AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1148790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1148790 MtrunA17_Chr7g0237441 97.931 580 12 0 1 580 1 580 0.0 1179
Msa1148790 MtrunA17_Chr7g0237491 88.448 580 67 0 1 580 1 580 0.0 1070
Msa1148790 MtrunA17_Chr7g0238351 86.575 581 77 1 1 580 1 581 0.0 1050
Msa1148790 MtrunA17_Chr7g0238941 70.205 584 164 4 1 580 1 578 0.0 863
Msa1148790 MtrunA17_Chr4g0031901 70.139 576 157 6 1 568 5 573 0.0 840
Msa1148790 MtrunA17_Chr7g0238981 69.088 592 165 4 6 580 3 593 0.0 835
Msa1148790 MtrunA17_Chr4g0005921 57.371 563 226 4 18 580 9 557 0.0 664
Msa1148790 MtrunA17_Chr5g0429511 54.799 573 240 8 9 580 4 558 0.0 658
Msa1148790 MtrunA17_Chr3g0104061 57.401 554 219 6 27 580 20 556 0.0 657
Msa1148790 MtrunA17_Chr5g0404341 56.437 567 225 8 15 580 21 566 0.0 652
Msa1148790 MtrunA17_Chr5g0404361 54.641 571 241 7 11 580 58 611 0.0 644
Msa1148790 MtrunA17_Chr5g0436461 52.197 569 250 9 15 580 5 554 0.0 605
Msa1148790 MtrunA17_Chr5g0437681 49.826 574 270 10 13 580 6 567 0.0 573
Msa1148790 MtrunA17_Chr5g0431581 50.260 577 265 9 9 580 1 560 0.0 558
Msa1148790 MtrunA17_Chr3g0114211 47.521 585 282 11 4 580 3 570 0.0 555
Msa1148790 MtrunA17_Chr2g0278811 44.992 609 293 9 5 580 8 607 0.0 530
Msa1148790 MtrunA17_Chr7g0240971 48.116 584 277 10 9 580 1 570 7.11e-179 517
Msa1148790 MtrunA17_Chr8g0346581 45.552 562 280 10 27 580 28 571 1.80e-173 503
Msa1148790 MtrunA17_Chr7g0240991 43.608 571 301 11 19 580 13 571 8.70e-170 494
Msa1148790 MtrunA17_Chr4g0008521 45.196 562 277 8 34 580 27 572 1.64e-164 481
Msa1148790 MtrunA17_Chr3g0133861 45.245 347 162 9 235 570 1 330 6.68e-88 275
Msa1148790 MtrunA17_Chr8g0382691 32.236 577 318 21 24 567 26 562 8.80e-74 246
Msa1148790 MtrunA17_Chr3g0118321 31.937 573 326 16 11 554 4 541 1.90e-69 234
Msa1148790 MtrunA17_Chr3g0118331 31.107 569 335 17 11 554 4 540 7.26e-66 225
Msa1148790 MtrunA17_Chr3g0133871 45.098 204 106 2 14 212 9 211 1.87e-60 200
Msa1148790 MtrunA17_Chr5g0436431 45.798 238 111 6 303 538 7 228 1.63e-59 197
Msa1148790 MtrunA17_Chr4g0056511 28.250 577 371 18 14 580 6 549 7.07e-50 181
Msa1148790 MtrunA17_Chr3g0079321 25.919 544 365 17 9 545 4 516 5.83e-46 171
Msa1148790 MtrunA17_Chr1g0157341 25.823 577 367 16 17 580 4 532 1.70e-43 163
Msa1148790 MtrunA17_Chr4g0038671 25.800 531 341 14 15 540 10 492 2.84e-41 157
Msa1148790 MtrunA17_Chr3g0143671 24.776 557 357 15 33 580 30 533 7.13e-41 155
Msa1148790 MtrunA17_Chr4g0024861 27.096 513 320 18 33 540 27 490 1.22e-38 149
Msa1148790 MtrunA17_Chr7g0234061 26.729 535 335 21 34 554 30 521 1.26e-37 147
Msa1148790 MtrunA17_Chr3g0121171 26.103 544 352 18 23 556 1159 1662 4.07e-35 142
Msa1148790 MtrunA17_Chr3g0121171 25.368 544 356 17 23 556 584 1087 3.91e-34 139
Msa1148790 MtrunA17_Chr3g0121171 25.475 526 349 16 34 556 27 512 7.43e-34 138
Msa1148790 MtrunA17_Chr3g0121171 24.628 471 312 16 89 556 1798 2228 2.47e-26 115
Msa1148790 MtrunA17_Chr3g0121151 25.368 544 356 17 23 556 49 552 4.53e-35 139
Msa1148790 MtrunA17_Chr4g0043261 25.451 554 334 17 34 568 26 519 5.91e-35 139
Msa1148790 MtrunA17_Chr3g0121161 25.368 544 356 17 23 556 49 552 8.84e-35 139
Msa1148790 MtrunA17_Chr2g0322441 26.121 513 325 16 33 540 30 493 3.25e-34 136
Msa1148790 MtrunA17_Chr5g0402831 24.549 554 348 17 33 571 31 529 1.13e-32 132
Msa1148790 MtrunA17_Chr4g0043251 24.808 520 326 16 51 556 45 513 7.43e-31 126
Msa1148790 MtrunA17_Chr8g0374261 24.861 539 340 19 19 546 13 497 9.66e-31 126
Msa1148790 MtrunA17_Chr8g0374271 24.125 514 333 17 33 540 31 493 3.21e-30 124
Msa1148790 MtrunA17_Chr4g0075071 25.891 533 346 14 11 540 8 494 1.03e-29 123
Msa1148790 MtrunA17_Chr3g0118351 32.132 333 178 11 245 554 5 312 7.26e-28 114
Msa1148790 MtrunA17_Chr3g0118341 39.073 151 89 3 11 159 4 153 9.17e-28 110
Msa1148790 MtrunA17_Chr4g0024641 23.974 463 295 17 85 540 1 413 3.73e-20 95.1
Msa1148790 MtrunA17_Chr1g0197301 27.717 368 214 14 223 580 4 329 1.63e-19 90.1
Msa1148790 MtrunA17_Chr5g0436411 44.444 63 35 0 26 88 17 79 2.32e-14 68.6
Msa1148790 MtrunA17_Chr3g0118931 39.560 91 50 2 490 580 10 95 3.92e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1148790 AT5G60020.1 79.376 577 112 4 11 580 1 577 0.0 957
Msa1148790 AT5G60020.3 82.353 544 91 3 42 580 2 545 0.0 943
Msa1148790 AT5G60020.2 78.692 535 107 4 11 538 1 535 0.0 871
Msa1148790 AT2G29130.1 70.275 582 162 5 1 580 1 573 0.0 860
Msa1148790 AT2G38080.1 57.672 567 223 7 15 580 8 558 0.0 666
Msa1148790 AT5G03260.1 55.282 568 235 8 14 580 8 557 0.0 640
Msa1148790 AT5G58910.2 55.455 550 231 7 33 580 30 567 0.0 635
Msa1148790 AT5G58910.3 55.455 550 230 8 33 580 30 566 0.0 631
Msa1148790 AT1G18140.1 53.036 560 252 5 29 580 25 581 0.0 626
Msa1148790 AT5G01190.1 54.321 567 243 5 15 580 7 558 0.0 618
Msa1148790 AT5G58910.1 54.630 540 224 8 43 580 3 523 0.0 603
Msa1148790 AT5G01190.2 53.616 567 233 6 15 580 7 544 0.0 597
Msa1148790 AT2G40370.1 49.654 578 272 11 15 580 10 580 0.0 567
Msa1148790 AT2G30210.1 49.737 571 273 10 15 580 9 570 0.0 566
Msa1148790 AT5G05390.1 48.696 575 270 10 15 580 7 565 0.0 551
Msa1148790 AT5G09360.1 45.172 580 295 11 4 580 10 569 0.0 541
Msa1148790 AT5G07130.1 47.496 579 284 11 10 580 3 569 0.0 528
Msa1148790 AT2G46570.1 42.784 589 303 12 6 580 1 569 2.40e-174 506
Msa1148790 AT3G09220.1 46.112 553 279 6 17 563 11 550 6.25e-170 494
Msa1148790 AT5G48100.1 43.850 561 298 9 15 570 5 553 2.54e-163 478
Msa1148790 AT5G01040.1 42.857 574 300 9 15 580 13 566 2.37e-159 468
Msa1148790 AT5G01050.1 43.056 576 298 10 15 580 13 568 3.37e-158 465
Msa1148790 AT5G07130.2 47.870 493 241 9 95 580 1 484 1.90e-156 457
Msa1148790 AT5G07130.3 47.870 493 241 9 95 580 1 484 1.90e-156 457
Msa1148790 AT2G46570.2 42.914 501 256 10 90 580 4 484 2.95e-149 439
Msa1148790 AT3G09220.2 46.983 464 228 5 106 563 2 453 2.15e-142 421
Msa1148790 AT5G21105.1 32.496 597 337 19 6 570 11 573 6.05e-75 249
Msa1148790 AT4G39830.1 30.912 592 340 20 16 572 14 571 2.66e-72 243
Msa1148790 AT5G21100.1 33.099 568 309 20 23 559 15 542 3.98e-72 242
Msa1148790 AT5G21105.3 32.206 562 318 18 6 538 11 538 8.57e-66 224
Msa1148790 AT4G39830.2 30.512 508 290 18 94 572 3 476 5.68e-50 180
Msa1148790 AT4G39830.3 30.616 503 286 18 99 572 6 474 2.35e-49 178
Msa1148790 AT1G75790.1 27.495 531 335 17 16 540 9 495 6.89e-48 176
Msa1148790 AT4G12420.1 27.091 550 355 17 15 554 6 519 3.92e-47 174
Msa1148790 AT4G12420.2 27.091 550 355 17 15 554 6 519 3.92e-47 174
Msa1148790 AT4G39830.4 29.586 507 283 17 94 572 3 463 1.89e-46 170
Msa1148790 AT1G21860.1 25.323 541 353 13 8 546 5 496 6.04e-44 164
Msa1148790 AT5G48450.2 27.941 544 344 22 17 554 12 513 1.09e-43 164
Msa1148790 AT5G48450.1 27.941 544 344 22 17 554 12 513 2.23e-43 164
Msa1148790 AT1G21850.1 26.015 542 348 16 8 546 5 496 1.79e-42 160
Msa1148790 AT1G76160.1 25.411 547 357 16 12 556 9 506 3.62e-42 159
Msa1148790 AT4G25240.2 25.907 579 384 18 11 580 8 550 7.32e-42 159
Msa1148790 AT4G25240.1 25.907 579 384 18 11 580 8 550 7.32e-42 159
Msa1148790 AT5G21105.2 34.349 361 200 12 218 570 51 382 2.46e-41 154
Msa1148790 AT1G41830.1 24.126 572 376 17 17 580 10 531 8.44e-41 155
Msa1148790 AT5G51480.1 25.314 557 369 21 35 580 30 550 9.55e-41 156
Msa1148790 AT4G22010.1 25.632 554 357 19 33 580 26 530 2.14e-37 146
Msa1148790 AT4G28090.1 23.845 541 355 17 14 546 9 500 4.50e-37 145
Msa1148790 AT5G66920.1 24.545 550 365 16 33 580 37 538 7.74e-36 141
Msa1148790 AT1G55570.1 25.636 511 336 15 34 540 30 500 1.21e-33 135
Msa1148790 AT3G13390.1 25.145 517 331 12 34 540 29 499 2.74e-33 134
Msa1148790 AT4G38420.1 24.319 514 339 17 33 540 30 499 1.06e-32 132
Msa1148790 AT1G55560.1 24.361 509 342 12 35 540 28 496 6.91e-32 130
Msa1148790 AT4G37160.1 23.143 579 392 13 7 580 4 534 3.57e-31 128
Msa1148790 AT3G13400.2 23.352 531 363 14 15 540 6 497 1.84e-29 123
Msa1148790 AT3G13400.1 23.352 531 363 14 15 540 6 497 1.84e-29 123
Msa1148790 AT4G38420.3 23.992 496 327 17 33 522 30 481 1.22e-28 120
Msa1148790 AT4G38420.2 29.150 247 165 5 33 278 30 267 7.86e-27 114
Msa1148790 AT2G23630.2 24.094 552 362 14 35 580 37 537 3.23e-25 110
Msa1148790 AT2G23630.1 24.094 552 362 14 35 580 32 532 4.51e-25 109
Msa1148790 AT4G37160.2 24.828 290 206 4 7 294 4 283 3.39e-23 103

Find 167 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTACAATTACACAATTAA+AGG 0.195877 7_4:+29301521 Msa1148790:CDS
TCTGAAGCCTACACAATTAA+TGG 0.196711 7_4:+29301836 Msa1148790:CDS
GGCACAATCTTGTCACATTT+TGG 0.201219 7_4:-29301195 None:intergenic
TTTGACAACACAACTGTTAC+TGG 0.231310 7_4:+29302609 Msa1148790:CDS
CTTCTTCAATCACACTTTAC+TGG 0.235780 7_4:+29302942 Msa1148790:CDS
TCTTGGCAGTGCCCAGTTTC+CGG 0.239305 7_4:+29302767 Msa1148790:CDS
AAGGAAGTTCCCATGATATT+TGG 0.245470 7_4:+29301659 Msa1148790:CDS
AAGGGACTGTTTGGGAAATA+AGG 0.252706 7_4:-29302987 None:intergenic
GGCTTTAACTTCTTTGTTGT+TGG 0.273389 7_4:+29303161 Msa1148790:CDS
TGCCCAGTTGGATAACAAAA+AGG 0.275690 7_4:-29303607 None:intergenic
AGAGATTTATTTATACAATA+TGG 0.277397 7_4:+29303724 Msa1148790:three_prime_UTR
CTGCAAGACACTAGCATTCT+TGG 0.313661 7_4:+29303110 Msa1148790:CDS
TGGTAACTACGATTCAAATA+AGG 0.314009 7_4:+29303193 Msa1148790:CDS
GCCAAAAGAGTGTTCCTCTT+TGG 0.315527 7_4:-29301544 None:intergenic
GTGGAACGTTAGCCGGAAAC+TGG 0.316439 7_4:-29302779 None:intergenic
TTCAAGGAAGTACATCAAAT+TGG 0.316469 7_4:-29301078 None:intergenic
GCCAAAGAGGAACACTCTTT+TGG 0.325478 7_4:+29301543 Msa1148790:CDS
TTTGTTGTTGGACAAGGATT+TGG 0.332895 7_4:+29303173 Msa1148790:CDS
CATTGGGTCCCTGACAAGTT+TGG 0.333389 7_4:-29302863 None:intergenic
TAAGATGGCATGGATTGTTT+TGG 0.335388 7_4:+29303469 Msa1148790:CDS
AAACATAGCTTTGACCTGTT+TGG 0.349503 7_4:-29301502 None:intergenic
GTTTCCAGGACCTCGCATTA+TGG 0.352691 7_4:+29301249 Msa1148790:CDS
TACACAATTAATGGACTTCC+AGG 0.359750 7_4:+29301845 Msa1148790:CDS
TGGTTTGGCCAGGGGCAATA+AGG 0.361266 7_4:-29302500 None:intergenic
TGGATGGGATTTCATATTCC+AGG 0.374060 7_4:-29302635 None:intergenic
TTTGGCATGCTCATATATCT+TGG 0.375615 7_4:+29301561 Msa1148790:CDS
CGTAGAAGGTAAGTCTTTCC+AGG 0.379445 7_4:-29302366 None:intergenic
AATGGATGCAAGGGACTGTT+TGG 0.382635 7_4:-29302996 None:intergenic
GAGTTTGAACTGTGAGTTGA+TGG 0.387802 7_4:-29300896 None:intergenic
AGGGACTGTTTGGGAAATAA+GGG 0.397523 7_4:-29302986 None:intergenic
TGAGAAGAACATTAGTGGTT+TGG 0.400081 7_4:-29302515 None:intergenic
TAATTGTGTGTGCAGGAGTA+TGG 0.401626 7_4:+29303405 Msa1148790:intron
CACAACTGTTACTGGTATCC+TGG 0.402545 7_4:+29302617 Msa1148790:CDS
ATAGCACAAGCCCTTCAAAC+TGG 0.407400 7_4:+29301797 Msa1148790:CDS
CTCATTAAGAATGCCGCATT+GGG 0.409381 7_4:-29302555 None:intergenic
TGGTTAAGATCAACACTCTA+TGG 0.410307 7_4:+29301581 Msa1148790:CDS
ACAGTGAACGGTCAGTTTCC+AGG 0.413798 7_4:+29301235 Msa1148790:CDS
AACTTCATTACCAAATATCA+TGG 0.417572 7_4:-29301669 None:intergenic
TCAAAGCAACCAAACTTGTC+AGG 0.420571 7_4:+29302854 Msa1148790:CDS
TTGCTCACCATGGTGTTGTT+TGG 0.428117 7_4:-29303038 None:intergenic
TTGAAGGGCTTGTGCTATGA+TGG 0.431515 7_4:-29301792 None:intergenic
CTCACCATGGTGTTGTTTGG+TGG 0.438016 7_4:-29303035 None:intergenic
GTGTAGGCTTCAGAAACATT+TGG 0.443091 7_4:-29301827 None:intergenic
CGTCAGCTTCAACAACTTTG+AGG 0.448670 7_4:-29302443 None:intergenic
ATCGGGATGGGCTGATGGAC+CGG 0.451746 7_4:+29301457 Msa1148790:CDS
TGGCATTCGACAACTTCAAT+CGG 0.454278 7_4:+29301439 Msa1148790:CDS
GCATTTGAGCTTGCAATGGC+CGG 0.454548 7_4:+29301040 Msa1148790:CDS
AACACGATTGGTGTCCCATC+TGG 0.454571 7_4:+29303254 Msa1148790:CDS
TACAGATACATTCAAGCTAA+AGG 0.455145 7_4:+29302338 Msa1148790:intron
AAAACAACATCTCGATTCAT+TGG 0.455822 7_4:+29301317 Msa1148790:CDS
GTTCCCTGGCCGGTAGCATA+TGG 0.460544 7_4:-29302585 None:intergenic
CTTGGAAGTACATACAAGTT+GGG 0.464129 7_4:+29303442 Msa1148790:CDS
TCACCATGGTGTTGTTTGGT+GGG 0.464819 7_4:-29303034 None:intergenic
AGGATGGTGTTAGTCTCAAA+AGG 0.465017 7_4:-29302480 None:intergenic
AGAACATTAGTGGTTTGGCC+AGG 0.466664 7_4:-29302510 None:intergenic
GGTCTTGAGAAGAACATTAG+TGG 0.469300 7_4:-29302520 None:intergenic
CAGCGTTGATCAAACGTAGA+AGG 0.469718 7_4:-29302380 None:intergenic
ACTTTCTGTGGAACGTTAGC+CGG 0.470540 7_4:-29302786 None:intergenic
AGCTTTGACCTGTTTGGATA+GGG 0.473589 7_4:-29301496 None:intergenic
CAAGTTTGGTTGCTTTGACA+AGG 0.474522 7_4:-29302849 None:intergenic
CTTCAATCGGGATGGGCTGA+TGG 0.474574 7_4:+29301452 Msa1148790:CDS
TACATCAAATTGGTAGTGTC+TGG 0.475328 7_4:-29301068 None:intergenic
TGCTGCAAACATTGTTCCAT+TGG 0.477184 7_4:-29302880 None:intergenic
CTAGCCATAATGCGAGGTCC+TGG 0.477886 7_4:-29301253 None:intergenic
AAAGAAGTGTCATTAAGTGC+TGG 0.478611 7_4:-29302714 None:intergenic
GTCAGCTTCAACAACTTTGA+GGG 0.479362 7_4:-29302442 None:intergenic
TAGCTTTGACCTGTTTGGAT+AGG 0.482427 7_4:-29301497 None:intergenic
AACTTCTTTGTTGTTGGACA+AGG 0.483301 7_4:+29303167 Msa1148790:CDS
ACTCAATGCCCTATCCAAAC+AGG 0.485770 7_4:+29301488 Msa1148790:CDS
AGAAGTTAAAGCCATGCAAA+TGG 0.489593 7_4:-29303151 None:intergenic
GGGAGAGTAGGTTTGAATAG+TGG 0.491888 7_4:-29302693 None:intergenic
CTGTCACCATCCTCTTGTTG+TGG 0.500041 7_4:-29301216 None:intergenic
ATGAATAACAACTGCCCAGT+TGG 0.501908 7_4:-29303619 None:intergenic
GAGCAGTTATACAATGGCCC+TGG 0.502633 7_4:-29301863 None:intergenic
TATCATGGGAACTTCCTTGT+GGG 0.505192 7_4:-29301654 None:intergenic
TTGGTGTCCCATCTGGTGGA+TGG 0.506335 7_4:+29303261 Msa1148790:CDS
TCGAAGAAACTCCGTAGTCT+TGG 0.509213 7_4:+29302750 Msa1148790:CDS
ACTCATTAAGAATGCCGCAT+TGG 0.510221 7_4:-29302556 None:intergenic
TTCAAGCTAAAGGTCAAGCC+TGG 0.511697 7_4:+29302348 Msa1148790:CDS
GAACATTAGTGGTTTGGCCA+GGG 0.511967 7_4:-29302509 None:intergenic
TTGGTTGCTTTGACAAGGGT+TGG 0.514248 7_4:-29302844 None:intergenic
TAACACTTGGGAAGATCAGC+TGG 0.519647 7_4:-29303527 None:intergenic
TAGCACAAGCCCTTCAAACT+GGG 0.520763 7_4:+29301798 Msa1148790:CDS
ACACTTTACTGGACAATCCA+AGG 0.522053 7_4:+29302953 Msa1148790:CDS
GCTGCAAACATTGTTCCATT+GGG 0.522090 7_4:-29302879 None:intergenic
TTGCGCATTTGAGCTTGCAA+TGG 0.524285 7_4:+29301036 Msa1148790:CDS
ATGGATGCAAGGGACTGTTT+GGG 0.525250 7_4:-29302995 None:intergenic
TTGGTAGTGTCTGGTAGTGC+CGG 0.526075 7_4:-29301059 None:intergenic
CGCATTGGGATAGTGAGACT+TGG 0.526166 7_4:-29302541 None:intergenic
ACTTGGAAGTACATACAAGT+TGG 0.526801 7_4:+29303441 Msa1148790:CDS
AACACCATCCTTATTGCCCC+TGG 0.528777 7_4:+29302492 Msa1148790:CDS
ATGGTTCATGCATTGTCACT+TGG 0.529655 7_4:+29303424 Msa1148790:CDS
TCATTAAGTGCTGGGAGAGT+AGG 0.529980 7_4:-29302705 None:intergenic
TACAAGTTGGGGTCTTAAGA+TGG 0.531380 7_4:+29303454 Msa1148790:CDS
AAGAAGTGTCATTAAGTGCT+GGG 0.532392 7_4:-29302713 None:intergenic
CACCATGGTGTTGTTTGGTG+GGG 0.534985 7_4:-29303033 None:intergenic
CAAGATTGTGCCACAACAAG+AGG 0.537997 7_4:+29301206 Msa1148790:CDS
AAGTTTGGTTGCTTTGACAA+GGG 0.538040 7_4:-29302848 None:intergenic
TTCGACAACTTCAATCGGGA+TGG 0.539086 7_4:+29301444 Msa1148790:CDS
GGCATTCGACAACTTCAATC+GGG 0.539404 7_4:+29301440 Msa1148790:CDS
AGAAGCTGAATGATGAGTAT+TGG 0.542145 7_4:-29302655 None:intergenic
TTGGGAAGATCAGCTGGTGG+TGG 0.542541 7_4:-29303521 None:intergenic
ATAAGGGGCGTAGACACCCT+TGG 0.547982 7_4:-29302970 None:intergenic
AGCTCCACACTTGTGTTGAA+AGG 0.548871 7_4:-29303083 None:intergenic
AAGTGCTTATCAACTTTCTG+TGG 0.551982 7_4:-29302798 None:intergenic
TTGTGTTGTCAAAAGTTCCC+TGG 0.552350 7_4:-29302599 None:intergenic
TGGTGTCCCATCTGGTGGAT+GGG 0.552967 7_4:+29303262 Msa1148790:CDS
CCAATCGTGTTTCTCTCGAC+AGG 0.552990 7_4:-29303242 None:intergenic
TGGAAGTCCATTAATTGTGT+AGG 0.560908 7_4:-29301843 None:intergenic
AACATTAGTGGTTTGGCCAG+GGG 0.564171 7_4:-29302508 None:intergenic
AGTCACCCTCTCCATTTGCA+TGG 0.564575 7_4:+29303140 Msa1148790:CDS
TTTGACAAGGGTTGGTACCA+AGG 0.568017 7_4:-29302836 None:intergenic
TTGGCCAGGGGCAATAAGGA+TGG 0.568368 7_4:-29302496 None:intergenic
GTTGGGGTCTTAAGATGGCA+TGG 0.569064 7_4:+29303459 Msa1148790:CDS
GGGGTGCCAGTGTAATTGAA+TGG 0.569951 7_4:-29303014 None:intergenic
CTTTGTTCCGTTGCTCACCA+TGG 0.570394 7_4:-29303048 None:intergenic
TTCTTGGGAAGAATGATGAG+AGG 0.570952 7_4:-29301605 None:intergenic
GGGCATTGAGTCACATATGC+CGG 0.574468 7_4:-29301476 None:intergenic
GAGCAACGGAACAAAGGTTA+CGG 0.576807 7_4:+29303055 Msa1148790:CDS
TAGACCATATGCTACCGGCC+AGG 0.578944 7_4:+29302581 Msa1148790:CDS
CAAACTTGTCAGGGACCCAA+TGG 0.579816 7_4:+29302864 Msa1148790:CDS
TTAAAGCCATGCAAATGGAG+AGG 0.581728 7_4:-29303146 None:intergenic
GTTGTCAAAAGTTCCCTGGC+CGG 0.582928 7_4:-29302595 None:intergenic
TGGAACGTTAGCCGGAAACT+GGG 0.583850 7_4:-29302778 None:intergenic
AAGAGGATGGTGACAGTGAA+CGG 0.583975 7_4:+29301223 Msa1148790:CDS
TACACAATTAAAGGCCAAAG+AGG 0.584584 7_4:+29301530 Msa1148790:CDS
ACTGGGCACTGCCAAGACTA+CGG 0.584704 7_4:-29302761 None:intergenic
TCTTCCTTTCAACACAAGTG+TGG 0.589113 7_4:+29303079 Msa1148790:CDS
AACAACACCATGGTGAGCAA+CGG 0.589304 7_4:+29303041 Msa1148790:CDS
TTGCATCCATTCAATTACAC+TGG 0.590583 7_4:+29303008 Msa1148790:CDS
ACCAACCTGGATTATCTGCT+AGG 0.591178 7_4:-29303298 None:intergenic
TCGACAACTTCAATCGGGAT+GGG 0.595443 7_4:+29301445 Msa1148790:CDS
AGACCATATGCTACCGGCCA+GGG 0.596614 7_4:+29302582 Msa1148790:CDS
ATCATGGGAACTTCCTTGTG+GGG 0.597762 7_4:-29301653 None:intergenic
GCTGAATGATGAGTATTGGA+TGG 0.604474 7_4:-29302651 None:intergenic
AGATTCCTAGCAGATAATCC+AGG 0.604726 7_4:+29303293 Msa1148790:CDS
CCTCGCATTATGGCTAGAGA+AGG 0.607407 7_4:+29301259 Msa1148790:CDS
ACTTCATTACCAAATATCAT+GGG 0.608410 7_4:-29301668 None:intergenic
CATGGTGAGCAACGGAACAA+AGG 0.608494 7_4:+29303049 Msa1148790:CDS
TTATGTTGAGGTTAACACTT+GGG 0.608905 7_4:-29303539 None:intergenic
GTGTAATTGAATGGATGCAA+GGG 0.609529 7_4:-29303005 None:intergenic
TAAAGCCATGCAAATGGAGA+GGG 0.609814 7_4:-29303145 None:intergenic
ATAGCAACCCATCCACCAGA+TGG 0.612970 7_4:-29303269 None:intergenic
AGTGCTAGACCATATGCTAC+CGG 0.615170 7_4:+29302576 Msa1148790:CDS
GATTGAAGAAGTGCGGTGGT+TGG 0.616158 7_4:-29302930 None:intergenic
CAAAGCAACCAAACTTGTCA+GGG 0.619064 7_4:+29302855 Msa1148790:CDS
TAGCAACCCATCCACCAGAT+GGG 0.626005 7_4:-29303268 None:intergenic
CTGAATGATGAGTATTGGAT+GGG 0.630304 7_4:-29302650 None:intergenic
TTTATGTTGAGGTTAACACT+TGG 0.630495 7_4:-29303540 None:intergenic
TTGGAAGTACATACAAGTTG+GGG 0.638295 7_4:+29303443 Msa1148790:CDS
AGCACAAGCCCTTCAAACTG+GGG 0.640956 7_4:+29301799 Msa1148790:CDS
GGGACTGTTTGGGAAATAAG+GGG 0.641737 7_4:-29302985 None:intergenic
AGATCGTCTTGTTATCAAAG+TGG 0.647826 7_4:+29301282 Msa1148790:CDS
ATATCATGGGAACTTCCTTG+TGG 0.653096 7_4:-29301655 None:intergenic
ATTGTGCCACAACAAGAGGA+TGG 0.654518 7_4:+29301210 Msa1148790:CDS
CACTTTACTGGACAATCCAA+GGG 0.654690 7_4:+29302954 Msa1148790:CDS
ACGATTGGTGTCCCATCTGG+TGG 0.655149 7_4:+29303257 Msa1148790:CDS
CCTGTCGAGAGAAACACGAT+TGG 0.656045 7_4:+29303242 Msa1148790:CDS
ACACAATTAATGGACTTCCA+GGG 0.662456 7_4:+29301846 Msa1148790:CDS
AGTGTAATTGAATGGATGCA+AGG 0.671767 7_4:-29303006 None:intergenic
GCACAAGCCCTTCAAACTGG+GGG 0.674569 7_4:+29301800 Msa1148790:CDS
CACCCCACCAAACAACACCA+TGG 0.677039 7_4:+29303031 Msa1148790:CDS
CACTTGGGAAGATCAGCTGG+TGG 0.691975 7_4:-29303524 None:intergenic
CCTTCTCTAGCCATAATGCG+AGG 0.707124 7_4:-29301259 None:intergenic
GTGTGATTGAAGAAGTGCGG+TGG 0.708370 7_4:-29302934 None:intergenic
AAAGTGTGATTGAAGAAGTG+CGG 0.738535 7_4:-29302937 None:intergenic
CAAGTCTCACTATCCCAATG+CGG 0.770855 7_4:+29302542 Msa1148790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGCTTATGTAAATATAATAT+GGG - chr7_4:29301718-29301737 None:intergenic 15.0%
!! TAGCTTATGTAAATATAATA+TGG - chr7_4:29301719-29301738 None:intergenic 15.0%
!!! CTAATTATACTCTTTAATTT+TGG + chr7_4:29301736-29301755 Msa1148790:intron 15.0%
!!! TTTTATGTAATGGTTTTTTA+AGG + chr7_4:29303658-29303677 Msa1148790:three_prime_UTR 15.0%
!! AGAGATTTATTTATACAATA+TGG + chr7_4:29303724-29303743 Msa1148790:three_prime_UTR 15.0%
!!! AATTTTAAGCGATGAAAAAA+TGG - chr7_4:29300987-29301006 None:intergenic 20.0%
!! AAAGCGTAATAAATATTTCA+AGG - chr7_4:29301097-29301116 None:intergenic 20.0%
!!! TTTTGTTTCTTTTATTACTC+TGG + chr7_4:29301137-29301156 Msa1148790:intron 20.0%
!! GTTTACAATTACACAATTAA+AGG + chr7_4:29301521-29301540 Msa1148790:CDS 20.0%
!!! TACTCTTTAATTTTGGTTTT+AGG + chr7_4:29301743-29301762 Msa1148790:intron 20.0%
!!! TCAACAAGATTAAAGTTTTT+GGG - chr7_4:29303221-29303240 None:intergenic 20.0%
!!! ATCAACAAGATTAAAGTTTT+TGG - chr7_4:29303222-29303241 None:intergenic 20.0%
!!! CTTTAGTTTCTTTTATGTAA+TGG + chr7_4:29303648-29303667 Msa1148790:three_prime_UTR 20.0%
!!! GTTACATATTTTTCTTTCTT+TGG + chr7_4:29303698-29303717 Msa1148790:three_prime_UTR 20.0%
! AATGTAACGTGTAAAAAACT+TGG + chr7_4:29301398-29301417 Msa1148790:intron 25.0%
! ACTTCATTACCAAATATCAT+GGG - chr7_4:29301671-29301690 None:intergenic 25.0%
! AACTTCATTACCAAATATCA+TGG - chr7_4:29301672-29301691 None:intergenic 25.0%
! AATATAATATGGGAAGACTT+AGG - chr7_4:29301708-29301727 None:intergenic 25.0%
!!! TAATTTTGGTTTTAGGAGAA+TGG + chr7_4:29301750-29301769 Msa1148790:intron 25.0%
!!! TTTTTAGAGCAGTTATACAA+TGG - chr7_4:29301872-29301891 None:intergenic 25.0%
!!! TTGTATAACTGCTCTAAAAA+AGG + chr7_4:29301872-29301891 Msa1148790:CDS 25.0%
! TGCAGATAAATATATCTTCT+AGG + chr7_4:29301902-29301921 Msa1148790:intron 25.0%
!! CCTCAATCTTTTAATAATTG+GGG - chr7_4:29301934-29301953 None:intergenic 25.0%
!! GCCTCAATCTTTTAATAATT+GGG - chr7_4:29301935-29301954 None:intergenic 25.0%
!! TGCCTCAATCTTTTAATAAT+TGG - chr7_4:29301936-29301955 None:intergenic 25.0%
!! GGCTTCATATTATCAATTTT+AGG - chr7_4:29301966-29301985 None:intergenic 25.0%
! AACAAGTACAATTTCACATA+CGG - chr7_4:29302045-29302064 None:intergenic 25.0%
!! CAACAAGATTAAAGTTTTTG+GGG - chr7_4:29303220-29303239 None:intergenic 25.0%
!! AAAGAAGCAATTTTATGTTG+AGG - chr7_4:29303554-29303573 None:intergenic 25.0%
!! GAAATTTTCACTCAAATCAA+TGG - chr7_4:29303770-29303789 None:intergenic 25.0%
ACTCATTCAGAGAGAAAAAA+TGG + chr7_4:29300955-29300974 Msa1148790:exon 30.0%
! TTCAAGGAAGTACATCAAAT+TGG - chr7_4:29301081-29301100 None:intergenic 30.0%
AAAACAACATCTCGATTCAT+TGG + chr7_4:29301317-29301336 Msa1148790:CDS 30.0%
!! AACTTGGCTATCTTTGAAAT+AGG + chr7_4:29301414-29301433 Msa1148790:intron 30.0%
! GGATATGGAACATTTTTCTT+GGG - chr7_4:29301623-29301642 None:intergenic 30.0%
! AGGATATGGAACATTTTTCT+TGG - chr7_4:29301624-29301643 None:intergenic 30.0%
CCCCAATTATTAAAAGATTG+AGG + chr7_4:29301931-29301950 Msa1148790:intron 30.0%
! CCAATTTTTGTATTTGCTCT+TGG - chr7_4:29302204-29302223 None:intergenic 30.0%
CCAAGAGCAAATACAAAAAT+TGG + chr7_4:29302201-29302220 Msa1148790:intron 30.0%
CTATATGCTTTCGTAGAAAT+TGG - chr7_4:29302260-29302279 None:intergenic 30.0%
ATGAAACGTTATCAGCAATA+TGG + chr7_4:29302288-29302307 Msa1148790:intron 30.0%
TACAGATACATTCAAGCTAA+AGG + chr7_4:29302338-29302357 Msa1148790:intron 30.0%
TGGTAACTACGATTCAAATA+AGG + chr7_4:29303193-29303212 Msa1148790:CDS 30.0%
GATAGTTTGATGAATTGACT+AGG - chr7_4:29303325-29303344 None:intergenic 30.0%
TTATGTTGAGGTTAACACTT+GGG - chr7_4:29303542-29303561 None:intergenic 30.0%
TTTATGTTGAGGTTAACACT+TGG - chr7_4:29303543-29303562 None:intergenic 30.0%
!! TACATCAAATTGGTAGTGTC+TGG - chr7_4:29301071-29301090 None:intergenic 35.0%
TACTCTGGTTGTAACATATG+AGG + chr7_4:29301152-29301171 Msa1148790:intron 35.0%
! AGATCGTCTTGTTATCAAAG+TGG + chr7_4:29301282-29301301 Msa1148790:CDS 35.0%
!! AAACATAGCTTTGACCTGTT+TGG - chr7_4:29301505-29301524 None:intergenic 35.0%
TACACAATTAAAGGCCAAAG+AGG + chr7_4:29301530-29301549 Msa1148790:CDS 35.0%
TTTGGCATGCTCATATATCT+TGG + chr7_4:29301561-29301580 Msa1148790:CDS 35.0%
TGGTTAAGATCAACACTCTA+TGG + chr7_4:29301581-29301600 Msa1148790:CDS 35.0%
AAGGAAGTTCCCATGATATT+TGG + chr7_4:29301659-29301678 Msa1148790:CDS 35.0%
! TCTGAAGCCTACACAATTAA+TGG + chr7_4:29301836-29301855 Msa1148790:CDS 35.0%
TGGAAGTCCATTAATTGTGT+AGG - chr7_4:29301846-29301865 None:intergenic 35.0%
!! TACACAATTAATGGACTTCC+AGG + chr7_4:29301845-29301864 Msa1148790:CDS 35.0%
!! ACACAATTAATGGACTTCCA+GGG + chr7_4:29301846-29301865 Msa1148790:CDS 35.0%
ATACTGAGTAGTGACGTATA+AGG - chr7_4:29301987-29302006 None:intergenic 35.0%
TATTTGCTCTTGGTTCAAAG+TGG - chr7_4:29302194-29302213 None:intergenic 35.0%
TGAGAAGAACATTAGTGGTT+TGG - chr7_4:29302518-29302537 None:intergenic 35.0%
TTTGACAACACAACTGTTAC+TGG + chr7_4:29302609-29302628 Msa1148790:CDS 35.0%
!! CTGAATGATGAGTATTGGAT+GGG - chr7_4:29302653-29302672 None:intergenic 35.0%
AGAAGCTGAATGATGAGTAT+TGG - chr7_4:29302658-29302677 None:intergenic 35.0%
!! AAGAAGTGTCATTAAGTGCT+GGG - chr7_4:29302716-29302735 None:intergenic 35.0%
!! AAAGAAGTGTCATTAAGTGC+TGG - chr7_4:29302717-29302736 None:intergenic 35.0%
AAGTGCTTATCAACTTTCTG+TGG - chr7_4:29302801-29302820 None:intergenic 35.0%
! TTTTTCTTCACAGTAAGCCT+TGG + chr7_4:29302819-29302838 Msa1148790:CDS 35.0%
! AAGTTTGGTTGCTTTGACAA+GGG - chr7_4:29302851-29302870 None:intergenic 35.0%
AAAGTGTGATTGAAGAAGTG+CGG - chr7_4:29302940-29302959 None:intergenic 35.0%
CTTCTTCAATCACACTTTAC+TGG + chr7_4:29302942-29302961 Msa1148790:CDS 35.0%
GTGTAATTGAATGGATGCAA+GGG - chr7_4:29303008-29303027 None:intergenic 35.0%
AGTGTAATTGAATGGATGCA+AGG - chr7_4:29303009-29303028 None:intergenic 35.0%
TTGCATCCATTCAATTACAC+TGG + chr7_4:29303008-29303027 Msa1148790:CDS 35.0%
AGAAGTTAAAGCCATGCAAA+TGG - chr7_4:29303154-29303173 None:intergenic 35.0%
! GGCTTTAACTTCTTTGTTGT+TGG + chr7_4:29303161-29303180 Msa1148790:CDS 35.0%
!! AACTTCTTTGTTGTTGGACA+AGG + chr7_4:29303167-29303186 Msa1148790:CDS 35.0%
!! TTTGTTGTTGGACAAGGATT+TGG + chr7_4:29303173-29303192 Msa1148790:CDS 35.0%
AAATGTCTAATTGTGTGTGC+AGG + chr7_4:29303398-29303417 Msa1148790:intron 35.0%
! ACTTGGAAGTACATACAAGT+TGG + chr7_4:29303441-29303460 Msa1148790:CDS 35.0%
! CTTGGAAGTACATACAAGTT+GGG + chr7_4:29303442-29303461 Msa1148790:CDS 35.0%
! TTGGAAGTACATACAAGTTG+GGG + chr7_4:29303443-29303462 Msa1148790:CDS 35.0%
!! TAAGATGGCATGGATTGTTT+TGG + chr7_4:29303469-29303488 Msa1148790:CDS 35.0%
!! GGTGGAAGTAACTTTTGATT+TGG - chr7_4:29303506-29303525 None:intergenic 35.0%
!!! GTTTTTTAAGGCTTGACTTG+AGG + chr7_4:29303670-29303689 Msa1148790:three_prime_UTR 35.0%
! GAGTTTGAACTGTGAGTTGA+TGG - chr7_4:29300899-29300918 None:intergenic 40.0%
ATGAGGTTATGCATGCAGAT+AGG + chr7_4:29301169-29301188 Msa1148790:intron 40.0%
TGAGGTTATGCATGCAGATA+GGG + chr7_4:29301170-29301189 Msa1148790:intron 40.0%
! GGCACAATCTTGTCACATTT+TGG - chr7_4:29301198-29301217 None:intergenic 40.0%
!! GGCTATCTTTGAAATAGGCA+TGG + chr7_4:29301419-29301438 Msa1148790:intron 40.0%
TGGCATTCGACAACTTCAAT+CGG + chr7_4:29301439-29301458 Msa1148790:CDS 40.0%
! AGCTTTGACCTGTTTGGATA+GGG - chr7_4:29301499-29301518 None:intergenic 40.0%
!! TAGCTTTGACCTGTTTGGAT+AGG - chr7_4:29301500-29301519 None:intergenic 40.0%
TTCTTGGGAAGAATGATGAG+AGG - chr7_4:29301608-29301627 None:intergenic 40.0%
! TGGGGTTTTGCAAAAGGATA+TGG - chr7_4:29301638-29301657 None:intergenic 40.0%
TATCATGGGAACTTCCTTGT+GGG - chr7_4:29301657-29301676 None:intergenic 40.0%
ATATCATGGGAACTTCCTTG+TGG - chr7_4:29301658-29301677 None:intergenic 40.0%
GTGTAGGCTTCAGAAACATT+TGG - chr7_4:29301830-29301849 None:intergenic 40.0%
GTCAGCTTCAACAACTTTGA+GGG - chr7_4:29302445-29302464 None:intergenic 40.0%
! AGGATGGTGTTAGTCTCAAA+AGG - chr7_4:29302483-29302502 None:intergenic 40.0%
GGTCTTGAGAAGAACATTAG+TGG - chr7_4:29302523-29302542 None:intergenic 40.0%
CTCATTAAGAATGCCGCATT+GGG - chr7_4:29302558-29302577 None:intergenic 40.0%
ACTCATTAAGAATGCCGCAT+TGG - chr7_4:29302559-29302578 None:intergenic 40.0%
TTGTGTTGTCAAAAGTTCCC+TGG - chr7_4:29302602-29302621 None:intergenic 40.0%
TGGATGGGATTTCATATTCC+AGG - chr7_4:29302638-29302657 None:intergenic 40.0%
!! GCTGAATGATGAGTATTGGA+TGG - chr7_4:29302654-29302673 None:intergenic 40.0%
! CAAGTTTGGTTGCTTTGACA+AGG - chr7_4:29302852-29302871 None:intergenic 40.0%
TCAAAGCAACCAAACTTGTC+AGG + chr7_4:29302854-29302873 Msa1148790:CDS 40.0%
CAAAGCAACCAAACTTGTCA+GGG + chr7_4:29302855-29302874 Msa1148790:CDS 40.0%
GCTGCAAACATTGTTCCATT+GGG - chr7_4:29302882-29302901 None:intergenic 40.0%
TGCTGCAAACATTGTTCCAT+TGG - chr7_4:29302883-29302902 None:intergenic 40.0%
ACACTTTACTGGACAATCCA+AGG + chr7_4:29302953-29302972 Msa1148790:CDS 40.0%
CACTTTACTGGACAATCCAA+GGG + chr7_4:29302954-29302973 Msa1148790:CDS 40.0%
AGGGACTGTTTGGGAAATAA+GGG - chr7_4:29302989-29303008 None:intergenic 40.0%
AAGGGACTGTTTGGGAAATA+AGG - chr7_4:29302990-29303009 None:intergenic 40.0%
TCTTCCTTTCAACACAAGTG+TGG + chr7_4:29303079-29303098 Msa1148790:CDS 40.0%
TAAAGCCATGCAAATGGAGA+GGG - chr7_4:29303148-29303167 None:intergenic 40.0%
TTAAAGCCATGCAAATGGAG+AGG - chr7_4:29303149-29303168 None:intergenic 40.0%
AGATTCCTAGCAGATAATCC+AGG + chr7_4:29303293-29303312 Msa1148790:CDS 40.0%
TAATTGTGTGTGCAGGAGTA+TGG + chr7_4:29303405-29303424 Msa1148790:intron 40.0%
ATGGTTCATGCATTGTCACT+TGG + chr7_4:29303424-29303443 Msa1148790:CDS 40.0%
! TACAAGTTGGGGTCTTAAGA+TGG + chr7_4:29303454-29303473 Msa1148790:CDS 40.0%
!!! ATGGCATGGATTGTTTTGGA+TGG + chr7_4:29303473-29303492 Msa1148790:CDS 40.0%
!! GCCCTTTTTGTTATCCAACT+GGG + chr7_4:29303605-29303624 Msa1148790:three_prime_UTR 40.0%
GCCCAGTTGGATAACAAAAA+GGG - chr7_4:29303609-29303628 None:intergenic 40.0%
TGCCCAGTTGGATAACAAAA+AGG - chr7_4:29303610-29303629 None:intergenic 40.0%
ATGAATAACAACTGCCCAGT+TGG - chr7_4:29303622-29303641 None:intergenic 40.0%
TTGCGCATTTGAGCTTGCAA+TGG + chr7_4:29301036-29301055 Msa1148790:CDS 45.0%
CAAGATTGTGCCACAACAAG+AGG + chr7_4:29301206-29301225 Msa1148790:CDS 45.0%
ATTGTGCCACAACAAGAGGA+TGG + chr7_4:29301210-29301229 Msa1148790:CDS 45.0%
AAGAGGATGGTGACAGTGAA+CGG + chr7_4:29301223-29301242 Msa1148790:CDS 45.0%
GGCATTCGACAACTTCAATC+GGG + chr7_4:29301440-29301459 Msa1148790:CDS 45.0%
TTCGACAACTTCAATCGGGA+TGG + chr7_4:29301444-29301463 Msa1148790:CDS 45.0%
TCGACAACTTCAATCGGGAT+GGG + chr7_4:29301445-29301464 Msa1148790:CDS 45.0%
ACTCAATGCCCTATCCAAAC+AGG + chr7_4:29301488-29301507 Msa1148790:CDS 45.0%
! GCCAAAGAGGAACACTCTTT+TGG + chr7_4:29301543-29301562 Msa1148790:CDS 45.0%
!! GCCAAAAGAGTGTTCCTCTT+TGG - chr7_4:29301547-29301566 None:intergenic 45.0%
! TCCTTTTGCAAAACCCCACA+AGG + chr7_4:29301640-29301659 Msa1148790:CDS 45.0%
! TCCTTGTGGGGTTTTGCAAA+AGG - chr7_4:29301644-29301663 None:intergenic 45.0%
ATCATGGGAACTTCCTTGTG+GGG - chr7_4:29301656-29301675 None:intergenic 45.0%
TTGAAGGGCTTGTGCTATGA+TGG - chr7_4:29301795-29301814 None:intergenic 45.0%
ATAGCACAAGCCCTTCAAAC+TGG + chr7_4:29301797-29301816 Msa1148790:CDS 45.0%
TAGCACAAGCCCTTCAAACT+GGG + chr7_4:29301798-29301817 Msa1148790:CDS 45.0%
TTCAAGCTAAAGGTCAAGCC+TGG + chr7_4:29302348-29302367 Msa1148790:CDS 45.0%
CGTAGAAGGTAAGTCTTTCC+AGG - chr7_4:29302369-29302388 None:intergenic 45.0%
!! CAGCGTTGATCAAACGTAGA+AGG - chr7_4:29302383-29302402 None:intergenic 45.0%
CGTCAGCTTCAACAACTTTG+AGG - chr7_4:29302446-29302465 None:intergenic 45.0%
! AACATTAGTGGTTTGGCCAG+GGG - chr7_4:29302511-29302530 None:intergenic 45.0%
! GAACATTAGTGGTTTGGCCA+GGG - chr7_4:29302512-29302531 None:intergenic 45.0%
! AGAACATTAGTGGTTTGGCC+AGG - chr7_4:29302513-29302532 None:intergenic 45.0%
CAAGTCTCACTATCCCAATG+CGG + chr7_4:29302542-29302561 Msa1148790:CDS 45.0%
AGTGCTAGACCATATGCTAC+CGG + chr7_4:29302576-29302595 Msa1148790:CDS 45.0%
CACAACTGTTACTGGTATCC+TGG + chr7_4:29302617-29302636 Msa1148790:CDS 45.0%
GGGAGAGTAGGTTTGAATAG+TGG - chr7_4:29302696-29302715 None:intergenic 45.0%
!! TCATTAAGTGCTGGGAGAGT+AGG - chr7_4:29302708-29302727 None:intergenic 45.0%
TCGAAGAAACTCCGTAGTCT+TGG + chr7_4:29302750-29302769 Msa1148790:CDS 45.0%
ACTTTCTGTGGAACGTTAGC+CGG - chr7_4:29302789-29302808 None:intergenic 45.0%
!! TTTGACAAGGGTTGGTACCA+AGG - chr7_4:29302839-29302858 None:intergenic 45.0%
! TTGGTTGCTTTGACAAGGGT+TGG - chr7_4:29302847-29302866 None:intergenic 45.0%
GGGACTGTTTGGGAAATAAG+GGG - chr7_4:29302988-29303007 None:intergenic 45.0%
ATGGATGCAAGGGACTGTTT+GGG - chr7_4:29302998-29303017 None:intergenic 45.0%
AATGGATGCAAGGGACTGTT+TGG - chr7_4:29302999-29303018 None:intergenic 45.0%
!! TCACCATGGTGTTGTTTGGT+GGG - chr7_4:29303037-29303056 None:intergenic 45.0%
!! TTGCTCACCATGGTGTTGTT+TGG - chr7_4:29303041-29303060 None:intergenic 45.0%
AACAACACCATGGTGAGCAA+CGG + chr7_4:29303041-29303060 Msa1148790:CDS 45.0%
GAGCAACGGAACAAAGGTTA+CGG + chr7_4:29303055-29303074 Msa1148790:CDS 45.0%
AGCTCCACACTTGTGTTGAA+AGG - chr7_4:29303086-29303105 None:intergenic 45.0%
CTGCAAGACACTAGCATTCT+TGG + chr7_4:29303110-29303129 Msa1148790:CDS 45.0%
TCCTAGCAGATAATCCAGGT+TGG + chr7_4:29303297-29303316 Msa1148790:intron 45.0%
ACCAACCTGGATTATCTGCT+AGG - chr7_4:29303301-29303320 None:intergenic 45.0%
GAATTGACTAGGAACCAACC+TGG - chr7_4:29303314-29303333 None:intergenic 45.0%
TAACACTTGGGAAGATCAGC+TGG - chr7_4:29303530-29303549 None:intergenic 45.0%
!! GGCCCTTTTTGTTATCCAAC+TGG + chr7_4:29303604-29303623 Msa1148790:three_prime_UTR 45.0%
!!! ATTTTTTTATTTTTACATTT+TGG + chr7_4:29303583-29303602 Msa1148790:three_prime_UTR 5.0%
GCATTTGAGCTTGCAATGGC+CGG + chr7_4:29301040-29301059 Msa1148790:CDS 50.0%
!! TTGGTAGTGTCTGGTAGTGC+CGG - chr7_4:29301062-29301081 None:intergenic 50.0%
CTGTCACCATCCTCTTGTTG+TGG - chr7_4:29301219-29301238 None:intergenic 50.0%
ACAGTGAACGGTCAGTTTCC+AGG + chr7_4:29301235-29301254 Msa1148790:CDS 50.0%
GTTTCCAGGACCTCGCATTA+TGG + chr7_4:29301249-29301268 Msa1148790:CDS 50.0%
CCTTCTCTAGCCATAATGCG+AGG - chr7_4:29301262-29301281 None:intergenic 50.0%
CCTCGCATTATGGCTAGAGA+AGG + chr7_4:29301259-29301278 Msa1148790:CDS 50.0%
!! GGGCATTGAGTCACATATGC+CGG - chr7_4:29301479-29301498 None:intergenic 50.0%
AGCACAAGCCCTTCAAACTG+GGG + chr7_4:29301799-29301818 Msa1148790:CDS 50.0%
GAGCAGTTATACAATGGCCC+TGG - chr7_4:29301866-29301885 None:intergenic 50.0%
AACACCATCCTTATTGCCCC+TGG + chr7_4:29302492-29302511 Msa1148790:CDS 50.0%
CGCATTGGGATAGTGAGACT+TGG - chr7_4:29302544-29302563 None:intergenic 50.0%
GTTGTCAAAAGTTCCCTGGC+CGG - chr7_4:29302598-29302617 None:intergenic 50.0%
TGGAACGTTAGCCGGAAACT+GGG - chr7_4:29302781-29302800 None:intergenic 50.0%
CATTGGGTCCCTGACAAGTT+TGG - chr7_4:29302866-29302885 None:intergenic 50.0%
CAAACTTGTCAGGGACCCAA+TGG + chr7_4:29302864-29302883 Msa1148790:CDS 50.0%
! GATTGAAGAAGTGCGGTGGT+TGG - chr7_4:29302933-29302952 None:intergenic 50.0%
! GTGTGATTGAAGAAGTGCGG+TGG - chr7_4:29302937-29302956 None:intergenic 50.0%
! GGGGTGCCAGTGTAATTGAA+TGG - chr7_4:29303017-29303036 None:intergenic 50.0%
!! CACCATGGTGTTGTTTGGTG+GGG - chr7_4:29303036-29303055 None:intergenic 50.0%
!! CTCACCATGGTGTTGTTTGG+TGG - chr7_4:29303038-29303057 None:intergenic 50.0%
CTTTGTTCCGTTGCTCACCA+TGG - chr7_4:29303051-29303070 None:intergenic 50.0%
CATGGTGAGCAACGGAACAA+AGG + chr7_4:29303049-29303068 Msa1148790:CDS 50.0%
AGTCACCCTCTCCATTTGCA+TGG + chr7_4:29303140-29303159 Msa1148790:CDS 50.0%
CCAATCGTGTTTCTCTCGAC+AGG - chr7_4:29303245-29303264 None:intergenic 50.0%
CCTGTCGAGAGAAACACGAT+TGG + chr7_4:29303242-29303261 Msa1148790:CDS 50.0%
! AACACGATTGGTGTCCCATC+TGG + chr7_4:29303254-29303273 Msa1148790:CDS 50.0%
TAGCAACCCATCCACCAGAT+GGG - chr7_4:29303271-29303290 None:intergenic 50.0%
ATAGCAACCCATCCACCAGA+TGG - chr7_4:29303272-29303291 None:intergenic 50.0%
GTTGGGGTCTTAAGATGGCA+TGG + chr7_4:29303459-29303478 Msa1148790:CDS 50.0%
CTAGCCATAATGCGAGGTCC+TGG - chr7_4:29301256-29301275 None:intergenic 55.0%
!! CTTCAATCGGGATGGGCTGA+TGG + chr7_4:29301452-29301471 Msa1148790:CDS 55.0%
GCACAAGCCCTTCAAACTGG+GGG + chr7_4:29301800-29301819 Msa1148790:CDS 55.0%
TGGTCCTCCCCCAGTTTGAA+GGG - chr7_4:29301810-29301829 None:intergenic 55.0%
TTGGTCCTCCCCCAGTTTGA+AGG - chr7_4:29301811-29301830 None:intergenic 55.0%
TTGGCCAGGGGCAATAAGGA+TGG - chr7_4:29302499-29302518 None:intergenic 55.0%
! TGGTTTGGCCAGGGGCAATA+AGG - chr7_4:29302503-29302522 None:intergenic 55.0%
TAGACCATATGCTACCGGCC+AGG + chr7_4:29302581-29302600 Msa1148790:CDS 55.0%
AGACCATATGCTACCGGCCA+GGG + chr7_4:29302582-29302601 Msa1148790:CDS 55.0%
! ACTGGGCACTGCCAAGACTA+CGG - chr7_4:29302764-29302783 None:intergenic 55.0%
TCTTGGCAGTGCCCAGTTTC+CGG + chr7_4:29302767-29302786 Msa1148790:CDS 55.0%
GTGGAACGTTAGCCGGAAAC+TGG - chr7_4:29302782-29302801 None:intergenic 55.0%
! ATAAGGGGCGTAGACACCCT+TGG - chr7_4:29302973-29302992 None:intergenic 55.0%
CACCCCACCAAACAACACCA+TGG + chr7_4:29303031-29303050 Msa1148790:CDS 55.0%
! ACGATTGGTGTCCCATCTGG+TGG + chr7_4:29303257-29303276 Msa1148790:CDS 55.0%
! TTGGTGTCCCATCTGGTGGA+TGG + chr7_4:29303261-29303280 Msa1148790:CDS 55.0%
! TGGTGTCCCATCTGGTGGAT+GGG + chr7_4:29303262-29303281 Msa1148790:CDS 55.0%
TTGGGAAGATCAGCTGGTGG+TGG - chr7_4:29303524-29303543 None:intergenic 55.0%
CACTTGGGAAGATCAGCTGG+TGG - chr7_4:29303527-29303546 None:intergenic 55.0%
!! ATCGGGATGGGCTGATGGAC+CGG + chr7_4:29301457-29301476 Msa1148790:CDS 60.0%
CAAGCCCTTCAAACTGGGGG+AGG + chr7_4:29301803-29301822 Msa1148790:CDS 60.0%
GTTCCCTGGCCGGTAGCATA+TGG - chr7_4:29302588-29302607 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 29300888 29303789 29300888 ID=Msa1148790;Name=Msa1148790
chr7_4 mRNA 29300888 29303789 29300888 ID=Msa1148790-mRNA-1;Parent=Msa1148790;Name=Msa1148790-mRNA-1;_AED=0.08;_eAED=0.08;_QI=86|1|1|1|1|1|6|239|580
chr7_4 exon 29300888 29301087 29300888 ID=Msa1148790-mRNA-1:exon:7200;Parent=Msa1148790-mRNA-1
chr7_4 exon 29301187 29301338 29301187 ID=Msa1148790-mRNA-1:exon:7201;Parent=Msa1148790-mRNA-1
chr7_4 exon 29301436 29301680 29301436 ID=Msa1148790-mRNA-1:exon:7202;Parent=Msa1148790-mRNA-1
chr7_4 exon 29301765 29301893 29301765 ID=Msa1148790-mRNA-1:exon:7203;Parent=Msa1148790-mRNA-1
chr7_4 exon 29302343 29303314 29302343 ID=Msa1148790-mRNA-1:exon:7204;Parent=Msa1148790-mRNA-1
chr7_4 exon 29303420 29303789 29303420 ID=Msa1148790-mRNA-1:exon:7205;Parent=Msa1148790-mRNA-1
chr7_4 five_prime_UTR 29300888 29300973 29300888 ID=Msa1148790-mRNA-1:five_prime_utr;Parent=Msa1148790-mRNA-1
chr7_4 CDS 29300974 29301087 29300974 ID=Msa1148790-mRNA-1:cds;Parent=Msa1148790-mRNA-1
chr7_4 CDS 29301187 29301338 29301187 ID=Msa1148790-mRNA-1:cds;Parent=Msa1148790-mRNA-1
chr7_4 CDS 29301436 29301680 29301436 ID=Msa1148790-mRNA-1:cds;Parent=Msa1148790-mRNA-1
chr7_4 CDS 29301765 29301893 29301765 ID=Msa1148790-mRNA-1:cds;Parent=Msa1148790-mRNA-1
chr7_4 CDS 29302343 29303314 29302343 ID=Msa1148790-mRNA-1:cds;Parent=Msa1148790-mRNA-1
chr7_4 CDS 29303420 29303550 29303420 ID=Msa1148790-mRNA-1:cds;Parent=Msa1148790-mRNA-1
chr7_4 three_prime_UTR 29303551 29303789 29303551 ID=Msa1148790-mRNA-1:three_prime_utr;Parent=Msa1148790-mRNA-1
Gene Sequence

>Msa1148790

ATGGCTGTTACCATTTTTTCATCGCTTAAAATTGCAACGTTGTTTTTGTCATTGATAATTTTTTGCGCATTTGAGCTTGCAATGGCCGGCACTACCAGACACTACCAATTTGATATAGGGTACCAAAATGTGACAAGATTGTGCCACAACAAGAGGATGGTGACAGTGAACGGTCAGTTTCCAGGACCTCGCATTATGGCTAGAGAAGGAGATCGTCTTGTTATCAAAGTGGTGAACAATGTGCAAAACAACATCTCGATTCATTGGCATGGCATTCGACAACTTCAATCGGGATGGGCTGATGGACCGGCATATGTGACTCAATGCCCTATCCAAACAGGTCAAAGCTATGTTTACAATTACACAATTAAAGGCCAAAGAGGAACACTCTTTTGGCATGCTCATATATCTTGGTTAAGATCAACACTCTATGGTCCTCTCATCATTCTTCCCAAGAAAAATGTTCCATATCCTTTTGCAAAACCCCACAAGGAAGTTCCCATGATATTTGGAGAATGGTTCAATGCAGATACTGAAGCCATCATAGCACAAGCCCTTCAAACTGGGGGAGGACCAAATGTTTCTGAAGCCTACACAATTAATGGACTTCCAGGGCCATTGTATAACTGCTCTAAAAAAGATACATTCAAGCTAAAGGTCAAGCCTGGAAAGACTTACCTTCTACGTTTGATCAACGCTGCACTGAACGATGAGTTGTTCTTCAGCGTTGCAAATCACACCCTCAAAGTTGTTGAAGCTGACGCTATTTATGTGAAACCTTTTGAGACTAACACCATCCTTATTGCCCCTGGCCAAACCACTAATGTTCTTCTCAAGACCAAGTCTCACTATCCCAATGCGGCATTCTTAATGAGTGCTAGACCATATGCTACCGGCCAGGGAACTTTTGACAACACAACTGTTACTGGTATCCTGGAATATGAAATCCCATCCAATACTCATCATTCAGCTTCTTCACTAAAAAAGCTTCCACTATTCAAACCTACTCTCCCAGCACTTAATGACACTTCTTTTGCAACAAAGTTTTCGAAGAAACTCCGTAGTCTTGGCAGTGCCCAGTTTCCGGCTAACGTTCCACAGAAAGTTGATAAGCACTTTTTCTTCACAGTAAGCCTTGGTACCAACCCTTGTCAAAGCAACCAAACTTGTCAGGGACCCAATGGAACAATGTTTGCAGCATCAGTGAACAACGTATCTTTCACAACGCCAACCACCGCACTTCTTCAATCACACTTTACTGGACAATCCAAGGGTGTCTACGCCCCTTATTTCCCAAACAGTCCCTTGCATCCATTCAATTACACTGGCACCCCACCAAACAACACCATGGTGAGCAACGGAACAAAGGTTACGGTTCTTCCTTTCAACACAAGTGTGGAGCTTGTGCTGCAAGACACTAGCATTCTTGGTGCTGAAAGTCACCCTCTCCATTTGCATGGCTTTAACTTCTTTGTTGTTGGACAAGGATTTGGTAACTACGATTCAAATAAGGACCCCAAAAACTTTAATCTTGTTGATCCTGTCGAGAGAAACACGATTGGTGTCCCATCTGGTGGATGGGTTGCTATCAGATTCCTAGCAGATAATCCAGGAGTATGGTTCATGCATTGTCACTTGGAAGTACATACAAGTTGGGGTCTTAAGATGGCATGGATTGTTTTGGATGGAAAGCTTCCAAATCAAAAGTTACTTCCACCACCAGCTGATCTTCCCAAGTGTTAA
Protein sequence

>Msa1148790

MAVTIFSSLKIATLFLSLIIFCAFELAMAGTTRHYQFDIGYQNVTRLCHNKRMVTVNGQFPGPRIMAREGDRLVIKVVNNVQNNISIHWHGIRQLQSGWADGPAYVTQCPIQTGQSYVYNYTIKGQRGTLFWHAHISWLRSTLYGPLIILPKKNVPYPFAKPHKEVPMIFGEWFNADTEAIIAQALQTGGGPNVSEAYTINGLPGPLYNCSKKDTFKLKVKPGKTYLLRLINAALNDELFFSVANHTLKVVEADAIYVKPFETNTILIAPGQTTNVLLKTKSHYPNAAFLMSARPYATGQGTFDNTTVTGILEYEIPSNTHHSASSLKKLPLFKPTLPALNDTSFATKFSKKLRSLGSAQFPANVPQKVDKHFFFTVSLGTNPCQSNQTCQGPNGTMFAASVNNVSFTTPTTALLQSHFTGQSKGVYAPYFPNSPLHPFNYTGTPPNNTMVSNGTKVTVLPFNTSVELVLQDTSILGAESHPLHLHGFNFFVVGQGFGNYDSNKDPKNFNLVDPVERNTIGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVLDGKLPNQKLLPPPADLPKC*