Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057790 | KEH16686.1 | 91.597 | 119 | 9 | 1 | 2 | 120 | 127 | 244 | 1.90e-70 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057790 | A0A072THJ7 | 91.597 | 119 | 9 | 1 | 2 | 120 | 127 | 244 | 9.06e-71 | 221 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1016320 | Msa1057790 | 0.847665 | 1.001695e-59 | -8.615850e-47 |
| Msa1057780 | Msa1057790 | 0.843365 | 1.465807e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057790 | MtrunA17_Chr7g0231021 | 92.373 | 118 | 8 | 1 | 3 | 120 | 116 | 232 | 2.13e-74 | 220 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 17 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAACATTATTATTTGATT+TGG | 0.212608 | 7_2:-40459376 | None:intergenic |
| TTAACATTATTATTTGATTT+GGG | 0.223719 | 7_2:-40459375 | None:intergenic |
| ATAGGGTTTGTTATAAATTA+AGG | 0.230557 | 7_2:+40459274 | Msa1057790:CDS |
| GACAAACGTGCCGAGAAATT+TGG | 0.242542 | 7_2:-40459177 | None:intergenic |
| GATCTTTAAAAGTTAGGTAT+AGG | 0.293993 | 7_2:+40459256 | Msa1057790:CDS |
| AGCGTGACATAAAGTTTAAT+TGG | 0.323204 | 7_2:+40459151 | Msa1057790:CDS |
| GTCGTCGATCTTTAAAAGTT+AGG | 0.340706 | 7_2:+40459250 | Msa1057790:CDS |
| AGATTCAGTCTTGGTACGTT+TGG | 0.383413 | 7_2:+40459113 | Msa1057790:CDS |
| ATCTTTAAAAGTTAGGTATA+GGG | 0.395637 | 7_2:+40459257 | Msa1057790:CDS |
| TTTAAAGATCGACGACAATC+TGG | 0.405655 | 7_2:-40459243 | None:intergenic |
| AGGAAGAAATCTATTAAACT+TGG | 0.468019 | 7_2:+40459294 | Msa1057790:CDS |
| AAAATTTGAAGATTCAGTCT+TGG | 0.484593 | 7_2:+40459104 | Msa1057790:CDS |
| TAATTGGTTTCCAAATTTCT+CGG | 0.494182 | 7_2:+40459167 | Msa1057790:CDS |
| TAACATTATTATTTGATTTG+GGG | 0.535494 | 7_2:-40459374 | None:intergenic |
| TCAGTGTCCACCTCTACCAT+AGG | 0.555905 | 7_2:-40459333 | None:intergenic |
| TCTAGCGAATTCGAACGCCT+TGG | 0.591653 | 7_2:+40459203 | Msa1057790:CDS |
| AGCATCTATAGTCACAACCA+AGG | 0.708480 | 7_2:-40459220 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTATTTAAATGTAAAAT+TGG | - | chr7_2:40457941-40457960 | None:intergenic | 10.0% |
| !!! | TTAACATTATTATTTGATTT+GGG | - | chr7_2:40459378-40459397 | None:intergenic | 10.0% |
| !! | ATTAACATTATTATTTGATT+TGG | - | chr7_2:40459379-40459398 | None:intergenic | 10.0% |
| !! | TACTTATTTAAATGTAAAAT+TGG | - | chr7_2:40457941-40457960 | None:intergenic | 10.0% |
| !!! | TTAACATTATTATTTGATTT+GGG | - | chr7_2:40459378-40459397 | None:intergenic | 10.0% |
| !! | ATTAACATTATTATTTGATT+TGG | - | chr7_2:40459379-40459398 | None:intergenic | 10.0% |
| !! | TATTTAAATGTAAAATTGGA+GGG | - | chr7_2:40457937-40457956 | None:intergenic | 15.0% |
| !! | TTATTTAAATGTAAAATTGG+AGG | - | chr7_2:40457938-40457957 | None:intergenic | 15.0% |
| !! | AATAAGATAAAATTTAGTCT+TGG | - | chr7_2:40458049-40458068 | None:intergenic | 15.0% |
| !!! | AAATCTTTTATTTTAAGAAG+GGG | - | chr7_2:40458600-40458619 | None:intergenic | 15.0% |
| !!! | GAAATCTTTTATTTTAAGAA+GGG | - | chr7_2:40458601-40458620 | None:intergenic | 15.0% |
| !!! | ATTTTCCAATTTTAATTTAG+GGG | - | chr7_2:40458624-40458643 | None:intergenic | 15.0% |
| !!! | CATTTTCCAATTTTAATTTA+GGG | - | chr7_2:40458625-40458644 | None:intergenic | 15.0% |
| !!! | ACATTTTCCAATTTTAATTT+AGG | - | chr7_2:40458626-40458645 | None:intergenic | 15.0% |
| !!! | ATTTTTTTATACGAATACAT+GGG | - | chr7_2:40458730-40458749 | None:intergenic | 15.0% |
| !!! | TATTTTTTTATACGAATACA+TGG | - | chr7_2:40458731-40458750 | None:intergenic | 15.0% |
| !!! | AACTATAATTTTCTTCATAT+TGG | + | chr7_2:40458994-40459013 | Msa1057790:intron | 15.0% |
| !!! | ACTATAATTTTCTTCATATT+GGG | + | chr7_2:40458995-40459014 | Msa1057790:intron | 15.0% |
| !! | TTATCTATTTAAAAATCCTA+TGG | + | chr7_2:40459317-40459336 | Msa1057790:CDS | 15.0% |
| !!! | TAACATTATTATTTGATTTG+GGG | - | chr7_2:40459377-40459396 | None:intergenic | 15.0% |
| !! | TATTTAAATGTAAAATTGGA+GGG | - | chr7_2:40457937-40457956 | None:intergenic | 15.0% |
| !! | TTATTTAAATGTAAAATTGG+AGG | - | chr7_2:40457938-40457957 | None:intergenic | 15.0% |
| !! | AATAAGATAAAATTTAGTCT+TGG | - | chr7_2:40458049-40458068 | None:intergenic | 15.0% |
| !!! | AAATCTTTTATTTTAAGAAG+GGG | - | chr7_2:40458600-40458619 | None:intergenic | 15.0% |
| !!! | GAAATCTTTTATTTTAAGAA+GGG | - | chr7_2:40458601-40458620 | None:intergenic | 15.0% |
| !!! | ATTTTCCAATTTTAATTTAG+GGG | - | chr7_2:40458624-40458643 | None:intergenic | 15.0% |
| !!! | CATTTTCCAATTTTAATTTA+GGG | - | chr7_2:40458625-40458644 | None:intergenic | 15.0% |
| !!! | ACATTTTCCAATTTTAATTT+AGG | - | chr7_2:40458626-40458645 | None:intergenic | 15.0% |
| !!! | ATTTTTTTATACGAATACAT+GGG | - | chr7_2:40458730-40458749 | None:intergenic | 15.0% |
| !!! | TATTTTTTTATACGAATACA+TGG | - | chr7_2:40458731-40458750 | None:intergenic | 15.0% |
| !!! | AACTATAATTTTCTTCATAT+TGG | + | chr7_2:40458994-40459013 | Msa1057790:intron | 15.0% |
| !!! | ACTATAATTTTCTTCATATT+GGG | + | chr7_2:40458995-40459014 | Msa1057790:intron | 15.0% |
| !! | TTATCTATTTAAAAATCCTA+TGG | + | chr7_2:40459317-40459336 | Msa1057790:CDS | 15.0% |
| !!! | TAACATTATTATTTGATTTG+GGG | - | chr7_2:40459377-40459396 | None:intergenic | 15.0% |
| !!! | AGTAATTAGTATTTTGTATG+AGG | - | chr7_2:40458082-40458101 | None:intergenic | 20.0% |
| !!! | CAAAAATTTGCTATTCAATT+CGG | + | chr7_2:40458473-40458492 | Msa1057790:intron | 20.0% |
| !!! | GGAAATCTTTTATTTTAAGA+AGG | - | chr7_2:40458602-40458621 | None:intergenic | 20.0% |
| !!! | TTTTCCAATTTTAATTTAGG+GGG | - | chr7_2:40458623-40458642 | None:intergenic | 20.0% |
| !! | ATAAAAAAATACCAATCCAA+CGG | + | chr7_2:40458740-40458759 | Msa1057790:intron | 20.0% |
| !!! | ATCTTTAAAAGTTAGGTATA+GGG | + | chr7_2:40459257-40459276 | Msa1057790:CDS | 20.0% |
| !!! | ATAGGGTTTGTTATAAATTA+AGG | + | chr7_2:40459274-40459293 | Msa1057790:CDS | 20.0% |
| !!! | AGTAATTAGTATTTTGTATG+AGG | - | chr7_2:40458082-40458101 | None:intergenic | 20.0% |
| !!! | CAAAAATTTGCTATTCAATT+CGG | + | chr7_2:40458473-40458492 | Msa1057790:intron | 20.0% |
| !!! | GGAAATCTTTTATTTTAAGA+AGG | - | chr7_2:40458602-40458621 | None:intergenic | 20.0% |
| !!! | TTTTCCAATTTTAATTTAGG+GGG | - | chr7_2:40458623-40458642 | None:intergenic | 20.0% |
| !! | ATAAAAAAATACCAATCCAA+CGG | + | chr7_2:40458740-40458759 | Msa1057790:intron | 20.0% |
| !!! | ATCTTTAAAAGTTAGGTATA+GGG | + | chr7_2:40459257-40459276 | Msa1057790:CDS | 20.0% |
| !!! | ATAGGGTTTGTTATAAATTA+AGG | + | chr7_2:40459274-40459293 | Msa1057790:CDS | 20.0% |
| ! | TTAGTTTAATCCAAGACATT+AGG | + | chr7_2:40457700-40457719 | Msa1057790:intron | 25.0% |
| ! | TAGTTTAATCCAAGACATTA+GGG | + | chr7_2:40457701-40457720 | Msa1057790:intron | 25.0% |
| !! | TAGGGTTCTATTTAAGATAA+AGG | + | chr7_2:40457719-40457738 | Msa1057790:intron | 25.0% |
| !! | AGGGTTCTATTTAAGATAAA+GGG | + | chr7_2:40457720-40457739 | Msa1057790:intron | 25.0% |
| ! | TGTTAAACATTTGTGATCAT+AGG | + | chr7_2:40457778-40457797 | Msa1057790:intron | 25.0% |
| !!! | TGTTCTTGTTTTGTAATTTG+AGG | - | chr7_2:40457827-40457846 | None:intergenic | 25.0% |
| ! | TTACAAAACAAGAACATACA+TGG | + | chr7_2:40457831-40457850 | Msa1057790:intron | 25.0% |
| !!! | AGATAAAATTTAGTCTTGGA+GGG | - | chr7_2:40458045-40458064 | None:intergenic | 25.0% |
| !!! | AAGATAAAATTTAGTCTTGG+AGG | - | chr7_2:40458046-40458065 | None:intergenic | 25.0% |
| ! | TGTTTCATCTACATATGAAT+AGG | - | chr7_2:40458267-40458286 | None:intergenic | 25.0% |
| !! | CGAATTGAATAGCAAATTTT+TGG | - | chr7_2:40458475-40458494 | None:intergenic | 25.0% |
| ! | ATTTCCCCCTAAATTAAAAT+TGG | + | chr7_2:40458616-40458635 | Msa1057790:intron | 25.0% |
| !! | AATCTCGTGATTCTTTTTAT+CGG | - | chr7_2:40458657-40458676 | None:intergenic | 25.0% |
| !!! | TGTAAATTTTAATCAGCTAG+CGG | - | chr7_2:40458818-40458837 | None:intergenic | 25.0% |
| ! | TATTTCTCTACTGAAAAGTA+TGG | - | chr7_2:40458921-40458940 | None:intergenic | 25.0% |
| !! | AGACTGAATCTTCAAATTTT+TGG | - | chr7_2:40459104-40459123 | None:intergenic | 25.0% |
| ! | AAAATTTGAAGATTCAGTCT+TGG | + | chr7_2:40459104-40459123 | Msa1057790:CDS | 25.0% |
| !! | TAATTGGTTTCCAAATTTCT+CGG | + | chr7_2:40459167-40459186 | Msa1057790:CDS | 25.0% |
| !! | GATCTTTAAAAGTTAGGTAT+AGG | + | chr7_2:40459256-40459275 | Msa1057790:CDS | 25.0% |
| ! | AGGAAGAAATCTATTAAACT+TGG | + | chr7_2:40459294-40459313 | Msa1057790:CDS | 25.0% |
| ! | ATTTAAAAATCCTATGGTAG+AGG | + | chr7_2:40459323-40459342 | Msa1057790:CDS | 25.0% |
| ! | TTAGTTTAATCCAAGACATT+AGG | + | chr7_2:40457700-40457719 | Msa1057790:intron | 25.0% |
| ! | TAGTTTAATCCAAGACATTA+GGG | + | chr7_2:40457701-40457720 | Msa1057790:intron | 25.0% |
| !! | TAGGGTTCTATTTAAGATAA+AGG | + | chr7_2:40457719-40457738 | Msa1057790:intron | 25.0% |
| !! | AGGGTTCTATTTAAGATAAA+GGG | + | chr7_2:40457720-40457739 | Msa1057790:intron | 25.0% |
| ! | TGTTAAACATTTGTGATCAT+AGG | + | chr7_2:40457778-40457797 | Msa1057790:intron | 25.0% |
| !!! | TGTTCTTGTTTTGTAATTTG+AGG | - | chr7_2:40457827-40457846 | None:intergenic | 25.0% |
| ! | TTACAAAACAAGAACATACA+TGG | + | chr7_2:40457831-40457850 | Msa1057790:intron | 25.0% |
| !!! | AGATAAAATTTAGTCTTGGA+GGG | - | chr7_2:40458045-40458064 | None:intergenic | 25.0% |
| !!! | AAGATAAAATTTAGTCTTGG+AGG | - | chr7_2:40458046-40458065 | None:intergenic | 25.0% |
| ! | TGTTTCATCTACATATGAAT+AGG | - | chr7_2:40458267-40458286 | None:intergenic | 25.0% |
| !! | CGAATTGAATAGCAAATTTT+TGG | - | chr7_2:40458475-40458494 | None:intergenic | 25.0% |
| ! | ATTTCCCCCTAAATTAAAAT+TGG | + | chr7_2:40458616-40458635 | Msa1057790:intron | 25.0% |
| !! | AATCTCGTGATTCTTTTTAT+CGG | - | chr7_2:40458657-40458676 | None:intergenic | 25.0% |
| !!! | TGTAAATTTTAATCAGCTAG+CGG | - | chr7_2:40458818-40458837 | None:intergenic | 25.0% |
| ! | TATTTCTCTACTGAAAAGTA+TGG | - | chr7_2:40458921-40458940 | None:intergenic | 25.0% |
| !! | AGACTGAATCTTCAAATTTT+TGG | - | chr7_2:40459104-40459123 | None:intergenic | 25.0% |
| ! | AAAATTTGAAGATTCAGTCT+TGG | + | chr7_2:40459104-40459123 | Msa1057790:CDS | 25.0% |
| !! | TAATTGGTTTCCAAATTTCT+CGG | + | chr7_2:40459167-40459186 | Msa1057790:CDS | 25.0% |
| !! | GATCTTTAAAAGTTAGGTAT+AGG | + | chr7_2:40459256-40459275 | Msa1057790:CDS | 25.0% |
| ! | AGGAAGAAATCTATTAAACT+TGG | + | chr7_2:40459294-40459313 | Msa1057790:CDS | 25.0% |
| ! | ATTTAAAAATCCTATGGTAG+AGG | + | chr7_2:40459323-40459342 | Msa1057790:CDS | 25.0% |
| TAAATAGAACCCTAATGTCT+TGG | - | chr7_2:40457713-40457732 | None:intergenic | 30.0% | |
| ! | GGGTTCTATTTAAGATAAAG+GGG | + | chr7_2:40457721-40457740 | Msa1057790:intron | 30.0% |
| ATAGACCAAGACTAATTTCT+TGG | - | chr7_2:40457755-40457774 | None:intergenic | 30.0% | |
| !! | GATAAAATTTAGTCTTGGAG+GGG | - | chr7_2:40458044-40458063 | None:intergenic | 30.0% |
| !! | TTTTGTTGCTTGTGAATGTT+TGG | - | chr7_2:40458366-40458385 | None:intergenic | 30.0% |
| ATCTACTTGTAGTAGATTAG+AGG | + | chr7_2:40458514-40458533 | Msa1057790:intron | 30.0% | |
| ATATAAGAGAAACCGTAGTT+GGG | - | chr7_2:40458547-40458566 | None:intergenic | 30.0% | |
| TATATAAGAGAAACCGTAGT+TGG | - | chr7_2:40458548-40458567 | None:intergenic | 30.0% | |
| ! | ATCTCGTGATTCTTTTTATC+GGG | - | chr7_2:40458656-40458675 | None:intergenic | 30.0% |
| ! | TAATTTTCTTCATATTGGGC+TGG | + | chr7_2:40458999-40459018 | Msa1057790:intron | 30.0% |
| AGCGTGACATAAAGTTTAAT+TGG | + | chr7_2:40459151-40459170 | Msa1057790:CDS | 30.0% | |
| TAAATAGAACCCTAATGTCT+TGG | - | chr7_2:40457713-40457732 | None:intergenic | 30.0% | |
| ! | GGGTTCTATTTAAGATAAAG+GGG | + | chr7_2:40457721-40457740 | Msa1057790:intron | 30.0% |
| ATAGACCAAGACTAATTTCT+TGG | - | chr7_2:40457755-40457774 | None:intergenic | 30.0% | |
| !! | GATAAAATTTAGTCTTGGAG+GGG | - | chr7_2:40458044-40458063 | None:intergenic | 30.0% |
| !! | TTTTGTTGCTTGTGAATGTT+TGG | - | chr7_2:40458366-40458385 | None:intergenic | 30.0% |
| ATCTACTTGTAGTAGATTAG+AGG | + | chr7_2:40458514-40458533 | Msa1057790:intron | 30.0% | |
| ATATAAGAGAAACCGTAGTT+GGG | - | chr7_2:40458547-40458566 | None:intergenic | 30.0% | |
| TATATAAGAGAAACCGTAGT+TGG | - | chr7_2:40458548-40458567 | None:intergenic | 30.0% | |
| ! | ATCTCGTGATTCTTTTTATC+GGG | - | chr7_2:40458656-40458675 | None:intergenic | 30.0% |
| ! | TAATTTTCTTCATATTGGGC+TGG | + | chr7_2:40458999-40459018 | Msa1057790:intron | 30.0% |
| AGCGTGACATAAAGTTTAAT+TGG | + | chr7_2:40459151-40459170 | Msa1057790:CDS | 30.0% | |
| ! | TTTAAGATAAAGGGGACCTT+TGG | + | chr7_2:40457729-40457748 | Msa1057790:intron | 35.0% |
| AAGACTAATTTCTTGGCCAA+AGG | - | chr7_2:40457748-40457767 | None:intergenic | 35.0% | |
| ! | TTTGGCCAAGAAATTAGTCT+TGG | + | chr7_2:40457747-40457766 | Msa1057790:intron | 35.0% |
| TAGATAGATGACGAGCTATT+AGG | - | chr7_2:40457868-40457887 | None:intergenic | 35.0% | |
| !! | ATTAATTAAGGGCGCTTCTA+CGG | + | chr7_2:40457960-40457979 | Msa1057790:intron | 35.0% |
| !!! | AGTCAGGAAACTGACTTTTT+TGG | + | chr7_2:40457986-40458005 | Msa1057790:intron | 35.0% |
| ! | CATGTTCTTTAGTTCGATTG+TGG | - | chr7_2:40458430-40458449 | None:intergenic | 35.0% |
| TATAAGAGAAACCGTAGTTG+GGG | - | chr7_2:40458546-40458565 | None:intergenic | 35.0% | |
| ATGGTGCAAATTAACCATGT+GGG | + | chr7_2:40458682-40458701 | Msa1057790:intron | 35.0% | |
| ATACATGGGTGCTTGAAAAA+AGG | - | chr7_2:40458716-40458735 | None:intergenic | 35.0% | |
| AGCGACACAATTAATTCTGA+AGG | - | chr7_2:40458785-40458804 | None:intergenic | 35.0% | |
| TTTAAAGATCGACGACAATC+TGG | - | chr7_2:40459246-40459265 | None:intergenic | 35.0% | |
| ! | GTCGTCGATCTTTAAAAGTT+AGG | + | chr7_2:40459250-40459269 | Msa1057790:CDS | 35.0% |
| TAAAAATCCTATGGTAGAGG+TGG | + | chr7_2:40459326-40459345 | Msa1057790:CDS | 35.0% | |
| ! | TTTAAGATAAAGGGGACCTT+TGG | + | chr7_2:40457729-40457748 | Msa1057790:intron | 35.0% |
| AAGACTAATTTCTTGGCCAA+AGG | - | chr7_2:40457748-40457767 | None:intergenic | 35.0% | |
| ! | TTTGGCCAAGAAATTAGTCT+TGG | + | chr7_2:40457747-40457766 | Msa1057790:intron | 35.0% |
| TAGATAGATGACGAGCTATT+AGG | - | chr7_2:40457868-40457887 | None:intergenic | 35.0% | |
| !! | ATTAATTAAGGGCGCTTCTA+CGG | + | chr7_2:40457960-40457979 | Msa1057790:intron | 35.0% |
| !!! | AGTCAGGAAACTGACTTTTT+TGG | + | chr7_2:40457986-40458005 | Msa1057790:intron | 35.0% |
| ! | CATGTTCTTTAGTTCGATTG+TGG | - | chr7_2:40458430-40458449 | None:intergenic | 35.0% |
| TATAAGAGAAACCGTAGTTG+GGG | - | chr7_2:40458546-40458565 | None:intergenic | 35.0% | |
| ATGGTGCAAATTAACCATGT+GGG | + | chr7_2:40458682-40458701 | Msa1057790:intron | 35.0% | |
| ATACATGGGTGCTTGAAAAA+AGG | - | chr7_2:40458716-40458735 | None:intergenic | 35.0% | |
| AGCGACACAATTAATTCTGA+AGG | - | chr7_2:40458785-40458804 | None:intergenic | 35.0% | |
| TTTAAAGATCGACGACAATC+TGG | - | chr7_2:40459246-40459265 | None:intergenic | 35.0% | |
| ! | GTCGTCGATCTTTAAAAGTT+AGG | + | chr7_2:40459250-40459269 | Msa1057790:CDS | 35.0% |
| TAAAAATCCTATGGTAGAGG+TGG | + | chr7_2:40459326-40459345 | Msa1057790:CDS | 35.0% | |
| CTCCATCTTCATCTGCATAA+GGG | + | chr7_2:40458193-40458212 | Msa1057790:intron | 40.0% | |
| TCCATCTTCATCTGCATAAG+GGG | + | chr7_2:40458194-40458213 | Msa1057790:intron | 40.0% | |
| GCTTGTGAATGTTTGGTTGT+TGG | - | chr7_2:40458359-40458378 | None:intergenic | 40.0% | |
| AGAATCACGAGATTTCACGA+TGG | + | chr7_2:40458663-40458682 | Msa1057790:intron | 40.0% | |
| GATGGTGCAAATTAACCATG+TGG | + | chr7_2:40458681-40458700 | Msa1057790:intron | 40.0% | |
| AGATTCAGTCTTGGTACGTT+TGG | + | chr7_2:40459113-40459132 | Msa1057790:CDS | 40.0% | |
| AGCATCTATAGTCACAACCA+AGG | - | chr7_2:40459223-40459242 | None:intergenic | 40.0% | |
| CTCCATCTTCATCTGCATAA+GGG | + | chr7_2:40458193-40458212 | Msa1057790:intron | 40.0% | |
| TCCATCTTCATCTGCATAAG+GGG | + | chr7_2:40458194-40458213 | Msa1057790:intron | 40.0% | |
| GCTTGTGAATGTTTGGTTGT+TGG | - | chr7_2:40458359-40458378 | None:intergenic | 40.0% | |
| AGAATCACGAGATTTCACGA+TGG | + | chr7_2:40458663-40458682 | Msa1057790:intron | 40.0% | |
| GATGGTGCAAATTAACCATG+TGG | + | chr7_2:40458681-40458700 | Msa1057790:intron | 40.0% | |
| AGATTCAGTCTTGGTACGTT+TGG | + | chr7_2:40459113-40459132 | Msa1057790:CDS | 40.0% | |
| AGCATCTATAGTCACAACCA+AGG | - | chr7_2:40459223-40459242 | None:intergenic | 40.0% | |
| CCTTATGCAGATGAAGATGG+AGG | - | chr7_2:40458195-40458214 | None:intergenic | 45.0% | |
| CCTCCATCTTCATCTGCATA+AGG | + | chr7_2:40458192-40458211 | Msa1057790:intron | 45.0% | |
| TCCCCTTATGCAGATGAAGA+TGG | - | chr7_2:40458198-40458217 | None:intergenic | 45.0% | |
| !! | TTCAATTCGGTGCAACACTC+AGG | + | chr7_2:40458486-40458505 | Msa1057790:intron | 45.0% |
| !! | TCAATTCGGTGCAACACTCA+GGG | + | chr7_2:40458487-40458506 | Msa1057790:intron | 45.0% |
| GGGTGCTTGAAAAAAGGAAG+TGG | - | chr7_2:40458710-40458729 | None:intergenic | 45.0% | |
| ACATCTAGCAACCGTTGGAT+TGG | - | chr7_2:40458754-40458773 | None:intergenic | 45.0% | |
| TCCAACGGTTGCTAGATGTT+CGG | + | chr7_2:40458755-40458774 | Msa1057790:intron | 45.0% | |
| GACAAACGTGCCGAGAAATT+TGG | - | chr7_2:40459180-40459199 | None:intergenic | 45.0% | |
| CCTTATGCAGATGAAGATGG+AGG | - | chr7_2:40458195-40458214 | None:intergenic | 45.0% | |
| CCTCCATCTTCATCTGCATA+AGG | + | chr7_2:40458192-40458211 | Msa1057790:intron | 45.0% | |
| TCCCCTTATGCAGATGAAGA+TGG | - | chr7_2:40458198-40458217 | None:intergenic | 45.0% | |
| !! | TTCAATTCGGTGCAACACTC+AGG | + | chr7_2:40458486-40458505 | Msa1057790:intron | 45.0% |
| !! | TCAATTCGGTGCAACACTCA+GGG | + | chr7_2:40458487-40458506 | Msa1057790:intron | 45.0% |
| GGGTGCTTGAAAAAAGGAAG+TGG | - | chr7_2:40458710-40458729 | None:intergenic | 45.0% | |
| ACATCTAGCAACCGTTGGAT+TGG | - | chr7_2:40458754-40458773 | None:intergenic | 45.0% | |
| TCCAACGGTTGCTAGATGTT+CGG | + | chr7_2:40458755-40458774 | Msa1057790:intron | 45.0% | |
| GACAAACGTGCCGAGAAATT+TGG | - | chr7_2:40459180-40459199 | None:intergenic | 45.0% | |
| !! | ATTTAAATAAGTATTAATTA+AGG | + | chr7_2:40457948-40457967 | Msa1057790:intron | 5.0% |
| !! | TTTAAATAAGTATTAATTAA+GGG | + | chr7_2:40457949-40457968 | Msa1057790:intron | 5.0% |
| !!! | AATATATTTAAGATAAAATT+TGG | + | chr7_2:40458884-40458903 | Msa1057790:intron | 5.0% |
| !! | ATTTAAATAAGTATTAATTA+AGG | + | chr7_2:40457948-40457967 | Msa1057790:intron | 5.0% |
| !! | TTTAAATAAGTATTAATTAA+GGG | + | chr7_2:40457949-40457968 | Msa1057790:intron | 5.0% |
| !!! | AATATATTTAAGATAAAATT+TGG | + | chr7_2:40458884-40458903 | Msa1057790:intron | 5.0% |
| !! | AGATGGAGGCACTGAAGAGA+GGG | - | chr7_2:40458181-40458200 | None:intergenic | 50.0% |
| !! | AAGATGGAGGCACTGAAGAG+AGG | - | chr7_2:40458182-40458201 | None:intergenic | 50.0% |
| AAAAGGAAGTGGTGCCCACA+TGG | - | chr7_2:40458699-40458718 | None:intergenic | 50.0% | |
| CCAACGGTTGCTAGATGTTC+GGG | + | chr7_2:40458756-40458775 | Msa1057790:intron | 50.0% | |
| TCTAGCGAATTCGAACGCCT+TGG | + | chr7_2:40459203-40459222 | Msa1057790:CDS | 50.0% | |
| TCAGTGTCCACCTCTACCAT+AGG | - | chr7_2:40459336-40459355 | None:intergenic | 50.0% | |
| !! | AGATGGAGGCACTGAAGAGA+GGG | - | chr7_2:40458181-40458200 | None:intergenic | 50.0% |
| !! | AAGATGGAGGCACTGAAGAG+AGG | - | chr7_2:40458182-40458201 | None:intergenic | 50.0% |
| AAAAGGAAGTGGTGCCCACA+TGG | - | chr7_2:40458699-40458718 | None:intergenic | 50.0% | |
| CCAACGGTTGCTAGATGTTC+GGG | + | chr7_2:40458756-40458775 | Msa1057790:intron | 50.0% | |
| TCTAGCGAATTCGAACGCCT+TGG | + | chr7_2:40459203-40459222 | Msa1057790:CDS | 50.0% | |
| TCAGTGTCCACCTCTACCAT+AGG | - | chr7_2:40459336-40459355 | None:intergenic | 50.0% | |
| !! | GATGGAGGCACTGAAGAGAG+GGG | - | chr7_2:40458180-40458199 | None:intergenic | 55.0% |
| ! | TTCGGTGCAACACTCAGGGA+CGG | + | chr7_2:40458491-40458510 | Msa1057790:intron | 55.0% |
| AGAGGCAACTGCCCCAACTA+CGG | + | chr7_2:40458532-40458551 | Msa1057790:intron | 55.0% | |
| CCCGAACATCTAGCAACCGT+TGG | - | chr7_2:40458759-40458778 | None:intergenic | 55.0% | |
| !! | GATGGAGGCACTGAAGAGAG+GGG | - | chr7_2:40458180-40458199 | None:intergenic | 55.0% |
| ! | TTCGGTGCAACACTCAGGGA+CGG | + | chr7_2:40458491-40458510 | Msa1057790:intron | 55.0% |
| AGAGGCAACTGCCCCAACTA+CGG | + | chr7_2:40458532-40458551 | Msa1057790:intron | 55.0% | |
| CCCGAACATCTAGCAACCGT+TGG | - | chr7_2:40458759-40458778 | None:intergenic | 55.0% | |
| GGCGCTTCTACGGTGCAGTC+AGG | + | chr7_2:40457970-40457989 | Msa1057790:intron | 65.0% | |
| GGCGCTTCTACGGTGCAGTC+AGG | + | chr7_2:40457970-40457989 | Msa1057790:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 40457694 | 40459401 | 40457694 | ID=Msa1057790;Name=Msa1057790 |
| chr7_2 | mRNA | 40457694 | 40459401 | 40457694 | ID=Msa1057790-mRNA-1;Parent=Msa1057790;Name=Msa1057790-mRNA-1;_AED=0.43;_eAED=0.44;_QI=0|0|0|0.5|1|1|2|0|120 |
| chr7_2 | exon | 40457694 | 40457698 | 40457694 | ID=Msa1057790-mRNA-1:exon:7459;Parent=Msa1057790-mRNA-1 |
| chr7_2 | exon | 40459044 | 40459401 | 40459044 | ID=Msa1057790-mRNA-1:exon:7460;Parent=Msa1057790-mRNA-1 |
| chr7_2 | CDS | 40457694 | 40457698 | 40457694 | ID=Msa1057790-mRNA-1:cds;Parent=Msa1057790-mRNA-1 |
| chr7_2 | CDS | 40459044 | 40459401 | 40459044 | ID=Msa1057790-mRNA-1:cds;Parent=Msa1057790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
