AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1060120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1060120 MtrunA17_Chr7g0237441 97.931 580 12 0 1 580 1 580 0.0 1179
Msa1060120 MtrunA17_Chr7g0237491 88.621 580 66 0 1 580 1 580 0.0 1071
Msa1060120 MtrunA17_Chr7g0238351 86.919 581 75 1 1 580 1 581 0.0 1053
Msa1060120 MtrunA17_Chr7g0238941 70.719 584 161 5 1 580 1 578 0.0 861
Msa1060120 MtrunA17_Chr4g0031901 70.312 576 156 6 1 568 5 573 0.0 842
Msa1060120 MtrunA17_Chr7g0238981 72.727 550 149 1 31 580 45 593 0.0 833
Msa1060120 MtrunA17_Chr4g0005921 57.549 563 225 4 18 580 9 557 0.0 664
Msa1060120 MtrunA17_Chr5g0429511 54.991 571 238 8 11 580 6 558 0.0 658
Msa1060120 MtrunA17_Chr3g0104061 57.581 554 218 6 27 580 20 556 0.0 658
Msa1060120 MtrunA17_Chr5g0404341 55.232 583 241 9 1 580 1 566 0.0 655
Msa1060120 MtrunA17_Chr5g0404361 55.148 573 232 9 15 580 57 611 0.0 647
Msa1060120 MtrunA17_Chr5g0436461 52.348 575 250 9 8 580 2 554 0.0 610
Msa1060120 MtrunA17_Chr5g0437681 49.303 574 273 9 13 580 6 567 0.0 573
Msa1060120 MtrunA17_Chr5g0431581 51.332 563 248 10 25 580 17 560 0.0 558
Msa1060120 MtrunA17_Chr3g0114211 47.521 585 282 11 4 580 3 570 0.0 553
Msa1060120 MtrunA17_Chr2g0278811 45.876 582 275 7 30 580 35 607 0.0 528
Msa1060120 MtrunA17_Chr7g0240971 48.199 583 276 10 10 580 2 570 2.20e-178 516
Msa1060120 MtrunA17_Chr8g0346581 45.567 564 281 10 25 580 26 571 2.52e-174 506
Msa1060120 MtrunA17_Chr7g0240991 43.617 564 299 9 26 580 18 571 6.35e-170 494
Msa1060120 MtrunA17_Chr4g0008521 45.552 562 275 8 34 580 27 572 1.11e-165 483
Msa1060120 MtrunA17_Chr3g0133861 44.957 347 163 9 235 570 1 330 1.64e-86 272
Msa1060120 MtrunA17_Chr8g0382691 32.409 577 317 21 24 567 26 562 2.54e-74 247
Msa1060120 MtrunA17_Chr3g0118321 32.112 573 325 16 11 554 4 541 1.42e-69 234
Msa1060120 MtrunA17_Chr3g0118331 31.283 569 334 17 11 554 4 540 4.28e-66 225
Msa1060120 MtrunA17_Chr5g0436431 46.218 238 110 6 303 538 7 228 1.30e-60 200
Msa1060120 MtrunA17_Chr3g0133871 45.588 204 105 2 14 212 9 211 1.51e-59 197
Msa1060120 MtrunA17_Chr4g0056511 28.250 577 371 18 14 580 6 549 1.88e-49 180
Msa1060120 MtrunA17_Chr3g0079321 26.285 506 326 16 51 545 47 516 4.27e-45 168
Msa1060120 MtrunA17_Chr1g0157341 26.042 576 367 16 16 580 5 532 9.60e-44 164
Msa1060120 MtrunA17_Chr4g0038671 26.128 532 338 15 15 540 10 492 6.99e-42 158
Msa1060120 MtrunA17_Chr3g0143671 24.955 557 356 15 33 580 30 533 1.87e-41 157
Msa1060120 MtrunA17_Chr4g0024861 26.040 553 355 18 33 580 27 530 1.32e-38 149
Msa1060120 MtrunA17_Chr7g0234061 26.729 535 335 21 34 554 30 521 3.11e-37 146
Msa1060120 MtrunA17_Chr3g0121171 24.863 547 355 13 23 556 1159 1662 9.62e-35 140
Msa1060120 MtrunA17_Chr3g0121171 24.453 548 356 14 23 556 584 1087 1.41e-33 137
Msa1060120 MtrunA17_Chr3g0121171 24.906 530 347 13 34 556 27 512 1.60e-33 137
Msa1060120 MtrunA17_Chr3g0121171 23.579 475 312 13 89 556 1798 2228 5.24e-26 114
Msa1060120 MtrunA17_Chr3g0121151 24.453 548 356 14 23 556 49 552 1.56e-34 138
Msa1060120 MtrunA17_Chr4g0043261 25.547 548 341 15 34 568 26 519 1.99e-34 137
Msa1060120 MtrunA17_Chr3g0121161 24.453 548 356 14 23 556 49 552 2.89e-34 137
Msa1060120 MtrunA17_Chr2g0322441 25.926 513 326 15 33 540 30 493 5.48e-34 135
Msa1060120 MtrunA17_Chr5g0402831 24.729 554 347 18 33 571 31 529 1.02e-31 129
Msa1060120 MtrunA17_Chr4g0043251 25.000 520 325 16 51 556 45 513 6.59e-31 127
Msa1060120 MtrunA17_Chr8g0374261 25.150 501 314 17 54 546 50 497 1.98e-29 122
Msa1060120 MtrunA17_Chr8g0374271 23.930 514 334 17 33 540 31 493 9.00e-29 120
Msa1060120 MtrunA17_Chr3g0118351 31.928 332 180 10 245 554 5 312 9.59e-29 117
Msa1060120 MtrunA17_Chr4g0075071 25.891 533 346 14 11 540 8 494 1.92e-28 119
Msa1060120 MtrunA17_Chr3g0118341 38.411 151 90 3 11 159 4 153 1.73e-26 107
Msa1060120 MtrunA17_Chr4g0024641 24.190 463 294 17 85 540 1 413 4.89e-20 94.7
Msa1060120 MtrunA17_Chr1g0197301 28.261 368 212 16 223 580 4 329 3.95e-19 89.0
Msa1060120 MtrunA17_Chr5g0436411 39.506 81 46 1 8 88 2 79 2.85e-14 68.2
Msa1060120 MtrunA17_Chr3g0118931 39.560 91 50 2 490 580 10 95 3.85e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1060120 AT5G60020.1 82.014 556 95 3 30 580 22 577 0.0 960
Msa1060120 AT5G60020.3 82.721 544 89 3 42 580 2 545 0.0 946
Msa1060120 AT5G60020.2 81.518 514 90 3 30 538 22 535 0.0 875
Msa1060120 AT2G29130.1 71.831 568 151 5 15 580 13 573 0.0 860
Msa1060120 AT2G38080.1 57.672 567 223 7 15 580 8 558 0.0 667
Msa1060120 AT5G03260.1 55.185 569 234 9 14 580 8 557 0.0 639
Msa1060120 AT5G58910.2 55.455 550 231 7 33 580 30 567 0.0 635
Msa1060120 AT5G58910.3 55.455 550 230 8 33 580 30 566 0.0 632
Msa1060120 AT1G18140.1 52.575 563 256 5 26 580 22 581 0.0 627
Msa1060120 AT5G01190.1 54.770 566 242 5 15 580 7 558 0.0 620
Msa1060120 AT5G58910.1 54.630 540 224 8 43 580 3 523 0.0 603
Msa1060120 AT5G01190.2 54.064 566 232 6 15 580 7 544 0.0 600
Msa1060120 AT2G40370.1 49.308 578 274 11 15 580 10 580 0.0 565
Msa1060120 AT2G30210.1 49.562 571 274 10 15 580 9 570 0.0 565
Msa1060120 AT5G05390.1 48.348 575 272 10 15 580 7 565 0.0 548
Msa1060120 AT5G09360.1 45.201 573 293 10 11 580 15 569 0.0 535
Msa1060120 AT5G07130.1 47.150 579 286 11 10 580 3 569 0.0 524
Msa1060120 AT2G46570.1 43.694 563 287 10 28 580 27 569 2.23e-173 503
Msa1060120 AT3G09220.1 47.477 535 263 5 35 563 28 550 1.70e-171 498
Msa1060120 AT5G48100.1 45.018 542 282 8 34 570 23 553 1.25e-162 476
Msa1060120 AT5G01040.1 43.031 574 299 9 15 580 13 566 1.33e-158 466
Msa1060120 AT5G01050.1 43.229 576 297 10 15 580 13 568 1.45e-157 464
Msa1060120 AT5G07130.2 47.465 493 243 9 95 580 1 484 1.10e-155 455
Msa1060120 AT5G07130.3 47.465 493 243 9 95 580 1 484 1.10e-155 455
Msa1060120 AT2G46570.2 42.685 499 260 9 90 580 4 484 2.10e-148 436
Msa1060120 AT3G09220.2 47.414 464 226 5 106 563 2 453 1.46e-143 424
Msa1060120 AT5G21105.1 33.449 574 316 19 29 570 34 573 7.89e-74 247
Msa1060120 AT4G39830.1 31.281 601 342 20 7 572 7 571 1.98e-72 243
Msa1060120 AT5G21100.1 32.923 568 310 20 23 559 15 542 7.84e-72 241
Msa1060120 AT5G21105.3 33.210 539 297 18 29 538 34 538 1.02e-64 221
Msa1060120 AT4G39830.2 30.784 510 286 18 94 572 3 476 5.68e-50 180
Msa1060120 AT4G39830.3 30.891 505 282 18 99 572 6 474 2.35e-49 178
Msa1060120 AT4G12420.1 27.818 550 348 18 14 554 10 519 1.98e-47 175
Msa1060120 AT4G12420.2 27.818 550 348 18 14 554 10 519 1.98e-47 175
Msa1060120 AT1G75790.1 27.307 531 336 17 16 540 9 495 2.35e-47 174
Msa1060120 AT4G39830.4 29.862 509 279 17 94 572 3 463 1.87e-46 170
Msa1060120 AT5G48450.2 28.676 544 340 23 17 554 12 513 1.73e-43 164
Msa1060120 AT1G21860.1 25.730 548 353 13 1 546 1 496 2.00e-43 163
Msa1060120 AT5G48450.1 28.676 544 340 23 17 554 12 513 3.29e-43 164
Msa1060120 AT1G21850.1 26.606 545 345 16 4 546 5 496 1.94e-42 160
Msa1060120 AT4G25240.2 26.289 582 378 19 11 580 8 550 2.15e-41 158
Msa1060120 AT4G25240.1 26.289 582 378 19 11 580 8 550 2.15e-41 158
Msa1060120 AT1G76160.1 25.319 549 355 15 12 556 9 506 2.84e-41 157
Msa1060120 AT1G41830.1 24.476 572 374 16 17 580 10 531 6.00e-41 156
Msa1060120 AT5G21105.2 34.072 361 201 12 218 570 51 382 9.50e-41 152
Msa1060120 AT5G51480.1 25.483 569 376 22 24 580 18 550 1.61e-40 155
Msa1060120 AT4G28090.1 24.214 541 353 17 14 546 9 500 9.84e-38 147
Msa1060120 AT4G22010.1 25.271 554 359 17 33 580 26 530 9.60e-37 144
Msa1060120 AT5G66920.1 24.545 550 365 16 33 580 37 538 4.35e-35 139
Msa1060120 AT4G38420.1 24.254 536 355 18 11 540 9 499 5.47e-33 133
Msa1060120 AT1G55570.1 25.636 511 336 15 34 540 30 500 8.98e-33 132
Msa1060120 AT3G13390.1 25.145 517 331 12 34 540 29 499 2.09e-32 132
Msa1060120 AT1G55560.1 24.558 509 341 12 35 540 28 496 1.18e-31 129
Msa1060120 AT4G37160.1 23.273 550 370 12 35 580 33 534 1.35e-29 123
Msa1060120 AT3G13400.2 23.969 509 346 13 34 540 28 497 3.44e-29 122
Msa1060120 AT3G13400.1 23.969 509 346 13 34 540 28 497 3.44e-29 122
Msa1060120 AT4G38420.3 23.938 518 343 18 11 522 9 481 7.05e-29 120
Msa1060120 AT4G38420.2 28.625 269 181 6 11 278 9 267 4.01e-27 115
Msa1060120 AT2G23630.2 24.627 536 347 14 51 580 53 537 1.77e-24 107
Msa1060120 AT2G23630.1 24.627 536 347 14 51 580 48 532 2.05e-24 107
Msa1060120 AT4G37160.2 26.054 261 182 3 35 294 33 283 2.48e-23 103

Find 174 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTACAATTACACAATTAA+AGG 0.195877 7_2:+47650828 Msa1060120:CDS
TCTGAAGCCTACACAATTAA+TGG 0.196711 7_2:+47651145 Msa1060120:CDS
GGCACAATCTTGTCACATTT+TGG 0.198737 7_2:-47650502 None:intergenic
CTTCTTCAATCACACTTTAC+TGG 0.235780 7_2:+47652255 Msa1060120:CDS
TCTTGGCAGTGCCCAGTTTC+CGG 0.239305 7_2:+47652080 Msa1060120:CDS
AAGGAAGTTCCCATGATATT+TGG 0.245470 7_2:+47650966 Msa1060120:CDS
AAGGGACTGTTTGGGAAATA+AGG 0.252706 7_2:-47652300 None:intergenic
GGCTTTAACTTCTTTGTTGT+TGG 0.273389 7_2:+47652474 Msa1060120:CDS
TGCCCAGTTGGATAACAAAA+AGG 0.275690 7_2:-47652930 None:intergenic
CACAACTGTTGCTGGTATCT+TGG 0.309201 7_2:+47651930 Msa1060120:CDS
CTGCAAGACACTAGCATTCT+TGG 0.313661 7_2:+47652423 Msa1060120:CDS
TGGTAACTACGATTCAAATA+AGG 0.314009 7_2:+47652506 Msa1060120:CDS
GCCAAAAGAGTGTTCCTCTT+TGG 0.315527 7_2:-47650851 None:intergenic
GTGGAACGTTAGCCGGAAAC+TGG 0.316439 7_2:-47652092 None:intergenic
TTCAAGGAAGTACATCAAAT+TGG 0.316469 7_2:-47650385 None:intergenic
GCCAAAGAGGAACACTCTTT+TGG 0.325478 7_2:+47650850 Msa1060120:CDS
TTTGACAACACAACTGTTGC+TGG 0.325687 7_2:+47651922 Msa1060120:CDS
TTTGTTGTTGGACAAGGATT+TGG 0.332895 7_2:+47652486 Msa1060120:CDS
CATTGGGTCCCTGACAAGTT+TGG 0.333389 7_2:-47652176 None:intergenic
GTTTCCAGGACCTCGCATTA+TGG 0.352691 7_2:+47650556 Msa1060120:CDS
TACACAATTAATGGACTTCC+AGG 0.359750 7_2:+47651154 Msa1060120:CDS
TGGTTTGGCCAGGGGCAATA+AGG 0.361266 7_2:-47651813 None:intergenic
TTTGGCATGCTCATATATCT+TGG 0.375615 7_2:+47650868 Msa1060120:CDS
CGTAGAAGGTAAGTCTTTCC+AGG 0.379445 7_2:-47651679 None:intergenic
AATGGATGCAAGGGACTGTT+TGG 0.382635 7_2:-47652309 None:intergenic
GAGTTTGAACTGTGAGTTGA+TGG 0.387802 7_2:-47650202 None:intergenic
AAACATAGCTTTGACCTGTT+TGG 0.389019 7_2:-47650809 None:intergenic
CCAATTGTATTCCTTTCAAC+AGG 0.394251 7_2:-47652555 None:intergenic
AGGGACTGTTTGGGAAATAA+GGG 0.397523 7_2:-47652299 None:intergenic
TGAGAAGAACATTAGTGGTT+TGG 0.400081 7_2:-47651828 None:intergenic
TGGTTAAGATCAACACTCTA+TGG 0.410307 7_2:+47650888 Msa1060120:CDS
ACAGTGAACGGTCAGTTTCC+AGG 0.413798 7_2:+47650542 Msa1060120:CDS
ATAGCACAAGCCCTGCAAAC+TGG 0.417808 7_2:+47651106 Msa1060120:CDS
TCAAAGCAACCAAACTTGTC+AGG 0.420571 7_2:+47652167 Msa1060120:CDS
TTGCAGGGCTTGTGCTATGA+TGG 0.423034 7_2:-47651101 None:intergenic
AAATTCATTACCAAATATCA+TGG 0.423209 7_2:-47650976 None:intergenic
GGTGTTGTTTGGTGGGGTGC+CGG 0.425328 7_2:-47652340 None:intergenic
GCGGAATGATGAGTCTTTGA+TGG 0.425975 7_2:-47651964 None:intergenic
TTGCTCACCATGGTGTTGTT+TGG 0.428117 7_2:-47652351 None:intergenic
CTCATTAAGAAGGCTGCATT+GGG 0.435807 7_2:-47651868 None:intergenic
CTCACCATGGTGTTGTTTGG+TGG 0.438016 7_2:-47652348 None:intergenic
CAAGATTGTGCCACAGGAAG+AGG 0.442101 7_2:+47650513 Msa1060120:CDS
TACAGATACATTCAAGCTAA+AGG 0.442726 7_2:+47651651 Msa1060120:intron
GTGTAGGCTTCAGAAACATT+TGG 0.443091 7_2:-47651136 None:intergenic
TAGCACAAGCCCTGCAAACT+GGG 0.444789 7_2:+47651107 Msa1060120:CDS
CGTCGGCTTCAACAACTTTG+AGG 0.450966 7_2:-47651756 None:intergenic
GTTCCCTGGCCGGTAGCATA+TGG 0.460544 7_2:-47651898 None:intergenic
ATCAGGATGGGCTGATGGAC+CGG 0.463992 7_2:+47650764 Msa1060120:CDS
TCACCATGGTGTTGTTTGGT+GGG 0.464819 7_2:-47652347 None:intergenic
AGGATGGTGTTAGTCTCAAA+AGG 0.465017 7_2:-47651793 None:intergenic
TAATTGTGTGTGCAGGGGTA+TGG 0.466127 7_2:+47652718 Msa1060120:intron
AGAACATTAGTGGTTTGGCC+AGG 0.466664 7_2:-47651823 None:intergenic
ACTCATTAAGAAGGCTGCAT+TGG 0.468803 7_2:-47651869 None:intergenic
GGTCTTGAGAAGAACATTAG+TGG 0.469300 7_2:-47651833 None:intergenic
CAGCGTTGATCAAACGTAGA+AGG 0.469718 7_2:-47651693 None:intergenic
ACTTTCTGTGGAACGTTAGC+CGG 0.470540 7_2:-47652099 None:intergenic
GCATTTGAGTTTGCACTGGC+CGG 0.473968 7_2:+47650347 Msa1060120:CDS
CAAGTTTGGTTGCTTTGACA+AGG 0.474522 7_2:-47652162 None:intergenic
TACATCAAATTGGTAGTGTC+TGG 0.475328 7_2:-47650375 None:intergenic
TGCTGCAAACATTGTTCCAT+TGG 0.477184 7_2:-47652193 None:intergenic
ACACAATGCCCCATCCAAAC+AGG 0.478118 7_2:+47650795 Msa1060120:CDS
AAAGAAGTGTCATTAAGTGC+TGG 0.478611 7_2:-47652027 None:intergenic
CTAGCCATAATGCGAGGTCC+TGG 0.480059 7_2:-47650560 None:intergenic
TTGGTGTCCCGTCTGGTGGA+TGG 0.481797 7_2:+47652574 Msa1060120:CDS
AACTTCTTTGTTGTTGGACA+AGG 0.483301 7_2:+47652480 Msa1060120:CDS
AATACAATTGGTGTCCCGTC+TGG 0.486060 7_2:+47652567 Msa1060120:CDS
AGAAGTTAAAGCCATGCAAA+TGG 0.491056 7_2:-47652464 None:intergenic
GGGAGAGTAGGTTTGAATAG+TGG 0.491888 7_2:-47652006 None:intergenic
TTGCGCATTTGAGTTTGCAC+TGG 0.500141 7_2:+47650343 Msa1060120:CDS
TAACACTTGGGAAGATCTGC+TGG 0.501115 7_2:-47652840 None:intergenic
TTAAAGCCATGCAAATGGAC+AGG 0.501477 7_2:-47652459 None:intergenic
GAGCAGTTATACAATGGCCC+TGG 0.502633 7_2:-47651172 None:intergenic
CTTCAATCAGGATGGGCTGA+TGG 0.504024 7_2:+47650759 Msa1060120:CDS
GGCATTCGACAACTTCAATC+AGG 0.504353 7_2:+47650747 Msa1060120:CDS
AGCTTTGACCTGTTTGGATG+GGG 0.505152 7_2:-47650803 None:intergenic
TATCATGGGAACTTCCTTGT+GGG 0.505192 7_2:-47650961 None:intergenic
TCGAAGAAACTCCGTAGTCT+TGG 0.509213 7_2:+47652063 Msa1060120:CDS
GTCGGCTTCAACAACTTTGA+GGG 0.510915 7_2:-47651755 None:intergenic
TTCAAGCTAAAGGTCAAGCC+TGG 0.511697 7_2:+47651661 Msa1060120:CDS
GAACATTAGTGGTTTGGCCA+GGG 0.511967 7_2:-47651822 None:intergenic
CAGGACCTCGCATTATGGCT+AGG 0.513788 7_2:+47650561 Msa1060120:CDS
TTGGTTGCTTTGACAAGGGT+TGG 0.514248 7_2:-47652157 None:intergenic
ATGGTTCATGCATTGTCACT+TGG 0.515554 7_2:+47652737 Msa1060120:CDS
TAGCTTTGACCTGTTTGGAT+GGG 0.516600 7_2:-47650804 None:intergenic
ACACTTTACTGGACAATCCA+AGG 0.522053 7_2:+47652266 Msa1060120:CDS
GCTGCAAACATTGTTCCATT+GGG 0.522090 7_2:-47652192 None:intergenic
ACTTGGAAGTACATACAAGC+TGG 0.523275 7_2:+47652754 Msa1060120:CDS
GGGGTGCCGGTGTAATTGAA+TGG 0.523303 7_2:-47652327 None:intergenic
TGGTGTCCCGTCTGGTGGAT+GGG 0.524205 7_2:+47652575 Msa1060120:CDS
ATGGATGCAAGGGACTGTTT+GGG 0.525250 7_2:-47652308 None:intergenic
AAAACAACATCTCGATTCAC+TGG 0.525771 7_2:+47650624 Msa1060120:CDS
TTGGTAGTGTCTGGTAGTGC+CGG 0.526075 7_2:-47650366 None:intergenic
AACACCATCCTTATTGCCCC+TGG 0.528777 7_2:+47651805 Msa1060120:CDS
TCATTAAGTGCTGGGAGAGT+AGG 0.529980 7_2:-47652018 None:intergenic
CGGAATGATGAGTCTTTGAT+GGG 0.531487 7_2:-47651963 None:intergenic
ATAGCTTTGACCTGTTTGGA+TGG 0.531598 7_2:-47650805 None:intergenic
AAGAAGTGTCATTAAGTGCT+GGG 0.532392 7_2:-47652026 None:intergenic
TTGGGAAGATCTGCTGGTGG+TGG 0.533279 7_2:-47652834 None:intergenic
CACCATGGTGTTGTTTGGTG+GGG 0.534985 7_2:-47652346 None:intergenic
ATGTGACAAGATTGTGCCAC+AGG 0.535219 7_2:+47650507 Msa1060120:CDS
AAGTTTGGTTGCTTTGACAA+GGG 0.538040 7_2:-47652161 None:intergenic
TACAAGCTGGGGTCTTAAGA+TGG 0.539412 7_2:+47652767 Msa1060120:CDS
TGGTCTAGCACTCATTAAGA+AGG 0.539912 7_2:-47651878 None:intergenic
ATGAATAGCAACTGCCCAGT+TGG 0.539978 7_2:-47652942 None:intergenic
CCTGTTGAAAGGAATACAAT+TGG 0.547051 7_2:+47652555 Msa1060120:CDS
ATAAGGGGCGTAGACACCCT+TGG 0.547982 7_2:-47652283 None:intergenic
AGCTCCACACTTGTGTTGAA+AGG 0.548871 7_2:-47652396 None:intergenic
TTCGACAACTTCAATCAGGA+TGG 0.551165 7_2:+47650751 Msa1060120:CDS
AAGTGCTTATCAACTTTCTG+TGG 0.551982 7_2:-47652111 None:intergenic
TTGTGTTGTCAAAAGTTCCC+TGG 0.552350 7_2:-47651912 None:intergenic
AGGACCTCGCATTATGGCTA+GGG 0.558581 7_2:+47650562 Msa1060120:CDS
TTTAGGTTGAAGTTAACACT+TGG 0.558796 7_2:-47652853 None:intergenic
CTTGGAAGTACATACAAGCT+GGG 0.559704 7_2:+47652755 Msa1060120:CDS
GGGCATTGTGTCACATATGC+CGG 0.560515 7_2:-47650783 None:intergenic
TGGAAGTCCATTAATTGTGT+AGG 0.560908 7_2:-47651152 None:intergenic
AACATTAGTGGTTTGGCCAG+GGG 0.564171 7_2:-47651821 None:intergenic
TAAGATGGCATGGATTGTGT+TGG 0.564341 7_2:+47652782 Msa1060120:CDS
ACCTTGTTGATCCTGTTGAA+AGG 0.566819 7_2:+47652544 Msa1060120:CDS
TTTGACAAGGGTTGGTACCA+AGG 0.568017 7_2:-47652149 None:intergenic
TTGGCCAGGGGCAATAAGGA+TGG 0.568368 7_2:-47651809 None:intergenic
GGAATACAATTGTATAGTCA+AGG 0.569355 7_2:-47653069 None:intergenic
CTTTGTTCCGTTGCTCACCA+TGG 0.570394 7_2:-47652361 None:intergenic
TTCTTGGGAAGAATGATGAG+AGG 0.570952 7_2:-47650912 None:intergenic
AAGAGGATGGTGACAGTGAA+CGG 0.571557 7_2:+47650530 Msa1060120:CDS
GAGCAACGGAACAAAGGTTA+CGG 0.576807 7_2:+47652368 Msa1060120:CDS
AGTCACCCTGTCCATTTGCA+TGG 0.577613 7_2:+47652453 Msa1060120:CDS
TAGACCATATGCTACCGGCC+AGG 0.578944 7_2:+47651894 Msa1060120:CDS
TGCATTGGGATAGTGTGACT+TGG 0.579231 7_2:-47651854 None:intergenic
CAAACTTGTCAGGGACCCAA+TGG 0.579816 7_2:+47652177 Msa1060120:CDS
GTTGTCAAAAGTTCCCTGGC+CGG 0.582928 7_2:-47651908 None:intergenic
TGGAACGTTAGCCGGAAACT+GGG 0.583850 7_2:-47652091 None:intergenic
TACACAATTAAAGGCCAAAG+AGG 0.584584 7_2:+47650837 Msa1060120:CDS
ACTGGGCACTGCCAAGACTA+CGG 0.584704 7_2:-47652074 None:intergenic
ATGGCATGGATTGTGTTGGA+TGG 0.585439 7_2:+47652786 Msa1060120:CDS
GCTGGGGTCTTAAGATGGCA+TGG 0.586422 7_2:+47652772 Msa1060120:CDS
TCTTCCTTTCAACACAAGTG+TGG 0.589113 7_2:+47652392 Msa1060120:CDS
AACAACACCATGGTGAGCAA+CGG 0.589304 7_2:+47652354 Msa1060120:CDS
CTGTCACCATCCTCTTCCTG+TGG 0.589917 7_2:-47650523 None:intergenic
ACCAACCTGGATTATCTGCT+AGG 0.591178 7_2:-47652611 None:intergenic
AATTCATTACCAAATATCAT+GGG 0.593160 7_2:-47650975 None:intergenic
AGCACAAGCCCTGCAAACTG+GGG 0.594583 7_2:+47651108 Msa1060120:CDS
AGGTTTCACATAAATAGCGT+CGG 0.595219 7_2:-47651773 None:intergenic
AGACCATATGCTACCGGCCA+GGG 0.596614 7_2:+47651895 Msa1060120:CDS
ATCATGGGAACTTCCTTGTG+GGG 0.597762 7_2:-47650960 None:intergenic
ACAATTGGTGTCCCGTCTGG+TGG 0.601621 7_2:+47652570 Msa1060120:CDS
AGATTCCTAGCAGATAATCC+AGG 0.604726 7_2:+47652606 Msa1060120:CDS
TAGCAACCCATCCACCAGAC+GGG 0.606966 7_2:-47652581 None:intergenic
CATGGTGAGCAACGGAACAA+AGG 0.608494 7_2:+47652362 Msa1060120:CDS
AGTGCTAGACCATATGCTAC+CGG 0.615170 7_2:+47651889 Msa1060120:CDS
TTGCATCCATTCAATTACAC+CGG 0.616954 7_2:+47652321 Msa1060120:CDS
GTGTAATTGAATGGATGCAA+GGG 0.617657 7_2:-47652318 None:intergenic
TCGACAACTTCAATCAGGAT+GGG 0.618728 7_2:+47650752 Msa1060120:CDS
CAAAGCAACCAAACTTGTCA+GGG 0.619064 7_2:+47652168 Msa1060120:CDS
TAACAACTTTGATAACAAGA+CGG 0.619961 7_2:-47650592 None:intergenic
TCCTTTCAACAGGATCAACA+AGG 0.625266 7_2:-47652545 None:intergenic
CCTCGCATTATGGCTAGGGA+AGG 0.625298 7_2:+47650566 Msa1060120:CDS
TAAAGCCATGCAAATGGACA+GGG 0.625691 7_2:-47652458 None:intergenic
TTAGGTTGAAGTTAACACTT+GGG 0.632484 7_2:-47652852 None:intergenic
GATTGAAGAAGTGCGGTGGT+TGG 0.633085 7_2:-47652243 None:intergenic
ATAGCAACCCATCCACCAGA+CGG 0.634950 7_2:-47652582 None:intergenic
GGGACTGTTTGGGAAATAAG+GGG 0.641737 7_2:-47652298 None:intergenic
ATATCATGGGAACTTCCTTG+TGG 0.653096 7_2:-47650962 None:intergenic
CACTTTACTGGACAATCCAA+GGG 0.654690 7_2:+47652267 Msa1060120:CDS
CACCCCACCAAACAACACCA+TGG 0.657757 7_2:+47652344 Msa1060120:CDS
ACACAATTAATGGACTTCCA+GGG 0.662456 7_2:+47651155 Msa1060120:CDS
ATGGTTCAATGCAGATACTG+AGG 0.670234 7_2:+47651078 Msa1060120:CDS
GCACAAGCCCTGCAAACTGG+GGG 0.674904 7_2:+47651109 Msa1060120:CDS
TTGGAAGTACATACAAGCTG+GGG 0.678866 7_2:+47652756 Msa1060120:CDS
CACTTGGGAAGATCTGCTGG+TGG 0.686971 7_2:-47652837 None:intergenic
GGTGTAATTGAATGGATGCA+AGG 0.689847 7_2:-47652319 None:intergenic
CCTTCCCTAGCCATAATGCG+AGG 0.690197 7_2:-47650566 None:intergenic
ATTGTGCCACAGGAAGAGGA+TGG 0.703411 7_2:+47650517 Msa1060120:CDS
GTGTGATTGAAGAAGTGCGG+TGG 0.708370 7_2:-47652247 None:intergenic
AAAGTGTGATTGAAGAAGTG+CGG 0.738535 7_2:-47652250 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAATAAAAGCAATTTT+AGG - chr7_2:47652873-47652892 None:intergenic 10.0%
!! AAAGTGTAATAAATATTTCA+AGG - chr7_2:47650404-47650423 None:intergenic 15.0%
!! GCTTATGTAAATATAAATAT+GGG - chr7_2:47651026-47651045 None:intergenic 15.0%
!! AGCTTATGTAAATATAAATA+TGG - chr7_2:47651027-47651046 None:intergenic 15.0%
!! ATATAGAATTCTTTATGAAA+CGG + chr7_2:47651587-47651606 Msa1060120:intron 15.0%
!!! AAAAACAATGTTGCAATTTT+AGG - chr7_2:47650308-47650327 None:intergenic 20.0%
!! AAAGTAATGTGTAAAAAACT+TGG + chr7_2:47650705-47650724 Msa1060120:intron 20.0%
!! GTTTACAATTACACAATTAA+AGG + chr7_2:47650828-47650847 Msa1060120:CDS 20.0%
!! AATTCATTACCAAATATCAT+GGG - chr7_2:47650978-47650997 None:intergenic 20.0%
!! AAATTCATTACCAAATATCA+TGG - chr7_2:47650979-47650998 None:intergenic 20.0%
!! CTTCAATCATTTAATAATTG+GGG - chr7_2:47651245-47651264 None:intergenic 20.0%
!! GCTTCAATCATTTAATAATT+GGG - chr7_2:47651246-47651265 None:intergenic 20.0%
!! TGCTTCAATCATTTAATAAT+TGG - chr7_2:47651247-47651266 None:intergenic 20.0%
!!! CAAACTATCAAAATTCATTT+TGG + chr7_2:47652649-47652668 Msa1060120:intron 20.0%
!!! TTTTCTGTAATGGTTTTTTA+AGG + chr7_2:47652981-47653000 Msa1060120:three_prime_UTR 20.0%
!! AATTTTAGGCGATGAAAAAA+TGG - chr7_2:47650294-47650313 None:intergenic 25.0%
!! TAACAACTTTGATAACAAGA+CGG - chr7_2:47650595-47650614 None:intergenic 25.0%
! ATATAAATATGGGAAGACTT+AGG - chr7_2:47651016-47651035 None:intergenic 25.0%
!! CTAACTATACTCTTCAATTT+TGG + chr7_2:47651045-47651064 Msa1060120:intron 25.0%
!!! TACTCTTCAATTTTGGTTTT+AGG + chr7_2:47651052-47651071 Msa1060120:intron 25.0%
!!! ACTCTTCAATTTTGGTTTTA+GGG + chr7_2:47651053-47651072 Msa1060120:intron 25.0%
!!! TTTTTAGAGCAGTTATACAA+TGG - chr7_2:47651181-47651200 None:intergenic 25.0%
!!! TTGTATAACTGCTCTAAAAA+AGG + chr7_2:47651181-47651200 Msa1060120:CDS 25.0%
!! GGCTTCATATTATCAATTTT+AGG - chr7_2:47651277-47651296 None:intergenic 25.0%
!!! CAACAAGGTTAAAGTTTTTT+GGG - chr7_2:47652533-47652552 None:intergenic 25.0%
!!! TCAACAAGGTTAAAGTTTTT+TGG - chr7_2:47652534-47652553 None:intergenic 25.0%
!!! CTTTAGTTTGTTTTCTGTAA+TGG + chr7_2:47652971-47652990 Msa1060120:three_prime_UTR 25.0%
CTCATTCAGAGAGAAAAAAA+TGG + chr7_2:47650262-47650281 Msa1060120:exon 30.0%
! TTCAAGGAAGTACATCAAAT+TGG - chr7_2:47650388-47650407 None:intergenic 30.0%
TACTTTGCTTGTAACATATG+AGG + chr7_2:47650459-47650478 Msa1060120:intron 30.0%
ATGAGGTTATTTATGCAGAT+AGG + chr7_2:47650476-47650495 Msa1060120:intron 30.0%
TGAGGTTATTTATGCAGATA+GGG + chr7_2:47650477-47650496 Msa1060120:intron 30.0%
! GGATATGGAACATTTTTCTT+GGG - chr7_2:47650930-47650949 None:intergenic 30.0%
! AGGATATGGAACATTTTTCT+TGG - chr7_2:47650931-47650950 None:intergenic 30.0%
!!! CTCTTCAATTTTGGTTTTAG+GGG + chr7_2:47651054-47651073 Msa1060120:intron 30.0%
ACTATAAGTAGTGACGTATA+AGG - chr7_2:47651298-47651317 None:intergenic 30.0%
AACATGTACAATTTCACATG+CGG - chr7_2:47651358-47651377 None:intergenic 30.0%
TACAGATACATTCAAGCTAA+AGG + chr7_2:47651651-47651670 Msa1060120:intron 30.0%
!!! AAGCTTTTTTAGTGAAGAAG+CGG - chr7_2:47651986-47652005 None:intergenic 30.0%
TGGTAACTACGATTCAAATA+AGG + chr7_2:47652506-47652525 Msa1060120:CDS 30.0%
GATAGTTTGATGAATTGACT+AGG - chr7_2:47652638-47652657 None:intergenic 30.0%
!! TTAGGTTGAAGTTAACACTT+GGG - chr7_2:47652855-47652874 None:intergenic 30.0%
!! TTTAGGTTGAAGTTAACACT+TGG - chr7_2:47652856-47652875 None:intergenic 30.0%
! GTTACAGCATTTTCTTTCTT+TGG + chr7_2:47653021-47653040 Msa1060120:three_prime_UTR 30.0%
GGAATACAATTGTATAGTCA+AGG - chr7_2:47653072-47653091 None:intergenic 30.0%
! GGAATTTTCACTCAAATCAA+TGG - chr7_2:47653093-47653112 None:intergenic 30.0%
!! TACATCAAATTGGTAGTGTC+TGG - chr7_2:47650378-47650397 None:intergenic 35.0%
AAAACAACATCTCGATTCAC+TGG + chr7_2:47650624-47650643 Msa1060120:CDS 35.0%
AACTTGGCCATCTTTGTAAT+AGG + chr7_2:47650721-47650740 Msa1060120:intron 35.0%
!! AAACATAGCTTTGACCTGTT+TGG - chr7_2:47650812-47650831 None:intergenic 35.0%
TACACAATTAAAGGCCAAAG+AGG + chr7_2:47650837-47650856 Msa1060120:CDS 35.0%
TTTGGCATGCTCATATATCT+TGG + chr7_2:47650868-47650887 Msa1060120:CDS 35.0%
TGGTTAAGATCAACACTCTA+TGG + chr7_2:47650888-47650907 Msa1060120:CDS 35.0%
AAGGAAGTTCCCATGATATT+TGG + chr7_2:47650966-47650985 Msa1060120:CDS 35.0%
!!! CAATTTTGGTTTTAGGGGAA+TGG + chr7_2:47651059-47651078 Msa1060120:intron 35.0%
! TCTGAAGCCTACACAATTAA+TGG + chr7_2:47651145-47651164 Msa1060120:CDS 35.0%
TGGAAGTCCATTAATTGTGT+AGG - chr7_2:47651155-47651174 None:intergenic 35.0%
!! TACACAATTAATGGACTTCC+AGG + chr7_2:47651154-47651173 Msa1060120:CDS 35.0%
!! ACACAATTAATGGACTTCCA+GGG + chr7_2:47651155-47651174 Msa1060120:CDS 35.0%
TATTTGCTCTTGGTTCAAAG+TGG - chr7_2:47651507-47651526 None:intergenic 35.0%
!! CCATTTTTCGTATTTGCTCT+TGG - chr7_2:47651517-47651536 None:intergenic 35.0%
CCAAGAGCAAATACGAAAAA+TGG + chr7_2:47651514-47651533 Msa1060120:intron 35.0%
AGGTTTCACATAAATAGCGT+CGG - chr7_2:47651776-47651795 None:intergenic 35.0%
TGAGAAGAACATTAGTGGTT+TGG - chr7_2:47651831-47651850 None:intergenic 35.0%
!! AAGAAGTGTCATTAAGTGCT+GGG - chr7_2:47652029-47652048 None:intergenic 35.0%
!! AAAGAAGTGTCATTAAGTGC+TGG - chr7_2:47652030-47652049 None:intergenic 35.0%
AAGTGCTTATCAACTTTCTG+TGG - chr7_2:47652114-47652133 None:intergenic 35.0%
! TTTTTCTTCACAGTAAGCCT+TGG + chr7_2:47652132-47652151 Msa1060120:CDS 35.0%
! AAGTTTGGTTGCTTTGACAA+GGG - chr7_2:47652164-47652183 None:intergenic 35.0%
AAAGTGTGATTGAAGAAGTG+CGG - chr7_2:47652253-47652272 None:intergenic 35.0%
CTTCTTCAATCACACTTTAC+TGG + chr7_2:47652255-47652274 Msa1060120:CDS 35.0%
GTGTAATTGAATGGATGCAA+GGG - chr7_2:47652321-47652340 None:intergenic 35.0%
TTGCATCCATTCAATTACAC+CGG + chr7_2:47652321-47652340 Msa1060120:CDS 35.0%
AGAAGTTAAAGCCATGCAAA+TGG - chr7_2:47652467-47652486 None:intergenic 35.0%
! GGCTTTAACTTCTTTGTTGT+TGG + chr7_2:47652474-47652493 Msa1060120:CDS 35.0%
!! AACTTCTTTGTTGTTGGACA+AGG + chr7_2:47652480-47652499 Msa1060120:CDS 35.0%
!! TTTGTTGTTGGACAAGGATT+TGG + chr7_2:47652486-47652505 Msa1060120:CDS 35.0%
CCAATTGTATTCCTTTCAAC+AGG - chr7_2:47652558-47652577 None:intergenic 35.0%
CCTGTTGAAAGGAATACAAT+TGG + chr7_2:47652555-47652574 Msa1060120:CDS 35.0%
AAATGTCTAATTGTGTGTGC+AGG + chr7_2:47652711-47652730 Msa1060120:intron 35.0%
AATGTCTAATTGTGTGTGCA+GGG + chr7_2:47652712-47652731 Msa1060120:intron 35.0%
!! GGTGGAAGTAACTTTTGATT+TGG - chr7_2:47652819-47652838 None:intergenic 35.0%
!!! GTTTTTTAAGGCTTGACTTG+AGG + chr7_2:47652993-47653012 Msa1060120:three_prime_UTR 35.0%
! GAGTTTGAACTGTGAGTTGA+TGG - chr7_2:47650205-47650224 None:intergenic 40.0%
! GGCACAATCTTGTCACATTT+TGG - chr7_2:47650505-47650524 None:intergenic 40.0%
TTCGACAACTTCAATCAGGA+TGG + chr7_2:47650751-47650770 Msa1060120:CDS 40.0%
TCGACAACTTCAATCAGGAT+GGG + chr7_2:47650752-47650771 Msa1060120:CDS 40.0%
!! TAGCTTTGACCTGTTTGGAT+GGG - chr7_2:47650807-47650826 None:intergenic 40.0%
!! ATAGCTTTGACCTGTTTGGA+TGG - chr7_2:47650808-47650827 None:intergenic 40.0%
TTCTTGGGAAGAATGATGAG+AGG - chr7_2:47650915-47650934 None:intergenic 40.0%
! TGGGGTTTTGCAAAAGGATA+TGG - chr7_2:47650945-47650964 None:intergenic 40.0%
TATCATGGGAACTTCCTTGT+GGG - chr7_2:47650964-47650983 None:intergenic 40.0%
ATATCATGGGAACTTCCTTG+TGG - chr7_2:47650965-47650984 None:intergenic 40.0%
ATGGTTCAATGCAGATACTG+AGG + chr7_2:47651078-47651097 Msa1060120:CDS 40.0%
GTGTAGGCTTCAGAAACATT+TGG - chr7_2:47651139-47651158 None:intergenic 40.0%
ATGAAACGGTATCAGCAATG+TGG + chr7_2:47651601-47651620 Msa1060120:intron 40.0%
! AGGATGGTGTTAGTCTCAAA+AGG - chr7_2:47651796-47651815 None:intergenic 40.0%
GGTCTTGAGAAGAACATTAG+TGG - chr7_2:47651836-47651855 None:intergenic 40.0%
CTCATTAAGAAGGCTGCATT+GGG - chr7_2:47651871-47651890 None:intergenic 40.0%
ACTCATTAAGAAGGCTGCAT+TGG - chr7_2:47651872-47651891 None:intergenic 40.0%
TGGTCTAGCACTCATTAAGA+AGG - chr7_2:47651881-47651900 None:intergenic 40.0%
TTGTGTTGTCAAAAGTTCCC+TGG - chr7_2:47651915-47651934 None:intergenic 40.0%
TTTGACAACACAACTGTTGC+TGG + chr7_2:47651922-47651941 Msa1060120:CDS 40.0%
CGGAATGATGAGTCTTTGAT+GGG - chr7_2:47651966-47651985 None:intergenic 40.0%
! CAAGTTTGGTTGCTTTGACA+AGG - chr7_2:47652165-47652184 None:intergenic 40.0%
TCAAAGCAACCAAACTTGTC+AGG + chr7_2:47652167-47652186 Msa1060120:CDS 40.0%
CAAAGCAACCAAACTTGTCA+GGG + chr7_2:47652168-47652187 Msa1060120:CDS 40.0%
GCTGCAAACATTGTTCCATT+GGG - chr7_2:47652195-47652214 None:intergenic 40.0%
TGCTGCAAACATTGTTCCAT+TGG - chr7_2:47652196-47652215 None:intergenic 40.0%
ACACTTTACTGGACAATCCA+AGG + chr7_2:47652266-47652285 Msa1060120:CDS 40.0%
CACTTTACTGGACAATCCAA+GGG + chr7_2:47652267-47652286 Msa1060120:CDS 40.0%
AGGGACTGTTTGGGAAATAA+GGG - chr7_2:47652302-47652321 None:intergenic 40.0%
AAGGGACTGTTTGGGAAATA+AGG - chr7_2:47652303-47652322 None:intergenic 40.0%
GGTGTAATTGAATGGATGCA+AGG - chr7_2:47652322-47652341 None:intergenic 40.0%
TCTTCCTTTCAACACAAGTG+TGG + chr7_2:47652392-47652411 Msa1060120:CDS 40.0%
TAAAGCCATGCAAATGGACA+GGG - chr7_2:47652461-47652480 None:intergenic 40.0%
TTAAAGCCATGCAAATGGAC+AGG - chr7_2:47652462-47652481 None:intergenic 40.0%
ACCTTGTTGATCCTGTTGAA+AGG + chr7_2:47652544-47652563 Msa1060120:CDS 40.0%
TCCTTTCAACAGGATCAACA+AGG - chr7_2:47652548-47652567 None:intergenic 40.0%
AGATTCCTAGCAGATAATCC+AGG + chr7_2:47652606-47652625 Msa1060120:CDS 40.0%
ATGTCTAATTGTGTGTGCAG+GGG + chr7_2:47652713-47652732 Msa1060120:intron 40.0%
ATGGTTCATGCATTGTCACT+TGG + chr7_2:47652737-47652756 Msa1060120:CDS 40.0%
! ACTTGGAAGTACATACAAGC+TGG + chr7_2:47652754-47652773 Msa1060120:CDS 40.0%
! CTTGGAAGTACATACAAGCT+GGG + chr7_2:47652755-47652774 Msa1060120:CDS 40.0%
! TTGGAAGTACATACAAGCTG+GGG + chr7_2:47652756-47652775 Msa1060120:CDS 40.0%
! TAAGATGGCATGGATTGTGT+TGG + chr7_2:47652782-47652801 Msa1060120:CDS 40.0%
!! GCCCTTTTTGTTATCCAACT+GGG + chr7_2:47652928-47652947 Msa1060120:three_prime_UTR 40.0%
GCCCAGTTGGATAACAAAAA+GGG - chr7_2:47652932-47652951 None:intergenic 40.0%
TGCCCAGTTGGATAACAAAA+AGG - chr7_2:47652933-47652952 None:intergenic 40.0%
! TTGCGCATTTGAGTTTGCAC+TGG + chr7_2:47650343-47650362 Msa1060120:CDS 45.0%
ATGTGACAAGATTGTGCCAC+AGG + chr7_2:47650507-47650526 Msa1060120:CDS 45.0%
AAGAGGATGGTGACAGTGAA+CGG + chr7_2:47650530-47650549 Msa1060120:CDS 45.0%
GGCCATCTTTGTAATAGGCA+CGG + chr7_2:47650726-47650745 Msa1060120:intron 45.0%
TGCCGTGCCTATTACAAAGA+TGG - chr7_2:47650731-47650750 None:intergenic 45.0%
GGCATTCGACAACTTCAATC+AGG + chr7_2:47650747-47650766 Msa1060120:CDS 45.0%
! AGCTTTGACCTGTTTGGATG+GGG - chr7_2:47650806-47650825 None:intergenic 45.0%
! GCCAAAGAGGAACACTCTTT+TGG + chr7_2:47650850-47650869 Msa1060120:CDS 45.0%
!! GCCAAAAGAGTGTTCCTCTT+TGG - chr7_2:47650854-47650873 None:intergenic 45.0%
! TCCTTTTGCAAAACCCCACA+AGG + chr7_2:47650947-47650966 Msa1060120:CDS 45.0%
! TCCTTGTGGGGTTTTGCAAA+AGG - chr7_2:47650951-47650970 None:intergenic 45.0%
ATCATGGGAACTTCCTTGTG+GGG - chr7_2:47650963-47650982 None:intergenic 45.0%
TTCAAGCTAAAGGTCAAGCC+TGG + chr7_2:47651661-47651680 Msa1060120:CDS 45.0%
CGTAGAAGGTAAGTCTTTCC+AGG - chr7_2:47651682-47651701 None:intergenic 45.0%
!! CAGCGTTGATCAAACGTAGA+AGG - chr7_2:47651696-47651715 None:intergenic 45.0%
! GTCGGCTTCAACAACTTTGA+GGG - chr7_2:47651758-47651777 None:intergenic 45.0%
! AACATTAGTGGTTTGGCCAG+GGG - chr7_2:47651824-47651843 None:intergenic 45.0%
! GAACATTAGTGGTTTGGCCA+GGG - chr7_2:47651825-47651844 None:intergenic 45.0%
! AGAACATTAGTGGTTTGGCC+AGG - chr7_2:47651826-47651845 None:intergenic 45.0%
TGCATTGGGATAGTGTGACT+TGG - chr7_2:47651857-47651876 None:intergenic 45.0%
AGTGCTAGACCATATGCTAC+CGG + chr7_2:47651889-47651908 Msa1060120:CDS 45.0%
CACAACTGTTGCTGGTATCT+TGG + chr7_2:47651930-47651949 Msa1060120:CDS 45.0%
GCGGAATGATGAGTCTTTGA+TGG - chr7_2:47651967-47651986 None:intergenic 45.0%
GGGAGAGTAGGTTTGAATAG+TGG - chr7_2:47652009-47652028 None:intergenic 45.0%
!! TCATTAAGTGCTGGGAGAGT+AGG - chr7_2:47652021-47652040 None:intergenic 45.0%
TCGAAGAAACTCCGTAGTCT+TGG + chr7_2:47652063-47652082 Msa1060120:CDS 45.0%
ACTTTCTGTGGAACGTTAGC+CGG - chr7_2:47652102-47652121 None:intergenic 45.0%
!! TTTGACAAGGGTTGGTACCA+AGG - chr7_2:47652152-47652171 None:intergenic 45.0%
! TTGGTTGCTTTGACAAGGGT+TGG - chr7_2:47652160-47652179 None:intergenic 45.0%
GGGACTGTTTGGGAAATAAG+GGG - chr7_2:47652301-47652320 None:intergenic 45.0%
ATGGATGCAAGGGACTGTTT+GGG - chr7_2:47652311-47652330 None:intergenic 45.0%
AATGGATGCAAGGGACTGTT+TGG - chr7_2:47652312-47652331 None:intergenic 45.0%
!! TCACCATGGTGTTGTTTGGT+GGG - chr7_2:47652350-47652369 None:intergenic 45.0%
!! TTGCTCACCATGGTGTTGTT+TGG - chr7_2:47652354-47652373 None:intergenic 45.0%
AACAACACCATGGTGAGCAA+CGG + chr7_2:47652354-47652373 Msa1060120:CDS 45.0%
GAGCAACGGAACAAAGGTTA+CGG + chr7_2:47652368-47652387 Msa1060120:CDS 45.0%
AGCTCCACACTTGTGTTGAA+AGG - chr7_2:47652399-47652418 None:intergenic 45.0%
CTGCAAGACACTAGCATTCT+TGG + chr7_2:47652423-47652442 Msa1060120:CDS 45.0%
! AATACAATTGGTGTCCCGTC+TGG + chr7_2:47652567-47652586 Msa1060120:CDS 45.0%
TCCTAGCAGATAATCCAGGT+TGG + chr7_2:47652610-47652629 Msa1060120:intron 45.0%
ACCAACCTGGATTATCTGCT+AGG - chr7_2:47652614-47652633 None:intergenic 45.0%
GAATTGACTAGGAACCAACC+TGG - chr7_2:47652627-47652646 None:intergenic 45.0%
TAATTGTGTGTGCAGGGGTA+TGG + chr7_2:47652718-47652737 Msa1060120:intron 45.0%
TACAAGCTGGGGTCTTAAGA+TGG + chr7_2:47652767-47652786 Msa1060120:CDS 45.0%
! ATGGCATGGATTGTGTTGGA+TGG + chr7_2:47652786-47652805 Msa1060120:CDS 45.0%
TAACACTTGGGAAGATCTGC+TGG - chr7_2:47652843-47652862 None:intergenic 45.0%
!! GGCCCTTTTTGTTATCCAAC+TGG + chr7_2:47652927-47652946 Msa1060120:three_prime_UTR 45.0%
ATGAATAGCAACTGCCCAGT+TGG - chr7_2:47652945-47652964 None:intergenic 45.0%
!!! ATTTTTTTATTTTTACATTT+TGG + chr7_2:47652906-47652925 Msa1060120:three_prime_UTR 5.0%
! GCATTTGAGTTTGCACTGGC+CGG + chr7_2:47650347-47650366 Msa1060120:CDS 50.0%
!! TTGGTAGTGTCTGGTAGTGC+CGG - chr7_2:47650369-47650388 None:intergenic 50.0%
CAAGATTGTGCCACAGGAAG+AGG + chr7_2:47650513-47650532 Msa1060120:CDS 50.0%
ATTGTGCCACAGGAAGAGGA+TGG + chr7_2:47650517-47650536 Msa1060120:CDS 50.0%
ACAGTGAACGGTCAGTTTCC+AGG + chr7_2:47650542-47650561 Msa1060120:CDS 50.0%
GTTTCCAGGACCTCGCATTA+TGG + chr7_2:47650556-47650575 Msa1060120:CDS 50.0%
AGGACCTCGCATTATGGCTA+GGG + chr7_2:47650562-47650581 Msa1060120:CDS 50.0%
!! CTTCAATCAGGATGGGCTGA+TGG + chr7_2:47650759-47650778 Msa1060120:CDS 50.0%
! GGGCATTGTGTCACATATGC+CGG - chr7_2:47650786-47650805 None:intergenic 50.0%
ACACAATGCCCCATCCAAAC+AGG + chr7_2:47650795-47650814 Msa1060120:CDS 50.0%
TTGCAGGGCTTGTGCTATGA+TGG - chr7_2:47651104-47651123 None:intergenic 50.0%
ATAGCACAAGCCCTGCAAAC+TGG + chr7_2:47651106-47651125 Msa1060120:CDS 50.0%
TAGCACAAGCCCTGCAAACT+GGG + chr7_2:47651107-47651126 Msa1060120:CDS 50.0%
GAGCAGTTATACAATGGCCC+TGG - chr7_2:47651175-47651194 None:intergenic 50.0%
!! CGTCGGCTTCAACAACTTTG+AGG - chr7_2:47651759-47651778 None:intergenic 50.0%
AACACCATCCTTATTGCCCC+TGG + chr7_2:47651805-47651824 Msa1060120:CDS 50.0%
GTTGTCAAAAGTTCCCTGGC+CGG - chr7_2:47651911-47651930 None:intergenic 50.0%
TGGAACGTTAGCCGGAAACT+GGG - chr7_2:47652094-47652113 None:intergenic 50.0%
CATTGGGTCCCTGACAAGTT+TGG - chr7_2:47652179-47652198 None:intergenic 50.0%
CAAACTTGTCAGGGACCCAA+TGG + chr7_2:47652177-47652196 Msa1060120:CDS 50.0%
! GATTGAAGAAGTGCGGTGGT+TGG - chr7_2:47652246-47652265 None:intergenic 50.0%
! GTGTGATTGAAGAAGTGCGG+TGG - chr7_2:47652250-47652269 None:intergenic 50.0%
!! CACCATGGTGTTGTTTGGTG+GGG - chr7_2:47652349-47652368 None:intergenic 50.0%
!! CTCACCATGGTGTTGTTTGG+TGG - chr7_2:47652351-47652370 None:intergenic 50.0%
CTTTGTTCCGTTGCTCACCA+TGG - chr7_2:47652364-47652383 None:intergenic 50.0%
CATGGTGAGCAACGGAACAA+AGG + chr7_2:47652362-47652381 Msa1060120:CDS 50.0%
AGTCACCCTGTCCATTTGCA+TGG + chr7_2:47652453-47652472 Msa1060120:CDS 50.0%
ATAGCAACCCATCCACCAGA+CGG - chr7_2:47652585-47652604 None:intergenic 50.0%
CTGTCACCATCCTCTTCCTG+TGG - chr7_2:47650526-47650545 None:intergenic 55.0%
CTAGCCATAATGCGAGGTCC+TGG - chr7_2:47650563-47650582 None:intergenic 55.0%
CAGGACCTCGCATTATGGCT+AGG + chr7_2:47650561-47650580 Msa1060120:CDS 55.0%
CCTTCCCTAGCCATAATGCG+AGG - chr7_2:47650569-47650588 None:intergenic 55.0%
CCTCGCATTATGGCTAGGGA+AGG + chr7_2:47650566-47650585 Msa1060120:CDS 55.0%
!! ATCAGGATGGGCTGATGGAC+CGG + chr7_2:47650764-47650783 Msa1060120:CDS 55.0%
AGCACAAGCCCTGCAAACTG+GGG + chr7_2:47651108-47651127 Msa1060120:CDS 55.0%
TTGGCCAGGGGCAATAAGGA+TGG - chr7_2:47651812-47651831 None:intergenic 55.0%
! TGGTTTGGCCAGGGGCAATA+AGG - chr7_2:47651816-47651835 None:intergenic 55.0%
TAGACCATATGCTACCGGCC+AGG + chr7_2:47651894-47651913 Msa1060120:CDS 55.0%
AGACCATATGCTACCGGCCA+GGG + chr7_2:47651895-47651914 Msa1060120:CDS 55.0%
! ACTGGGCACTGCCAAGACTA+CGG - chr7_2:47652077-47652096 None:intergenic 55.0%
TCTTGGCAGTGCCCAGTTTC+CGG + chr7_2:47652080-47652099 Msa1060120:CDS 55.0%
GTGGAACGTTAGCCGGAAAC+TGG - chr7_2:47652095-47652114 None:intergenic 55.0%
! ATAAGGGGCGTAGACACCCT+TGG - chr7_2:47652286-47652305 None:intergenic 55.0%
!! GGGGTGCCGGTGTAATTGAA+TGG - chr7_2:47652330-47652349 None:intergenic 55.0%
CACCCCACCAAACAACACCA+TGG + chr7_2:47652344-47652363 Msa1060120:CDS 55.0%
! ACAATTGGTGTCCCGTCTGG+TGG + chr7_2:47652570-47652589 Msa1060120:CDS 55.0%
TAGCAACCCATCCACCAGAC+GGG - chr7_2:47652584-47652603 None:intergenic 55.0%
GCTGGGGTCTTAAGATGGCA+TGG + chr7_2:47652772-47652791 Msa1060120:CDS 55.0%
TTGGGAAGATCTGCTGGTGG+TGG - chr7_2:47652837-47652856 None:intergenic 55.0%
CACTTGGGAAGATCTGCTGG+TGG - chr7_2:47652840-47652859 None:intergenic 55.0%
GCACAAGCCCTGCAAACTGG+GGG + chr7_2:47651109-47651128 Msa1060120:CDS 60.0%
TGGTCCTCCCCCAGTTTGCA+GGG - chr7_2:47651119-47651138 None:intergenic 60.0%
TTGGTCCTCCCCCAGTTTGC+AGG - chr7_2:47651120-47651139 None:intergenic 60.0%
GTTCCCTGGCCGGTAGCATA+TGG - chr7_2:47651901-47651920 None:intergenic 60.0%
!! GGTGTTGTTTGGTGGGGTGC+CGG - chr7_2:47652343-47652362 None:intergenic 60.0%
! TTGGTGTCCCGTCTGGTGGA+TGG + chr7_2:47652574-47652593 Msa1060120:CDS 60.0%
! TGGTGTCCCGTCTGGTGGAT+GGG + chr7_2:47652575-47652594 Msa1060120:CDS 60.0%
CAAGCCCTGCAAACTGGGGG+AGG + chr7_2:47651112-47651131 Msa1060120:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 47650194 47653112 47650194 ID=Msa1060120;Name=Msa1060120
chr7_2 mRNA 47650194 47653112 47650194 ID=Msa1060120-mRNA-1;Parent=Msa1060120;Name=Msa1060120-mRNA-1;_AED=0.08;_eAED=0.08;_QI=87|1|1|1|1|1|6|249|580
chr7_2 exon 47650194 47650394 47650194 ID=Msa1060120-mRNA-1:exon:8597;Parent=Msa1060120-mRNA-1
chr7_2 exon 47650494 47650645 47650494 ID=Msa1060120-mRNA-1:exon:8598;Parent=Msa1060120-mRNA-1
chr7_2 exon 47650743 47650987 47650743 ID=Msa1060120-mRNA-1:exon:8599;Parent=Msa1060120-mRNA-1
chr7_2 exon 47651074 47651202 47651074 ID=Msa1060120-mRNA-1:exon:8600;Parent=Msa1060120-mRNA-1
chr7_2 exon 47651656 47652627 47651656 ID=Msa1060120-mRNA-1:exon:8601;Parent=Msa1060120-mRNA-1
chr7_2 exon 47652733 47653112 47652733 ID=Msa1060120-mRNA-1:exon:8602;Parent=Msa1060120-mRNA-1
chr7_2 five_prime_UTR 47650194 47650280 47650194 ID=Msa1060120-mRNA-1:five_prime_utr;Parent=Msa1060120-mRNA-1
chr7_2 CDS 47650281 47650394 47650281 ID=Msa1060120-mRNA-1:cds;Parent=Msa1060120-mRNA-1
chr7_2 CDS 47650494 47650645 47650494 ID=Msa1060120-mRNA-1:cds;Parent=Msa1060120-mRNA-1
chr7_2 CDS 47650743 47650987 47650743 ID=Msa1060120-mRNA-1:cds;Parent=Msa1060120-mRNA-1
chr7_2 CDS 47651074 47651202 47651074 ID=Msa1060120-mRNA-1:cds;Parent=Msa1060120-mRNA-1
chr7_2 CDS 47651656 47652627 47651656 ID=Msa1060120-mRNA-1:cds;Parent=Msa1060120-mRNA-1
chr7_2 CDS 47652733 47652863 47652733 ID=Msa1060120-mRNA-1:cds;Parent=Msa1060120-mRNA-1
chr7_2 three_prime_UTR 47652864 47653112 47652864 ID=Msa1060120-mRNA-1:three_prime_utr;Parent=Msa1060120-mRNA-1
Gene Sequence

>Msa1060120

ATGGCTGTTACCATTTTTTCATCGCCTAAAATTGCAACATTGTTTTTGTCATTGATTAATTTTTGCGCATTTGAGTTTGCACTGGCCGGCACTACCAGACACTACCAATTTGATATAGGGTACCAAAATGTGACAAGATTGTGCCACAGGAAGAGGATGGTGACAGTGAACGGTCAGTTTCCAGGACCTCGCATTATGGCTAGGGAAGGAGACCGTCTTGTTATCAAAGTTGTTAACAATGTGCAAAACAACATCTCGATTCACTGGCACGGCATTCGACAACTTCAATCAGGATGGGCTGATGGACCGGCATATGTGACACAATGCCCCATCCAAACAGGTCAAAGCTATGTTTACAATTACACAATTAAAGGCCAAAGAGGAACACTCTTTTGGCATGCTCATATATCTTGGTTAAGATCAACACTCTATGGTCCTCTCATCATTCTTCCCAAGAAAAATGTTCCATATCCTTTTGCAAAACCCCACAAGGAAGTTCCCATGATATTTGGGGAATGGTTCAATGCAGATACTGAGGCCATCATAGCACAAGCCCTGCAAACTGGGGGAGGACCAAATGTTTCTGAAGCCTACACAATTAATGGACTTCCAGGGCCATTGTATAACTGCTCTAAAAAAGATACATTCAAGCTAAAGGTCAAGCCTGGAAAGACTTACCTTCTACGTTTGATCAACGCTGCACTGAATGATGAGTTGTTCTTCAGCATTGCAAATCACACCCTCAAAGTTGTTGAAGCCGACGCTATTTATGTGAAACCTTTTGAGACTAACACCATCCTTATTGCCCCTGGCCAAACCACTAATGTTCTTCTCAAGACCAAGTCACACTATCCCAATGCAGCCTTCTTAATGAGTGCTAGACCATATGCTACCGGCCAGGGAACTTTTGACAACACAACTGTTGCTGGTATCTTGGAATATGAAATCCCATCAAAGACTCATCATTCCGCTTCTTCACTAAAAAAGCTTCCACTATTCAAACCTACTCTCCCAGCACTTAATGACACTTCTTTTGCAACAAAGTTTTCGAAGAAACTCCGTAGTCTTGGCAGTGCCCAGTTTCCGGCTAACGTTCCACAGAAAGTTGATAAGCACTTTTTCTTCACAGTAAGCCTTGGTACCAACCCTTGTCAAAGCAACCAAACTTGTCAGGGACCCAATGGAACAATGTTTGCAGCATCAGTGAACAACGTATCTTTCACAATGCCAACCACCGCACTTCTTCAATCACACTTTACTGGACAATCCAAGGGTGTCTACGCCCCTTATTTCCCAAACAGTCCCTTGCATCCATTCAATTACACCGGCACCCCACCAAACAACACCATGGTGAGCAACGGAACAAAGGTTACGGTTCTTCCTTTCAACACAAGTGTGGAGCTTGTGCTGCAAGACACTAGCATTCTTGGTGCAGAAAGTCACCCTGTCCATTTGCATGGCTTTAACTTCTTTGTTGTTGGACAAGGATTTGGTAACTACGATTCAAATAAGGACCCAAAAAACTTTAACCTTGTTGATCCTGTTGAAAGGAATACAATTGGTGTCCCGTCTGGTGGATGGGTTGCTATCAGATTCCTAGCAGATAATCCAGGGGTATGGTTCATGCATTGTCACTTGGAAGTACATACAAGCTGGGGTCTTAAGATGGCATGGATTGTGTTGGATGGAAAACTTCCAAATCAAAAGTTACTTCCACCACCAGCAGATCTTCCCAAGTGTTAA
Protein sequence

>Msa1060120

MAVTIFSSPKIATLFLSLINFCAFEFALAGTTRHYQFDIGYQNVTRLCHRKRMVTVNGQFPGPRIMAREGDRLVIKVVNNVQNNISIHWHGIRQLQSGWADGPAYVTQCPIQTGQSYVYNYTIKGQRGTLFWHAHISWLRSTLYGPLIILPKKNVPYPFAKPHKEVPMIFGEWFNADTEAIIAQALQTGGGPNVSEAYTINGLPGPLYNCSKKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHTLKVVEADAIYVKPFETNTILIAPGQTTNVLLKTKSHYPNAAFLMSARPYATGQGTFDNTTVAGILEYEIPSKTHHSASSLKKLPLFKPTLPALNDTSFATKFSKKLRSLGSAQFPANVPQKVDKHFFFTVSLGTNPCQSNQTCQGPNGTMFAASVNNVSFTMPTTALLQSHFTGQSKGVYAPYFPNSPLHPFNYTGTPPNNTMVSNGTKVTVLPFNTSVELVLQDTSILGAESHPVHLHGFNFFVVGQGFGNYDSNKDPKNFNLVDPVERNTIGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVLDGKLPNQKLLPPPADLPKC*