AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1008410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008410 MtrunA17_Chr7g0218811 89.381 452 36 2 1 452 11 450 0.0 831
Msa1008410 MtrunA17_Chr7g0218821 81.375 451 83 1 1 451 1 450 0.0 765
Msa1008410 MtrunA17_Chr7g0218831 67.038 449 135 2 3 451 4 439 0.0 630
Msa1008410 MtrunA17_Chr7g0218841 66.444 450 137 3 3 451 4 440 0.0 619
Msa1008410 MtrunA17_Chr7g0218791 56.637 452 187 4 1 451 1 444 0.0 539
Msa1008410 MtrunA17_Chr3g0118661 33.485 439 253 11 4 414 12 439 8.79e-74 239
Msa1008410 MtrunA17_Chr3g0078841 31.866 477 282 13 4 448 9 474 4.31e-71 233
Msa1008410 MtrunA17_Chr5g0426431 32.985 479 276 15 3 449 10 475 6.61e-71 232
Msa1008410 MtrunA17_Chr3g0118671 31.723 476 282 12 5 448 6 470 2.25e-70 230
Msa1008410 MtrunA17_Chr3g0118691 31.590 478 282 13 4 448 14 479 3.82e-70 230
Msa1008410 MtrunA17_Chr3g0092641 32.353 476 277 14 3 449 10 469 4.58e-70 229
Msa1008410 MtrunA17_Chr3g0118701 32.747 455 264 14 4 428 14 456 1.42e-68 226
Msa1008410 MtrunA17_Chr3g0118771 31.381 478 283 15 4 448 20 485 2.73e-68 225
Msa1008410 MtrunA17_Chr6g0454331 30.595 487 281 14 4 449 6 476 4.32e-68 224
Msa1008410 MtrunA17_Chr6g0454341 30.818 477 287 11 4 448 9 474 4.87e-68 224
Msa1008410 MtrunA17_Chr6g0454401 31.809 481 280 15 4 448 9 477 8.51e-68 224
Msa1008410 MtrunA17_Chr2g0278711 31.106 479 283 15 4 449 10 474 9.95e-68 224
Msa1008410 MtrunA17_Chr6g0454151 31.818 484 281 15 4 452 9 478 1.79e-67 223
Msa1008410 MtrunA17_Chr3g0118711 31.648 455 269 12 4 428 12 454 1.84e-67 223
Msa1008410 MtrunA17_Chr6g0454301 31.027 477 286 12 4 448 262 727 1.07e-66 226
Msa1008410 MtrunA17_Chr6g0454301 34.914 232 133 5 235 452 3 230 1.47e-38 148
Msa1008410 MtrunA17_Chr7g0217881 31.489 470 277 12 4 448 9 458 1.18e-66 220
Msa1008410 MtrunA17_Chr5g0448551 30.217 460 290 11 1 448 3 443 1.44e-66 220
Msa1008410 MtrunA17_Chr8g0336331 30.526 475 288 12 5 448 10 473 2.15e-66 220
Msa1008410 MtrunA17_Chr6g0454261 31.546 485 275 16 4 448 9 476 9.96e-66 218
Msa1008410 MtrunA17_Chr6g0454131 30.962 478 286 12 4 448 9 475 1.22e-64 216
Msa1008410 MtrunA17_Chr6g0454191 30.417 480 288 14 4 448 9 477 1.51e-64 215
Msa1008410 MtrunA17_Chr6g0454181 30.753 465 266 14 4 432 9 453 2.89e-64 214
Msa1008410 MtrunA17_Chr6g0454321 30.131 458 277 13 5 430 10 456 2.92e-64 218
Msa1008410 MtrunA17_Chr6g0464871 30.064 469 279 10 3 448 21 463 3.74e-64 214
Msa1008410 MtrunA17_Chr6g0454291 29.938 481 288 13 4 448 6 473 5.66e-64 214
Msa1008410 MtrunA17_Chr6g0453961 29.897 485 292 13 4 452 18 490 8.17e-64 214
Msa1008410 MtrunA17_Chr5g0412111 30.165 484 280 12 1 450 1 460 1.13e-63 213
Msa1008410 MtrunA17_Chr6g0454121 30.753 478 287 12 4 448 9 475 1.74e-63 213
Msa1008410 MtrunA17_Chr7g0249981 29.211 469 279 12 5 449 25 464 1.91e-63 213
Msa1008410 MtrunA17_Chr6g0454141 29.375 480 292 12 4 448 9 476 2.55e-63 212
Msa1008410 MtrunA17_Chr6g0454211 30.000 480 289 14 4 448 296 763 6.22e-63 217
Msa1008410 MtrunA17_Chr6g0454211 36.250 160 62 5 221 368 105 236 9.21e-22 98.6
Msa1008410 MtrunA17_Chr6g0464861 30.149 471 273 12 4 448 10 450 7.43e-63 210
Msa1008410 MtrunA17_Chr6g0454201 31.667 480 281 14 4 448 10 477 8.47e-63 211
Msa1008410 MtrunA17_Chr6g0453951 29.132 484 296 14 4 452 56 527 1.28e-62 211
Msa1008410 MtrunA17_Chr6g0464921 31.210 471 272 14 4 449 10 453 7.35e-62 207
Msa1008410 MtrunA17_Chr7g0250001 29.764 467 279 13 5 449 6 445 3.11e-61 206
Msa1008410 MtrunA17_Chr6g0464841 30.064 469 279 11 3 448 9 451 4.16e-61 206
Msa1008410 MtrunA17_Chr8g0359821 30.435 460 268 13 4 430 9 449 6.74e-61 206
Msa1008410 MtrunA17_Chr3g0118751 31.013 474 261 16 4 448 5 441 1.29e-60 204
Msa1008410 MtrunA17_Chr6g0454361 29.792 480 292 14 4 449 10 478 3.12e-60 204
Msa1008410 MtrunA17_Chr6g0464881 28.330 473 290 11 3 452 9 455 4.96e-60 203
Msa1008410 MtrunA17_Chr4g0050341 30.108 465 269 13 4 429 18 465 5.49e-60 204
Msa1008410 MtrunA17_Chr5g0414331 30.361 471 272 16 5 450 13 452 6.72e-60 202
Msa1008410 MtrunA17_Chr4g0053501 28.753 473 288 14 5 449 11 462 5.98e-59 201
Msa1008410 MtrunA17_Chr5g0412131 30.208 480 284 13 2 450 9 468 6.84e-59 200
Msa1008410 MtrunA17_Chr5g0423981 29.474 475 271 13 4 452 9 445 7.26e-59 199
Msa1008410 MtrunA17_Chr5g0414321 29.060 468 286 12 5 452 11 452 1.06e-58 199
Msa1008410 MtrunA17_Chr3g0112761 32.409 469 262 17 5 448 8 446 1.66e-58 199
Msa1008410 MtrunA17_Chr6g0452771 30.083 482 286 13 4 448 9 476 1.74e-58 199
Msa1008410 MtrunA17_Chr4g0053321 28.330 473 288 12 6 449 27 477 1.50e-57 197
Msa1008410 MtrunA17_Chr1g0207981 27.097 465 312 8 5 449 13 470 4.19e-57 196
Msa1008410 MtrunA17_Chr7g0249931 29.412 476 271 16 5 449 40 481 7.15e-55 190
Msa1008410 MtrunA17_Chr6g0454351 27.122 483 290 13 4 452 11 465 5.77e-54 187
Msa1008410 MtrunA17_Chr3g0112771 30.490 469 267 15 7 449 14 449 7.62e-54 186
Msa1008410 MtrunA17_Chr8g0377921 29.039 489 277 19 3 449 1 461 2.72e-53 185
Msa1008410 MtrunA17_Chr3g0121991 28.454 485 287 16 5 449 79 543 1.11e-52 185
Msa1008410 MtrunA17_Chr5g0412101 28.690 481 287 13 4 450 11 469 3.91e-52 182
Msa1008410 MtrunA17_Chr3g0098111 29.079 478 285 17 5 448 9 466 4.02e-52 182
Msa1008410 MtrunA17_Chr6g0454251 29.323 399 240 12 4 369 6 395 8.89e-52 179
Msa1008410 MtrunA17_Chr8g0365811 29.325 474 287 17 7 448 497 954 4.44e-51 186
Msa1008410 MtrunA17_Chr8g0365811 31.002 429 263 14 5 408 9 429 2.77e-48 177
Msa1008410 MtrunA17_Chr1g0207861 30.335 478 279 18 5 448 8 465 5.32e-51 179
Msa1008410 MtrunA17_Chr1g0161351 30.490 469 290 16 5 448 37 494 1.59e-50 179
Msa1008410 MtrunA17_Chr8g0380531 27.234 470 293 13 5 449 10 455 3.83e-50 176
Msa1008410 MtrunA17_Chr3g0122001 28.163 490 282 18 5 449 486 950 5.88e-50 182
Msa1008410 MtrunA17_Chr3g0122001 26.844 488 292 17 5 449 6 471 2.96e-45 169
Msa1008410 MtrunA17_Chr1g0207971 29.574 470 278 17 5 448 8 450 1.25e-49 175
Msa1008410 MtrunA17_Chr4g0032331 29.724 471 285 18 3 452 5 450 3.78e-49 174
Msa1008410 MtrunA17_Chr6g0454221 38.865 229 121 4 235 448 3 227 6.57e-49 169
Msa1008410 MtrunA17_Chr1g0207831 29.645 479 274 16 6 448 9 460 9.47e-49 173
Msa1008410 MtrunA17_Chr1g0207931 28.448 464 253 13 5 449 92 495 2.59e-48 172
Msa1008410 MtrunA17_Chr5g0401721 29.202 476 287 18 7 449 10 468 1.12e-47 170
Msa1008410 MtrunA17_Chr6g0454271 36.546 249 136 6 218 448 39 283 5.15e-47 164
Msa1008410 MtrunA17_Chr8g0377941 27.802 464 301 13 7 449 9 459 6.93e-47 168
Msa1008410 MtrunA17_Chr8g0347281 28.452 478 276 18 4 444 17 465 8.47e-47 168
Msa1008410 MtrunA17_Chr5g0431441 28.298 470 286 13 5 448 18 462 2.15e-46 167
Msa1008410 MtrunA17_Chr7g0243631 27.105 487 298 15 5 449 13 484 5.30e-46 166
Msa1008410 MtrunA17_Chr7g0232401 31.897 348 204 11 129 449 124 465 7.75e-46 165
Msa1008410 MtrunA17_Chr1g0207951 28.931 477 273 17 5 448 124 567 7.99e-46 171
Msa1008410 MtrunA17_Chr1g0207951 27.521 476 287 15 5 448 656 1105 2.24e-40 154
Msa1008410 MtrunA17_Chr8g0335161 31.525 387 209 14 101 447 92 462 1.73e-45 164
Msa1008410 MtrunA17_Chr7g0243681 27.766 479 300 13 5 449 11 477 6.06e-45 163
Msa1008410 MtrunA17_Chr5g0426401 34.471 293 162 10 182 449 21 308 7.92e-45 159
Msa1008410 MtrunA17_Chr7g0275511 27.198 489 280 15 4 447 14 471 1.15e-44 162
Msa1008410 MtrunA17_Chr5g0393591 27.214 463 277 14 3 449 15 433 2.61e-44 160
Msa1008410 MtrunA17_Chr6g0486251 26.752 471 295 15 8 447 9 460 1.20e-43 159
Msa1008410 MtrunA17_Chr6g0486201 26.752 471 295 15 8 447 9 460 1.20e-43 159
Msa1008410 MtrunA17_Chr5g0431421 27.883 477 272 16 5 449 10 446 1.24e-43 159
Msa1008410 MtrunA17_Chr6g0459311 26.667 480 284 17 8 447 16 467 2.07e-43 159
Msa1008410 MtrunA17_Chr7g0275681 27.629 485 297 17 3 449 10 478 4.84e-43 158
Msa1008410 MtrunA17_Chr8g0347271 26.752 471 293 14 4 444 18 466 5.31e-43 157
Msa1008410 MtrunA17_Chr5g0431401 26.737 475 280 17 5 449 10 446 9.85e-43 156
Msa1008410 MtrunA17_Chr7g0249961 36.170 235 130 6 230 449 28 257 2.26e-42 150
Msa1008410 MtrunA17_Chr5g0431361 27.426 474 287 16 2 449 9 451 2.29e-42 155
Msa1008410 MtrunA17_Chr3g0118721 35.345 232 129 6 234 448 59 286 1.15e-41 149
Msa1008410 MtrunA17_Chr7g0243771 27.235 481 301 13 5 449 6 473 1.41e-41 154
Msa1008410 MtrunA17_Chr8g0335141 26.778 478 295 17 4 447 8 464 1.47e-41 154
Msa1008410 MtrunA17_Chr8g0336691 28.841 371 230 8 101 443 1006 1370 2.22e-41 157
Msa1008410 MtrunA17_Chr8g0336691 25.413 484 293 12 5 447 13 469 1.38e-39 152
Msa1008410 MtrunA17_Chr8g0336691 29.076 368 214 10 101 447 567 908 2.64e-35 139
Msa1008410 MtrunA17_Chr4g0060511 27.423 485 302 14 5 449 11 485 4.49e-41 153
Msa1008410 MtrunA17_Chr6g0462571 30.650 323 191 10 129 427 124 437 5.40e-41 152
Msa1008410 MtrunA17_Chr7g0265041 25.813 492 316 14 1 452 7 489 6.72e-41 152
Msa1008410 MtrunA17_Chr6g0449931 27.883 477 291 14 5 447 6 463 1.11e-40 151
Msa1008410 MtrunA17_Chr5g0431371 26.050 476 286 16 3 449 8 446 1.30e-40 150
Msa1008410 MtrunA17_Chr7g0232411 28.533 375 234 11 101 447 93 461 1.37e-40 151
Msa1008410 MtrunA17_Chr3g0079731 27.054 499 282 20 6 449 7 478 3.10e-40 150
Msa1008410 MtrunA17_Chr5g0429711 28.118 473 288 19 5 449 11 459 3.25e-40 150
Msa1008410 MtrunA17_Chr6g0462531 27.368 475 280 16 6 441 5 453 3.43e-40 150
Msa1008410 MtrunA17_Chr8g0373301 28.099 363 217 11 117 447 112 462 5.36e-40 149
Msa1008410 MtrunA17_Chr8g0336651 28.571 378 233 8 101 447 868 1239 7.22e-40 153
Msa1008410 MtrunA17_Chr8g0336651 36.287 237 118 8 240 451 237 465 2.60e-36 142
Msa1008410 MtrunA17_Chr8g0336651 32.197 264 136 6 202 447 532 770 6.30e-36 141
Msa1008410 MtrunA17_Chr7g0243931 25.104 482 314 12 5 449 17 488 1.00e-39 149
Msa1008410 MtrunA17_Chr6g0462541 29.539 369 216 11 108 447 106 459 1.27e-39 148
Msa1008410 MtrunA17_Chr6g0462551 29.360 344 205 12 131 447 128 460 1.47e-39 148
Msa1008410 MtrunA17_Chr7g0243801 26.582 474 305 12 9 449 11 474 1.54e-39 148
Msa1008410 MtrunA17_Chr8g0339451 29.508 366 215 12 117 447 102 459 1.71e-39 148
Msa1008410 MtrunA17_Chr5g0442561 24.949 489 298 19 9 452 9 473 1.88e-39 148
Msa1008410 MtrunA17_Chr1g0153451 27.733 375 235 9 101 447 93 459 2.16e-39 147
Msa1008410 MtrunA17_Chr4g0044511 26.205 477 293 15 5 443 40 495 2.84e-39 148
Msa1008410 MtrunA17_Chr7g0232391 30.133 375 228 12 101 447 93 461 4.22e-39 147
Msa1008410 MtrunA17_Chr7g0243761 27.426 474 283 16 5 449 11 452 6.15e-39 146
Msa1008410 MtrunA17_Chr8g0334851 27.792 403 238 14 80 444 75 462 7.92e-39 146
Msa1008410 MtrunA17_Chr1g0153461 37.143 210 113 5 259 449 1 210 1.11e-38 139
Msa1008410 MtrunA17_Chr8g0339441 37.981 208 107 5 262 447 218 425 1.15e-38 145
Msa1008410 MtrunA17_Chr5g0440421 24.696 494 313 16 4 449 9 491 1.26e-38 146
Msa1008410 MtrunA17_Chr7g0243871 27.386 482 289 16 7 449 11 470 1.42e-38 145
Msa1008410 MtrunA17_Chr7g0243861 24.540 489 308 13 5 449 14 485 2.07e-38 145
Msa1008410 MtrunA17_Chr8g0339461 32.414 290 156 9 188 447 188 467 2.27e-38 145
Msa1008410 MtrunA17_Chr7g0232311 30.861 337 194 12 141 448 134 460 2.61e-38 144
Msa1008410 MtrunA17_Chr6g0454171 31.804 327 159 14 147 448 19 306 3.12e-38 141
Msa1008410 MtrunA17_Chr7g0235051 25.577 477 277 13 5 444 11 446 3.58e-38 144
Msa1008410 MtrunA17_Chr7g0232331 30.252 357 213 14 101 428 93 442 7.95e-38 143
Msa1008410 MtrunA17_Chr5g0442541 24.845 483 299 15 9 452 9 466 1.07e-37 143
Msa1008410 MtrunA17_Chr5g0442601 24.280 486 313 18 7 452 406 876 1.21e-37 146
Msa1008410 MtrunA17_Chr5g0442601 33.918 171 93 5 239 389 166 336 4.10e-24 105
Msa1008410 MtrunA17_Chr7g0243951 25.572 481 312 14 5 449 11 481 1.86e-37 143
Msa1008410 MtrunA17_Chr8g0336731 27.822 381 230 12 101 448 119 487 1.91e-37 143
Msa1008410 MtrunA17_Chr8g0334861 29.155 367 219 11 115 449 104 461 2.86e-37 142
Msa1008410 MtrunA17_Chr7g0243781 26.556 482 292 15 9 449 13 473 2.90e-37 142
Msa1008410 MtrunA17_Chr7g0265141 27.108 498 287 19 5 449 9 483 5.51e-37 141
Msa1008410 MtrunA17_Chr6g0462521 29.738 343 204 11 120 441 113 439 7.20e-37 140
Msa1008410 MtrunA17_Chr5g0442581 24.435 487 307 16 9 452 9 477 9.68e-37 141
Msa1008410 MtrunA17_Chr8g0361371 26.186 485 287 19 8 448 10 467 1.27e-36 140
Msa1008410 MtrunA17_Chr5g0442521 23.222 478 319 10 9 450 9 474 2.14e-36 139
Msa1008410 MtrunA17_Chr4g0066221 27.347 490 287 20 5 449 13 478 2.18e-36 139
Msa1008410 MtrunA17_Chr4g0066261 25.971 489 296 16 5 449 13 479 2.42e-36 139
Msa1008410 MtrunA17_Chr4g0044521 26.407 462 280 17 15 441 19 455 5.03e-36 138
Msa1008410 MtrunA17_Chr8g0336741 26.652 454 290 12 2 429 10 446 5.26e-36 138
Msa1008410 MtrunA17_Chr2g0307961 25.887 479 290 13 4 445 12 462 7.24e-36 138
Msa1008410 MtrunA17_Chr8g0355011 27.052 329 190 8 117 431 46 338 7.97e-36 135
Msa1008410 MtrunA17_Chr3g0106231 26.891 476 271 16 5 448 18 448 1.65e-35 137
Msa1008410 MtrunA17_Chr7g0232341 36.493 211 113 6 237 428 234 442 2.33e-35 136
Msa1008410 MtrunA17_Chr5g0419761 26.531 490 298 17 5 448 9 482 2.55e-35 137
Msa1008410 MtrunA17_Chr8g0339601 32.463 268 149 8 210 447 61 326 4.38e-35 133
Msa1008410 MtrunA17_Chr7g0265101 24.224 483 319 16 5 448 9 483 6.15e-35 136
Msa1008410 MtrunA17_Chr4g0011051 23.529 476 317 14 5 441 9 476 9.09e-35 135
Msa1008410 MtrunA17_Chr4g0066131 24.435 487 293 16 9 450 17 473 1.24e-34 134
Msa1008410 MtrunA17_Chr2g0329111 25.786 477 286 14 7 439 8 460 1.31e-34 135
Msa1008410 MtrunA17_Chr8g0339631 27.348 362 225 11 117 447 110 464 1.34e-34 134
Msa1008410 MtrunA17_Chr5g0442491 22.917 480 321 12 9 452 9 475 1.69e-34 134
Msa1008410 MtrunA17_Chr8g0366391 26.186 485 298 16 5 448 9 474 1.83e-34 134
Msa1008410 MtrunA17_Chr5g0410941 25.720 486 297 18 5 449 25 487 1.94e-34 134
Msa1008410 MtrunA17_Chr7g0265151 25.458 491 300 16 5 448 9 480 2.60e-34 134
Msa1008410 MtrunA17_Chr8g0334831 24.746 493 293 18 8 448 9 475 2.97e-34 134
Msa1008410 MtrunA17_Chr5g0403641 33.878 245 122 10 219 428 237 476 3.29e-34 134
Msa1008410 MtrunA17_Chr4g0066281 26.240 484 285 17 6 449 13 464 3.36e-34 133
Msa1008410 MtrunA17_Chr5g0448521 25.067 371 243 10 115 452 100 468 3.54e-34 133
Msa1008410 MtrunA17_Chr4g0066151 25.309 486 288 17 9 449 22 477 1.00e-33 132
Msa1008410 MtrunA17_Chr7g0265051 25.101 494 299 19 5 448 9 481 1.43e-33 132
Msa1008410 MtrunA17_Chr4g0066201 26.543 486 277 19 9 449 22 472 1.55e-33 132
Msa1008410 MtrunA17_Chr4g0044481 27.818 417 223 17 5 390 27 396 2.75e-33 130
Msa1008410 MtrunA17_Chr5g0429681 26.059 472 302 17 6 449 45 497 3.52e-33 131
Msa1008410 MtrunA17_Chr5g0432731 32.117 274 156 8 203 452 30 297 3.68e-33 127
Msa1008410 MtrunA17_Chr4g0066171 27.088 491 267 20 9 449 25 474 4.47e-33 130
Msa1008410 MtrunA17_Chr2g0294931 25.052 483 302 15 9 449 15 479 6.99e-33 130
Msa1008410 MtrunA17_Chr5g0428081 24.845 483 307 15 5 449 13 477 1.19e-32 129
Msa1008410 MtrunA17_Chr4g0029131 27.214 463 278 15 5 437 12 445 1.79e-32 130
Msa1008410 MtrunA17_Chr5g0442511 30.085 236 139 7 239 450 259 492 2.03e-32 129
Msa1008410 MtrunA17_Chr4g0014061 31.696 224 129 6 246 450 253 471 2.11e-32 128
Msa1008410 MtrunA17_Chr4g0072761 25.486 463 298 16 5 448 15 449 2.17e-32 128
Msa1008410 MtrunA17_Chr7g0218311 25.156 481 307 13 5 449 18 481 4.75e-32 127
Msa1008410 MtrunA17_Chr5g0419771 25.296 506 284 20 5 448 36 509 5.28e-32 127
Msa1008410 MtrunA17_Chr4g0072771 24.183 459 312 14 5 448 25 462 2.03e-31 125
Msa1008410 MtrunA17_Chr1g0173121 30.088 226 138 4 239 448 238 459 4.08e-31 124
Msa1008410 MtrunA17_Chr1g0159551 22.961 466 304 12 10 448 19 456 4.35e-31 124
Msa1008410 MtrunA17_Chr8g0374971 26.283 487 291 20 8 449 15 478 5.13e-31 124
Msa1008410 MtrunA17_Chr6g0454371 34.286 175 105 3 284 452 1 171 7.95e-31 117
Msa1008410 MtrunA17_Chr3g0106251 33.163 196 118 3 260 448 101 290 1.02e-30 120
Msa1008410 MtrunA17_Chr8g0336261 39.007 141 79 2 284 421 1 137 1.08e-30 115
Msa1008410 MtrunA17_Chr8g0382021 22.947 475 302 13 10 448 39 485 1.31e-30 123
Msa1008410 MtrunA17_Chr7g0243711 35.266 207 115 5 262 449 108 314 1.63e-30 120
Msa1008410 MtrunA17_Chr4g0044501 25.527 474 297 14 5 441 10 464 1.84e-30 123
Msa1008410 MtrunA17_Chr2g0302991 24.486 486 288 14 9 449 9 460 1.87e-30 122
Msa1008410 MtrunA17_Chr6g0463861 26.349 482 293 18 5 448 13 470 3.94e-30 122
Msa1008410 MtrunA17_Chr3g0079711 32.973 185 102 6 287 449 2 186 5.02e-30 115
Msa1008410 MtrunA17_Chr8g0374931 25.104 482 309 16 5 449 13 479 1.44e-29 120
Msa1008410 MtrunA17_Chr8g0374901 25.926 486 292 17 8 449 15 476 1.47e-29 120
Msa1008410 MtrunA17_Chr5g0409591 31.818 242 128 7 219 423 214 455 1.71e-29 120
Msa1008410 MtrunA17_Chr6g0463891 25.667 487 298 16 7 448 14 481 2.58e-29 120
Msa1008410 MtrunA17_Chr7g0243911 35.870 184 102 4 262 429 22 205 3.36e-29 114
Msa1008410 MtrunA17_Chr2g0302961 23.899 477 305 15 9 449 9 463 3.75e-29 119
Msa1008410 MtrunA17_Chr2g0294921 24.738 477 315 14 5 448 162 627 6.93e-29 119
Msa1008410 MtrunA17_Chr5g0401851 23.554 484 302 18 7 443 12 474 1.32e-28 117
Msa1008410 MtrunA17_Chr1g0179901 30.672 238 136 8 240 448 253 490 1.85e-28 117
Msa1008410 MtrunA17_Chr8g0370941 30.738 244 129 7 240 446 243 483 2.25e-28 117
Msa1008410 MtrunA17_Chr7g0265111 32.367 207 120 6 262 448 306 512 2.90e-28 117
Msa1008410 MtrunA17_Chr5g0416741 23.139 497 298 15 7 449 15 481 3.10e-28 117
Msa1008410 MtrunA17_Chr7g0243851 32.850 207 120 4 262 449 234 440 3.25e-28 116
Msa1008410 MtrunA17_Chr8g0374941 26.609 466 273 21 8 429 14 454 4.33e-28 118
Msa1008410 MtrunA17_Chr8g0374941 24.082 490 298 14 8 449 952 1415 1.25e-26 113
Msa1008410 MtrunA17_Chr8g0374941 24.160 476 272 15 8 429 479 919 3.03e-24 106
Msa1008410 MtrunA17_Chr6g0463851 24.797 492 299 17 5 449 13 480 1.07e-27 115
Msa1008410 MtrunA17_Chr8g0350881 23.218 491 305 15 6 449 13 478 1.55e-27 114
Msa1008410 MtrunA17_Chr7g0243611 40.000 135 75 2 262 390 136 270 2.62e-27 110
Msa1008410 MtrunA17_Chr8g0369341 25.210 476 307 18 5 448 7 465 4.89e-27 113
Msa1008410 MtrunA17_Chr7g0241781 26.154 390 231 13 5 379 9 356 6.80e-27 112
Msa1008410 MtrunA17_Chr2g0294941 33.019 212 119 6 228 418 133 342 9.14e-27 110
Msa1008410 MtrunA17_Chr7g0243811 25.245 408 235 14 17 389 1 373 1.53e-26 110
Msa1008410 MtrunA17_Chr1g0196851 24.569 464 292 16 5 437 49 485 2.63e-26 111
Msa1008410 MtrunA17_Chr5g0420801 23.769 467 317 15 5 449 7 456 2.66e-26 110
Msa1008410 MtrunA17_Chr8g0361411 24.313 473 299 15 5 448 8 450 3.05e-26 110
Msa1008410 MtrunA17_Chr7g0250021 28.446 341 191 13 5 323 12 321 4.39e-26 108
Msa1008410 MtrunA17_Chr2g0319761 26.875 480 266 18 5 441 8 445 1.30e-25 108
Msa1008410 MtrunA17_Chr8g0367221 25.761 427 256 17 5 398 12 410 1.70e-25 110
Msa1008410 MtrunA17_Chr8g0367221 24.706 425 264 13 5 398 798 1197 2.44e-24 106
Msa1008410 MtrunA17_Chr8g0367221 24.615 455 290 15 5 429 1288 1719 3.80e-23 103
Msa1008410 MtrunA17_Chr7g0241801 27.273 385 227 13 5 376 9 353 5.43e-25 106
Msa1008410 MtrunA17_Chr4g0040691 24.481 482 270 17 5 437 8 444 1.10e-24 106
Msa1008410 MtrunA17_Chr2g0283041 25.227 440 277 17 3 417 5 417 1.14e-24 105
Msa1008410 MtrunA17_Chr8g0336251 25.217 460 281 15 5 428 7 439 1.28e-24 105
Msa1008410 MtrunA17_Chr1g0165701 28.846 260 149 8 220 449 228 481 1.76e-24 105
Msa1008410 MtrunA17_Chr4g0029151 26.824 466 276 17 5 437 20 453 1.81e-24 105
Msa1008410 MtrunA17_Chr8g0336321 25.217 460 281 15 5 428 7 439 2.67e-24 105
Msa1008410 MtrunA17_Chr4g0042891 25.843 356 209 11 131 448 124 462 4.25e-24 104
Msa1008410 MtrunA17_Chr4g0040711 32.609 184 114 4 264 437 261 444 4.94e-24 104
Msa1008410 MtrunA17_Chr8g0355221 24.760 416 260 13 73 449 83 484 7.76e-24 103
Msa1008410 MtrunA17_Chr4g0042931 31.441 229 132 8 239 449 240 461 9.22e-24 103
Msa1008410 MtrunA17_Chr7g0232351 39.189 148 71 5 237 368 234 378 1.03e-23 102
Msa1008410 MtrunA17_Chr1g0207881 36.508 126 75 2 328 448 256 381 1.55e-22 99.0
Msa1008410 MtrunA17_Chr8g0337381 36.585 123 76 2 330 450 3 125 2.07e-22 92.8
Msa1008410 MtrunA17_Chr5g0431431 26.366 421 210 18 5 411 10 344 3.29e-22 97.8
Msa1008410 MtrunA17_Chr6g0454231 27.523 218 108 6 235 441 29 207 1.20e-21 97.4
Msa1008410 MtrunA17_Chr6g0454231 27.108 166 110 3 4 165 249 407 4.61e-15 77.0
Msa1008410 MtrunA17_Chr4g0029161 25.708 459 262 16 5 437 12 417 4.85e-21 95.1
Msa1008410 MtrunA17_Chr2g0278721 23.894 452 301 13 5 429 517 952 1.01e-20 95.5
Msa1008410 MtrunA17_Chr2g0278721 22.958 453 295 16 5 429 15 441 4.56e-16 80.9
Msa1008410 MtrunA17_Chr6g0482061 22.560 461 313 14 3 430 9 458 1.22e-20 94.4
Msa1008410 MtrunA17_Chr8g0357361 35.211 142 87 3 262 399 118 258 2.76e-20 90.5
Msa1008410 MtrunA17_Chr5g0416821 22.407 482 309 16 7 449 16 471 5.03e-20 92.4
Msa1008410 MtrunA17_Chr5g0427571 29.487 234 135 7 219 428 46 273 1.50e-19 89.0
Msa1008410 MtrunA17_Chr2g0319751 24.508 457 292 14 5 435 485 914 3.23e-19 90.9
Msa1008410 MtrunA17_Chr2g0319751 28.342 187 100 7 262 437 257 420 1.06e-12 70.5
Msa1008410 MtrunA17_Chr2g0319791 34.043 188 112 6 262 437 257 444 6.64e-19 89.0
Msa1008410 MtrunA17_Chr4g0069611 22.844 429 298 11 5 418 15 425 3.36e-18 86.7
Msa1008410 MtrunA17_Chr2g0319731 25.435 460 288 17 5 437 25 456 5.27e-18 86.3
Msa1008410 MtrunA17_Chr5g0426411 31.579 171 105 5 4 170 11 173 1.10e-17 80.5
Msa1008410 MtrunA17_Chr4g0066141 35.766 137 74 3 327 449 213 349 1.21e-17 84.3
Msa1008410 MtrunA17_Chr3g0092031 32.500 160 100 5 264 418 6 162 1.47e-17 80.9
Msa1008410 MtrunA17_Chr6g0466831 22.912 467 301 15 5 446 18 450 5.24e-17 83.2
Msa1008410 MtrunA17_Chr6g0454281 30.000 170 105 3 4 166 9 171 5.33e-17 79.7
Msa1008410 MtrunA17_Chr2g0319801 24.838 463 287 14 5 437 8 439 9.32e-17 82.4
Msa1008410 MtrunA17_Chr7g0231631 25.670 261 150 8 219 449 11 257 9.98e-17 80.1
Msa1008410 MtrunA17_Chr7g0243731 45.205 73 39 1 327 398 6 78 1.05e-16 74.7
Msa1008410 MtrunA17_Chr6g0466841 22.523 444 281 15 5 418 18 428 5.03e-16 80.1
Msa1008410 MtrunA17_Chr2g0278741 23.673 452 293 16 5 429 97 523 5.03e-16 80.5
Msa1008410 MtrunA17_Chr6g0464091 36.232 138 81 4 264 397 279 413 1.72e-15 78.6
Msa1008410 MtrunA17_Chr6g0453981 43.011 93 45 2 225 309 113 205 3.34e-15 74.7
Msa1008410 MtrunA17_Chr2g0321331 32.222 180 94 7 269 437 91 253 3.77e-15 75.5
Msa1008410 MtrunA17_Chr2g0302851 23.182 440 283 15 5 418 16 426 9.57e-15 76.3
Msa1008410 MtrunA17_Chr4g0039881 22.664 428 280 13 15 418 2 402 1.23e-14 75.9
Msa1008410 MtrunA17_Chr8g0336271 26.220 164 111 3 5 165 10 166 6.35e-13 68.9
Msa1008410 MtrunA17_Chr8g0334841 41.935 93 50 2 235 327 64 152 1.36e-12 65.9
Msa1008410 MtrunA17_Chr6g0453941 51.724 58 28 0 252 309 201 258 1.15e-11 65.1
Msa1008410 MtrunA17_Chr6g0454391 36.986 73 38 1 343 415 11 75 2.92e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008410 AT3G02100.1 40.605 463 249 9 1 450 9 458 1.46e-122 365
Msa1008410 AT1G22340.1 31.524 479 284 16 4 449 12 479 6.89e-74 240
Msa1008410 AT1G22380.1 31.733 479 282 15 4 449 12 478 1.96e-72 236
Msa1008410 AT1G22400.1 31.447 477 283 13 4 450 12 474 4.04e-72 236
Msa1008410 AT1G22370.2 33.173 416 248 8 4 396 12 420 7.20e-71 232
Msa1008410 AT1G78270.1 31.579 475 284 14 4 450 12 473 2.52e-70 231
Msa1008410 AT1G22360.1 32.150 479 278 16 5 449 10 475 2.88e-70 231
Msa1008410 AT1G22360.2 33.649 422 241 13 5 396 10 422 5.23e-67 222
Msa1008410 AT3G46670.1 28.936 470 275 13 7 450 11 447 3.33e-62 209
Msa1008410 AT3G55700.1 30.737 475 265 16 5 449 8 448 7.75e-62 208
Msa1008410 AT3G22250.1 28.387 465 270 13 4 433 7 443 8.54e-62 208
Msa1008410 AT1G05675.1 29.336 467 286 11 5 449 6 450 1.63e-60 204
Msa1008410 AT3G46660.1 29.892 465 279 13 7 450 16 454 5.69e-60 203
Msa1008410 AT3G21560.1 29.730 481 282 15 4 449 11 470 1.05e-59 203
Msa1008410 AT5G59590.1 29.574 470 274 14 5 449 10 447 5.12e-59 200
Msa1008410 AT5G59580.1 29.424 469 275 14 5 449 9 445 5.98e-59 200
Msa1008410 AT1G05680.1 28.723 470 285 11 5 449 6 450 7.90e-58 197
Msa1008410 AT4G15550.1 28.189 486 289 17 4 452 12 474 9.84e-58 197
Msa1008410 AT3G11340.1 29.449 472 276 12 4 452 8 445 1.81e-57 196
Msa1008410 AT5G38010.1 28.782 476 274 12 5 449 10 451 9.55e-57 194
Msa1008410 AT2G31750.1 29.828 466 279 12 7 448 10 451 1.33e-56 194
Msa1008410 AT2G31750.2 29.828 466 279 12 7 448 10 451 3.38e-56 194
Msa1008410 AT3G55710.1 30.769 468 282 15 3 449 6 452 3.55e-56 193
Msa1008410 AT3G46700.1 28.664 464 280 14 5 448 9 441 2.01e-55 191
Msa1008410 AT3G46680.1 29.122 467 281 16 5 449 9 447 2.28e-55 191
Msa1008410 AT5G38040.1 28.884 457 274 12 15 449 20 447 5.38e-55 189
Msa1008410 AT2G36970.1 28.330 473 299 13 4 449 9 468 9.75e-55 190
Msa1008410 AT5G05880.1 28.118 473 276 14 7 450 10 447 1.11e-54 189
Msa1008410 AT5G05900.1 28.105 459 293 10 7 450 10 446 1.25e-54 189
Msa1008410 AT3G46650.1 28.294 463 278 14 5 452 10 433 5.82e-54 186
Msa1008410 AT2G23260.1 28.421 475 277 16 5 449 10 451 6.56e-54 187
Msa1008410 AT1G05560.1 26.050 476 296 12 1 448 1 448 3.35e-53 185
Msa1008410 AT3G46690.1 28.817 465 288 14 5 449 9 450 3.50e-53 185
Msa1008410 AT1G05560.2 25.840 476 297 12 1 448 51 498 6.41e-53 186
Msa1008410 AT3G46720.1 30.870 460 260 14 5 443 9 431 6.58e-53 184
Msa1008410 AT1G05530.1 26.915 483 286 14 1 448 1 451 1.21e-52 183
Msa1008410 AT2G23250.1 27.571 457 278 12 15 449 8 433 1.53e-52 183
Msa1008410 AT4G15500.1 28.571 483 280 16 3 449 7 460 7.07e-52 182
Msa1008410 AT5G05860.1 28.078 463 289 12 5 449 9 445 1.14e-51 181
Msa1008410 AT4G14090.1 27.505 469 290 14 4 449 12 453 1.39e-51 181
Msa1008410 AT4G15490.1 28.450 471 297 19 5 449 8 464 2.57e-51 181
Msa1008410 AT2G43840.2 28.025 471 280 14 5 449 7 444 3.36e-51 179
Msa1008410 AT2G43840.1 28.238 471 279 14 5 449 7 444 4.05e-51 179
Msa1008410 AT2G26480.1 27.542 472 281 16 7 452 10 446 4.31e-50 176
Msa1008410 AT5G05870.1 26.767 467 298 11 5 449 8 452 5.45e-50 177
Msa1008410 AT2G30140.2 27.991 468 282 13 5 449 13 448 1.28e-49 175
Msa1008410 AT5G05890.1 28.875 471 283 15 5 450 8 451 3.34e-49 174
Msa1008410 AT2G30140.1 27.872 470 281 14 5 449 13 449 4.20e-49 174
Msa1008410 AT4G15480.1 26.638 473 304 13 5 449 19 476 6.66e-49 174
Msa1008410 AT2G28080.1 27.312 465 297 16 9 449 22 469 3.10e-48 172
Msa1008410 AT2G43820.1 27.389 471 283 14 5 449 7 444 7.36e-48 171
Msa1008410 AT2G31790.1 27.564 468 293 11 5 448 8 453 2.52e-46 167
Msa1008410 AT1G22370.1 37.037 243 132 5 175 396 8 250 3.99e-46 162
Msa1008410 AT2G30150.2 27.623 467 293 16 1 448 9 449 1.59e-45 164
Msa1008410 AT1G01420.1 28.423 482 275 17 4 444 7 459 1.62e-45 165
Msa1008410 AT1G01420.2 28.423 482 275 17 4 444 10 462 2.05e-45 165
Msa1008410 AT2G15480.1 29.317 498 268 19 5 448 10 477 4.64e-45 164
Msa1008410 AT2G15490.1 29.046 482 282 18 5 443 7 471 7.04e-45 163
Msa1008410 AT3G16520.3 29.296 355 219 11 117 449 113 457 3.39e-44 161
Msa1008410 AT2G15480.2 29.960 504 256 20 5 443 10 481 1.37e-43 160
Msa1008410 AT2G15490.3 28.661 478 286 17 5 443 7 468 2.49e-43 159
Msa1008410 AT2G30150.1 28.105 459 285 17 9 448 1 433 3.39e-43 158
Msa1008410 AT1G24100.1 25.417 480 287 14 5 448 11 455 7.34e-43 157
Msa1008410 AT3G16520.2 30.183 328 207 10 117 427 113 435 7.67e-43 157
Msa1008410 AT3G16520.1 30.183 328 207 10 117 427 113 435 9.02e-43 157
Msa1008410 AT2G29740.1 27.389 471 310 14 5 449 8 472 5.74e-41 152
Msa1008410 AT2G36800.1 26.899 487 298 16 5 448 12 483 1.93e-40 151
Msa1008410 AT4G01070.1 27.215 474 292 16 4 444 7 460 3.37e-40 150
Msa1008410 AT2G36760.1 26.069 491 286 16 5 443 14 479 4.61e-40 150
Msa1008410 AT3G21790.1 24.897 486 311 12 5 449 4 476 1.03e-39 149
Msa1008410 AT3G21750.1 23.333 480 316 12 5 449 4 466 2.38e-39 148
Msa1008410 AT3G53160.1 27.419 496 269 20 5 441 8 471 3.48e-39 148
Msa1008410 AT2G36770.1 27.027 481 294 16 5 443 14 479 4.77e-39 147
Msa1008410 AT3G21760.1 25.720 486 309 13 5 449 4 478 1.50e-38 146
Msa1008410 AT2G36780.1 24.897 486 298 15 5 443 14 479 1.68e-38 146
Msa1008410 AT4G36770.1 30.128 468 251 23 5 429 4 438 2.64e-38 145
Msa1008410 AT1G01390.2 27.273 473 293 14 4 444 24 477 3.33e-38 145
Msa1008410 AT4G34131.1 26.305 498 282 15 5 448 10 476 3.51e-38 145
Msa1008410 AT1G01390.1 27.273 473 293 14 4 444 7 460 3.90e-38 145
Msa1008410 AT1G07250.1 25.527 474 313 12 5 448 6 469 1.18e-37 143
Msa1008410 AT3G21780.1 24.528 477 314 10 5 449 4 466 2.79e-37 142
Msa1008410 AT4G15280.1 23.333 480 321 14 5 449 4 471 4.30e-37 142
Msa1008410 AT4G15280.2 23.333 480 321 14 5 449 36 503 6.04e-37 142
Msa1008410 AT4G34138.1 26.132 486 294 17 1 440 1 467 1.15e-36 140
Msa1008410 AT4G15260.1 26.149 348 227 8 130 449 7 352 1.16e-36 138
Msa1008410 AT4G34135.1 25.862 464 257 15 5 416 11 439 4.21e-36 139
Msa1008410 AT2G36790.1 26.708 483 303 15 5 448 13 483 5.12e-36 139
Msa1008410 AT3G21800.1 22.917 480 322 11 6 449 6 473 6.91e-36 138
Msa1008410 AT2G29750.1 25.738 474 313 13 5 449 8 471 3.93e-35 136
Msa1008410 AT2G36750.1 26.122 490 296 14 5 448 10 479 4.47e-35 136
Msa1008410 AT3G50740.1 25.813 461 288 13 4 429 6 447 2.30e-34 134
Msa1008410 AT5G17050.1 24.459 462 313 14 5 449 12 454 3.29e-34 133
Msa1008410 AT2G29730.1 24.842 475 306 17 5 448 5 459 4.41e-34 133
Msa1008410 AT5G12890.1 26.176 489 284 18 15 452 20 482 7.80e-34 133
Msa1008410 AT3G53150.1 24.752 505 301 14 5 449 22 507 8.55e-34 133
Msa1008410 AT1G07240.1 23.868 486 318 16 1 448 1 472 2.54e-33 131
Msa1008410 AT1G07260.1 23.922 464 320 13 12 449 13 469 7.07e-33 130
Msa1008410 AT5G37950.2 26.330 376 211 9 20 368 1 337 9.95e-33 127
Msa1008410 AT5G37950.1 26.273 373 221 9 20 368 1 343 1.27e-32 127
Msa1008410 AT5G26310.1 25.800 469 271 18 4 429 6 440 8.83e-32 127
Msa1008410 AT5G17040.1 24.738 477 297 18 1 452 1 440 9.01e-32 126
Msa1008410 AT2G18570.1 24.138 464 288 15 1 427 1 437 1.40e-31 126
Msa1008410 AT2G16890.2 25.620 484 284 18 5 444 9 460 4.22e-31 125
Msa1008410 AT5G66690.1 31.818 242 128 7 219 429 205 440 4.58e-31 125
Msa1008410 AT5G17030.1 24.894 470 300 19 5 449 12 453 5.21e-31 124
Msa1008410 AT5G17040.2 31.250 224 140 6 236 452 122 338 1.45e-30 121
Msa1008410 AT1G30530.1 23.451 452 309 12 12 449 20 448 3.59e-30 122
Msa1008410 AT2G18560.1 32.683 205 115 6 239 427 150 347 4.37e-30 120
Msa1008410 AT2G29710.1 23.142 471 319 15 6 449 6 460 1.43e-29 120
Msa1008410 AT2G22930.1 25.676 444 279 17 5 428 6 418 3.84e-29 119
Msa1008410 AT1G73880.1 25.000 488 284 16 5 448 14 463 5.55e-29 119
Msa1008410 AT2G16890.3 25.446 448 262 16 5 412 9 424 6.71e-29 118
Msa1008410 AT1G10400.1 25.786 477 299 18 5 449 7 460 1.86e-28 117
Msa1008410 AT5G49690.1 25.361 485 280 19 5 449 10 452 6.19e-28 115
Msa1008410 AT5G14860.1 23.878 490 280 17 5 443 8 455 1.05e-27 115
Msa1008410 AT1G51210.1 25.962 416 255 15 4 399 19 401 2.19e-27 114
Msa1008410 AT5G65550.1 22.391 460 273 17 5 420 9 428 3.98e-27 113
Msa1008410 AT1G64910.1 24.947 473 291 20 5 449 6 442 4.62e-27 113
Msa1008410 AT4G27560.1 25.000 416 259 14 5 399 7 390 5.06e-27 113
Msa1008410 AT5G03490.1 30.189 212 142 3 240 448 251 459 1.21e-26 112
Msa1008410 AT5G53990.1 23.125 480 291 18 5 449 6 442 1.46e-26 111
Msa1008410 AT1G64920.1 23.629 474 300 16 5 449 6 446 3.46e-25 107
Msa1008410 AT4G27570.1 23.866 419 260 13 5 399 7 390 4.26e-25 107
Msa1008410 AT5G54010.1 23.555 467 304 15 5 449 6 441 6.65e-25 107
Msa1008410 AT3G29630.1 24.242 462 284 15 15 449 16 438 5.49e-22 98.6
Msa1008410 AT4G09500.2 23.318 446 289 18 5 429 6 419 6.76e-22 98.2
Msa1008410 AT1G50580.1 25.658 456 273 18 15 442 16 433 4.32e-21 95.9
Msa1008410 AT3G29630.2 24.533 428 261 13 15 428 16 395 4.35e-21 95.5
Msa1008410 AT1G06000.1 29.682 283 168 13 191 448 154 430 7.64e-21 95.1
Msa1008410 AT4G09500.1 31.176 170 107 5 270 429 225 394 2.66e-19 90.1
Msa1008410 AT2G22590.1 22.727 462 289 18 5 429 15 445 1.45e-17 85.1
Msa1008410 AT5G54060.1 23.077 468 301 15 15 449 23 464 4.76e-17 83.6
Msa1008410 AT4G01070.2 25.982 331 212 13 4 321 7 317 1.33e-14 75.5

Find 96 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTCCATCTTTGGCATATT+TGG 0.163778 7_1:+8692259 None:intergenic
GGGCCAATTGGTAGAAATTT+TGG 0.185322 7_1:+8692100 None:intergenic
GATACCCATTTGATTGAAAA+TGG 0.194794 7_1:+8694825 None:intergenic
TATTATTGTTACCTTCAATA+TGG 0.223301 7_1:-8694455 Msa1008410:CDS
GAATTAGACAAGGATGAAAA+TGG 0.225819 7_1:-8691629 Msa1008410:CDS
CTAAGGCTAATTCTTTAAAT+TGG 0.229806 7_1:+8691942 None:intergenic
ACTCCATCATCAATTAGTTT+AGG 0.236606 7_1:+8694340 None:intergenic
CTCCATCATCAATTAGTTTA+GGG 0.245474 7_1:+8694341 None:intergenic
AACAATAATATTTCTATTGT+TGG 0.251594 7_1:-8694670 Msa1008410:CDS
GACTGGCTCAGCAACTTCTT+TGG 0.255726 7_1:-8694380 Msa1008410:CDS
CTAATTCTTTAAATTGGTTT+TGG 0.262998 7_1:+8691948 None:intergenic
TGATCACTTCTATCATCTTC+AGG 0.269767 7_1:+8694577 None:intergenic
GAGCTGAATTTCTTGATCTT+TGG 0.276157 7_1:+8692285 None:intergenic
GGACAAAGCTTAGGAATTAA+AGG 0.285150 7_1:-8694415 Msa1008410:CDS
CTTCAATATGGGATGGGCTT+TGG 0.339287 7_1:-8694443 Msa1008410:CDS
CTGGTATACCTTTCTTGTGT+TGG 0.360564 7_1:-8691715 Msa1008410:CDS
CATAGAAGATGTTAATGATA+TGG 0.364764 7_1:-8694500 Msa1008410:CDS
TGTCACACTCCCAGATGGTT+TGG 0.377384 7_1:-8694602 Msa1008410:CDS
AGTATAGAAGGTGTATATTC+TGG 0.389103 7_1:-8691734 Msa1008410:CDS
CTGGATAACATAGTAGAAAA+TGG 0.390764 7_1:-8691512 Msa1008410:CDS
ATTATTGTTACCTTCAATAT+GGG 0.398070 7_1:-8694454 Msa1008410:CDS
ATATGTTTCCTTCGGTAGTT+TGG 0.403181 7_1:-8691981 Msa1008410:CDS
CTTCGGTAGTTTGGCAGTAA+TGG 0.405126 7_1:-8691972 Msa1008410:CDS
GAGATGCAAACTATGAAGTT+AGG 0.405801 7_1:-8692181 Msa1008410:CDS
AAGACATGACTTCATTAGAT+TGG 0.406433 7_1:-8692033 Msa1008410:CDS
AGTGATCTTGCTGCCATGTT+TGG 0.411201 7_1:+8694729 None:intergenic
TCACCAAAATTTCTACCAAT+TGG 0.411613 7_1:-8692103 Msa1008410:CDS
ATAATGCTTTAGTACTTGTT+TGG 0.414535 7_1:-8691444 Msa1008410:three_prime_UTR
TCTTCAGGTTCCAAACCATC+TGG 0.420787 7_1:+8694592 None:intergenic
GCATACCCTGACGATTTCCT+TGG 0.420864 7_1:-8691851 Msa1008410:CDS
ACCAATTGGCCCATTGATGA+TGG 0.421677 7_1:-8692089 Msa1008410:CDS
ATGGGATGGGCTTTGGAAGT+TGG 0.427573 7_1:-8694436 Msa1008410:CDS
TTAACATCTTCTATGAGCTT+AGG 0.431939 7_1:+8694508 None:intergenic
ACAGCAACAAAAGTTCATTC+TGG 0.432292 7_1:-8692060 Msa1008410:CDS
AATTAGACAAGGATGAAAAT+GGG 0.435454 7_1:-8691628 Msa1008410:CDS
TGAAAATGGGTTAGTACTAA+AGG 0.436064 7_1:-8691615 Msa1008410:CDS
TTGGAAGTTGGACAAAGCTT+AGG 0.440936 7_1:-8694424 Msa1008410:CDS
TCCATCATCAATGGGCCAAT+TGG 0.441886 7_1:+8692088 None:intergenic
CAATTTAAAGAATTAGCCTT+AGG 0.449998 7_1:-8691941 Msa1008410:CDS
ATTTGTGATGTGTGGAAGGT+TGG 0.452190 7_1:-8691656 Msa1008410:CDS
TTAGTTCCAAGGAAATCGTC+AGG 0.454014 7_1:+8691845 None:intergenic
GACGATTTCCTTGGAACTAA+AGG 0.458681 7_1:-8691842 Msa1008410:CDS
GGATTTATATGACCTGGGAC+TGG 0.463261 7_1:+8694778 None:intergenic
GATTTATATGACCTGGGACT+GGG 0.463275 7_1:+8694779 None:intergenic
GGTTGGAATTCTAGTATAGA+AGG 0.467850 7_1:-8691746 Msa1008410:CDS
ATAAATTGATCAGTTGCAAA+TGG 0.468563 7_1:+8691692 None:intergenic
CGATCTTGCCTTTAGTTCCA+AGG 0.473415 7_1:+8691834 None:intergenic
CTCTCCAAATATGCCAAAGA+TGG 0.475849 7_1:-8692263 Msa1008410:CDS
TCCAAAGAAAAGGCTTGTTA+AGG 0.478158 7_1:+8691909 None:intergenic
GAAAATGGGTTAGTACTAAA+GGG 0.479637 7_1:-8691614 Msa1008410:CDS
GGACGAACAATCCAAAGAAA+AGG 0.490004 7_1:+8691899 None:intergenic
GTTATTCCATGCCCAGTCCC+AGG 0.495233 7_1:-8694790 Msa1008410:CDS
AGAAAGATCATTGAAACTAA+AGG 0.497391 7_1:-8691543 Msa1008410:CDS
TAAAGGCAAGATCGTTAGTT+GGG 0.498087 7_1:-8691825 Msa1008410:CDS
TGTGGCTGAATTCTGTGTTA+AGG 0.499811 7_1:+8694704 None:intergenic
TGTTACCTTCAATATGGGAT+GGG 0.503672 7_1:-8694449 Msa1008410:CDS
ATTAAATACGATCTTGTCAA+AGG 0.508870 7_1:+8692216 None:intergenic
TTGTTACCTTCAATATGGGA+TGG 0.510585 7_1:-8694450 Msa1008410:CDS
ATGAGGGGATTTATATGACC+TGG 0.515016 7_1:+8694772 None:intergenic
ATATGACCTGGGACTGGGCA+TGG 0.517428 7_1:+8694784 None:intergenic
TCTGTCGTATATGTTTCCTT+CGG 0.526654 7_1:-8691989 Msa1008410:CDS
AAAGGGAGAGATAAAGAAGA+AGG 0.528900 7_1:-8691597 Msa1008410:CDS
ATCCCTAAACTAATTGATGA+TGG 0.529148 7_1:-8694343 Msa1008410:CDS
CTAAAGGCAAGATCGTTAGT+TGG 0.531932 7_1:-8691826 Msa1008410:CDS
GTTTCATTAGTCACTGTGGT+TGG 0.532164 7_1:-8691763 Msa1008410:CDS
CAAAGCCCATCCCATATTGA+AGG 0.533037 7_1:+8694444 None:intergenic
TTTACCTTGTTGTCATTACT+CGG 0.537253 7_1:+8691878 None:intergenic
GCAAATGGCCAACACAAGAA+AGG 0.540571 7_1:+8691707 None:intergenic
GGGAGAGATAAAGAAGAAGG+TGG 0.542275 7_1:-8691594 Msa1008410:CDS
CTAATGAAACAAGCTATAGC+AGG 0.547651 7_1:+8691776 None:intergenic
GAAACATATACGACAGATTG+AGG 0.549069 7_1:+8691995 None:intergenic
CTATGAAGTTAGGACATTGG+TGG 0.565705 7_1:-8692171 Msa1008410:CDS
CTTCAGGTTCCAAACCATCT+GGG 0.574566 7_1:+8694593 None:intergenic
AACATGACATAATTGCATGA+GGG 0.580442 7_1:+8694756 None:intergenic
AACTTTGTCACACTCCCAGA+TGG 0.588603 7_1:-8694607 Msa1008410:CDS
TCTATGAGCTTAGGAAGCAA+AGG 0.590890 7_1:+8694517 None:intergenic
AAACATGACATAATTGCATG+AGG 0.596705 7_1:+8694755 None:intergenic
ATCTTGTCAAAGGTTCGCCA+TGG 0.597686 7_1:+8692226 None:intergenic
GTTAAGGAGATCAAGTCCTA+AGG 0.597997 7_1:+8691925 None:intergenic
AAACTATGAAGTTAGGACAT+TGG 0.599087 7_1:-8692174 Msa1008410:CDS
ACATGACATAATTGCATGAG+GGG 0.606077 7_1:+8694757 None:intergenic
GATGGAGTAATTGATTCAGC+AGG 0.610610 7_1:-8694325 Msa1008410:intron
ATATATTTGTGATGTGTGGA+AGG 0.614853 7_1:-8691660 Msa1008410:CDS
GCTTGTTTCATTAGTCACTG+TGG 0.617439 7_1:-8691767 Msa1008410:CDS
AGTCATATATTTGTGATGTG+TGG 0.621801 7_1:-8691664 Msa1008410:CDS
GAAACTAAAGGAGTTAACAC+TGG 0.629244 7_1:-8691531 Msa1008410:CDS
TGAGGGGATTTATATGACCT+GGG 0.629842 7_1:+8694773 None:intergenic
GGTTGGATTTGAATTAGACA+AGG 0.633037 7_1:-8691639 Msa1008410:CDS
CATGGAATAACAAGAAAGTG+AGG 0.646460 7_1:+8694802 None:intergenic
TAGTTCCAAGGAAATCGTCA+GGG 0.647249 7_1:+8691846 None:intergenic
TGAAACAAGCTATAGCAGGA+TGG 0.655376 7_1:+8691780 None:intergenic
ATGAGCTTAGGAAGCAAAGG+AGG 0.658953 7_1:+8694520 None:intergenic
CATTACTGCCAAACTACCGA+AGG 0.660154 7_1:+8691973 None:intergenic
ATGGAATAACAAGAAAGTGA+GGG 0.666417 7_1:+8694803 None:intergenic
TCGTCCGAGTAATGACAACA+AGG 0.724446 7_1:-8691882 Msa1008410:CDS
ACATATACGACAGATTGAGG+CGG 0.741046 7_1:+8691998 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGTTTTTAAAAAAACT+CGG - chr7_1:8692057-8692076 Msa1008410:CDS 10.0%
!! AAAATCTTATAAAAAAAAGT+TGG + chr7_1:8692384-8692403 None:intergenic 10.0%
!!! TATAAGATTTTTCTTTTTTA+AGG - chr7_1:8692393-8692412 Msa1008410:intron 10.0%
!!! TTTTAATATTGTCATTTTTT+TGG + chr7_1:8692464-8692483 None:intergenic 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr7_1:8693389-8693408 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr7_1:8693390-8693409 None:intergenic 10.0%
!!! AACAATAATATTTCTATTGT+TGG - chr7_1:8691501-8691520 Msa1008410:CDS 15.0%
!!! TGTTAATTGTTTTGTTATTT+TGG - chr7_1:8691887-8691906 Msa1008410:CDS 15.0%
!! ATTAATATTGAAACTCATTT+GGG + chr7_1:8692266-8692285 None:intergenic 15.0%
!! TATTAATATTGAAACTCATT+TGG + chr7_1:8692267-8692286 None:intergenic 15.0%
!! TCATAATAAATCAAGAAATA+AGG + chr7_1:8692672-8692691 None:intergenic 15.0%
!!! AACTAATTAATTAAGGATTT+TGG - chr7_1:8692756-8692775 Msa1008410:intron 15.0%
!!! ACTAATTAATTAAGGATTTT+GGG - chr7_1:8692757-8692776 Msa1008410:intron 15.0%
!! GTAAATATGATTAACTAATT+CGG - chr7_1:8692841-8692860 Msa1008410:intron 15.0%
!!! AAAAAATGATTTTATTACAG+AGG - chr7_1:8692868-8692887 Msa1008410:intron 15.0%
!!! AAAAATGATTTTATTACAGA+GGG - chr7_1:8692869-8692888 Msa1008410:intron 15.0%
!!! GTTAGAAACATTTTTTTTTT+TGG - chr7_1:8692906-8692925 Msa1008410:intron 15.0%
!! CAAAAAAAAAAAAAATTCAG+TGG + chr7_1:8693005-8693024 None:intergenic 15.0%
!!! CACTGAATTTTTTTTTTTTT+TGG - chr7_1:8693003-8693022 Msa1008410:intron 15.0%
!!! AATCTTGTTAATTCTTTTAA+AGG + chr7_1:8693039-8693058 None:intergenic 15.0%
!! AATTAGAGTTATATTGTATT+AGG + chr7_1:8693324-8693343 None:intergenic 15.0%
!! AAAGTGAAATATATTGAATT+GGG + chr7_1:8693365-8693384 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr7_1:8693388-8693407 None:intergenic 15.0%
!!! TGATTTAATTTATCCATTAT+AGG - chr7_1:8693855-8693874 Msa1008410:intron 15.0%
!!! TATTGTTGTTGATTTTTTTG+TGG + chr7_1:8691488-8691507 None:intergenic 20.0%
!! TATTATTGTTACCTTCAATA+TGG - chr7_1:8691716-8691735 Msa1008410:CDS 20.0%
!! ATTATTGTTACCTTCAATAT+GGG - chr7_1:8691717-8691736 Msa1008410:CDS 20.0%
!!! ATTTTTGAAAATAGTCAAAG+TGG + chr7_1:8691944-8691963 None:intergenic 20.0%
!! TTAATATTGAAACTCATTTG+GGG + chr7_1:8692265-8692284 None:intergenic 20.0%
!! GATAATGCATAATATATGTA+AGG - chr7_1:8692957-8692976 Msa1008410:intron 20.0%
!! AAAAAAAAAAAATTCAGTGG+TGG + chr7_1:8693002-8693021 None:intergenic 20.0%
!!! TAATTAACCTTCTTAGATTT+TGG - chr7_1:8693127-8693146 Msa1008410:intron 20.0%
!!! TGAAATGACTCAATTATTTT+GGG + chr7_1:8693277-8693296 None:intergenic 20.0%
!!! TTGAAATGACTCAATTATTT+TGG + chr7_1:8693278-8693297 None:intergenic 20.0%
!! GAAAGTGAAATATATTGAAT+TGG + chr7_1:8693366-8693385 None:intergenic 20.0%
!! TTTGGTATAAATTCCTATAA+TGG + chr7_1:8693871-8693890 None:intergenic 20.0%
!!! CTAATTCTTTAAATTGGTTT+TGG + chr7_1:8694226-8694245 None:intergenic 20.0%
!! ATCTCAAAAACTTTATCAAT+TGG - chr7_1:8694696-8694715 Msa1008410:CDS 20.0%
!! TCTCAAAAACTTTATCAATT+GGG - chr7_1:8694697-8694716 Msa1008410:CDS 20.0%
!!! TTTTGTTTGGTTTTTTTTTC+TGG - chr7_1:8694767-8694786 Msa1008410:CDS 20.0%
!!! TTTGTTTGGTTTTTTTTTCT+GGG - chr7_1:8694768-8694787 Msa1008410:CDS 20.0%
! CATAGAAGATGTTAATGATA+TGG - chr7_1:8691671-8691690 Msa1008410:CDS 25.0%
!!! GAATTAAAGGTGTTTTTCTT+TGG - chr7_1:8691769-8691788 Msa1008410:CDS 25.0%
! TGCTATGTTGTTATACATAT+GGG - chr7_1:8691974-8691993 Msa1008410:CDS 25.0%
! TTATACATATGGGTAAAGTT+TGG - chr7_1:8691984-8692003 Msa1008410:CDS 25.0%
!!! TTTTTAAAAAAACTCGGTTC+CGG - chr7_1:8692063-8692082 Msa1008410:CDS 25.0%
!!! TAAAAAAAAGTTGGCTTTGA+TGG + chr7_1:8692375-8692394 None:intergenic 25.0%
! ATATTAAAATAACCAACCAC+TGG - chr7_1:8692475-8692494 Msa1008410:intron 25.0%
! TATTAAAATAACCAACCACT+GGG - chr7_1:8692476-8692495 Msa1008410:intron 25.0%
!!! TTAATTAAGGATTTTGGGTT+AGG - chr7_1:8692762-8692781 Msa1008410:intron 25.0%
! ATTTCAACCAAAATCTAAGA+AGG + chr7_1:8693137-8693156 None:intergenic 25.0%
!!! TCTTAGATTTTGGTTGAAAT+TGG - chr7_1:8693137-8693156 Msa1008410:intron 25.0%
! ACATGAAAATTGTTCTTTGT+TGG - chr7_1:8693689-8693708 Msa1008410:intron 25.0%
! ATTAAATACGATCTTGTCAA+AGG + chr7_1:8693958-8693977 None:intergenic 25.0%
! CTAAGGCTAATTCTTTAAAT+TGG + chr7_1:8694232-8694251 None:intergenic 25.0%
!!! CAATTTAAAGAATTAGCCTT+AGG - chr7_1:8694230-8694249 Msa1008410:intron 25.0%
! ATAAATTGATCAGTTGCAAA+TGG + chr7_1:8694482-8694501 None:intergenic 25.0%
! AATTAGACAAGGATGAAAAT+GGG - chr7_1:8694543-8694562 Msa1008410:CDS 25.0%
! AGAAAGATCATTGAAACTAA+AGG - chr7_1:8694628-8694647 Msa1008410:CDS 25.0%
! ATAATGCTTTAGTACTTGTT+TGG - chr7_1:8694727-8694746 Msa1008410:CDS 25.0%
!!! TGTTGTAAGATTGTTTTGTT+TGG - chr7_1:8694754-8694773 Msa1008410:CDS 25.0%
GATACCCATTTGATTGAAAA+TGG + chr7_1:8691349-8691368 None:intergenic 30.0%
ATGGAATAACAAGAAAGTGA+GGG + chr7_1:8691371-8691390 None:intergenic 30.0%
AACATGACATAATTGCATGA+GGG + chr7_1:8691418-8691437 None:intergenic 30.0%
AAACATGACATAATTGCATG+AGG + chr7_1:8691419-8691438 None:intergenic 30.0%
!!! TGTCATGTTTTAACCAAACA+TGG - chr7_1:8691429-8691448 Msa1008410:three_prime_UTR 30.0%
!! CTTGACTTTGTTCATTTTTG+AGG + chr7_1:8691536-8691555 None:intergenic 30.0%
TTAACATCTTCTATGAGCTT+AGG + chr7_1:8691666-8691685 None:intergenic 30.0%
ATCCCTAAACTAATTGATGA+TGG - chr7_1:8691828-8691847 Msa1008410:CDS 30.0%
! CTCCATCATCAATTAGTTTA+GGG + chr7_1:8691833-8691852 None:intergenic 30.0%
! ACTCCATCATCAATTAGTTT+AGG + chr7_1:8691834-8691853 None:intergenic 30.0%
ACTTATTGTTCATGCATTGT+TGG - chr7_1:8691914-8691933 Msa1008410:CDS 30.0%
CTGCTATGTTGTTATACATA+TGG - chr7_1:8691973-8691992 Msa1008410:CDS 30.0%
GATCAAAAACCTTAGATAGT+CGG + chr7_1:8692097-8692116 None:intergenic 30.0%
!!! CCTACGTTTTTTTTTACCAA+TGG + chr7_1:8692581-8692600 None:intergenic 30.0%
CCATTGGTAAAAAAAAACGT+AGG - chr7_1:8692578-8692597 Msa1008410:intron 30.0%
GAAATAAGGTATACTTCTTG+AGG + chr7_1:8692658-8692677 None:intergenic 30.0%
TGCATAATATATGTAAGGTC+TGG - chr7_1:8692962-8692981 Msa1008410:intron 30.0%
GCATAATATATGTAAGGTCT+GGG - chr7_1:8692963-8692982 Msa1008410:intron 30.0%
CATAATATATGTAAGGTCTG+GGG - chr7_1:8692964-8692983 Msa1008410:intron 30.0%
!!! CTTTTTGACATTTTGACTCA+AGG - chr7_1:8693095-8693114 Msa1008410:intron 30.0%
! TGGAAGTACAAATGTACAAT+AGG - chr7_1:8693157-8693176 Msa1008410:intron 30.0%
! GGAAGTACAAATGTACAATA+GGG - chr7_1:8693158-8693177 Msa1008410:intron 30.0%
GTAAATGGATCAGATATTCT+GGG + chr7_1:8693242-8693261 None:intergenic 30.0%
AGTAAATGGATCAGATATTC+TGG + chr7_1:8693243-8693262 None:intergenic 30.0%
!!! GGGACACTTTTTTTAGTAAA+TGG + chr7_1:8693257-8693276 None:intergenic 30.0%
! AGTATTTTACACTTGCAGTA+TGG + chr7_1:8693623-8693642 None:intergenic 30.0%
GTTAGTAGTTAATTCGTTGT+GGG + chr7_1:8693754-8693773 None:intergenic 30.0%
TGTTAGTAGTTAATTCGTTG+TGG + chr7_1:8693755-8693774 None:intergenic 30.0%
AAACTATGAAGTTAGGACAT+TGG - chr7_1:8693997-8694016 Msa1008410:intron 30.0%
TCACCAAAATTTCTACCAAT+TGG - chr7_1:8694068-8694087 Msa1008410:intron 30.0%
!!! TGTCATTTTCCATCATCAAT+GGG + chr7_1:8694094-8694113 None:intergenic 30.0%
AAGACATGACTTCATTAGAT+TGG - chr7_1:8694138-8694157 Msa1008410:intron 30.0%
! TTTACCTTGTTGTCATTACT+CGG + chr7_1:8694296-8694315 None:intergenic 30.0%
! TGGTTCAATATCTTTTTCTG+CGG + chr7_1:8694374-8694393 None:intergenic 30.0%
! AGTATAGAAGGTGTATATTC+TGG - chr7_1:8694437-8694456 Msa1008410:CDS 30.0%
AGTCATATATTTGTGATGTG+TGG - chr7_1:8694507-8694526 Msa1008410:CDS 30.0%
ATATATTTGTGATGTGTGGA+AGG - chr7_1:8694511-8694530 Msa1008410:CDS 30.0%
GAATTAGACAAGGATGAAAA+TGG - chr7_1:8694542-8694561 Msa1008410:CDS 30.0%
!! TGAAAATGGGTTAGTACTAA+AGG - chr7_1:8694556-8694575 Msa1008410:CDS 30.0%
!! GAAAATGGGTTAGTACTAAA+GGG - chr7_1:8694557-8694576 Msa1008410:CDS 30.0%
CTGGATAACATAGTAGAAAA+TGG - chr7_1:8694659-8694678 Msa1008410:CDS 30.0%
CATGGAATAACAAGAAAGTG+AGG + chr7_1:8691372-8691391 None:intergenic 35.0%
ACATGACATAATTGCATGAG+GGG + chr7_1:8691417-8691436 None:intergenic 35.0%
TGATCACTTCTATCATCTTC+AGG + chr7_1:8691597-8691616 None:intergenic 35.0%
TTGTTACCTTCAATATGGGA+TGG - chr7_1:8691721-8691740 Msa1008410:CDS 35.0%
TGTTACCTTCAATATGGGAT+GGG - chr7_1:8691722-8691741 Msa1008410:CDS 35.0%
GGACAAAGCTTAGGAATTAA+AGG - chr7_1:8691756-8691775 Msa1008410:CDS 35.0%
!!! AAAGGTGTTTTTCTTTGGAC+TGG - chr7_1:8691774-8691793 Msa1008410:CDS 35.0%
TTGATCCCACAATCAATTTG+TGG - chr7_1:8692111-8692130 Msa1008410:CDS 35.0%
TGATCCCACAATCAATTTGT+GGG - chr7_1:8692112-8692131 Msa1008410:CDS 35.0%
!! TTTAGTGGGCTAAGTCAATA+TGG + chr7_1:8692165-8692184 None:intergenic 35.0%
!!! CCTATGGTGTCTATTTTAGT+GGG + chr7_1:8692179-8692198 None:intergenic 35.0%
!! TCCTATGGTGTCTATTTTAG+TGG + chr7_1:8692180-8692199 None:intergenic 35.0%
CAATGGAGATAATCTTGATG+AGG + chr7_1:8692564-8692583 None:intergenic 35.0%
CTCATCAAGATTATCTCCAT+TGG - chr7_1:8692562-8692581 Msa1008410:intron 35.0%
ACTTCTTGAGGAAAAACTTG+AGG + chr7_1:8692646-8692665 None:intergenic 35.0%
AAAAAATTCAGTGGTGGTCA+GGG + chr7_1:8692996-8693015 None:intergenic 35.0%
AAAAAAATTCAGTGGTGGTC+AGG + chr7_1:8692997-8693016 None:intergenic 35.0%
ATCTGTGTGAAAAACCAAAC+TGG - chr7_1:8693410-8693429 Msa1008410:intron 35.0%
! ATTTTACACTTGCAGTATGG+TGG + chr7_1:8693620-8693639 None:intergenic 35.0%
TTGTTCTTTGTTGGAGATCT+AGG - chr7_1:8693698-8693717 Msa1008410:intron 35.0%
GAGAGAAAAATATTCGTAGC+AGG + chr7_1:8693732-8693751 None:intergenic 35.0%
GAGCTGAATTTCTTGATCTT+TGG + chr7_1:8693889-8693908 None:intergenic 35.0%
!!! ACGTTTTTAGTGTCCATCTT+TGG + chr7_1:8693924-8693943 None:intergenic 35.0%
GAGATGCAAACTATGAAGTT+AGG - chr7_1:8693990-8694009 Msa1008410:intron 35.0%
!! TGGTAGAAATTTTGGTGAGA+TGG + chr7_1:8694066-8694085 None:intergenic 35.0%
!!! CTGTCATTTTCCATCATCAA+TGG + chr7_1:8694095-8694114 None:intergenic 35.0%
ACAGCAACAAAAGTTCATTC+TGG - chr7_1:8694111-8694130 Msa1008410:intron 35.0%
GAAACATATACGACAGATTG+AGG + chr7_1:8694179-8694198 None:intergenic 35.0%
TCTGTCGTATATGTTTCCTT+CGG - chr7_1:8694182-8694201 Msa1008410:intron 35.0%
ATATGTTTCCTTCGGTAGTT+TGG - chr7_1:8694190-8694209 Msa1008410:intron 35.0%
! TCCTTAACAAGCCTTTTCTT+TGG - chr7_1:8694261-8694280 Msa1008410:intron 35.0%
!! TCCAAAGAAAAGGCTTGTTA+AGG + chr7_1:8694265-8694284 None:intergenic 35.0%
TAAAGGCAAGATCGTTAGTT+GGG - chr7_1:8694346-8694365 Msa1008410:CDS 35.0%
CTAATGAAACAAGCTATAGC+AGG + chr7_1:8694398-8694417 None:intergenic 35.0%
GGTTGGAATTCTAGTATAGA+AGG - chr7_1:8694425-8694444 Msa1008410:CDS 35.0%
GGTTGGATTTGAATTAGACA+AGG - chr7_1:8694532-8694551 Msa1008410:CDS 35.0%
AAAGGGAGAGATAAAGAAGA+AGG - chr7_1:8694574-8694593 Msa1008410:CDS 35.0%
GAAACTAAAGGAGTTAACAC+TGG - chr7_1:8694640-8694659 Msa1008410:CDS 35.0%
!!! TTTTTCTGGGATACACTATG+AGG - chr7_1:8694781-8694800 Msa1008410:CDS 35.0%
!!! TTTTCTGGGATACACTATGA+GGG - chr7_1:8694782-8694801 Msa1008410:CDS 35.0%
GATTTATATGACCTGGGACT+GGG + chr7_1:8691395-8691414 None:intergenic 40.0%
TGAGGGGATTTATATGACCT+GGG + chr7_1:8691401-8691420 None:intergenic 40.0%
ATGAGGGGATTTATATGACC+TGG + chr7_1:8691402-8691421 None:intergenic 40.0%
TGTGGCTGAATTCTGTGTTA+AGG + chr7_1:8691470-8691489 None:intergenic 40.0%
TCTATGAGCTTAGGAAGCAA+AGG + chr7_1:8691657-8691676 None:intergenic 40.0%
TTGGAAGTTGGACAAAGCTT+AGG - chr7_1:8691747-8691766 Msa1008410:CDS 40.0%
! GATGGAGTAATTGATTCAGC+AGG - chr7_1:8691846-8691865 Msa1008410:CDS 40.0%
GATCCCACAATCAATTTGTG+GGG - chr7_1:8692113-8692132 Msa1008410:CDS 40.0%
ATCCCACAATCAATTTGTGG+GGG - chr7_1:8692114-8692133 Msa1008410:CDS 40.0%
ACTACGCTCTGCCTTTAAAT+GGG + chr7_1:8692141-8692160 None:intergenic 40.0%
AACTACGCTCTGCCTTTAAA+TGG + chr7_1:8692142-8692161 None:intergenic 40.0%
CCCACTAAAATAGACACCAT+AGG - chr7_1:8692176-8692195 Msa1008410:CDS 40.0%
! GTTTGAGGTTCGATTTCCTA+TGG + chr7_1:8692195-8692214 None:intergenic 40.0%
TTGAAGTGTGTCTCTTCACA+AGG + chr7_1:8692217-8692236 None:intergenic 40.0%
TTGTGAAGAGACACACTTCA+AGG - chr7_1:8692216-8692235 Msa1008410:CDS 40.0%
GAATCAACGTAGTCTAGTCT+CGG + chr7_1:8692335-8692354 None:intergenic 40.0%
AAATAACCAACCACTGGGAT+AGG - chr7_1:8692481-8692500 Msa1008410:intron 40.0%
TGGGATAGGTTTAGCAATGT+AGG - chr7_1:8692495-8692514 Msa1008410:intron 40.0%
GGGATAGGTTTAGCAATGTA+GGG - chr7_1:8692496-8692515 Msa1008410:intron 40.0%
! TGAGCTTAACTCAGTTGGTA+GGG - chr7_1:8692935-8692954 Msa1008410:intron 40.0%
AACAAGATTGTATTGCCGTG+TGG - chr7_1:8693050-8693069 Msa1008410:intron 40.0%
ACAAGATTGTATTGCCGTGT+GGG - chr7_1:8693051-8693070 Msa1008410:intron 40.0%
GGTACTATCACCAAGTACTT+GGG - chr7_1:8693179-8693198 Msa1008410:intron 40.0%
ATGTACTACACCCAAGTACT+TGG + chr7_1:8693192-8693211 None:intergenic 40.0%
! ATGGATCAGATATTCTGGGA+CGG + chr7_1:8693238-8693257 None:intergenic 40.0%
! CCAAACTGGCTCAAATATTC+CGG - chr7_1:8693424-8693443 Msa1008410:intron 40.0%
! CAAACTGGCTCAAATATTCC+GGG - chr7_1:8693425-8693444 Msa1008410:intron 40.0%
ATGATAGCTTCATGTGGTCT+CGG + chr7_1:8693484-8693503 None:intergenic 40.0%
AGACACATGATAGCTTCATG+TGG + chr7_1:8693490-8693509 None:intergenic 40.0%
! TGGAAGCAAAAGGTACAATG+CGG + chr7_1:8693563-8693582 None:intergenic 40.0%
! ACATGTCACTTGGAAGCAAA+AGG + chr7_1:8693573-8693592 None:intergenic 40.0%
TTTGCTTCCAAGTGACATGT+TGG - chr7_1:8693573-8693592 Msa1008410:intron 40.0%
TTATGAGCCAACATGTCACT+TGG + chr7_1:8693583-8693602 None:intergenic 40.0%
!! CGAGTAAGGTGGAGTTTTAT+AGG + chr7_1:8693782-8693801 None:intergenic 40.0%
CTTAGAATCCAAGACGAGTA+AGG + chr7_1:8693796-8693815 None:intergenic 40.0%
CTCTCCAAATATGCCAAAGA+TGG - chr7_1:8693908-8693927 Msa1008410:intron 40.0%
GTGTCCATCTTTGGCATATT+TGG + chr7_1:8693915-8693934 None:intergenic 40.0%
TGGACACTAAAAACGTTCCA+TGG - chr7_1:8693928-8693947 Msa1008410:intron 40.0%
CTATGAAGTTAGGACATTGG+TGG - chr7_1:8694000-8694019 Msa1008410:intron 40.0%
! GGGCCAATTGGTAGAAATTT+TGG + chr7_1:8694074-8694093 None:intergenic 40.0%
ACATATACGACAGATTGAGG+CGG + chr7_1:8694176-8694195 None:intergenic 40.0%
GTTAAGGAGATCAAGTCCTA+AGG + chr7_1:8694249-8694268 None:intergenic 40.0%
GGACGAACAATCCAAAGAAA+AGG + chr7_1:8694275-8694294 None:intergenic 40.0%
TAGTTCCAAGGAAATCGTCA+GGG + chr7_1:8694328-8694347 None:intergenic 40.0%
TTAGTTCCAAGGAAATCGTC+AGG + chr7_1:8694329-8694348 None:intergenic 40.0%
GACGATTTCCTTGGAACTAA+AGG - chr7_1:8694329-8694348 Msa1008410:CDS 40.0%
CTAAAGGCAAGATCGTTAGT+TGG - chr7_1:8694345-8694364 Msa1008410:CDS 40.0%
TGAAACAAGCTATAGCAGGA+TGG + chr7_1:8694394-8694413 None:intergenic 40.0%
GCTTGTTTCATTAGTCACTG+TGG - chr7_1:8694404-8694423 Msa1008410:CDS 40.0%
GTTTCATTAGTCACTGTGGT+TGG - chr7_1:8694408-8694427 Msa1008410:CDS 40.0%
CTGGTATACCTTTCTTGTGT+TGG - chr7_1:8694456-8694475 Msa1008410:CDS 40.0%
ATTTGTGATGTGTGGAAGGT+TGG - chr7_1:8694515-8694534 Msa1008410:CDS 40.0%
GGATTTATATGACCTGGGAC+TGG + chr7_1:8691396-8691415 None:intergenic 45.0%
AGTGATCTTGCTGCCATGTT+TGG + chr7_1:8691445-8691464 None:intergenic 45.0%
AACTTTGTCACACTCCCAGA+TGG - chr7_1:8691564-8691583 Msa1008410:CDS 45.0%
! CTTCAGGTTCCAAACCATCT+GGG + chr7_1:8691581-8691600 None:intergenic 45.0%
! TCTTCAGGTTCCAAACCATC+TGG + chr7_1:8691582-8691601 None:intergenic 45.0%
ATGAGCTTAGGAAGCAAAGG+AGG + chr7_1:8691654-8691673 None:intergenic 45.0%
CAAAGCCCATCCCATATTGA+AGG + chr7_1:8691730-8691749 None:intergenic 45.0%
! CTTCAATATGGGATGGGCTT+TGG - chr7_1:8691728-8691747 Msa1008410:CDS 45.0%
! ACCTTAGATAGTCGGCTCTT+GGG + chr7_1:8692089-8692108 None:intergenic 45.0%
! AACCTTAGATAGTCGGCTCT+TGG + chr7_1:8692090-8692109 None:intergenic 45.0%
CTACGCTCTGCCTTTAAATG+GGG + chr7_1:8692140-8692159 None:intergenic 45.0%
GTGTCTCTTCACAAGGTTTG+AGG + chr7_1:8692210-8692229 None:intergenic 45.0%
!! GTTGACCTAGTTGTTGGCTT+GGG + chr7_1:8692243-8692262 None:intergenic 45.0%
! TTTGGGGTTGACCTAGTTGT+TGG + chr7_1:8692249-8692268 None:intergenic 45.0%
CATTGCTAAACCTATCCCAG+TGG + chr7_1:8692494-8692513 None:intergenic 45.0%
GCAATGTAGGGTAGCTTATG+AGG - chr7_1:8692508-8692527 Msa1008410:intron 45.0%
GTGAGCTTAACTCAGTTGGT+AGG - chr7_1:8692934-8692953 Msa1008410:intron 45.0%
TTGTATTGCCGTGTGGGTAA+CGG - chr7_1:8693057-8693076 Msa1008410:intron 45.0%
GGGTACTATCACCAAGTACT+TGG - chr7_1:8693178-8693197 Msa1008410:intron 45.0%
!! ATCAGATATTCTGGGACGGA+GGG + chr7_1:8693234-8693253 None:intergenic 45.0%
CCGGAATATTTGAGCCAGTT+TGG + chr7_1:8693427-8693446 None:intergenic 45.0%
CTCAAATATTCCGGGATGGA+GGG - chr7_1:8693433-8693452 Msa1008410:intron 45.0%
TGATAGCTTCATGTGGTCTC+GGG + chr7_1:8693483-8693502 None:intergenic 45.0%
TACCCATCTCATGTGTTCTC+AGG - chr7_1:8693514-8693533 Msa1008410:intron 45.0%
GACCTGAGAACACATGAGAT+GGG + chr7_1:8693519-8693538 None:intergenic 45.0%
! GCAAAAGGTACAATGCGGTA+TGG + chr7_1:8693558-8693577 None:intergenic 45.0%
TTACACTTGCAGTATGGTGG+TGG + chr7_1:8693617-8693636 None:intergenic 45.0%
AAACTCCACCTTACTCGTCT+TGG - chr7_1:8693785-8693804 Msa1008410:intron 45.0%
AGAATCCAAGACGAGTAAGG+TGG + chr7_1:8693793-8693812 None:intergenic 45.0%
ATCTTGTCAAAGGTTCGCCA+TGG + chr7_1:8693948-8693967 None:intergenic 45.0%
ACCAATTGGCCCATTGATGA+TGG - chr7_1:8694082-8694101 Msa1008410:intron 45.0%
TCCATCATCAATGGGCCAAT+TGG + chr7_1:8694086-8694105 None:intergenic 45.0%
CATTACTGCCAAACTACCGA+AGG + chr7_1:8694201-8694220 None:intergenic 45.0%
CTTCGGTAGTTTGGCAGTAA+TGG - chr7_1:8694199-8694218 Msa1008410:intron 45.0%
TCGTCCGAGTAATGACAACA+AGG - chr7_1:8694289-8694308 Msa1008410:intron 45.0%
! CGATCTTGCCTTTAGTTCCA+AGG + chr7_1:8694340-8694359 None:intergenic 45.0%
GCAAATGGCCAACACAAGAA+AGG + chr7_1:8694467-8694486 None:intergenic 45.0%
GGGAGAGATAAAGAAGAAGG+TGG - chr7_1:8694577-8694596 Msa1008410:CDS 45.0%
!! TTAAATTAACTAATTAATTA+AGG - chr7_1:8692749-8692768 Msa1008410:intron 5.0%
TGTCACACTCCCAGATGGTT+TGG - chr7_1:8691569-8691588 Msa1008410:CDS 50.0%
!! ATGGGATGGGCTTTGGAAGT+TGG - chr7_1:8691735-8691754 Msa1008410:CDS 50.0%
! GACTGGCTCAGCAACTTCTT+TGG - chr7_1:8691791-8691810 Msa1008410:CDS 50.0%
GGCCCCCACAAATTGATTGT+GGG + chr7_1:8692119-8692138 None:intergenic 50.0%
TTTGTGGGGGCCCCATTTAA+AGG - chr7_1:8692127-8692146 Msa1008410:CDS 50.0%
AAGGTCCCAAGCCAACAACT+AGG - chr7_1:8692235-8692254 Msa1008410:CDS 50.0%
! GGTTGACCTAGTTGTTGGCT+TGG + chr7_1:8692244-8692263 None:intergenic 50.0%
GCTAAACCTATCCCAGTGGT+TGG + chr7_1:8692490-8692509 None:intergenic 50.0%
CCTTAGTTCGCTGAGTTGTG+AGG + chr7_1:8692806-8692825 None:intergenic 50.0%
CCTCACAACTCAGCGAACTA+AGG - chr7_1:8692803-8692822 Msa1008410:intron 50.0%
CCAACTGAGTTAAGCTCACG+AGG + chr7_1:8692933-8692952 None:intergenic 50.0%
CCTCGTGAGCTTAACTCAGT+TGG - chr7_1:8692930-8692949 Msa1008410:intron 50.0%
CCAACTTTCCGTTACCCACA+CGG + chr7_1:8693068-8693087 None:intergenic 50.0%
!! GATCAGATATTCTGGGACGG+AGG + chr7_1:8693235-8693254 None:intergenic 50.0%
CTGGCTCAAATATTCCGGGA+TGG - chr7_1:8693429-8693448 Msa1008410:intron 50.0%
GCTCAAATATTCCGGGATGG+AGG - chr7_1:8693432-8693451 Msa1008410:intron 50.0%
AGGGAGTAGAGATGTTCCAC+AGG - chr7_1:8693452-8693471 Msa1008410:intron 50.0%
GGGAGTAGAGATGTTCCACA+GGG - chr7_1:8693453-8693472 Msa1008410:intron 50.0%
CGACCTGAGAACACATGAGA+TGG + chr7_1:8693520-8693539 None:intergenic 50.0%
CGGTATGGAAAGTTCAGCAG+GGG + chr7_1:8693543-8693562 None:intergenic 50.0%
GCGGTATGGAAAGTTCAGCA+GGG + chr7_1:8693544-8693563 None:intergenic 50.0%
TGCGGTATGGAAAGTTCAGC+AGG + chr7_1:8693545-8693564 None:intergenic 50.0%
GCATACCCTGACGATTTCCT+TGG - chr7_1:8694320-8694339 Msa1008410:intron 50.0%
GTTATTCCATGCCCAGTCCC+AGG - chr7_1:8691381-8691400 Msa1008410:three_prime_UTR 55.0%
ATATGACCTGGGACTGGGCA+TGG + chr7_1:8691390-8691409 None:intergenic 55.0%
! TAGATAGTCGGCTCTTGGGC+CGG + chr7_1:8692085-8692104 None:intergenic 55.0%
GCCCAAGAGCCGACTATCTA+AGG - chr7_1:8692085-8692104 Msa1008410:CDS 55.0%
GGGCCCCCACAAATTGATTG+TGG + chr7_1:8692120-8692139 None:intergenic 55.0%
!! CCGTGTGGGTAACGGAAAGT+TGG - chr7_1:8693065-8693084 Msa1008410:intron 55.0%
!! GGACGGAGGGAGTACTTGTT+AGG + chr7_1:8693221-8693240 None:intergenic 55.0%
CATCTCTACTCCCTCCATCC+CGG + chr7_1:8693446-8693465 None:intergenic 55.0%
AGCTTCATGTGGTCTCGGGT+CGG + chr7_1:8693479-8693498 None:intergenic 55.0%
GTGGTCTCGGGTCGGCCCTG+TGG + chr7_1:8693471-8693490 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 8691345 8694848 8691345 ID=Msa1008410;Name=Msa1008410
chr7_1 mRNA 8691345 8694848 8691345 ID=Msa1008410-mRNA-1;Parent=Msa1008410;Name=Msa1008410-mRNA-1;_AED=0.00;_eAED=0.00;_QI=15|1|1|1|1|1|2|121|452
chr7_1 exon 8691345 8692316 8691345 ID=Msa1008410-mRNA-1:exon:2555;Parent=Msa1008410-mRNA-1
chr7_1 exon 8694326 8694848 8694326 ID=Msa1008410-mRNA-1:exon:2554;Parent=Msa1008410-mRNA-1
chr7_1 five_prime_UTR 8694834 8694848 8694834 ID=Msa1008410-mRNA-1:five_prime_utr;Parent=Msa1008410-mRNA-1
chr7_1 CDS 8694326 8694833 8694326 ID=Msa1008410-mRNA-1:cds;Parent=Msa1008410-mRNA-1
chr7_1 CDS 8691466 8692316 8691466 ID=Msa1008410-mRNA-1:cds;Parent=Msa1008410-mRNA-1
chr7_1 three_prime_UTR 8691345 8691465 8691345 ID=Msa1008410-mRNA-1:three_prime_utr;Parent=Msa1008410-mRNA-1
Gene Sequence

>Msa1008410

ATGGGTATCCCTCACTTTCTTGTTATTCCATGCCCAGTCCCAGGTCATATAAATCCCCTCATGCAATTATGTCATGTTTTAACCAAACATGGCAGCAAGATCACTTTCCTTAACACAGAATTCAGCCACAAAAAAATCAACAACAATAATATTTCTATTGTTGGAAAAGACAGCCTCAAAAATGAACAAAGTCAAGAAACAATAAACTTTGTCACACTCCCAGATGGTTTGGAACCTGAAGATGATAGAAGTGATCAAAAGAAAGTTCTTTTCTCATTCAAAAGAAACATGCCTCCTTTGCTTCCTAAGCTCATAGAAGATGTTAATGATATGGATGCTGAAAATAAGATTTCTTGTATTATTGTTACCTTCAATATGGGATGGGCTTTGGAAGTTGGACAAAGCTTAGGAATTAAAGGTGTTTTTCTTTGGACTGGCTCAGCAACTTCTTTGGCTTATTTTTATAGCATCCCTAAACTAATTGATGATGGAGTAATTGATTCAGCAGGAATTTATACCAAAGATCAAGAAATTCAGCTCTCTCCAAATATGCCAAAGATGGACACTAAAAACGTTCCATGGCGAACCTTTGACAAGATCGTATTTAATCATCTTGCACAAGAGATGCAAACTATGAAGTTAGGACATTGGTGGCTTTGCAACACAACTTATGATCTAGAGCATGCAACATTCTCCATCTCACCAAAATTTCTACCAATTGGCCCATTGATGATGGAAAATGACAGCAACAAAAGTTCATTCTGGCAAGAAGACATGACTTCATTAGATTGGCTAGATAAGCAACCGCCTCAATCTGTCGTATATGTTTCCTTCGGTAGTTTGGCAGTAATGGACCAAAACCAATTTAAAGAATTAGCCTTAGGACTTGATCTCCTTAACAAGCCTTTTCTTTGGATTGTTCGTCCGAGTAATGACAACAAGGTAAACTATGCATACCCTGACGATTTCCTTGGAACTAAAGGCAAGATCGTTAGTTGGGCACCGCAGAAAAAGATATTGAACCATCCTGCTATAGCTTGTTTCATTAGTCACTGTGGTTGGAATTCTAGTATAGAAGGTGTATATTCTGGTATACCTTTCTTGTGTTGGCCATTTGCAACTGATCAATTTATGAACAAGTCATATATTTGTGATGTGTGGAAGGTTGGATTTGAATTAGACAAGGATGAAAATGGGTTAGTACTAAAGGGAGAGATAAAGAAGAAGGTGGAACAATTGCTTGATGATCAAGATGTAAAAGAAAGATCATTGAAACTAAAGGAGTTAACACTGGATAACATAGTAGAAAATGGTCAATCTTCAAAGAATCTCAAAAACTTTATCAATTGGGCAATGTAA

Protein sequence

>Msa1008410

MGIPHFLVIPCPVPGHINPLMQLCHVLTKHGSKITFLNTEFSHKKINNNNISIVGKDSLKNEQSQETINFVTLPDGLEPEDDRSDQKKVLFSFKRNMPPLLPKLIEDVNDMDAENKISCIIVTFNMGWALEVGQSLGIKGVFLWTGSATSLAYFYSIPKLIDDGVIDSAGIYTKDQEIQLSPNMPKMDTKNVPWRTFDKIVFNHLAQEMQTMKLGHWWLCNTTYDLEHATFSISPKFLPIGPLMMENDSNKSSFWQEDMTSLDWLDKQPPQSVVYVSFGSLAVMDQNQFKELALGLDLLNKPFLWIVRPSNDNKVNYAYPDDFLGTKGKIVSWAPQKKILNHPAIACFISHCGWNSSIEGVYSGIPFLCWPFATDQFMNKSYICDVWKVGFELDKDENGLVLKGEIKKKVEQLLDDQDVKERSLKLKELTLDNIVENGQSSKNLKNFINWAM*