Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054850 | ABN05929.1 | 40.094 | 212 | 122 | 3 | 46 | 257 | 5 | 211 | 1.48e-38 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054850 | A2Q1W2 | 40.094 | 212 | 122 | 3 | 46 | 257 | 5 | 211 | 7.09e-39 | 144 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092410 | Msa1054850 | 0.809336 | 1.990058e-50 | -8.615850e-47 |
| Msa0371950 | Msa1054850 | 0.801755 | 7.751964e-49 | -8.615850e-47 |
| Msa0417330 | Msa1054850 | 0.802074 | 6.666274e-49 | -8.615850e-47 |
| Msa1050680 | Msa1054850 | 0.801619 | 8.265302e-49 | -8.615850e-47 |
| Msa1054840 | Msa1054850 | 0.949589 | 9.363272e-108 | -8.615850e-47 |
| Msa1054850 | Msa1279480 | 0.801713 | 7.909083e-49 | -8.615850e-47 |
| Msa0244140 | Msa1054850 | 0.815870 | 7.408420e-52 | -8.615850e-47 |
| Msa0244190 | Msa1054850 | 0.835137 | 1.998690e-56 | -8.615850e-47 |
| Msa0898320 | Msa1054850 | 0.820027 | 8.518104e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054850 | MtrunA17_Chr7g0250191 | 40.094 | 212 | 122 | 3 | 46 | 257 | 5 | 211 | 1.37e-42 | 144 |
| Msa1054850 | MtrunA17_Chr7g0250171 | 37.963 | 216 | 124 | 6 | 46 | 257 | 94 | 303 | 4.09e-34 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAAACCCTGAAATATTT+TGG | 0.154938 | 7_2:+27602704 | None:intergenic |
| TTGGTGCCACCATTGATTTC+TGG | 0.157737 | 7_2:-27601752 | Msa1054850:CDS |
| GATATATTTGTCCCTGATTC+TGG | 0.172047 | 7_2:-27601488 | Msa1054850:CDS |
| CTATGCCTCCAACACATTAT+TGG | 0.184683 | 7_2:-27602006 | Msa1054850:CDS |
| AAGCCAATGAACAGAAAATT+AGG | 0.193521 | 7_2:+27601606 | None:intergenic |
| ATCGTAATCTCTGCCATTTC+TGG | 0.214614 | 7_2:+27601842 | None:intergenic |
| TCAAAGTTAAGTAGTGATTT+TGG | 0.240898 | 7_2:+27601887 | None:intergenic |
| CCCATTTGATTTCAAATTTG+TGG | 0.250170 | 7_2:-27601927 | Msa1054850:CDS |
| TCCTAACGGTTTATTTCATT+TGG | 0.277059 | 7_2:-27601583 | Msa1054850:CDS |
| AGATTCAACCAAAATATTTC+AGG | 0.313601 | 7_2:-27602712 | Msa1054850:CDS |
| TCCACAAATTTGAAATCAAA+TGG | 0.320823 | 7_2:+27601926 | None:intergenic |
| CGAGCAAATCCTGGTATCTT+TGG | 0.341192 | 7_2:+27602635 | None:intergenic |
| TCCTGTTGTCTTGGAAGGTT+TGG | 0.343972 | 7_2:-27601513 | Msa1054850:CDS |
| AGCTGGAGTGCAGATACTTT+TGG | 0.351392 | 7_2:-27601771 | Msa1054850:CDS |
| CCACAAATTTGAAATCAAAT+GGG | 0.384522 | 7_2:+27601927 | None:intergenic |
| CACAGTCGATTTGAGCTTGA+AGG | 0.393469 | 7_2:-27602062 | Msa1054850:CDS |
| TTCTATGTTAGACCAGAATC+AGG | 0.398164 | 7_2:+27601476 | None:intergenic |
| TTATATTCAAACATGCGTTA+TGG | 0.431343 | 7_2:-27601807 | Msa1054850:CDS |
| AAAATCACTACTTAACTTTG+AGG | 0.431954 | 7_2:-27601885 | Msa1054850:CDS |
| GTATCTGCACTCCAGCTTGA+AGG | 0.439026 | 7_2:+27601777 | None:intergenic |
| CTCAAATCGACTGTGACCTT+TGG | 0.440239 | 7_2:+27602070 | None:intergenic |
| TCGTAATCTCTGCCATTTCT+GGG | 0.454670 | 7_2:+27601843 | None:intergenic |
| AGATATTGATCCTGTTGTCT+TGG | 0.460984 | 7_2:-27601522 | Msa1054850:CDS |
| GATTCAACCAAAATATTTCA+GGG | 0.462616 | 7_2:-27602711 | Msa1054850:CDS |
| AGCCAATGAACAGAAAATTA+GGG | 0.464626 | 7_2:+27601607 | None:intergenic |
| CTGTTCATTGGCTTTCCTAA+CGG | 0.469397 | 7_2:-27601597 | Msa1054850:CDS |
| ACCAAACCTTCCAAGACAAC+AGG | 0.471010 | 7_2:+27601512 | None:intergenic |
| ATTTGGAGAGTCATATATGA+AGG | 0.474122 | 7_2:-27601566 | Msa1054850:CDS |
| GATTTGCTCGTCGATGAAAT+CGG | 0.478893 | 7_2:-27602622 | Msa1054850:intron |
| ATTGATCCTGTTGTCTTGGA+AGG | 0.489162 | 7_2:-27601518 | Msa1054850:CDS |
| ATGCACAAGACTTCCACGTC+AGG | 0.494894 | 7_2:-27601704 | Msa1054850:CDS |
| TTTCATCGACGAGCAAATCC+TGG | 0.495857 | 7_2:+27602626 | None:intergenic |
| ATGGTGTTGCTCCTTCAAGC+TGG | 0.514753 | 7_2:-27601788 | Msa1054850:CDS |
| TCCAAATGAAATAAACCGTT+AGG | 0.517264 | 7_2:+27601582 | None:intergenic |
| CACAAATTTGAAATCAAATG+GGG | 0.518034 | 7_2:+27601928 | None:intergenic |
| TTTGTGTAACAGGTTATGGA+AGG | 0.553200 | 7_2:-27602753 | None:intergenic |
| GGGATTAATGTGGCTTGTGG+TGG | 0.557020 | 7_2:-27601683 | Msa1054850:CDS |
| AAACACCAATAATGTGTTGG+AGG | 0.557800 | 7_2:+27602001 | None:intergenic |
| AGCATCAGTCCAGAAATCAA+TGG | 0.574324 | 7_2:+27601743 | None:intergenic |
| AGTAAACACCAATAATGTGT+TGG | 0.579367 | 7_2:+27601998 | None:intergenic |
| TATGAAGGAACATCAACAGA+AGG | 0.620836 | 7_2:-27601551 | Msa1054850:CDS |
| TCTATGTTAGACCAGAATCA+GGG | 0.630793 | 7_2:+27601477 | None:intergenic |
| TGCACAAGACTTCCACGTCA+GGG | 0.632109 | 7_2:-27601703 | Msa1054850:CDS |
| AACCTCAAAAGATTTACCAA+AGG | 0.640474 | 7_2:-27602086 | Msa1054850:CDS |
| TGGTATGTACCAAAGATACC+AGG | 0.647631 | 7_2:-27602644 | Msa1054850:CDS |
| TCAGGGATTAATGTGGCTTG+TGG | 0.656838 | 7_2:-27601686 | Msa1054850:CDS |
| ATCAGTCCAGAAATCAATGG+TGG | 0.662217 | 7_2:+27601746 | None:intergenic |
| AGCCACATTAATCCCTGACG+TGG | 0.665507 | 7_2:+27601691 | None:intergenic |
| TTCCACGTCAGGGATTAATG+TGG | 0.692760 | 7_2:-27601693 | Msa1054850:CDS |
| GGTTATGGAAGGTTGTCGTG+TGG | 0.742234 | 7_2:-27602742 | Msa1054850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATCAAGAATTTTTAATG+CGG | - | chr7_2:27601531-27601550 | Msa1054850:CDS | 15.0% |
| !!! | TTTTTTGGTTTATTACATTA+GGG | - | chr7_2:27602576-27602595 | Msa1054850:intron | 15.0% |
| !!! | TTTATCAAGAATTTTTAATG+CGG | - | chr7_2:27601531-27601550 | Msa1054850:CDS | 15.0% |
| !!! | TTTTTTGGTTTATTACATTA+GGG | - | chr7_2:27602576-27602595 | Msa1054850:intron | 15.0% |
| !! | AGGCGTAAATTAAAATAAAT+AGG | - | chr7_2:27601727-27601746 | Msa1054850:CDS | 20.0% |
| !!! | AATAGAATTAGAACATCTTT+TGG | + | chr7_2:27602026-27602045 | None:intergenic | 20.0% |
| !! | AATGTAATAAACCAAAAAAG+AGG | + | chr7_2:27602575-27602594 | None:intergenic | 20.0% |
| !!! | CTTTTTTGGTTTATTACATT+AGG | - | chr7_2:27602575-27602594 | Msa1054850:intron | 20.0% |
| !!! | TTTTTGGTTTATTACATTAG+GGG | - | chr7_2:27602577-27602596 | Msa1054850:intron | 20.0% |
| !! | AGGCGTAAATTAAAATAAAT+AGG | - | chr7_2:27601727-27601746 | Msa1054850:CDS | 20.0% |
| !!! | AATAGAATTAGAACATCTTT+TGG | + | chr7_2:27602026-27602045 | None:intergenic | 20.0% |
| !! | AATGTAATAAACCAAAAAAG+AGG | + | chr7_2:27602575-27602594 | None:intergenic | 20.0% |
| !!! | CTTTTTTGGTTTATTACATT+AGG | - | chr7_2:27602575-27602594 | Msa1054850:intron | 20.0% |
| !!! | TTTTTGGTTTATTACATTAG+GGG | - | chr7_2:27602577-27602596 | Msa1054850:intron | 20.0% |
| ! | AGATTCAACCAAAATATTTC+AGG | - | chr7_2:27601507-27601526 | Msa1054850:CDS | 25.0% |
| ! | GATTCAACCAAAATATTTCA+GGG | - | chr7_2:27601508-27601527 | Msa1054850:CDS | 25.0% |
| !! | TGATAAACCCTGAAATATTT+TGG | + | chr7_2:27601518-27601537 | None:intergenic | 25.0% |
| !!! | TATTTAGCCTTAAAAAACGA+AGG | + | chr7_2:27601630-27601649 | None:intergenic | 25.0% |
| !!! | ATCCATTAAAGTATTTTCCT+GGG | + | chr7_2:27601684-27601703 | None:intergenic | 25.0% |
| !!! | TATCCATTAAAGTATTTTCC+TGG | + | chr7_2:27601685-27601704 | None:intergenic | 25.0% |
| ! | TTTAATGCTAGCAAAAAGAT+GGG | + | chr7_2:27601949-27601968 | None:intergenic | 25.0% |
| ! | ATTTAATGCTAGCAAAAAGA+TGG | + | chr7_2:27601950-27601969 | None:intergenic | 25.0% |
| !!! | TGGTGTTTACTCATTTTTTT+TGG | - | chr7_2:27602233-27602252 | Msa1054850:intron | 25.0% |
| !!! | TGTTTACTCATTTTTTTTGG+TGG | - | chr7_2:27602236-27602255 | Msa1054850:intron | 25.0% |
| !! | ATTTTCTTGCTTGAGAAATT+AGG | + | chr7_2:27602265-27602284 | None:intergenic | 25.0% |
| !! | CACAAATTTGAAATCAAATG+GGG | + | chr7_2:27602294-27602313 | None:intergenic | 25.0% |
| !! | CCACAAATTTGAAATCAAAT+GGG | + | chr7_2:27602295-27602314 | None:intergenic | 25.0% |
| !! | TCCACAAATTTGAAATCAAA+TGG | + | chr7_2:27602296-27602315 | None:intergenic | 25.0% |
| !! | TCAAAGTTAAGTAGTGATTT+TGG | + | chr7_2:27602335-27602354 | None:intergenic | 25.0% |
| ! | AAAATCACTACTTAACTTTG+AGG | - | chr7_2:27602334-27602353 | Msa1054850:intron | 25.0% |
| ! | TTATATTCAAACATGCGTTA+TGG | - | chr7_2:27602412-27602431 | Msa1054850:intron | 25.0% |
| !! | TTTATTACATTAGGGGTTTT+TGG | - | chr7_2:27602584-27602603 | Msa1054850:intron | 25.0% |
| !! | TTATTACATTAGGGGTTTTT+GGG | - | chr7_2:27602585-27602604 | Msa1054850:intron | 25.0% |
| ! | AGATTCAACCAAAATATTTC+AGG | - | chr7_2:27601507-27601526 | Msa1054850:CDS | 25.0% |
| ! | GATTCAACCAAAATATTTCA+GGG | - | chr7_2:27601508-27601527 | Msa1054850:CDS | 25.0% |
| !! | TGATAAACCCTGAAATATTT+TGG | + | chr7_2:27601518-27601537 | None:intergenic | 25.0% |
| !!! | TATTTAGCCTTAAAAAACGA+AGG | + | chr7_2:27601630-27601649 | None:intergenic | 25.0% |
| !!! | ATCCATTAAAGTATTTTCCT+GGG | + | chr7_2:27601684-27601703 | None:intergenic | 25.0% |
| !!! | TATCCATTAAAGTATTTTCC+TGG | + | chr7_2:27601685-27601704 | None:intergenic | 25.0% |
| ! | TTTAATGCTAGCAAAAAGAT+GGG | + | chr7_2:27601949-27601968 | None:intergenic | 25.0% |
| ! | ATTTAATGCTAGCAAAAAGA+TGG | + | chr7_2:27601950-27601969 | None:intergenic | 25.0% |
| !!! | TGGTGTTTACTCATTTTTTT+TGG | - | chr7_2:27602233-27602252 | Msa1054850:intron | 25.0% |
| !!! | TGTTTACTCATTTTTTTTGG+TGG | - | chr7_2:27602236-27602255 | Msa1054850:intron | 25.0% |
| !! | ATTTTCTTGCTTGAGAAATT+AGG | + | chr7_2:27602265-27602284 | None:intergenic | 25.0% |
| !! | CACAAATTTGAAATCAAATG+GGG | + | chr7_2:27602294-27602313 | None:intergenic | 25.0% |
| !! | CCACAAATTTGAAATCAAAT+GGG | + | chr7_2:27602295-27602314 | None:intergenic | 25.0% |
| !! | TCCACAAATTTGAAATCAAA+TGG | + | chr7_2:27602296-27602315 | None:intergenic | 25.0% |
| !! | TCAAAGTTAAGTAGTGATTT+TGG | + | chr7_2:27602335-27602354 | None:intergenic | 25.0% |
| ! | AAAATCACTACTTAACTTTG+AGG | - | chr7_2:27602334-27602353 | Msa1054850:intron | 25.0% |
| ! | TTATATTCAAACATGCGTTA+TGG | - | chr7_2:27602412-27602431 | Msa1054850:intron | 25.0% |
| !! | TTTATTACATTAGGGGTTTT+TGG | - | chr7_2:27602584-27602603 | Msa1054850:intron | 25.0% |
| !! | TTATTACATTAGGGGTTTTT+GGG | - | chr7_2:27602585-27602604 | Msa1054850:intron | 25.0% |
| !! | TTAAAGTATTTTCCTGGGAT+CGG | + | chr7_2:27601679-27601698 | None:intergenic | 30.0% |
| ATCCCAGGAAAATACTTTAA+TGG | - | chr7_2:27601679-27601698 | Msa1054850:CDS | 30.0% | |
| TTACATCAGTCATTATCTCT+AGG | - | chr7_2:27601755-27601774 | Msa1054850:CDS | 30.0% | |
| ! | TCATGCTAATTTGTGTCTTT+AGG | - | chr7_2:27601778-27601797 | Msa1054850:CDS | 30.0% |
| TGTTAGCGTAATAAAAAGAG+CGG | - | chr7_2:27601904-27601923 | Msa1054850:CDS | 30.0% | |
| !! | ATTAGTGAGTAGCTTTGTAA+TGG | + | chr7_2:27601978-27601997 | None:intergenic | 30.0% |
| TACAAAGCTACTCACTAATT+AGG | - | chr7_2:27601979-27601998 | Msa1054850:CDS | 30.0% | |
| ACAAAGCTACTCACTAATTA+GGG | - | chr7_2:27601980-27601999 | Msa1054850:CDS | 30.0% | |
| ATATAGTTTCACGACAAGTA+TGG | + | chr7_2:27602061-27602080 | None:intergenic | 30.0% | |
| TGTCGTGAAACTATATTCAT+TGG | - | chr7_2:27602065-27602084 | Msa1054850:CDS | 30.0% | |
| !!! | GGTAAATCTTTTGAGGTTAT+AGG | + | chr7_2:27602131-27602150 | None:intergenic | 30.0% |
| AACCTCAAAAGATTTACCAA+AGG | - | chr7_2:27602133-27602152 | Msa1054850:intron | 30.0% | |
| AGTAAACACCAATAATGTGT+TGG | + | chr7_2:27602224-27602243 | None:intergenic | 30.0% | |
| ! | CCCATTTGATTTCAAATTTG+TGG | - | chr7_2:27602292-27602311 | Msa1054850:intron | 30.0% |
| !!! | TGATTTTGGAGTACTTTTTG+TGG | + | chr7_2:27602321-27602340 | None:intergenic | 30.0% |
| ! | TTCCCTAATTTTCTGTTCAT+TGG | - | chr7_2:27602610-27602629 | Msa1054850:intron | 30.0% |
| AGCCAATGAACAGAAAATTA+GGG | + | chr7_2:27602615-27602634 | None:intergenic | 30.0% | |
| AAGCCAATGAACAGAAAATT+AGG | + | chr7_2:27602616-27602635 | None:intergenic | 30.0% | |
| TCCTAACGGTTTATTTCATT+TGG | - | chr7_2:27602636-27602655 | Msa1054850:CDS | 30.0% | |
| TCCAAATGAAATAAACCGTT+AGG | + | chr7_2:27602640-27602659 | None:intergenic | 30.0% | |
| ATTTGGAGAGTCATATATGA+AGG | - | chr7_2:27602653-27602672 | Msa1054850:CDS | 30.0% | |
| !! | TTAAAGTATTTTCCTGGGAT+CGG | + | chr7_2:27601679-27601698 | None:intergenic | 30.0% |
| ATCCCAGGAAAATACTTTAA+TGG | - | chr7_2:27601679-27601698 | Msa1054850:CDS | 30.0% | |
| TTACATCAGTCATTATCTCT+AGG | - | chr7_2:27601755-27601774 | Msa1054850:CDS | 30.0% | |
| ! | TCATGCTAATTTGTGTCTTT+AGG | - | chr7_2:27601778-27601797 | Msa1054850:CDS | 30.0% |
| TGTTAGCGTAATAAAAAGAG+CGG | - | chr7_2:27601904-27601923 | Msa1054850:CDS | 30.0% | |
| !! | ATTAGTGAGTAGCTTTGTAA+TGG | + | chr7_2:27601978-27601997 | None:intergenic | 30.0% |
| TACAAAGCTACTCACTAATT+AGG | - | chr7_2:27601979-27601998 | Msa1054850:CDS | 30.0% | |
| ACAAAGCTACTCACTAATTA+GGG | - | chr7_2:27601980-27601999 | Msa1054850:CDS | 30.0% | |
| ATATAGTTTCACGACAAGTA+TGG | + | chr7_2:27602061-27602080 | None:intergenic | 30.0% | |
| TGTCGTGAAACTATATTCAT+TGG | - | chr7_2:27602065-27602084 | Msa1054850:CDS | 30.0% | |
| !!! | GGTAAATCTTTTGAGGTTAT+AGG | + | chr7_2:27602131-27602150 | None:intergenic | 30.0% |
| AACCTCAAAAGATTTACCAA+AGG | - | chr7_2:27602133-27602152 | Msa1054850:intron | 30.0% | |
| AGTAAACACCAATAATGTGT+TGG | + | chr7_2:27602224-27602243 | None:intergenic | 30.0% | |
| ! | CCCATTTGATTTCAAATTTG+TGG | - | chr7_2:27602292-27602311 | Msa1054850:intron | 30.0% |
| !!! | TGATTTTGGAGTACTTTTTG+TGG | + | chr7_2:27602321-27602340 | None:intergenic | 30.0% |
| ! | TTCCCTAATTTTCTGTTCAT+TGG | - | chr7_2:27602610-27602629 | Msa1054850:intron | 30.0% |
| AGCCAATGAACAGAAAATTA+GGG | + | chr7_2:27602615-27602634 | None:intergenic | 30.0% | |
| AAGCCAATGAACAGAAAATT+AGG | + | chr7_2:27602616-27602635 | None:intergenic | 30.0% | |
| TCCTAACGGTTTATTTCATT+TGG | - | chr7_2:27602636-27602655 | Msa1054850:CDS | 30.0% | |
| TCCAAATGAAATAAACCGTT+AGG | + | chr7_2:27602640-27602659 | None:intergenic | 30.0% | |
| ATTTGGAGAGTCATATATGA+AGG | - | chr7_2:27602653-27602672 | Msa1054850:CDS | 30.0% | |
| !!! | TTAGTCGCCTTCGTTTTTTA+AGG | - | chr7_2:27601620-27601639 | Msa1054850:CDS | 35.0% |
| TGATTTATATATCCGATCCC+AGG | - | chr7_2:27601664-27601683 | Msa1054850:CDS | 35.0% | |
| ! | CTTTAATGGATAGAAGACTG+TGG | - | chr7_2:27601693-27601712 | Msa1054850:CDS | 35.0% |
| AGACTGTGGATTCAAGATTT+AGG | - | chr7_2:27601707-27601726 | Msa1054850:CDS | 35.0% | |
| ! | GACCTTTGGTAAATCTTTTG+AGG | + | chr7_2:27602138-27602157 | None:intergenic | 35.0% |
| AAACACCAATAATGTGTTGG+AGG | + | chr7_2:27602221-27602240 | None:intergenic | 35.0% | |
| ! | TTTTGCTTTCTTCCCAGAAA+TGG | - | chr7_2:27602364-27602383 | Msa1054850:intron | 35.0% |
| !!! | CAATGAAGCTTCCTCTTTTT+TGG | - | chr7_2:27602561-27602580 | Msa1054850:intron | 35.0% |
| TATGAAGGAACATCAACAGA+AGG | - | chr7_2:27602668-27602687 | Msa1054850:CDS | 35.0% | |
| AGATATTGATCCTGTTGTCT+TGG | - | chr7_2:27602697-27602716 | Msa1054850:CDS | 35.0% | |
| GATATATTTGTCCCTGATTC+TGG | - | chr7_2:27602731-27602750 | Msa1054850:CDS | 35.0% | |
| !!! | TTAGTCGCCTTCGTTTTTTA+AGG | - | chr7_2:27601620-27601639 | Msa1054850:CDS | 35.0% |
| TGATTTATATATCCGATCCC+AGG | - | chr7_2:27601664-27601683 | Msa1054850:CDS | 35.0% | |
| ! | CTTTAATGGATAGAAGACTG+TGG | - | chr7_2:27601693-27601712 | Msa1054850:CDS | 35.0% |
| AGACTGTGGATTCAAGATTT+AGG | - | chr7_2:27601707-27601726 | Msa1054850:CDS | 35.0% | |
| ! | GACCTTTGGTAAATCTTTTG+AGG | + | chr7_2:27602138-27602157 | None:intergenic | 35.0% |
| AAACACCAATAATGTGTTGG+AGG | + | chr7_2:27602221-27602240 | None:intergenic | 35.0% | |
| ! | TTTTGCTTTCTTCCCAGAAA+TGG | - | chr7_2:27602364-27602383 | Msa1054850:intron | 35.0% |
| !!! | CAATGAAGCTTCCTCTTTTT+TGG | - | chr7_2:27602561-27602580 | Msa1054850:intron | 35.0% |
| TATGAAGGAACATCAACAGA+AGG | - | chr7_2:27602668-27602687 | Msa1054850:CDS | 35.0% | |
| AGATATTGATCCTGTTGTCT+TGG | - | chr7_2:27602697-27602716 | Msa1054850:CDS | 35.0% | |
| GATATATTTGTCCCTGATTC+TGG | - | chr7_2:27602731-27602750 | Msa1054850:CDS | 35.0% | |
| !!! | ATTCAGCTTTTTCAGCTTCG+TGG | - | chr7_2:27601555-27601574 | Msa1054850:CDS | 40.0% |
| TGGTATGTACCAAAGATACC+AGG | - | chr7_2:27601575-27601594 | Msa1054850:CDS | 40.0% | |
| ! | GATTTGCTCGTCGATGAAAT+CGG | - | chr7_2:27601597-27601616 | Msa1054850:CDS | 40.0% |
| TTCACGACAAGTATGGCATA+GGG | + | chr7_2:27602054-27602073 | None:intergenic | 40.0% | |
| TTTCACGACAAGTATGGCAT+AGG | + | chr7_2:27602055-27602074 | None:intergenic | 40.0% | |
| ! | CTTTTGTACGTTTTGCACGT+GGG | - | chr7_2:27602180-27602199 | Msa1054850:intron | 40.0% |
| CTATGCCTCCAACACATTAT+TGG | - | chr7_2:27602213-27602232 | Msa1054850:intron | 40.0% | |
| ! | TCGTAATCTCTGCCATTTCT+GGG | + | chr7_2:27602379-27602398 | None:intergenic | 40.0% |
| ! | ATCGTAATCTCTGCCATTTC+TGG | + | chr7_2:27602380-27602399 | None:intergenic | 40.0% |
| ATCAGTCCAGAAATCAATGG+TGG | + | chr7_2:27602476-27602495 | None:intergenic | 40.0% | |
| AGCATCAGTCCAGAAATCAA+TGG | + | chr7_2:27602479-27602498 | None:intergenic | 40.0% | |
| !! | CTGTTCATTGGCTTTCCTAA+CGG | - | chr7_2:27602622-27602641 | Msa1054850:intron | 40.0% |
| ATTGATCCTGTTGTCTTGGA+AGG | - | chr7_2:27602701-27602720 | Msa1054850:CDS | 40.0% | |
| !!! | ATTCAGCTTTTTCAGCTTCG+TGG | - | chr7_2:27601555-27601574 | Msa1054850:CDS | 40.0% |
| TGGTATGTACCAAAGATACC+AGG | - | chr7_2:27601575-27601594 | Msa1054850:CDS | 40.0% | |
| ! | GATTTGCTCGTCGATGAAAT+CGG | - | chr7_2:27601597-27601616 | Msa1054850:CDS | 40.0% |
| TTCACGACAAGTATGGCATA+GGG | + | chr7_2:27602054-27602073 | None:intergenic | 40.0% | |
| TTTCACGACAAGTATGGCAT+AGG | + | chr7_2:27602055-27602074 | None:intergenic | 40.0% | |
| ! | CTTTTGTACGTTTTGCACGT+GGG | - | chr7_2:27602180-27602199 | Msa1054850:intron | 40.0% |
| CTATGCCTCCAACACATTAT+TGG | - | chr7_2:27602213-27602232 | Msa1054850:intron | 40.0% | |
| ! | TCGTAATCTCTGCCATTTCT+GGG | + | chr7_2:27602379-27602398 | None:intergenic | 40.0% |
| ! | ATCGTAATCTCTGCCATTTC+TGG | + | chr7_2:27602380-27602399 | None:intergenic | 40.0% |
| ATCAGTCCAGAAATCAATGG+TGG | + | chr7_2:27602476-27602495 | None:intergenic | 40.0% | |
| AGCATCAGTCCAGAAATCAA+TGG | + | chr7_2:27602479-27602498 | None:intergenic | 40.0% | |
| !! | CTGTTCATTGGCTTTCCTAA+CGG | - | chr7_2:27602622-27602641 | Msa1054850:intron | 40.0% |
| ATTGATCCTGTTGTCTTGGA+AGG | - | chr7_2:27602701-27602720 | Msa1054850:CDS | 40.0% | |
| CGAGCAAATCCTGGTATCTT+TGG | + | chr7_2:27601587-27601606 | None:intergenic | 45.0% | |
| TTTCATCGACGAGCAAATCC+TGG | + | chr7_2:27601596-27601615 | None:intergenic | 45.0% | |
| TAGCAAAAAGATGGGCACTC+AGG | + | chr7_2:27601941-27601960 | None:intergenic | 45.0% | |
| !! | TGGATTCCTTGCACTGATTC+AGG | - | chr7_2:27602085-27602104 | Msa1054850:CDS | 45.0% |
| TTTCTGCCTGAATCAGTGCA+AGG | + | chr7_2:27602094-27602113 | None:intergenic | 45.0% | |
| CTCAAATCGACTGTGACCTT+TGG | + | chr7_2:27602152-27602171 | None:intergenic | 45.0% | |
| !! | CACAGTCGATTTGAGCTTGA+AGG | - | chr7_2:27602157-27602176 | Msa1054850:intron | 45.0% |
| ! | GCTTTTGTACGTTTTGCACG+TGG | - | chr7_2:27602179-27602198 | Msa1054850:intron | 45.0% |
| ! | AGCTGGAGTGCAGATACTTT+TGG | - | chr7_2:27602448-27602467 | Msa1054850:intron | 45.0% |
| !! | TTGGTGCCACCATTGATTTC+TGG | - | chr7_2:27602467-27602486 | Msa1054850:intron | 45.0% |
| TTCCACGTCAGGGATTAATG+TGG | - | chr7_2:27602526-27602545 | Msa1054850:intron | 45.0% | |
| TCAGGGATTAATGTGGCTTG+TGG | - | chr7_2:27602533-27602552 | Msa1054850:intron | 45.0% | |
| TCCTGTTGTCTTGGAAGGTT+TGG | - | chr7_2:27602706-27602725 | Msa1054850:CDS | 45.0% | |
| ACCAAACCTTCCAAGACAAC+AGG | + | chr7_2:27602710-27602729 | None:intergenic | 45.0% | |
| CCCTGATTCTGGTCTAACAT+AGG | - | chr7_2:27602742-27602761 | Msa1054850:CDS | 45.0% | |
| CGAGCAAATCCTGGTATCTT+TGG | + | chr7_2:27601587-27601606 | None:intergenic | 45.0% | |
| TTTCATCGACGAGCAAATCC+TGG | + | chr7_2:27601596-27601615 | None:intergenic | 45.0% | |
| TAGCAAAAAGATGGGCACTC+AGG | + | chr7_2:27601941-27601960 | None:intergenic | 45.0% | |
| !! | TGGATTCCTTGCACTGATTC+AGG | - | chr7_2:27602085-27602104 | Msa1054850:CDS | 45.0% |
| TTTCTGCCTGAATCAGTGCA+AGG | + | chr7_2:27602094-27602113 | None:intergenic | 45.0% | |
| CTCAAATCGACTGTGACCTT+TGG | + | chr7_2:27602152-27602171 | None:intergenic | 45.0% | |
| !! | CACAGTCGATTTGAGCTTGA+AGG | - | chr7_2:27602157-27602176 | Msa1054850:intron | 45.0% |
| ! | GCTTTTGTACGTTTTGCACG+TGG | - | chr7_2:27602179-27602198 | Msa1054850:intron | 45.0% |
| ! | AGCTGGAGTGCAGATACTTT+TGG | - | chr7_2:27602448-27602467 | Msa1054850:intron | 45.0% |
| !! | TTGGTGCCACCATTGATTTC+TGG | - | chr7_2:27602467-27602486 | Msa1054850:intron | 45.0% |
| TTCCACGTCAGGGATTAATG+TGG | - | chr7_2:27602526-27602545 | Msa1054850:intron | 45.0% | |
| TCAGGGATTAATGTGGCTTG+TGG | - | chr7_2:27602533-27602552 | Msa1054850:intron | 45.0% | |
| TCCTGTTGTCTTGGAAGGTT+TGG | - | chr7_2:27602706-27602725 | Msa1054850:CDS | 45.0% | |
| ACCAAACCTTCCAAGACAAC+AGG | + | chr7_2:27602710-27602729 | None:intergenic | 45.0% | |
| ! | TGTACGTTTTGCACGTGGGA+AGG | - | chr7_2:27602184-27602203 | Msa1054850:intron | 50.0% |
| !! | ATGGTGTTGCTCCTTCAAGC+TGG | - | chr7_2:27602431-27602450 | Msa1054850:intron | 50.0% |
| GTATCTGCACTCCAGCTTGA+AGG | + | chr7_2:27602445-27602464 | None:intergenic | 50.0% | |
| ATGCACAAGACTTCCACGTC+AGG | - | chr7_2:27602515-27602534 | Msa1054850:intron | 50.0% | |
| TGCACAAGACTTCCACGTCA+GGG | - | chr7_2:27602516-27602535 | Msa1054850:intron | 50.0% | |
| AGCCACATTAATCCCTGACG+TGG | + | chr7_2:27602531-27602550 | None:intergenic | 50.0% | |
| ! | GGGATTAATGTGGCTTGTGG+TGG | - | chr7_2:27602536-27602555 | Msa1054850:intron | 50.0% |
| ! | TGTACGTTTTGCACGTGGGA+AGG | - | chr7_2:27602184-27602203 | Msa1054850:intron | 50.0% |
| !! | ATGGTGTTGCTCCTTCAAGC+TGG | - | chr7_2:27602431-27602450 | Msa1054850:intron | 50.0% |
| GTATCTGCACTCCAGCTTGA+AGG | + | chr7_2:27602445-27602464 | None:intergenic | 50.0% | |
| ATGCACAAGACTTCCACGTC+AGG | - | chr7_2:27602515-27602534 | Msa1054850:intron | 50.0% | |
| TGCACAAGACTTCCACGTCA+GGG | - | chr7_2:27602516-27602535 | Msa1054850:intron | 50.0% | |
| AGCCACATTAATCCCTGACG+TGG | + | chr7_2:27602531-27602550 | None:intergenic | 50.0% | |
| ! | GGGATTAATGTGGCTTGTGG+TGG | - | chr7_2:27602536-27602555 | Msa1054850:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 27601478 | 27602763 | 27601478 | ID=Msa1054850;Name=Msa1054850 |
| chr7_2 | mRNA | 27601478 | 27602763 | 27601478 | ID=Msa1054850-mRNA-1;Parent=Msa1054850;Name=Msa1054850-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|1|0|1|0|0.5|2|0|265 |
| chr7_2 | exon | 27602623 | 27602763 | 27602623 | ID=Msa1054850-mRNA-1:exon:5794;Parent=Msa1054850-mRNA-1 |
| chr7_2 | exon | 27601478 | 27602134 | 27601478 | ID=Msa1054850-mRNA-1:exon:5793;Parent=Msa1054850-mRNA-1 |
| chr7_2 | CDS | 27602623 | 27602763 | 27602623 | ID=Msa1054850-mRNA-1:cds;Parent=Msa1054850-mRNA-1 |
| chr7_2 | CDS | 27601478 | 27602134 | 27601478 | ID=Msa1054850-mRNA-1:cds;Parent=Msa1054850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
