AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0417330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417330 MtrunA17_Chr3g0114751 97.727 220 2 1 1 220 1 217 8.33e-160 440
Msa0417330 MtrunA17_Chr5g0423921 77.895 190 37 2 32 220 27 212 1.16e-104 300
Msa0417330 MtrunA17_Chr8g0380801 67.453 212 63 4 12 220 3 211 3.31e-94 274
Msa0417330 MtrunA17_Chr2g0277981 63.158 209 69 3 13 220 5 206 1.39e-92 270
Msa0417330 MtrunA17_Chr4g0042721 44.330 194 103 3 31 220 24 216 9.18e-58 182
Msa0417330 MtrunA17_Chr6g0453521 44.809 183 95 3 43 220 31 212 3.81e-55 175
Msa0417330 MtrunA17_Chr8g0380821 73.874 111 27 1 112 220 2 112 1.25e-53 167
Msa0417330 MtrunA17_Chr5g0417891 34.081 223 135 5 4 220 3 219 3.61e-43 144
Msa0417330 MtrunA17_Chr7g0217911 41.667 144 83 1 78 220 5 148 1.88e-38 130
Msa0417330 MtrunA17_Chr5g0417931 38.798 183 104 5 44 220 43 223 2.56e-33 119
Msa0417330 MtrunA17_Chr5g0417901 33.520 179 113 3 44 220 40 214 2.07e-28 106
Msa0417330 MtrunA17_Chr1g0204631 25.137 183 132 3 36 216 27 206 2.68e-14 68.9
Msa0417330 MtrunA17_Chr7g0260361 27.778 144 101 2 73 216 12 152 1.49e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417330 AT1G09580.1 63.415 205 71 2 18 220 15 217 6.47e-97 281
Msa0417330 AT1G57620.1 58.108 222 81 4 1 220 1 212 5.13e-91 266
Msa0417330 AT1G21900.1 63.462 208 72 3 16 220 10 216 1.46e-90 265
Msa0417330 AT3G10780.1 53.535 198 86 3 28 220 21 217 1.44e-67 207
Msa0417330 AT1G26690.1 40.385 208 115 4 17 220 12 214 4.46e-54 172
Msa0417330 AT1G14010.1 39.713 209 119 4 16 220 7 212 7.37e-52 167
Msa0417330 AT2G03290.1 41.327 196 111 2 29 220 18 213 1.16e-51 166
Msa0417330 AT1G69460.1 41.117 197 109 4 29 220 20 214 2.47e-51 166
Msa0417330 AT3G29070.1 38.860 193 113 3 32 220 34 225 5.32e-45 150
Msa0417330 AT2G03040.1 38.926 149 87 2 29 173 18 166 6.39e-34 119
Msa0417330 AT3G22845.1 26.230 183 130 3 36 216 28 207 3.88e-14 68.9

Find 84 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACATATATTCTGAATTT+AGG 0.195085 3_2:-64479005 Msa0417330:three_prime_UTR
TTGGGACTCTGTTGCTAAAA+AGG 0.253132 3_2:-64480040 Msa0417330:CDS
ATCGGCAACAACATAGTAAT+TGG 0.296460 3_2:+64481354 None:intergenic
GGTTGACTGTGGAATAAAAT+AGG 0.300784 3_2:+64481556 None:intergenic
GTCTCTTGGCGTATGCGTTT+CGG 0.305564 3_2:-64479221 Msa0417330:CDS
GTAGCTATGTGGCATGCTTT+TGG 0.326986 3_2:-64480131 Msa0417330:CDS
AGCAACAGAGTCCCAATCTT+TGG 0.327971 3_2:+64480047 None:intergenic
ATCTGTTATATTTAAAGAAC+AGG 0.333875 3_2:-64479838 Msa0417330:intron
ATTAGTCTTGAATGGAAAAC+TGG 0.334614 3_2:-64480078 Msa0417330:CDS
ACAATTCGTGTTCCTGAACT+TGG 0.360761 3_2:+64481508 None:intergenic
CTGGAATCTCTGCCAAAGAT+TGG 0.361290 3_2:-64480059 Msa0417330:CDS
CTTGTACTCTTTCTTTCTCT+CGG 0.364515 3_2:-64481611 Msa0417330:five_prime_UTR
TGGTTAAGTATCCCCAGTTC+AGG 0.366565 3_2:-64481424 Msa0417330:CDS
GTTCTTCAATTAGTCTTGAA+TGG 0.366713 3_2:-64480086 Msa0417330:CDS
GGTACAAAGACTTTGGTCTA+TGG 0.366715 3_2:+64481642 None:intergenic
CTAAAACGACAACATGTGTT+TGG 0.367209 3_2:+64481377 None:intergenic
CATGTTACTTATAGTAGAAT+AGG 0.377565 3_2:-64478924 Msa0417330:three_prime_UTR
AACCAAATGGCCTTGGTTTG+AGG 0.382119 3_2:+64481442 None:intergenic
TTGTACTCTTTCTTTCTCTC+GGG 0.388191 3_2:-64481610 Msa0417330:five_prime_UTR
ACCAAATGGCCTTGGTTTGA+GGG 0.400461 3_2:+64481443 None:intergenic
AAAGGCTTCAACCCAAGTTC+AGG 0.405800 3_2:-64481520 Msa0417330:CDS
TCCCTCAAACCAAGGCCATT+TGG 0.405823 3_2:-64481444 Msa0417330:CDS
ATCATTTGCATTAAACATGC+TGG 0.406313 3_2:+64478886 None:intergenic
TTGTGAAGATTATTTCCATA+TGG 0.419312 3_2:+64480204 None:intergenic
TGTATCTGAGACGCTACTTT+CGG 0.424544 3_2:-64479180 Msa0417330:CDS
GGACTCAAGTTGGCGTGTAC+GGG 0.437615 3_2:+64481678 None:intergenic
TGGACTCAAGTTGGCGTGTA+CGG 0.438408 3_2:+64481677 None:intergenic
CCACAGTCAACCATCGGTTA+TGG 0.438644 3_2:-64481545 Msa0417330:exon
GATACTTAACCAAATGGCCT+TGG 0.444311 3_2:+64481435 None:intergenic
CAACCATCGGTTATGGCAAA+AGG 0.447602 3_2:-64481538 Msa0417330:exon
TGGAATCTCTGCCAAAGATT+GGG 0.449888 3_2:-64480058 Msa0417330:CDS
CACGCACTTAGTTCCTGAAC+TGG 0.458031 3_2:+64481411 None:intergenic
TGTTGTTGCCGATAATATCC+AGG 0.467878 3_2:-64481344 Msa0417330:CDS
TGTAAATGCAAATTGACCTT+GGG 0.478123 3_2:+64480167 None:intergenic
CTTGAGCTAAGGAAACTTGA+TGG 0.478866 3_2:-64479884 Msa0417330:CDS
CATACCTTAGCAGAAATAGT+AGG 0.479188 3_2:+64481310 None:intergenic
GTACAAAGACTTTGGTCTAT+GGG 0.488645 3_2:+64481643 None:intergenic
AGGAACTAAGTGCGTGTCGC+AGG 0.493989 3_2:-64481404 Msa0417330:CDS
CCCCAGGTGACATCTCCATA+TGG 0.495395 3_2:-64480219 Msa0417330:intron
TTAAATATAACAGATTCTCA+TGG 0.503411 3_2:+64479846 None:intergenic
TTGTAAATGCAAATTGACCT+TGG 0.510774 3_2:+64480166 None:intergenic
GAAGTAAGCGAAGCAACAAA+TGG 0.515284 3_2:-64479268 Msa0417330:CDS
CACCACAGGTACAAAGACTT+TGG 0.516683 3_2:+64481635 None:intergenic
TCAATTTGCATTTACAACTA+CGG 0.519360 3_2:-64480160 Msa0417330:CDS
TAGTAGGAAGTGGGTGACCC+TGG 0.521407 3_2:+64481326 None:intergenic
GATTACCTCTACAAGGGGTA+TGG 0.525321 3_2:-64479033 Msa0417330:three_prime_UTR
TACCTCTACAAGGGGTATGG+TGG 0.526535 3_2:-64479030 Msa0417330:three_prime_UTR
TGGGTGACCCTGGATATTAT+CGG 0.530206 3_2:+64481336 None:intergenic
CAATTCGTGTTCCTGAACTT+GGG 0.533317 3_2:+64481509 None:intergenic
GGATCCAAACACGAATTTGG+TGG 0.533387 3_2:-64481722 None:intergenic
ACTTCCTACTATTTCTGCTA+AGG 0.538663 3_2:-64481314 Msa0417330:intron
ACGCACTTAGTTCCTGAACT+GGG 0.540090 3_2:+64481412 None:intergenic
AAAACTTATAGAAAACAAGT+TGG 0.540899 3_2:+64479110 None:intergenic
ACTGGGGATACTTAACCAAA+TGG 0.541125 3_2:+64481429 None:intergenic
TGGTTCAGTATAATGTCTCT+TGG 0.541189 3_2:-64479235 Msa0417330:CDS
AGGGTGTTGAACTTGAGCTA+AGG 0.542132 3_2:-64479895 Msa0417330:CDS
AGTAGAATAGGAAAAGCAAT+GGG 0.550580 3_2:-64478912 Msa0417330:three_prime_UTR
ATATAACAGATTCTCATGGA+TGG 0.555960 3_2:+64479850 None:intergenic
GACCAAAGTCTTTGTACCTG+TGG 0.558171 3_2:-64481637 Msa0417330:five_prime_UTR
TTTATTCCACAGTCAACCAT+CGG 0.564107 3_2:-64481551 Msa0417330:five_prime_UTR
GTTGGTGGATTACCTCTACA+AGG 0.568563 3_2:-64479040 Msa0417330:three_prime_UTR
TTAGCAGAAATAGTAGGAAG+TGG 0.568794 3_2:+64481316 None:intergenic
ACCTCTACAAGGGGTATGGT+GGG 0.579054 3_2:-64479029 Msa0417330:three_prime_UTR
TAGTAGAATAGGAAAAGCAA+TGG 0.591569 3_2:-64478913 Msa0417330:three_prime_UTR
TGTACTCTTTCTTTCTCTCG+GGG 0.592451 3_2:-64481609 Msa0417330:five_prime_UTR
AACAATGAAAATGTTACCCA+AGG 0.597853 3_2:-64480183 Msa0417330:CDS
TACAAAGACTTTGGTCTATG+GGG 0.602533 3_2:+64481644 None:intergenic
TATTAATCTCCCTCAAACCA+AGG 0.612415 3_2:-64481452 Msa0417330:CDS
GCATTTACAACTACGGAGAG+TGG 0.623113 3_2:-64480153 Msa0417330:CDS
TACGGAGAGTGGTAGCTATG+TGG 0.633734 3_2:-64480142 Msa0417330:CDS
CAGATGTTCAATTAACCACA+TGG 0.633972 3_2:+64478965 None:intergenic
TTGAGGGAGATTAATAAGCG+AGG 0.637007 3_2:+64481459 None:intergenic
TAGCAGAAATAGTAGGAAGT+GGG 0.638507 3_2:+64481317 None:intergenic
TCCCACCATACCCCTTGTAG+AGG 0.640141 3_2:+64479028 None:intergenic
GTTGTTGCCGATAATATCCA+GGG 0.640526 3_2:-64481343 Msa0417330:CDS
CAACAAATGGCAGAGTTGCG+TGG 0.644187 3_2:-64479255 Msa0417330:CDS
GAAAGAGTACAAGACACCAC+AGG 0.658920 3_2:+64481621 None:intergenic
TAGGATTGTCGAAAACAAAG+TGG 0.660052 3_2:+64481575 None:intergenic
ATTCTACTATAAGTAACATG+AGG 0.660930 3_2:+64478927 None:intergenic
ACAAAGACTTTGGTCTATGG+GGG 0.662924 3_2:+64481645 None:intergenic
CGCACTTAGTTCCTGAACTG+GGG 0.674873 3_2:+64481413 None:intergenic
TTGGTGGATTACCTCTACAA+GGG 0.675678 3_2:-64479039 Msa0417330:three_prime_UTR
TGGTGGATTACCTCTACAAG+GGG 0.690786 3_2:-64479038 Msa0417330:three_prime_UTR
CCATAACCGATGGTTGACTG+TGG 0.695847 3_2:+64481545 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGCTTTATTATTTTTTCT+TGG - chr3_2:64479309-64479328 Msa0417330:intron 15.0%
!!! AAAAGTTCAAAACAATTTTA+TGG + chr3_2:64480924-64480943 None:intergenic 15.0%
!!! TTTTCATAAACTATATTAGA+TGG + chr3_2:64480954-64480973 None:intergenic 15.0%
!! TCTTTAAATTTATTCAAAGA+AGG - chr3_2:64481153-64481172 Msa0417330:intron 15.0%
!!! TTTGATCTTTATGCTTTATT+TGG - chr3_2:64479381-64479400 Msa0417330:intron 20.0%
!!! ATTTAAAGTTTCTTCAACTT+AGG - chr3_2:64479430-64479449 Msa0417330:intron 20.0%
!!! GGATTATAAATTTGTTTATG+AGG - chr3_2:64479451-64479470 Msa0417330:intron 20.0%
!! AAACTTAATGGTGTAAAATA+AGG - chr3_2:64479599-64479618 Msa0417330:intron 20.0%
!! AATTCATATGAGTTAAACTA+AGG - chr3_2:64479838-64479857 Msa0417330:intron 20.0%
!! AAAAAAAACTACTACATTAG+TGG + chr3_2:64479887-64479906 None:intergenic 20.0%
!! TAACTCAACTAATACATTTA+TGG - chr3_2:64480141-64480160 Msa0417330:CDS 20.0%
!!! TAATACATTTATGGTTTGTT+TGG - chr3_2:64480150-64480169 Msa0417330:CDS 20.0%
!!! AATACATTTATGGTTTGTTT+GGG - chr3_2:64480151-64480170 Msa0417330:CDS 20.0%
!! TTAAATATAACAGATTCTCA+TGG + chr3_2:64480757-64480776 None:intergenic 20.0%
!! ATCTGTTATATTTAAAGAAC+AGG - chr3_2:64480762-64480781 Msa0417330:intron 20.0%
!! AATTAAGATGTTTATCCAAA+TGG - chr3_2:64481080-64481099 Msa0417330:intron 20.0%
!! ATTAAGATGTTTATCCAAAT+GGG - chr3_2:64481081-64481100 Msa0417330:intron 20.0%
!!! TGAGATCTTTTTATTAAGTT+GGG - chr3_2:64481129-64481148 Msa0417330:intron 20.0%
!! AAATTTATTCAAAGAAGGTT+AGG - chr3_2:64481158-64481177 Msa0417330:intron 20.0%
!! AATTTATTCAAAGAAGGTTA+GGG - chr3_2:64481159-64481178 Msa0417330:intron 20.0%
!!! ATTTTTTTTGCACATTGTAT+AGG - chr3_2:64481294-64481313 Msa0417330:intron 20.0%
!!! TTTTTTTTGCACATTGTATA+GGG - chr3_2:64481295-64481314 Msa0417330:intron 20.0%
!! AAAACTTATAGAAAACAAGT+TGG + chr3_2:64481493-64481512 None:intergenic 20.0%
!!! AACTTGTTTTCTATAAGTTT+TGG - chr3_2:64481492-64481511 Msa0417330:CDS 20.0%
!!! TAGTATTTTTCATGTATCAT+TGG - chr3_2:64481535-64481554 Msa0417330:exon 20.0%
!!! AGTATTTTTCATGTATCATT+GGG - chr3_2:64481536-64481555 Msa0417330:exon 20.0%
!! GTTACATATATTCTGAATTT+AGG - chr3_2:64481595-64481614 Msa0417330:five_prime_UTR 20.0%
!! AATTTGTTTATGAGGCTAAT+AGG - chr3_2:64479459-64479478 Msa0417330:intron 25.0%
! ATTTGTTTATGAGGCTAATA+GGG - chr3_2:64479460-64479479 Msa0417330:intron 25.0%
! ATTCAACGTCAATACAAATT+TGG + chr3_2:64479498-64479517 None:intergenic 25.0%
! TAAAGAACAAGGATGAAATT+TGG + chr3_2:64479580-64479599 None:intergenic 25.0%
! TCCTTGTTCTTTAAACTTAA+TGG - chr3_2:64479587-64479606 Msa0417330:intron 25.0%
! ACCATTAAGTTTAAAGAACA+AGG + chr3_2:64479591-64479610 None:intergenic 25.0%
! AATATGTGGTTAATTACATC+CGG - chr3_2:64479745-64479764 Msa0417330:intron 25.0%
! GGATGGTAAATAGATATATT+AGG - chr3_2:64479769-64479788 Msa0417330:intron 25.0%
! ACAACACATGTAAGAAAATT+CGG + chr3_2:64480020-64480039 None:intergenic 25.0%
! TTGTGAAGATTATTTCCATA+TGG + chr3_2:64480399-64480418 None:intergenic 25.0%
! TCAATTTGCATTTACAACTA+CGG - chr3_2:64480440-64480459 Msa0417330:intron 25.0%
! ATGAATAGCAAAAATTTAGC+AGG - chr3_2:64480492-64480511 Msa0417330:intron 25.0%
! TTGCCTTTGTAATATCTATA+TGG - chr3_2:64480625-64480644 Msa0417330:intron 25.0%
! TGCCTTTGTAATATCTATAT+GGG - chr3_2:64480626-64480645 Msa0417330:intron 25.0%
! ATCCCATATAGATATTACAA+AGG + chr3_2:64480631-64480650 None:intergenic 25.0%
!! GTTTAATGACATAATCGTTT+TGG - chr3_2:64480671-64480690 Msa0417330:intron 25.0%
!!! GATGTTTGATTTCAGTTTTA+GGG - chr3_2:64480807-64480826 Msa0417330:intron 25.0%
! GAAAATAGCTTATAGCTAAT+AGG - chr3_2:64480969-64480988 Msa0417330:intron 25.0%
! CTATAACAGAAGATGAAATA+AGG + chr3_2:64481007-64481026 None:intergenic 25.0%
! TTAAGATGTTTATCCAAATG+GGG - chr3_2:64481082-64481101 Msa0417330:intron 25.0%
!! CTGAGATCTTTTTATTAAGT+TGG - chr3_2:64481128-64481147 Msa0417330:intron 25.0%
!! ATTTTACTTTCTTATAGCAC+TGG - chr3_2:64481461-64481480 Msa0417330:CDS 25.0%
!! GTATTTTTCATGTATCATTG+GGG - chr3_2:64481537-64481556 Msa0417330:exon 25.0%
!! TATTTTTCATGTATCATTGG+GGG - chr3_2:64481538-64481557 Msa0417330:exon 25.0%
!!! TTTTGTTACTTTATTCCATG+TGG - chr3_2:64481620-64481639 Msa0417330:five_prime_UTR 25.0%
! ATTCTACTATAAGTAACATG+AGG + chr3_2:64481676-64481695 None:intergenic 25.0%
!! CATGTTACTTATAGTAGAAT+AGG - chr3_2:64481676-64481695 Msa0417330:five_prime_UTR 25.0%
!! TAAATTTGCTGAGAACAACA+GGG + chr3_2:64479554-64479573 None:intergenic 30.0%
TCATATTGACCAGTTCAAAT+AGG - chr3_2:64479637-64479656 Msa0417330:intron 30.0%
AATTTGGTTATCCTCATTGT+TGG + chr3_2:64479679-64479698 None:intergenic 30.0%
AAGTTGTTGCAGTCTAAATT+TGG + chr3_2:64479695-64479714 None:intergenic 30.0%
TATATCTATTTACCATCCAC+CGG + chr3_2:64479767-64479786 None:intergenic 30.0%
CAACACATGTAAGAAAATTC+GGG + chr3_2:64480019-64480038 None:intergenic 30.0%
!! ATCATTTTTCAGATACGTGT+CGG + chr3_2:64480076-64480095 None:intergenic 30.0%
AAAATGATACACCTAATCAC+AGG - chr3_2:64480088-64480107 Msa0417330:CDS 30.0%
! TGTAGGAAATTCATGAGTTT+TGG + chr3_2:64480347-64480366 None:intergenic 30.0%
AACAATGAAAATGTTACCCA+AGG - chr3_2:64480417-64480436 Msa0417330:intron 30.0%
TGTAAATGCAAATTGACCTT+GGG + chr3_2:64480436-64480455 None:intergenic 30.0%
TTGTAAATGCAAATTGACCT+TGG + chr3_2:64480437-64480456 None:intergenic 30.0%
!! GTTCTTCAATTAGTCTTGAA+TGG - chr3_2:64480514-64480533 Msa0417330:intron 30.0%
!! ATTAGTCTTGAATGGAAAAC+TGG - chr3_2:64480522-64480541 Msa0417330:intron 30.0%
TGCTAAAAAGGAAAAGATAG+AGG - chr3_2:64480572-64480591 Msa0417330:intron 30.0%
!!! GACATAATCGTTTTGGAAAA+TGG - chr3_2:64480678-64480697 Msa0417330:intron 30.0%
!!! TCGTTTTGGAAAATGGTTTA+AGG - chr3_2:64480685-64480704 Msa0417330:intron 30.0%
!!! CGTTTTGGAAAATGGTTTAA+GGG - chr3_2:64480686-64480705 Msa0417330:intron 30.0%
ATATAACAGATTCTCATGGA+TGG + chr3_2:64480753-64480772 None:intergenic 30.0%
!! CGATGTTTGATTTCAGTTTT+AGG - chr3_2:64480806-64480825 Msa0417330:intron 30.0%
GTGAGCTTATCTACTAATAT+AGG - chr3_2:64480849-64480868 Msa0417330:intron 30.0%
TAGTAGAATAGGAAAAGCAA+TGG - chr3_2:64481687-64481706 Msa0417330:five_prime_UTR 30.0%
AGTAGAATAGGAAAAGCAAT+GGG - chr3_2:64481688-64481707 Msa0417330:five_prime_UTR 30.0%
! AAAAATCGATGGACTCAAGT+TGG + chr3_2:64478935-64478954 None:intergenic 35.0%
TACAAAGACTTTGGTCTATG+GGG + chr3_2:64478959-64478978 None:intergenic 35.0%
GTACAAAGACTTTGGTCTAT+GGG + chr3_2:64478960-64478979 None:intergenic 35.0%
CTTGTACTCTTTCTTTCTCT+CGG - chr3_2:64478989-64479008 Msa0417330:three_prime_UTR 35.0%
TTGTACTCTTTCTTTCTCTC+GGG - chr3_2:64478990-64479009 Msa0417330:three_prime_UTR 35.0%
TAGGATTGTCGAAAACAAAG+TGG + chr3_2:64479028-64479047 None:intergenic 35.0%
GGTTGACTGTGGAATAAAAT+AGG + chr3_2:64479047-64479066 None:intergenic 35.0%
TTTATTCCACAGTCAACCAT+CGG - chr3_2:64479049-64479068 Msa0417330:three_prime_UTR 35.0%
TATTAATCTCCCTCAAACCA+AGG - chr3_2:64479148-64479167 Msa0417330:exon 35.0%
CTAAAACGACAACATGTGTT+TGG + chr3_2:64479226-64479245 None:intergenic 35.0%
ATCGGCAACAACATAGTAAT+TGG + chr3_2:64479249-64479268 None:intergenic 35.0%
TAGCAGAAATAGTAGGAAGT+GGG + chr3_2:64479286-64479305 None:intergenic 35.0%
TTAGCAGAAATAGTAGGAAG+TGG + chr3_2:64479287-64479306 None:intergenic 35.0%
!! ACTTCCTACTATTTCTGCTA+AGG - chr3_2:64479286-64479305 Msa0417330:CDS 35.0%
CATACCTTAGCAGAAATAGT+AGG + chr3_2:64479293-64479312 None:intergenic 35.0%
!! CTAAATTTGCTGAGAACAAC+AGG + chr3_2:64479555-64479574 None:intergenic 35.0%
CTGTTGTTCTCAGCAAATTT+AGG - chr3_2:64479553-64479572 Msa0417330:intron 35.0%
!! GACTGCAACAACTTTTTAAG+TGG - chr3_2:64479701-64479720 Msa0417330:intron 35.0%
!!! CAACTTTTTAAGTGGTTGAC+TGG - chr3_2:64479709-64479728 Msa0417330:intron 35.0%
TCGTGGTTAATGAAGTAAGT+TGG + chr3_2:64479814-64479833 None:intergenic 35.0%
ACTCATATGAATTTCAGTCG+TGG + chr3_2:64479831-64479850 None:intergenic 35.0%
AGACTCATCTACGGTAAAAT+TGG + chr3_2:64479930-64479949 None:intergenic 35.0%
AATTTGACACTCCTGTGATT+AGG + chr3_2:64480102-64480121 None:intergenic 35.0%
!! ACATTTATGGTTTGTTTGGG+AGG - chr3_2:64480154-64480173 Msa0417330:CDS 35.0%
!! CATTTATGGTTTGTTTGGGA+GGG - chr3_2:64480155-64480174 Msa0417330:CDS 35.0%
!!! GGAAATTCATGAGTTTTGGA+GGG + chr3_2:64480343-64480362 None:intergenic 35.0%
!! AGGAAATTCATGAGTTTTGG+AGG + chr3_2:64480344-64480363 None:intergenic 35.0%
ACAAGTGCTTACGATATAAG+CGG - chr3_2:64481055-64481074 Msa0417330:intron 35.0%
! TATGTGCCAATGATGATGAT+GGG - chr3_2:64481200-64481219 Msa0417330:intron 35.0%
TGGTTCAGTATAATGTCTCT+TGG - chr3_2:64481365-64481384 Msa0417330:CDS 35.0%
CAGATGTTCAATTAACCACA+TGG + chr3_2:64481638-64481657 None:intergenic 35.0%
ACAAAGACTTTGGTCTATGG+GGG + chr3_2:64478958-64478977 None:intergenic 40.0%
GGTACAAAGACTTTGGTCTA+TGG + chr3_2:64478961-64478980 None:intergenic 40.0%
TGTACTCTTTCTTTCTCTCG+GGG - chr3_2:64478991-64479010 Msa0417330:three_prime_UTR 40.0%
CAATTCGTGTTCCTGAACTT+GGG + chr3_2:64479094-64479113 None:intergenic 40.0%
ACAATTCGTGTTCCTGAACT+TGG + chr3_2:64479095-64479114 None:intergenic 40.0%
TTGAGGGAGATTAATAAGCG+AGG + chr3_2:64479144-64479163 None:intergenic 40.0%
GATACTTAACCAAATGGCCT+TGG + chr3_2:64479168-64479187 None:intergenic 40.0%
ACTGGGGATACTTAACCAAA+TGG + chr3_2:64479174-64479193 None:intergenic 40.0%
TGTTGTTGCCGATAATATCC+AGG - chr3_2:64479256-64479275 Msa0417330:CDS 40.0%
GTTGTTGCCGATAATATCCA+GGG - chr3_2:64479257-64479276 Msa0417330:CDS 40.0%
CCAAGCTTTCCTATTTGAAC+TGG + chr3_2:64479649-64479668 None:intergenic 40.0%
CCAGTTCAAATAGGAAAGCT+TGG - chr3_2:64479646-64479665 Msa0417330:intron 40.0%
TTGGATACAGACCAACAATG+AGG - chr3_2:64479665-64479684 Msa0417330:intron 40.0%
GTTGACGCGGTTTAAATATG+TGG - chr3_2:64479731-64479750 Msa0417330:intron 40.0%
ATGTGGTTAATTACATCCGG+TGG - chr3_2:64479748-64479767 Msa0417330:intron 40.0%
ACACAGCATAGACTCATCTA+CGG + chr3_2:64479939-64479958 None:intergenic 40.0%
TGTGTTGTACGTGTATCGTA+CGG - chr3_2:64480032-64480051 Msa0417330:CDS 40.0%
!!! TCAGATACGTGTCGGTTTTT+GGG + chr3_2:64480068-64480087 None:intergenic 40.0%
!!! TTCAGATACGTGTCGGTTTT+TGG + chr3_2:64480069-64480088 None:intergenic 40.0%
! TTTGTTTGGGAGGGAGATTT+TGG - chr3_2:64480164-64480183 Msa0417330:CDS 40.0%
!!! TTCATGAGTTTTGGAGGGAT+AGG + chr3_2:64480338-64480357 None:intergenic 40.0%
TGGAATCTCTGCCAAAGATT+GGG - chr3_2:64480542-64480561 Msa0417330:intron 40.0%
TTGGGACTCTGTTGCTAAAA+AGG - chr3_2:64480560-64480579 Msa0417330:intron 40.0%
CTTGAGCTAAGGAAACTTGA+TGG - chr3_2:64480716-64480735 Msa0417330:intron 40.0%
GTTTATCCAAATGGGGATCA+TGG - chr3_2:64481089-64481108 Msa0417330:intron 40.0%
TTACATCCATGATCCCCATT+TGG + chr3_2:64481098-64481117 None:intergenic 40.0%
! CTATGTGCCAATGATGATGA+TGG - chr3_2:64481199-64481218 Msa0417330:intron 40.0%
GAAGTAAGCGAAGCAACAAA+TGG - chr3_2:64481332-64481351 Msa0417330:CDS 40.0%
! TGTATCTGAGACGCTACTTT+CGG - chr3_2:64481420-64481439 Msa0417330:CDS 40.0%
TTTCATGTATCATTGGGGGT+TGG - chr3_2:64481542-64481561 Msa0417330:exon 40.0%
!! TTGGTGGATTACCTCTACAA+GGG - chr3_2:64481561-64481580 Msa0417330:five_prime_UTR 40.0%
GTCTATGGGGGAAAAATCGA+TGG + chr3_2:64478946-64478965 None:intergenic 45.0%
GACCAAAGTCTTTGTACCTG+TGG - chr3_2:64478963-64478982 Msa0417330:three_prime_UTR 45.0%
CACCACAGGTACAAAGACTT+TGG + chr3_2:64478968-64478987 None:intergenic 45.0%
! GAAAGAGTACAAGACACCAC+AGG + chr3_2:64478982-64479001 None:intergenic 45.0%
! CAACCATCGGTTATGGCAAA+AGG - chr3_2:64479062-64479081 Msa0417330:three_prime_UTR 45.0%
! AAGCCTTTTGCCATAACCGA+TGG + chr3_2:64479068-64479087 None:intergenic 45.0%
AAAGGCTTCAACCCAAGTTC+AGG - chr3_2:64479080-64479099 Msa0417330:three_prime_UTR 45.0%
! ACCAAATGGCCTTGGTTTGA+GGG + chr3_2:64479160-64479179 None:intergenic 45.0%
! AACCAAATGGCCTTGGTTTG+AGG + chr3_2:64479161-64479180 None:intergenic 45.0%
TGGTTAAGTATCCCCAGTTC+AGG - chr3_2:64479176-64479195 Msa0417330:CDS 45.0%
ACGCACTTAGTTCCTGAACT+GGG + chr3_2:64479191-64479210 None:intergenic 45.0%
TGGGTGACCCTGGATATTAT+CGG + chr3_2:64479267-64479286 None:intergenic 45.0%
GGTTAATTACATCCGGTGGA+TGG - chr3_2:64479752-64479771 Msa0417330:intron 45.0%
TAAACTAAGGTCCTGCACGA+TGG - chr3_2:64479851-64479870 Msa0417330:CDS 45.0%
GTGTTGTACGTGTATCGTAC+GGG - chr3_2:64480033-64480052 Msa0417330:CDS 45.0%
TCCATATGGAGATGTCACCT+GGG + chr3_2:64480385-64480404 None:intergenic 45.0%
TTCCATATGGAGATGTCACC+TGG + chr3_2:64480386-64480405 None:intergenic 45.0%
GCATTTACAACTACGGAGAG+TGG - chr3_2:64480447-64480466 Msa0417330:intron 45.0%
! GTAGCTATGTGGCATGCTTT+TGG - chr3_2:64480469-64480488 Msa0417330:intron 45.0%
CTGGAATCTCTGCCAAAGAT+TGG - chr3_2:64480541-64480560 Msa0417330:intron 45.0%
AGCAACAGAGTCCCAATCTT+TGG + chr3_2:64480556-64480575 None:intergenic 45.0%
!! AGGGTGTTGAACTTGAGCTA+AGG - chr3_2:64480705-64480724 Msa0417330:intron 45.0%
!! TGCCAATGATGATGATGGGT+GGG - chr3_2:64481204-64481223 Msa0417330:intron 45.0%
ATCCCACCCATCATCATCAT+TGG + chr3_2:64481209-64481228 None:intergenic 45.0%
!! GTTGGTGGATTACCTCTACA+AGG - chr3_2:64481560-64481579 Msa0417330:five_prime_UTR 45.0%
!! TGGTGGATTACCTCTACAAG+GGG - chr3_2:64481562-64481581 Msa0417330:five_prime_UTR 45.0%
GATTACCTCTACAAGGGGTA+TGG - chr3_2:64481567-64481586 Msa0417330:five_prime_UTR 45.0%
!! TGGACTCAAGTTGGCGTGTA+CGG + chr3_2:64478926-64478945 None:intergenic 50.0%
CCATAACCGATGGTTGACTG+TGG + chr3_2:64479058-64479077 None:intergenic 50.0%
! CCACAGTCAACCATCGGTTA+TGG - chr3_2:64479055-64479074 Msa0417330:three_prime_UTR 50.0%
TCCCTCAAACCAAGGCCATT+TGG - chr3_2:64479156-64479175 Msa0417330:exon 50.0%
CGCACTTAGTTCCTGAACTG+GGG + chr3_2:64479190-64479209 None:intergenic 50.0%
CACGCACTTAGTTCCTGAAC+TGG + chr3_2:64479192-64479211 None:intergenic 50.0%
AGAACAACAGGGCTTGTGGA+TGG + chr3_2:64479543-64479562 None:intergenic 50.0%
! AAGTGGTTGACTGGTTGACG+CGG - chr3_2:64479718-64479737 Msa0417330:intron 50.0%
TACGTGTATCGTACGGGTGT+CGG - chr3_2:64480039-64480058 Msa0417330:CDS 50.0%
!! TTGGGAGGGAGATTTTGGAG+AGG - chr3_2:64480169-64480188 Msa0417330:CDS 50.0%
GGGCAAAAAGGCAGTCATGT+AGG + chr3_2:64480364-64480383 None:intergenic 50.0%
AGATGTCACCTGGGGCAAAA+AGG + chr3_2:64480376-64480395 None:intergenic 50.0%
CCATATGGAGATGTCACCTG+GGG + chr3_2:64480384-64480403 None:intergenic 50.0%
TACGGAGAGTGGTAGCTATG+TGG - chr3_2:64480458-64480477 Msa0417330:intron 50.0%
!! GTGCCAATGATGATGATGGG+TGG - chr3_2:64481203-64481222 Msa0417330:intron 50.0%
CAACAAATGGCAGAGTTGCG+TGG - chr3_2:64481345-64481364 Msa0417330:CDS 50.0%
GTCTCTTGGCGTATGCGTTT+CGG - chr3_2:64481379-64481398 Msa0417330:CDS 50.0%
CATGTATCATTGGGGGTTGG+TGG - chr3_2:64481545-64481564 Msa0417330:exon 50.0%
! TACCTCTACAAGGGGTATGG+TGG - chr3_2:64481570-64481589 Msa0417330:five_prime_UTR 50.0%
! ACCTCTACAAGGGGTATGGT+GGG - chr3_2:64481571-64481590 Msa0417330:five_prime_UTR 50.0%
!! GGACTCAAGTTGGCGTGTAC+GGG + chr3_2:64478925-64478944 None:intergenic 55.0%
AGGAACTAAGTGCGTGTCGC+AGG - chr3_2:64479196-64479215 Msa0417330:CDS 55.0%
TAGTAGGAAGTGGGTGACCC+TGG + chr3_2:64479277-64479296 None:intergenic 55.0%
GCTGAGAACAACAGGGCTTG+TGG + chr3_2:64479547-64479566 None:intergenic 55.0%
! GTGTTGATGTGCCATCGTGC+AGG + chr3_2:64479865-64479884 None:intergenic 55.0%
!! GGAGGGAGATTTTGGAGAGG+AGG - chr3_2:64480172-64480191 Msa0417330:CDS 55.0%
! CATGACTGCCTTTTTGCCCC+AGG - chr3_2:64480365-64480384 Msa0417330:intron 55.0%
CCCCAGGTGACATCTCCATA+TGG - chr3_2:64480381-64480400 Msa0417330:intron 55.0%
TCCCACCATACCCCTTGTAG+AGG + chr3_2:64481575-64481594 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 64478891 64481731 64478891 ID=Msa0417330;Name=Msa0417330
chr3_2 mRNA 64478891 64481731 64478891 ID=Msa0417330-mRNA-1;Parent=Msa0417330;Name=Msa0417330-mRNA-1;_AED=0.06;_eAED=0.06;_QI=183|1|1|1|1|1|4|271|220
chr3_2 exon 64478891 64479306 64478891 ID=Msa0417330-mRNA-1:exon:14281;Parent=Msa0417330-mRNA-1
chr3_2 exon 64479839 64479915 64479839 ID=Msa0417330-mRNA-1:exon:14280;Parent=Msa0417330-mRNA-1
chr3_2 exon 64480029 64480235 64480029 ID=Msa0417330-mRNA-1:exon:14279;Parent=Msa0417330-mRNA-1
chr3_2 exon 64481315 64481731 64481315 ID=Msa0417330-mRNA-1:exon:14278;Parent=Msa0417330-mRNA-1
chr3_2 five_prime_UTR 64481549 64481731 64481549 ID=Msa0417330-mRNA-1:five_prime_utr;Parent=Msa0417330-mRNA-1
chr3_2 CDS 64481315 64481548 64481315 ID=Msa0417330-mRNA-1:cds;Parent=Msa0417330-mRNA-1
chr3_2 CDS 64480029 64480235 64480029 ID=Msa0417330-mRNA-1:cds;Parent=Msa0417330-mRNA-1
chr3_2 CDS 64479839 64479915 64479839 ID=Msa0417330-mRNA-1:cds;Parent=Msa0417330-mRNA-1
chr3_2 CDS 64479162 64479306 64479162 ID=Msa0417330-mRNA-1:cds;Parent=Msa0417330-mRNA-1
chr3_2 three_prime_UTR 64478891 64479161 64478891 ID=Msa0417330-mRNA-1:three_prime_utr;Parent=Msa0417330-mRNA-1
Gene Sequence

>Msa0417330

ATGGCAAAAGGCTTCAACCCAAGTTCAGGAACACGAATTGTTCTTAGTATTTTATTGTTATGCTTCACCTCGCTTATTAATCTCCCTCAAACCAAGGCCATTTGGTTAAGTATCCCCAGTTCAGGAACTAAGTGCGTGTCGCAGGATATCCAAACACATGTTGTCGTTTTAGCCAATTACTATGTTGTTGCCGATAATATCCAGGGTCACCCACTTCCTACTATTTCTGCTAAGGTGACATCTCCATATGGAAATAATCTTCACAACAATGAAAATGTTACCCAAGGTCAATTTGCATTTACAACTACGGAGAGTGGTAGCTATGTGGCATGCTTTTGGATGAATAGCAAAAATTTAGCAGGTTCTTCAATTAGTCTTGAATGGAAAACTGGAATCTCTGCCAAAGATTGGGACTCTGTTGCTAAAAAGGAAAAGATAGAGGGTGTTGAACTTGAGCTAAGGAAACTTGATGGAGCTGTGCAAGCCATCCATGAGAATCTGTTATATTTAAAGAACAGGGAAGCAGAGATGAGAGAAGTAAGCGAAGCAACAAATGGCAGAGTTGCGTGGTTCAGTATAATGTCTCTTGGCGTATGCGTTTCGGTTTCAGTGTTGCAGCTGTTGTATCTGAGACGCTACTTTCGGAAGAAGAAGCTCATATAG

Protein sequence

>Msa0417330

MAKGFNPSSGTRIVLSILLLCFTSLINLPQTKAIWLSIPSSGTKCVSQDIQTHVVVLANYYVVADNIQGHPLPTISAKVTSPYGNNLHNNENVTQGQFAFTTTESGSYVACFWMNSKNLAGSSISLEWKTGISAKDWDSVAKKEKIEGVELELRKLDGAVQAIHENLLYLKNREAEMREVSEATNGRVAWFSIMSLGVCVSVSVLQLLYLRRYFRKKKLI*