+AGG - chr7_2:13755188-13755207 Msa1050000:intron 25.0%
! ATTTCAACCAAAATCTAAGA+AGG + chr7_2:13755554-13755573 None:intergenic 25.0%
!!! TCTTAGATTTTGGTTGAAAT+TGG - chr7_2:13755554-13755573 Msa1050000:intron 25.0%
! GAAAGTGGAATATATTGAAT+TGG + chr7_2:13755783-13755802 None:intergenic 25.0%
! ACATGAAAATTGTTCTTTGT+TGG - chr7_2:13756106-13756125 Msa1050000:intron 25.0%
! ATTAAATACGATCTTGTCAA+AGG + chr7_2:13756375-13756394 None:intergenic 25.0%
! CTAAGGCTAATTCTTTAAAT+TGG + chr7_2:13756649-13756668 None:intergenic 25.0%
!!! CAATTTAAAGAATTAGCCTT+AGG - chr7_2:13756647-13756666 Msa1050000:intron 25.0%
! ATAAATTGATCAGTTGCAAA+TGG + chr7_2:13756899-13756918 None:intergenic 25.0%
! AATTAGACAAGGATGAAAAT+GGG - chr7_2:13756960-13756979 Msa1050000:CDS 25.0%
! AGAAAGATCATTGAAACTAA+AGG - chr7_2:13757045-13757064 Msa1050000:CDS 25.0%
! ATAATGCTTTAGTACTTGTT+TGG - chr7_2:13757144-13757163 Msa1050000:CDS 25.0%
!!! TGTTGTAAGATTGTTTTGTT+TGG - chr7_2:13757171-13757190 Msa1050000:CDS 25.0%
!!! TTTTGTTTGGTTTCTTTTTC+CGG - chr7_2:13757184-13757203 Msa1050000:CDS 25.0%
!! CATTTTAAGCACATTTCATT+TGG - chr7_2:13757227-13757246 Msa1050000:CDS 25.0%
GATACCCATTTGATTGAAAA+TGG + chr7_2:13753806-13753825 None:intergenic 30.0%
ATGGAATAACAAGAAAGTGA+GGG + chr7_2:13753828-13753847 None:intergenic 30.0%
AACATGACATAATTGCATGA+GGG + chr7_2:13753875-13753894 None:intergenic 30.0%
AAACATGACATAATTGCATG+AGG + chr7_2:13753876-13753895 None:intergenic 30.0%
!!! TGTCATGTTTTAACCAAACA+TGG - chr7_2:13753886-13753905 Msa1050000:three_prime_UTR 30.0%
!! CTTGACTTTGTTCATTTTTG+AGG + chr7_2:13753993-13754012 None:intergenic 30.0%
TTAACATCTTCTATGAGCTT+AGG + chr7_2:13754123-13754142 None:intergenic 30.0%
AGAAGATGTTAATGATATGG+AGG - chr7_2:13754131-13754150 Msa1050000:CDS 30.0%
ATCCCTAAACTAATTGATGA+TGG - chr7_2:13754285-13754304 Msa1050000:CDS 30.0%
! CTCCATCATCAATTAGTTTA+GGG + chr7_2:13754290-13754309 None:intergenic 30.0%
! ACTCCATCATCAATTAGTTT+AGG + chr7_2:13754291-13754310 None:intergenic 30.0%
ACTTATTGTTCATGCATTGT+TGG - chr7_2:13754371-13754390 Msa1050000:CDS 30.0%
CTGCTATGTTGTTATACATA+TGG - chr7_2:13754430-13754449 Msa1050000:CDS 30.0%
GATCAAAAACCTTAGATAGT+CGG + chr7_2:13754554-13754573 None:intergenic 30.0%
!!! CTTTTTGACATTTTGACTCA+AGG - chr7_2:13755512-13755531 Msa1050000:intron 30.0%
! TGGAAGTACAAATGTACAAT+AGG - chr7_2:13755574-13755593 Msa1050000:intron 30.0%
! GGAAGTACAAATGTACAATA+GGG - chr7_2:13755575-13755594 Msa1050000:intron 30.0%
GTAAATGGATCAGATATTCT+GGG + chr7_2:13755659-13755678 None:intergenic 30.0%
AGTAAATGGATCAGATATTC+TGG + chr7_2:13755660-13755679 None:intergenic 30.0%
!!! GGGACACTTTTTTTAGTAAA+TGG + chr7_2:13755674-13755693 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr7_2:13755798-13755817 None:intergenic 30.0%
! AGTATTTTACACTTGCAGTA+TGG + chr7_2:13756040-13756059 None:intergenic 30.0%
GTTAGTAGTTAATTCGTTGT+GGG + chr7_2:13756171-13756190 None:intergenic 30.0%
TGTTAGTAGTTAATTCGTTG+TGG + chr7_2:13756172-13756191 None:intergenic 30.0%
AAACTATGAAGTTAGGACAT+TGG - chr7_2:13756414-13756433 Msa1050000:intron 30.0%
TCACCAAAATTTCTACCAAT+TGG - chr7_2:13756485-13756504 Msa1050000:intron 30.0%
!!! TGTCATTTTCCATCATCAAT+GGG + chr7_2:13756511-13756530 None:intergenic 30.0%
AAGACATGACTTCATTAGAT+TGG - chr7_2:13756555-13756574 Msa1050000:intron 30.0%
! TTTACCTTGTTGTCATTACT+CGG + chr7_2:13756713-13756732 None:intergenic 30.0%
! TGGTTCAATATCTTTTTCTG+CGG + chr7_2:13756791-13756810 None:intergenic 30.0%
! AGTATAGAAGGTGTATATTC+TGG - chr7_2:13756854-13756873 Msa1050000:CDS 30.0%
AGTCATATATTTGTGATGTG+TGG - chr7_2:13756924-13756943 Msa1050000:CDS 30.0%
ATATATTTGTGATGTGTGGA+AGG - chr7_2:13756928-13756947 Msa1050000:CDS 30.0%
GAATTAGACAAGGATGAAAA+TGG - chr7_2:13756959-13756978 Msa1050000:CDS 30.0%
!! TGAAAATGGGTTAGTACTAA+AGG - chr7_2:13756973-13756992 Msa1050000:CDS 30.0%
AAAGGAAGAGATAAAGAAGA+AGG - chr7_2:13756991-13757010 Msa1050000:CDS 30.0%
CTGGATAACATAGTAGAAAA+TGG - chr7_2:13757076-13757095 Msa1050000:CDS 30.0%
!! TTTGTTTGGTTTCTTTTTCC+GGG - chr7_2:13757185-13757204 Msa1050000:CDS 30.0%
CATGGAATAACAAGAAAGTG+AGG + chr7_2:13753829-13753848 None:intergenic 35.0%
ACATGACATAATTGCATGAG+GGG + chr7_2:13753874-13753893 None:intergenic 35.0%
TGATCACTTCTATCATCTTC+AGG + chr7_2:13754054-13754073 None:intergenic 35.0%
TTGTTACCTTCAATATGGGA+TGG - chr7_2:13754178-13754197 Msa1050000:CDS 35.0%
TGTTACCTTCAATATGGGAT+GGG - chr7_2:13754179-13754198 Msa1050000:CDS 35.0%
GGACAAAGCTTAGGAATTAA+AGG - chr7_2:13754213-13754232 Msa1050000:CDS 35.0%
!!! AAAGGTGTTTTTCTTTGGAC+TGG - chr7_2:13754231-13754250 Msa1050000:CDS 35.0%
TTGATCCCACAATCAATTTG+TGG - chr7_2:13754568-13754587 Msa1050000:CDS 35.0%
TGATCCCACAATCAATTTGT+GGG - chr7_2:13754569-13754588 Msa1050000:CDS 35.0%
!!! CCTATGGTGTCTATTTTAGT+GGG + chr7_2:13754636-13754655 None:intergenic 35.0%
!! TCCTATGGTGTCTATTTTAG+TGG + chr7_2:13754637-13754656 None:intergenic 35.0%
CAATGGAGATAATCTTGATG+AGG + chr7_2:13754992-13755011 None:intergenic 35.0%
CTCATCAAGATTATCTCCAT+TGG - chr7_2:13754990-13755009 Msa1050000:intron 35.0%
! TTTTCCTCAAGTTTTTCCTC+AGG - chr7_2:13755068-13755087 Msa1050000:intron 35.0%
GAAATAAGGTATACTTCCTG+AGG + chr7_2:13755087-13755106 None:intergenic 35.0%
TTGGTAGGGATAATGCATAA+AGG - chr7_2:13755374-13755393 Msa1050000:intron 35.0%
AAAAAATTCAGTGGTGGTCA+GGG + chr7_2:13755413-13755432 None:intergenic 35.0%
AAAAAAATTCAGTGGTGGTC+AGG + chr7_2:13755414-13755433 None:intergenic 35.0%
ATCTGTGTGAAAAACCAAAC+TGG - chr7_2:13755827-13755846 Msa1050000:intron 35.0%
! ATTTTACACTTGCAGTATGG+TGG + chr7_2:13756037-13756056 None:intergenic 35.0%
TTGTTCTTTGTTGGAGATCT+AGG - chr7_2:13756115-13756134 Msa1050000:intron 35.0%
GAGAGAAAAATATTCGTAGC+AGG + chr7_2:13756149-13756168 None:intergenic 35.0%
GAGCTGAATTTCTTGATCTT+TGG + chr7_2:13756306-13756325 None:intergenic 35.0%
!!! ACGTTTTTAGTGTCCATCTT+TGG + chr7_2:13756341-13756360 None:intergenic 35.0%
GAGATGCAAACTATGAAGTT+AGG - chr7_2:13756407-13756426 Msa1050000:intron 35.0%
!! TGGTAGAAATTTTGGTGAGA+TGG + chr7_2:13756483-13756502 None:intergenic 35.0%
!!! CTGTCATTTTCCATCATCAA+TGG + chr7_2:13756512-13756531 None:intergenic 35.0%
ACAGCAACAAAAGTTCATTC+TGG - chr7_2:13756528-13756547 Msa1050000:intron 35.0%
GAAACATATACGACAGATTG+AGG + chr7_2:13756596-13756615 None:intergenic 35.0%
TCTGTCGTATATGTTTCCTT+CGG - chr7_2:13756599-13756618 Msa1050000:intron 35.0%
ATATGTTTCCTTCGGTAGTT+TGG - chr7_2:13756607-13756626 Msa1050000:intron 35.0%
! TCCTTAACAAGCCTTTTCTT+TGG - chr7_2:13756678-13756697 Msa1050000:intron 35.0%
!! TCCAAAGAAAAGGCTTGTTA+AGG + chr7_2:13756682-13756701 None:intergenic 35.0%
TAAAGGCAAGATCGTTAGTT+GGG - chr7_2:13756763-13756782 Msa1050000:CDS 35.0%
CTAATGAAACAAGCTATAGC+AGG + chr7_2:13756815-13756834 None:intergenic 35.0%
GGTTGGAATTCTAGTATAGA+AGG - chr7_2:13756842-13756861 Msa1050000:CDS 35.0%
GGTTGGATTTGAATTAGACA+AGG - chr7_2:13756949-13756968 Msa1050000:CDS 35.0%
GAAACTAAAGGAGTTAACAC+TGG - chr7_2:13757057-13757076 Msa1050000:CDS 35.0%
GATTTATATGACCTGGGACT+GGG + chr7_2:13753852-13753871 None:intergenic 40.0%
TGAGGGGATTTATATGACCT+GGG + chr7_2:13753858-13753877 None:intergenic 40.0%
ATGAGGGGATTTATATGACC+TGG + chr7_2:13753859-13753878 None:intergenic 40.0%
TGTGGCTGAATTCTGTGTTA+AGG + chr7_2:13753927-13753946 None:intergenic 40.0%
TCTATGAGCTTAGGAAGCAA+AGG + chr7_2:13754114-13754133 None:intergenic 40.0%
TTGGAAGTTGGACAAAGCTT+AGG - chr7_2:13754204-13754223 Msa1050000:CDS 40.0%
! GATGGAGTAATTGATTCAGC+AGG - chr7_2:13754303-13754322 Msa1050000:CDS 40.0%
GATCCCACAATCAATTTGTG+GGG - chr7_2:13754570-13754589 Msa1050000:CDS 40.0%
ATCCCACAATCAATTTGTGG+GGG - chr7_2:13754571-13754590 Msa1050000:CDS 40.0%
ACTACGCTCTGCCTTTAAAT+GGG + chr7_2:13754598-13754617 None:intergenic 40.0%
AACTACGCTCTGCCTTTAAA+TGG + chr7_2:13754599-13754618 None:intergenic 40.0%
CCCACTAAAATAGACACCAT+AGG - chr7_2:13754633-13754652 Msa1050000:CDS 40.0%
! GTTTGAGGTTCGATTTCCTA+TGG + chr7_2:13754652-13754671 None:intergenic 40.0%
TTGAAGTGTGTCTCTTCACA+AGG + chr7_2:13754674-13754693 None:intergenic 40.0%
TTGTGAAGAGACACACTTCA+AGG - chr7_2:13754673-13754692 Msa1050000:CDS 40.0%
GAATCAACGTAGTCTAGTCT+CGG + chr7_2:13754792-13754811 None:intergenic 40.0%
AAATAACCAACCACTGGGAT+AGG - chr7_2:13754909-13754928 Msa1050000:intron 40.0%
TGGGATAGGTTTAGCAATGT+AGG - chr7_2:13754923-13754942 Msa1050000:intron 40.0%
GGGATAGGTTTAGCAATGTA+GGG - chr7_2:13754924-13754943 Msa1050000:intron 40.0%
ACTTCCTGAGGAAAAACTTG+AGG + chr7_2:13755075-13755094 None:intergenic 40.0%
! TGAGCTTAACTCAGTTGGTA+GGG - chr7_2:13755360-13755379 Msa1050000:intron 40.0%
AGGGATAATGCATAAAGGTC+TGG - chr7_2:13755379-13755398 Msa1050000:intron 40.0%
GGGATAATGCATAAAGGTCT+GGG - chr7_2:13755380-13755399 Msa1050000:intron 40.0%
GGATAATGCATAAAGGTCTG+GGG - chr7_2:13755381-13755400 Msa1050000:intron 40.0%
AACAAGATTGTATTGCCGTG+TGG - chr7_2:13755467-13755486 Msa1050000:intron 40.0%
ACAAGATTGTATTGCCGTGT+GGG - chr7_2:13755468-13755487 Msa1050000:intron 40.0%
GGTACTATCACCAAGTACTT+GGG - chr7_2:13755596-13755615 Msa1050000:intron 40.0%
ATGTACTACACCCAAGTACT+TGG + chr7_2:13755609-13755628 None:intergenic 40.0%
! ATGGATCAGATATTCTGGGA+CGG + chr7_2:13755655-13755674 None:intergenic 40.0%
! CCAAACTGGCTCAAATATTC+CGG - chr7_2:13755841-13755860 Msa1050000:intron 40.0%
! CAAACTGGCTCAAATATTCC+GGG - chr7_2:13755842-13755861 Msa1050000:intron 40.0%
ATGATAGCTTCATGTGGTCT+CGG + chr7_2:13755901-13755920 None:intergenic 40.0%
AGACACATGATAGCTTCATG+TGG + chr7_2:13755907-13755926 None:intergenic 40.0%
! TGGAAGCAAAAGGTACAATG+CGG + chr7_2:13755980-13755999 None:intergenic 40.0%
! ACATGTCACTTGGAAGCAAA+AGG + chr7_2:13755990-13756009 None:intergenic 40.0%
TTTGCTTCCAAGTGACATGT+TGG - chr7_2:13755990-13756009 Msa1050000:intron 40.0%
TTATGAGCCAACATGTCACT+TGG + chr7_2:13756000-13756019 None:intergenic 40.0%
!! CGAGTAAGGTGGAGTTTTAT+AGG + chr7_2:13756199-13756218 None:intergenic 40.0%
CTTAGAATCCAAGACGAGTA+AGG + chr7_2:13756213-13756232 None:intergenic 40.0%
CTCTCCAAATATGCCAAAGA+TGG - chr7_2:13756325-13756344 Msa1050000:intron 40.0%
GTGTCCATCTTTGGCATATT+TGG + chr7_2:13756332-13756351 None:intergenic 40.0%
TGGACACTAAAAACGTTCCA+TGG - chr7_2:13756345-13756364 Msa1050000:intron 40.0%
CTATGAAGTTAGGACATTGG+TGG - chr7_2:13756417-13756436 Msa1050000:intron 40.0%
! GGGCCAATTGGTAGAAATTT+TGG + chr7_2:13756491-13756510 None:intergenic 40.0%
ACATATACGACAGATTGAGG+CGG + chr7_2:13756593-13756612 None:intergenic 40.0%
GTTAAGGAGATCAAGTCCTA+AGG + chr7_2:13756666-13756685 None:intergenic 40.0%
GGACGAACAATCCAAAGAAA+AGG + chr7_2:13756692-13756711 None:intergenic 40.0%
TAGTTCCAAGGAAATCGTCA+GGG + chr7_2:13756745-13756764 None:intergenic 40.0%
TTAGTTCCAAGGAAATCGTC+AGG + chr7_2:13756746-13756765 None:intergenic 40.0%
GACGATTTCCTTGGAACTAA+AGG - chr7_2:13756746-13756765 Msa1050000:CDS 40.0%
CTAAAGGCAAGATCGTTAGT+TGG - chr7_2:13756762-13756781 Msa1050000:CDS 40.0%
TGAAACAAGCTATAGCAGGA+TGG + chr7_2:13756811-13756830 None:intergenic 40.0%
GCTTGTTTCATTAGTCACTG+TGG - chr7_2:13756821-13756840 Msa1050000:CDS 40.0%
GTTTCATTAGTCACTGTGGT+TGG - chr7_2:13756825-13756844 Msa1050000:CDS 40.0%
CTGGTATACCTTTCTTGTGT+TGG - chr7_2:13756873-13756892 Msa1050000:CDS 40.0%
ATTTGTGATGTGTGGAAGGT+TGG - chr7_2:13756932-13756951 Msa1050000:CDS 40.0%
GGAAGAGATAAAGAAGAAGG+TGG - chr7_2:13756994-13757013 Msa1050000:CDS 40.0%
! TTTTTCCGGGATACACTATG+AGG - chr7_2:13757198-13757217 Msa1050000:CDS 40.0%
! TTTTCCGGGATACACTATGA+GGG - chr7_2:13757199-13757218 Msa1050000:CDS 40.0%
AATTCCCTCATAGTGTATCC+CGG + chr7_2:13757206-13757225 None:intergenic 40.0%
GGATTTATATGACCTGGGAC+TGG + chr7_2:13753853-13753872 None:intergenic 45.0%
AGTGATCTTGCTGCCATGTT+TGG + chr7_2:13753902-13753921 None:intergenic 45.0%
AACTTTGTCACACTCCCAGA+TGG - chr7_2:13754021-13754040 Msa1050000:CDS 45.0%
! CTTCAGGTTCCAAACCATCT+GGG + chr7_2:13754038-13754057 None:intergenic 45.0%
! TCTTCAGGTTCCAAACCATC+TGG + chr7_2:13754039-13754058 None:intergenic 45.0%
ATGAGCTTAGGAAGCAAAGG+AGG + chr7_2:13754111-13754130 None:intergenic 45.0%
CAAAGCCCATCCCATATTGA+AGG + chr7_2:13754187-13754206 None:intergenic 45.0%
! CTTCAATATGGGATGGGCTT+TGG - chr7_2:13754185-13754204 Msa1050000:CDS 45.0%
! ACCTTAGATAGTCGGCTCTT+GGG + chr7_2:13754546-13754565 None:intergenic 45.0%
! AACCTTAGATAGTCGGCTCT+TGG + chr7_2:13754547-13754566 None:intergenic 45.0%
CTACGCTCTGCCTTTAAATG+GGG + chr7_2:13754597-13754616 None:intergenic 45.0%
GTGTCTCTTCACAAGGTTTG+AGG + chr7_2:13754667-13754686 None:intergenic 45.0%
!! GTTGACCTAGTTGTTGGCTT+GGG + chr7_2:13754700-13754719 None:intergenic 45.0%
! TTTGGGGTTGACCTAGTTGT+TGG + chr7_2:13754706-13754725 None:intergenic 45.0%
CATTGCTAAACCTATCCCAG+TGG + chr7_2:13754922-13754941 None:intergenic 45.0%
GCAATGTAGGGTAGCTTATG+AGG - chr7_2:13754936-13754955 Msa1050000:intron 45.0%
GTGAGCTTAACTCAGTTGGT+AGG - chr7_2:13755359-13755378 Msa1050000:intron 45.0%
TTGTATTGCCGTGTGGGTAA+CGG - chr7_2:13755474-13755493 Msa1050000:intron 45.0%
GGGTACTATCACCAAGTACT+TGG - chr7_2:13755595-13755614 Msa1050000:intron 45.0%
!! ATCAGATATTCTGGGACGGA+GGG + chr7_2:13755651-13755670 None:intergenic 45.0%
CCGGAATATTTGAGCCAGTT+TGG + chr7_2:13755844-13755863 None:intergenic 45.0%
CTCAAATATTCCGGGATGGA+GGG - chr7_2:13755850-13755869 Msa1050000:intron 45.0%
TGATAGCTTCATGTGGTCTC+GGG + chr7_2:13755900-13755919 None:intergenic 45.0%
TACCCATCTCATGTGTTCTC+AGG - chr7_2:13755931-13755950 Msa1050000:intron 45.0%
GACCTGAGAACACATGAGAT+GGG + chr7_2:13755936-13755955 None:intergenic 45.0%
CGGTATAGAAAGTTCAGCAG+GGG + chr7_2:13755960-13755979 None:intergenic 45.0%
GCGGTATAGAAAGTTCAGCA+GGG + chr7_2:13755961-13755980 None:intergenic 45.0%
TGCGGTATAGAAAGTTCAGC+AGG + chr7_2:13755962-13755981 None:intergenic 45.0%
TTACACTTGCAGTATGGTGG+TGG + chr7_2:13756034-13756053 None:intergenic 45.0%
AAACTCCACCTTACTCGTCT+TGG - chr7_2:13756202-13756221 Msa1050000:intron 45.0%
AGAATCCAAGACGAGTAAGG+TGG + chr7_2:13756210-13756229 None:intergenic 45.0%
ATCTTGTCAAAGGTTCGCCA+TGG + chr7_2:13756365-13756384 None:intergenic 45.0%
ACCAATTGGCCCATTGATGA+TGG - chr7_2:13756499-13756518 Msa1050000:intron 45.0%
TCCATCATCAATGGGCCAAT+TGG + chr7_2:13756503-13756522 None:intergenic 45.0%
CATTACTGCCAAACTACCGA+AGG + chr7_2:13756618-13756637 None:intergenic 45.0%
CTTCGGTAGTTTGGCAGTAA+TGG - chr7_2:13756616-13756635 Msa1050000:intron 45.0%
TCGTCCGAGTAATGACAACA+AGG - chr7_2:13756706-13756725 Msa1050000:intron 45.0%
! CGATCTTGCCTTTAGTTCCA+AGG + chr7_2:13756757-13756776 None:intergenic 45.0%
GCAAATGGCCAACACAAGAA+AGG + chr7_2:13756884-13756903 None:intergenic 45.0%
!! ATATTAAAACTAATTAATTA+AGG - chr7_2:13755175-13755194 Msa1050000:intron 5.0%
TGTCACACTCCCAGATGGTT+TGG - chr7_2:13754026-13754045 Msa1050000:CDS 50.0%
!! ATGGGATGGGCTTTGGAAGT+TGG - chr7_2:13754192-13754211 Msa1050000:CDS 50.0%
! GACTGGCTCAGCAACTTCTT+TGG - chr7_2:13754248-13754267 Msa1050000:CDS 50.0%
GGCCCCCACAAATTGATTGT+GGG + chr7_2:13754576-13754595 None:intergenic 50.0%
TTTGTGGGGGCCCCATTTAA+AGG - chr7_2:13754584-13754603 Msa1050000:CDS 50.0%
AAGGTCCCAAGCCAACAACT+AGG - chr7_2:13754692-13754711 Msa1050000:CDS 50.0%
! GGTTGACCTAGTTGTTGGCT+TGG + chr7_2:13754701-13754720 None:intergenic 50.0%
GCTAAACCTATCCCAGTGGT+TGG + chr7_2:13754918-13754937 None:intergenic 50.0%
CCTTAGTTCGCTGAGTTGTG+AGG + chr7_2:13755232-13755251 None:intergenic 50.0%
CCTCACAACTCAGCGAACTA+AGG - chr7_2:13755229-13755248 Msa1050000:intron 50.0%
CCAACTGAGTTAAGCTCACG+AGG + chr7_2:13755358-13755377 None:intergenic 50.0%
CCTCGTGAGCTTAACTCAGT+TGG - chr7_2:13755355-13755374 Msa1050000:intron 50.0%
CCAACTTTCCGTTACCCACA+CGG + chr7_2:13755485-13755504 None:intergenic 50.0%
!! GATCAGATATTCTGGGACGG+AGG + chr7_2:13755652-13755671 None:intergenic 50.0%
CTGGCTCAAATATTCCGGGA+TGG - chr7_2:13755846-13755865 Msa1050000:intron 50.0%
GCTCAAATATTCCGGGATGG+AGG - chr7_2:13755849-13755868 Msa1050000:intron 50.0%
AGGGAGTAGAGATGTTCCAC+AGG - chr7_2:13755869-13755888 Msa1050000:intron 50.0%
GGGAGTAGAGATGTTCCACA+GGG - chr7_2:13755870-13755889 Msa1050000:intron 50.0%
CGACCTGAGAACACATGAGA+TGG + chr7_2:13755937-13755956 None:intergenic 50.0%
GCATACCCTGACGATTTCCT+TGG - chr7_2:13756737-13756756 Msa1050000:intron 50.0%
GTTATTCCATGCCCAGTCCC+AGG - chr7_2:13753838-13753857 Msa1050000:three_prime_UTR 55.0%
ATATGACCTGGGACTGGGCA+TGG + chr7_2:13753847-13753866 None:intergenic 55.0%
! TAGATAGTCGGCTCTTGGGC+CGG + chr7_2:13754542-13754561 None:intergenic 55.0%
GCCCAAGAGCCGACTATCTA+AGG - chr7_2:13754542-13754561 Msa1050000:CDS 55.0%
GGGCCCCCACAAATTGATTG+TGG + chr7_2:13754577-13754596 None:intergenic 55.0%
!! CCGTGTGGGTAACGGAAAGT+TGG - chr7_2:13755482-13755501 Msa1050000:intron 55.0%
!! GGACGGAGGGAGTACTTGTT+AGG + chr7_2:13755638-13755657 None:intergenic 55.0%
CATCTCTACTCCCTCCATCC+CGG + chr7_2:13755863-13755882 None:intergenic 55.0%
AGCTTCATGTGGTCTCGGGT+CGG + chr7_2:13755896-13755915 None:intergenic 55.0%
GTGGTCTCGGGTCGGCCCTG+TGG + chr7_2:13755888-13755907 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 13753802 13757265 13753802 ID=Msa1050000;Name=Msa1050000
chr7_2 mRNA 13753802 13757265 13753802 ID=Msa1050000-mRNA-1;Parent=Msa1050000;Name=Msa1050000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=15|1|1|1|1|1|2|121|452
chr7_2 exon 13753802 13754773 13753802 ID=Msa1050000-mRNA-1:exon:3396;Parent=Msa1050000-mRNA-1
chr7_2 exon 13756743 13757265 13756743 ID=Msa1050000-mRNA-1:exon:3395;Parent=Msa1050000-mRNA-1
chr7_2 five_prime_UTR 13757251 13757265 13757251 ID=Msa1050000-mRNA-1:five_prime_utr;Parent=Msa1050000-mRNA-1
chr7_2 CDS 13756743 13757250 13756743 ID=Msa1050000-mRNA-1:cds;Parent=Msa1050000-mRNA-1
chr7_2 CDS 13753923 13754773 13753923 ID=Msa1050000-mRNA-1:cds;Parent=Msa1050000-mRNA-1
chr7_2 three_prime_UTR 13753802 13753922 13753802 ID=Msa1050000-mRNA-1:three_prime_utr;Parent=Msa1050000-mRNA-1
Gene Sequence

>Msa1050000

ATGGGTATCCCTCACTTTCTTGTTATTCCATGCCCAGTCCCAGGTCATATAAATCCCCTCATGCAATTATGTCATGTTTTAACCAAACATGGCAGCAAGATCACTTTCCTTAACACAGAATTCAGCCACAAAAAAATCAACAACAATAATATTTCTATTGTTGGAAAAGACAGCCTCAAAAATGAACAAAGTCAAGAAACAATAAACTTTGTCACACTCCCAGATGGTTTGGAACCTGAAGATGATAGAAGTGATCAAAAGAAAGTTCTCTTCTCATTCAAAAGAAACATGCCTCCTTTGCTTCCTAAGCTCATAGAAGATGTTAATGATATGGAGGCTGAAAATAAGATTTCTTGTATTATTGTTACCTTCAATATGGGATGGGCTTTGGAAGTTGGACAAAGCTTAGGAATTAAAGGTGTTTTTCTTTGGACTGGCTCAGCAACTTCTTTGGCTTATTTTTATAGCATCCCTAAACTAATTGATGATGGAGTAATTGATTCAGCAGGAATTTATACCAAAGATCAAGAAATTCAGCTCTCTCCAAATATGCCAAAGATGGACACTAAAAACGTTCCATGGCGAACCTTTGACAAGATCGTATTTAATCATCTTGCACAAGAGATGCAAACTATGAAGTTAGGACATTGGTGGCTTTGCAACACAACTTATGATCTAGAGCATGCAACATTCTCCATCTCACCAAAATTTCTACCAATTGGCCCATTGATGATGGAAAATGACAGCAACAAAAGTTCATTCTGGCAAGAAGACATGACTTCATTAGATTGGCTAGATAAGCAACCGCCTCAATCTGTCGTATATGTTTCCTTCGGTAGTTTGGCAGTAATGGACCAAAACCAATTTAAAGAATTAGCCTTAGGACTTGATCTCCTTAACAAGCCTTTTCTTTGGATTGTTCGTCCGAGTAATGACAACAAGGTAAACTATGCATACCCTGACGATTTCCTTGGAACTAAAGGCAAGATCGTTAGTTGGGCACCGCAGAAAAAGATATTGAACCATCCTGCTATAGCTTGTTTCATTAGTCACTGTGGTTGGAATTCTAGTATAGAAGGTGTATATTCTGGTATACCTTTCTTGTGTTGGCCATTTGCAACTGATCAATTTATGAACAAGTCATATATTTGTGATGTGTGGAAGGTTGGATTTGAATTAGACAAGGATGAAAATGGGTTAGTACTAAAGGAAGAGATAAAGAAGAAGGTGGAACAATTGCTTGATGATCAAGATGTAAAAGAAAGATCATTGAAACTAAAGGAGTTAACACTGGATAACATAGTAGAAAATGGTCAATCTTCAAAGAATCTCAAAAACTTTATCAATTGGGCAATGTAA

Protein sequence

>Msa1050000

MGIPHFLVIPCPVPGHINPLMQLCHVLTKHGSKITFLNTEFSHKKINNNNISIVGKDSLKNEQSQETINFVTLPDGLEPEDDRSDQKKVLFSFKRNMPPLLPKLIEDVNDMEAENKISCIIVTFNMGWALEVGQSLGIKGVFLWTGSATSLAYFYSIPKLIDDGVIDSAGIYTKDQEIQLSPNMPKMDTKNVPWRTFDKIVFNHLAQEMQTMKLGHWWLCNTTYDLEHATFSISPKFLPIGPLMMENDSNKSSFWQEDMTSLDWLDKQPPQSVVYVSFGSLAVMDQNQFKELALGLDLLNKPFLWIVRPSNDNKVNYAYPDDFLGTKGKIVSWAPQKKILNHPAIACFISHCGWNSSIEGVYSGIPFLCWPFATDQFMNKSYICDVWKVGFELDKDENGLVLKEEIKKKVEQLLDDQDVKERSLKLKELTLDNIVENGQSSKNLKNFINWAM*