Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063730 | KEH44235.1 | 82.000 | 50 | 9 | 0 | 21 | 70 | 575 | 624 | 5.68e-20 | 95.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063730 | A0A072W1S7 | 82.000 | 50 | 9 | 0 | 21 | 70 | 575 | 624 | 2.71e-20 | 95.9 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0259370 | Msa1063730 | 0.800471 | 1.418778e-48 | -8.615850e-47 |
| Msa0519000 | Msa1063730 | 0.803034 | 4.226563e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063730 | MtrunA17_Chr1g0210011 | 82.000 | 50 | 9 | 0 | 21 | 70 | 488 | 537 | 1.00e-22 | 92.4 |
| Msa1063730 | MtrunA17_Chr6g0471001 | 64.000 | 50 | 18 | 0 | 21 | 70 | 578 | 627 | 3.17e-16 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063730 | AT1G10385.1 | 54.000 | 50 | 23 | 0 | 21 | 70 | 564 | 613 | 6.81e-12 | 61.6 |
Find 31 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAATGCTCAAATGTATT+TGG | 0.176146 | 7_2:+55839393 | Msa1063730:CDS |
| TTTGGAGGTTAATTTCTATT+TGG | 0.214852 | 7_2:+55839338 | Msa1063730:CDS |
| TGATGCAATGCCTGCCATTC+TGG | 0.289593 | 7_2:-55839929 | None:intergenic |
| TTCTATTTGGCCATTGTTCT+TGG | 0.292592 | 7_2:+55839351 | Msa1063730:CDS |
| CTATCTTTGTGTTTCTGTTT+CGG | 0.306502 | 7_2:+55840628 | Msa1063730:CDS |
| AGGAGAGGTGTTGGCAACTT+AGG | 0.356177 | 7_2:+55840663 | Msa1063730:CDS |
| TGCTCAAATGTATTTGGATA+TGG | 0.360208 | 7_2:+55839399 | Msa1063730:CDS |
| CCATTGTTCTTGGCAGAAGA+TGG | 0.389900 | 7_2:+55839361 | Msa1063730:CDS |
| ATTGGAGAAGGAAACCATTC+AGG | 0.390426 | 7_2:-55839439 | None:intergenic |
| TATATCATGCTTGGTTCTCT+TGG | 0.399626 | 7_2:+55839298 | None:intergenic |
| TGTTTCGGCCGCCACATGAT+AGG | 0.403225 | 7_2:+55840643 | Msa1063730:CDS |
| AGATGCAATGCCTGCACTTC+CGG | 0.414428 | 7_2:-55841012 | None:intergenic |
| GGAGAGGTGTTGGCAACTTA+GGG | 0.421021 | 7_2:+55840664 | Msa1063730:CDS |
| ATTTGGATATGGAGGACAAA+GGG | 0.437364 | 7_2:+55839410 | Msa1063730:CDS |
| TACATTTGAGCATTCAATAG+TGG | 0.454695 | 7_2:-55839388 | None:intergenic |
| TTAAAGCTTACCAGAATGGC+AGG | 0.477468 | 7_2:+55839919 | Msa1063730:CDS |
| GTAAAGCTTACCGGAAGTGC+AGG | 0.494530 | 7_2:+55841002 | Msa1063730:CDS |
| CCACATGATAGGAGAGGTGT+TGG | 0.557144 | 7_2:+55840654 | Msa1063730:CDS |
| ATCTGATGCATTTGTGTGAA+GGG | 0.584077 | 7_2:+55841031 | Msa1063730:exon |
| TTTGGATATGGAGGACAAAG+GGG | 0.593511 | 7_2:+55839411 | Msa1063730:CDS |
| CCATCTTCTGCCAAGAACAA+TGG | 0.595327 | 7_2:-55839361 | None:intergenic |
| TCAAATGTATTTGGATATGG+AGG | 0.605535 | 7_2:+55839402 | Msa1063730:CDS |
| TATTTGGATATGGAGGACAA+AGG | 0.606231 | 7_2:+55839409 | Msa1063730:CDS |
| CAACTTAGGGGCGTTGTGTG+TGG | 0.611061 | 7_2:+55840677 | Msa1063730:CDS |
| CATCTGATGCATTTGTGTGA+AGG | 0.612023 | 7_2:+55841030 | Msa1063730:CDS |
| ATGGCAGGCATTGCATCAGA+AGG | 0.629737 | 7_2:+55839934 | Msa1063730:CDS |
| ACAAAGGGGAGATACCTGAA+TGG | 0.653986 | 7_2:+55839425 | Msa1063730:CDS |
| CGGCCGCCACATGATAGGAG+AGG | 0.657055 | 7_2:+55840648 | Msa1063730:CDS |
| GAGAGGTGTTGGCAACTTAG+GGG | 0.659916 | 7_2:+55840665 | Msa1063730:CDS |
| CCAACACCTCTCCTATCATG+TGG | 0.661877 | 7_2:-55840654 | None:intergenic |
| ACACCTCTCCTATCATGTGG+CGG | 0.666175 | 7_2:-55840651 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAGTTTTTGATAAATAAT+TGG | + | chr7_2:55840024-55840043 | Msa1063730:intron | 15.0% |
| !!! | CAGTTTTCTTTTATATATTT+TGG | + | chr7_2:55840201-55840220 | Msa1063730:intron | 15.0% |
| !!! | TCAAGTTTTTGATAAATAAT+TGG | + | chr7_2:55840024-55840043 | Msa1063730:intron | 15.0% |
| !!! | CAGTTTTCTTTTATATATTT+TGG | + | chr7_2:55840201-55840220 | Msa1063730:intron | 15.0% |
| !! | AGTGATAGTAATATAATCTA+TGG | + | chr7_2:55839576-55839595 | Msa1063730:intron | 20.0% |
| !!! | AGTTGATTTTAGAAACTTAA+TGG | + | chr7_2:55839966-55839985 | Msa1063730:CDS | 20.0% |
| !! | TATTTATCAAAAACTTGACT+TGG | - | chr7_2:55840022-55840041 | None:intergenic | 20.0% |
| !!! | TTTTGATAAATAATTGGACA+TGG | + | chr7_2:55840030-55840049 | Msa1063730:intron | 20.0% |
| !!! | TGTTTTGTGAAATGTAATTT+TGG | + | chr7_2:55840271-55840290 | Msa1063730:intron | 20.0% |
| !! | CATTTCATATATTATTGTTC+AGG | + | chr7_2:55840971-55840990 | Msa1063730:intron | 20.0% |
| !! | AGTGATAGTAATATAATCTA+TGG | + | chr7_2:55839576-55839595 | Msa1063730:intron | 20.0% |
| !!! | AGTTGATTTTAGAAACTTAA+TGG | + | chr7_2:55839966-55839985 | Msa1063730:CDS | 20.0% |
| !! | TATTTATCAAAAACTTGACT+TGG | - | chr7_2:55840022-55840041 | None:intergenic | 20.0% |
| !!! | TTTTGATAAATAATTGGACA+TGG | + | chr7_2:55840030-55840049 | Msa1063730:intron | 20.0% |
| !!! | TGTTTTGTGAAATGTAATTT+TGG | + | chr7_2:55840271-55840290 | Msa1063730:intron | 20.0% |
| !! | CATTTCATATATTATTGTTC+AGG | + | chr7_2:55840971-55840990 | Msa1063730:intron | 20.0% |
| ! | TTTGGAGGTTAATTTCTATT+TGG | + | chr7_2:55839338-55839357 | Msa1063730:CDS | 25.0% |
| ! | ATTGAATGCTCAAATGTATT+TGG | + | chr7_2:55839393-55839412 | Msa1063730:CDS | 25.0% |
| ! | TGTTTGTTTACCTGAAAAAT+TGG | - | chr7_2:55839460-55839479 | None:intergenic | 25.0% |
| !!! | TTTTTCAGGTAAACAAACAA+AGG | + | chr7_2:55839461-55839480 | Msa1063730:intron | 25.0% |
| ! | CATTTCATATATTACTGTTC+AGG | + | chr7_2:55839888-55839907 | Msa1063730:intron | 25.0% |
| !!! | TTTTTTAAAGCTTACCAGAA+TGG | + | chr7_2:55839915-55839934 | Msa1063730:CDS | 25.0% |
| ! | ATGCACAAAAAAAGGAATAT+AGG | - | chr7_2:55840116-55840135 | None:intergenic | 25.0% |
| ! | TTGAAAATCTGGAAGAAAAT+GGG | - | chr7_2:55840173-55840192 | None:intergenic | 25.0% |
| ! | TTTGAAAATCTGGAAGAAAA+TGG | - | chr7_2:55840174-55840193 | None:intergenic | 25.0% |
| !! | CTGAAGTTAATTTGAAAATC+TGG | - | chr7_2:55840184-55840203 | None:intergenic | 25.0% |
| ! | AGAAGATAACTTCAAATAAG+AGG | - | chr7_2:55840370-55840389 | None:intergenic | 25.0% |
| ! | TTGAATGTATCCATGTAAAT+CGG | + | chr7_2:55840869-55840888 | Msa1063730:intron | 25.0% |
| ! | TTTGGAGGTTAATTTCTATT+TGG | + | chr7_2:55839338-55839357 | Msa1063730:CDS | 25.0% |
| ! | ATTGAATGCTCAAATGTATT+TGG | + | chr7_2:55839393-55839412 | Msa1063730:CDS | 25.0% |
| ! | TGTTTGTTTACCTGAAAAAT+TGG | - | chr7_2:55839460-55839479 | None:intergenic | 25.0% |
| !!! | TTTTTCAGGTAAACAAACAA+AGG | + | chr7_2:55839461-55839480 | Msa1063730:intron | 25.0% |
| ! | CATTTCATATATTACTGTTC+AGG | + | chr7_2:55839888-55839907 | Msa1063730:intron | 25.0% |
| !!! | TTTTTTAAAGCTTACCAGAA+TGG | + | chr7_2:55839915-55839934 | Msa1063730:CDS | 25.0% |
| ! | ATGCACAAAAAAAGGAATAT+AGG | - | chr7_2:55840116-55840135 | None:intergenic | 25.0% |
| ! | TTGAAAATCTGGAAGAAAAT+GGG | - | chr7_2:55840173-55840192 | None:intergenic | 25.0% |
| ! | TTTGAAAATCTGGAAGAAAA+TGG | - | chr7_2:55840174-55840193 | None:intergenic | 25.0% |
| !! | CTGAAGTTAATTTGAAAATC+TGG | - | chr7_2:55840184-55840203 | None:intergenic | 25.0% |
| ! | AGAAGATAACTTCAAATAAG+AGG | - | chr7_2:55840370-55840389 | None:intergenic | 25.0% |
| ! | TTGAATGTATCCATGTAAAT+CGG | + | chr7_2:55840869-55840888 | Msa1063730:intron | 25.0% |
| TACATTTGAGCATTCAATAG+TGG | - | chr7_2:55839391-55839410 | None:intergenic | 30.0% | |
| TGCTCAAATGTATTTGGATA+TGG | + | chr7_2:55839399-55839418 | Msa1063730:CDS | 30.0% | |
| TCAAATGTATTTGGATATGG+AGG | + | chr7_2:55839402-55839421 | Msa1063730:CDS | 30.0% | |
| TTTACCTGAAAAATTGGAGA+AGG | - | chr7_2:55839454-55839473 | None:intergenic | 30.0% | |
| TTTGAATGTATTGCATGCAT+TGG | + | chr7_2:55839673-55839692 | Msa1063730:intron | 30.0% | |
| TTGAATGTATCCACGTAAAT+TGG | + | chr7_2:55839786-55839805 | Msa1063730:intron | 30.0% | |
| ATGTCTTCAATATCAAGTCT+CGG | + | chr7_2:55839841-55839860 | Msa1063730:intron | 30.0% | |
| ! | TTAGGTATAGCATTTTTCTC+TGG | + | chr7_2:55840090-55840109 | Msa1063730:intron | 30.0% |
| TGTCTTGAATGCACAAAAAA+AGG | - | chr7_2:55840124-55840143 | None:intergenic | 30.0% | |
| AAAACAATATTAGCAAGCCT+AGG | - | chr7_2:55840257-55840276 | None:intergenic | 30.0% | |
| GATAACTTCAAATAAGAGGA+AGG | - | chr7_2:55840366-55840385 | None:intergenic | 30.0% | |
| ATGCAATAAACTGACAACAA+TGG | - | chr7_2:55840475-55840494 | None:intergenic | 30.0% | |
| ! | CTATCTTTGTGTTTCTGTTT+CGG | + | chr7_2:55840628-55840647 | Msa1063730:CDS | 30.0% |
| TGACATCTATATGTCCTAAT+GGG | - | chr7_2:55840818-55840837 | None:intergenic | 30.0% | |
| ATGACATCTATATGTCCTAA+TGG | - | chr7_2:55840819-55840838 | None:intergenic | 30.0% | |
| ACATCTTCAATATCAAGTCT+TGG | + | chr7_2:55840924-55840943 | Msa1063730:intron | 30.0% | |
| TACATTTGAGCATTCAATAG+TGG | - | chr7_2:55839391-55839410 | None:intergenic | 30.0% | |
| TGCTCAAATGTATTTGGATA+TGG | + | chr7_2:55839399-55839418 | Msa1063730:CDS | 30.0% | |
| TCAAATGTATTTGGATATGG+AGG | + | chr7_2:55839402-55839421 | Msa1063730:CDS | 30.0% | |
| TTTACCTGAAAAATTGGAGA+AGG | - | chr7_2:55839454-55839473 | None:intergenic | 30.0% | |
| TTTGAATGTATTGCATGCAT+TGG | + | chr7_2:55839673-55839692 | Msa1063730:intron | 30.0% | |
| TTGAATGTATCCACGTAAAT+TGG | + | chr7_2:55839786-55839805 | Msa1063730:intron | 30.0% | |
| ATGTCTTCAATATCAAGTCT+CGG | + | chr7_2:55839841-55839860 | Msa1063730:intron | 30.0% | |
| ! | TTAGGTATAGCATTTTTCTC+TGG | + | chr7_2:55840090-55840109 | Msa1063730:intron | 30.0% |
| TGTCTTGAATGCACAAAAAA+AGG | - | chr7_2:55840124-55840143 | None:intergenic | 30.0% | |
| AAAACAATATTAGCAAGCCT+AGG | - | chr7_2:55840257-55840276 | None:intergenic | 30.0% | |
| GATAACTTCAAATAAGAGGA+AGG | - | chr7_2:55840366-55840385 | None:intergenic | 30.0% | |
| ATGCAATAAACTGACAACAA+TGG | - | chr7_2:55840475-55840494 | None:intergenic | 30.0% | |
| ! | CTATCTTTGTGTTTCTGTTT+CGG | + | chr7_2:55840628-55840647 | Msa1063730:CDS | 30.0% |
| TGACATCTATATGTCCTAAT+GGG | - | chr7_2:55840818-55840837 | None:intergenic | 30.0% | |
| ATGACATCTATATGTCCTAA+TGG | - | chr7_2:55840819-55840838 | None:intergenic | 30.0% | |
| ACATCTTCAATATCAAGTCT+TGG | + | chr7_2:55840924-55840943 | Msa1063730:intron | 30.0% | |
| !!! | GTAGTTTTGACGAACATGTT+TGG | + | chr7_2:55839320-55839339 | Msa1063730:CDS | 35.0% |
| TTCTATTTGGCCATTGTTCT+TGG | + | chr7_2:55839351-55839370 | Msa1063730:CDS | 35.0% | |
| TATTTGGATATGGAGGACAA+AGG | + | chr7_2:55839409-55839428 | Msa1063730:CDS | 35.0% | |
| ATTTGGATATGGAGGACAAA+GGG | + | chr7_2:55839410-55839429 | Msa1063730:CDS | 35.0% | |
| ! | GTTTCCTTCTCCAATTTTTC+AGG | + | chr7_2:55839447-55839466 | Msa1063730:CDS | 35.0% |
| AAGTGTAGAGCTATAACCAA+TGG | - | chr7_2:55839500-55839519 | None:intergenic | 35.0% | |
| CAATGATCGAAATCTCACTT+AGG | + | chr7_2:55840072-55840091 | Msa1063730:intron | 35.0% | |
| GAAGAAAATGGGACTGAATT+CGG | - | chr7_2:55840162-55840181 | None:intergenic | 35.0% | |
| !! | GTTGCTTTGTCTGTTTTCTA+TGG | + | chr7_2:55840293-55840312 | Msa1063730:intron | 35.0% |
| !! | TTGTTTTTCATCTCCTCTCA+AGG | + | chr7_2:55840319-55840338 | Msa1063730:intron | 35.0% |
| ! | TGTTATAGGTGCTCTTTTTG+CGG | + | chr7_2:55840538-55840557 | Msa1063730:intron | 35.0% |
| !! | TTGGTGCTAGATAGAGTATA+AGG | + | chr7_2:55840943-55840962 | Msa1063730:intron | 35.0% |
| ! | GAGCTTTTTGTAAAGCTTAC+CGG | + | chr7_2:55840993-55841012 | Msa1063730:CDS | 35.0% |
| ATCTGATGCATTTGTGTGAA+GGG | + | chr7_2:55841031-55841050 | Msa1063730:exon | 35.0% | |
| !!! | GTAGTTTTGACGAACATGTT+TGG | + | chr7_2:55839320-55839339 | Msa1063730:CDS | 35.0% |
| TTCTATTTGGCCATTGTTCT+TGG | + | chr7_2:55839351-55839370 | Msa1063730:CDS | 35.0% | |
| TATTTGGATATGGAGGACAA+AGG | + | chr7_2:55839409-55839428 | Msa1063730:CDS | 35.0% | |
| ATTTGGATATGGAGGACAAA+GGG | + | chr7_2:55839410-55839429 | Msa1063730:CDS | 35.0% | |
| ! | GTTTCCTTCTCCAATTTTTC+AGG | + | chr7_2:55839447-55839466 | Msa1063730:CDS | 35.0% |
| AAGTGTAGAGCTATAACCAA+TGG | - | chr7_2:55839500-55839519 | None:intergenic | 35.0% | |
| CAATGATCGAAATCTCACTT+AGG | + | chr7_2:55840072-55840091 | Msa1063730:intron | 35.0% | |
| GAAGAAAATGGGACTGAATT+CGG | - | chr7_2:55840162-55840181 | None:intergenic | 35.0% | |
| !! | GTTGCTTTGTCTGTTTTCTA+TGG | + | chr7_2:55840293-55840312 | Msa1063730:intron | 35.0% |
| !! | TTGTTTTTCATCTCCTCTCA+AGG | + | chr7_2:55840319-55840338 | Msa1063730:intron | 35.0% |
| ! | TGTTATAGGTGCTCTTTTTG+CGG | + | chr7_2:55840538-55840557 | Msa1063730:intron | 35.0% |
| !! | TTGGTGCTAGATAGAGTATA+AGG | + | chr7_2:55840943-55840962 | Msa1063730:intron | 35.0% |
| ! | GAGCTTTTTGTAAAGCTTAC+CGG | + | chr7_2:55840993-55841012 | Msa1063730:CDS | 35.0% |
| ATCTGATGCATTTGTGTGAA+GGG | + | chr7_2:55841031-55841050 | Msa1063730:exon | 35.0% | |
| !! | GTTTTGACGAACATGTTTGG+AGG | + | chr7_2:55839323-55839342 | Msa1063730:CDS | 40.0% |
| TTTGGATATGGAGGACAAAG+GGG | + | chr7_2:55839411-55839430 | Msa1063730:CDS | 40.0% | |
| ATTGGAGAAGGAAACCATTC+AGG | - | chr7_2:55839442-55839461 | None:intergenic | 40.0% | |
| AGGATACTTCATGCTTCCAT+TGG | + | chr7_2:55839481-55839500 | Msa1063730:intron | 40.0% | |
| ! | TGTATTGCATGCATTGGTGT+CGG | + | chr7_2:55839679-55839698 | Msa1063730:intron | 40.0% |
| TGAACACAACAATGCACAGA+CGG | + | chr7_2:55839723-55839742 | Msa1063730:intron | 40.0% | |
| GTATCCACGTAAATTGGTGT+CGG | + | chr7_2:55839792-55839811 | Msa1063730:intron | 40.0% | |
| ! | TATCCACGTAAATTGGTGTC+GGG | + | chr7_2:55839793-55839812 | Msa1063730:intron | 40.0% |
| !! | TCGGTGCTAGATAGAGTATA+AGG | + | chr7_2:55839860-55839879 | Msa1063730:intron | 40.0% |
| TTAAAGCTTACCAGAATGGC+AGG | + | chr7_2:55839919-55839938 | Msa1063730:CDS | 40.0% | |
| TGGATGAGTACTTATTTGCG+TGG | + | chr7_2:55840221-55840240 | Msa1063730:intron | 40.0% | |
| TGCGTGGATTTATTGTTCCT+AGG | + | chr7_2:55840237-55840256 | Msa1063730:intron | 40.0% | |
| TCCCAAACCATTGTTCGATT+GGG | + | chr7_2:55840500-55840519 | Msa1063730:intron | 40.0% | |
| !!! | GTTTTTAGGTGTTCTTCAGC+AGG | + | chr7_2:55840701-55840720 | Msa1063730:CDS | 40.0% |
| !!! | GTTCTTCAGCAGGTTTTTTC+AGG | + | chr7_2:55840711-55840730 | Msa1063730:intron | 40.0% |
| !!! | CTTTTCCCCTTCTGTTTTTG+CGG | + | chr7_2:55840734-55840753 | Msa1063730:intron | 40.0% |
| GTATCCATGTAAATCGGTGT+CGG | + | chr7_2:55840875-55840894 | Msa1063730:intron | 40.0% | |
| ! | TATCCATGTAAATCGGTGTC+GGG | + | chr7_2:55840876-55840895 | Msa1063730:intron | 40.0% |
| CATCTGATGCATTTGTGTGA+AGG | + | chr7_2:55841030-55841049 | Msa1063730:CDS | 40.0% | |
| !! | GTTTTGACGAACATGTTTGG+AGG | + | chr7_2:55839323-55839342 | Msa1063730:CDS | 40.0% |
| TTTGGATATGGAGGACAAAG+GGG | + | chr7_2:55839411-55839430 | Msa1063730:CDS | 40.0% | |
| ATTGGAGAAGGAAACCATTC+AGG | - | chr7_2:55839442-55839461 | None:intergenic | 40.0% | |
| AGGATACTTCATGCTTCCAT+TGG | + | chr7_2:55839481-55839500 | Msa1063730:intron | 40.0% | |
| ! | TGTATTGCATGCATTGGTGT+CGG | + | chr7_2:55839679-55839698 | Msa1063730:intron | 40.0% |
| TGAACACAACAATGCACAGA+CGG | + | chr7_2:55839723-55839742 | Msa1063730:intron | 40.0% | |
| GTATCCACGTAAATTGGTGT+CGG | + | chr7_2:55839792-55839811 | Msa1063730:intron | 40.0% | |
| ! | TATCCACGTAAATTGGTGTC+GGG | + | chr7_2:55839793-55839812 | Msa1063730:intron | 40.0% |
| !! | TCGGTGCTAGATAGAGTATA+AGG | + | chr7_2:55839860-55839879 | Msa1063730:intron | 40.0% |
| TTAAAGCTTACCAGAATGGC+AGG | + | chr7_2:55839919-55839938 | Msa1063730:CDS | 40.0% | |
| TGGATGAGTACTTATTTGCG+TGG | + | chr7_2:55840221-55840240 | Msa1063730:intron | 40.0% | |
| TGCGTGGATTTATTGTTCCT+AGG | + | chr7_2:55840237-55840256 | Msa1063730:intron | 40.0% | |
| TCCCAAACCATTGTTCGATT+GGG | + | chr7_2:55840500-55840519 | Msa1063730:intron | 40.0% | |
| !!! | GTTTTTAGGTGTTCTTCAGC+AGG | + | chr7_2:55840701-55840720 | Msa1063730:CDS | 40.0% |
| !!! | GTTCTTCAGCAGGTTTTTTC+AGG | + | chr7_2:55840711-55840730 | Msa1063730:intron | 40.0% |
| !!! | CTTTTCCCCTTCTGTTTTTG+CGG | + | chr7_2:55840734-55840753 | Msa1063730:intron | 40.0% |
| GTATCCATGTAAATCGGTGT+CGG | + | chr7_2:55840875-55840894 | Msa1063730:intron | 40.0% | |
| ! | TATCCATGTAAATCGGTGTC+GGG | + | chr7_2:55840876-55840895 | Msa1063730:intron | 40.0% |
| CATCTGATGCATTTGTGTGA+AGG | + | chr7_2:55841030-55841049 | Msa1063730:CDS | 40.0% | |
| CCATCTTCTGCCAAGAACAA+TGG | - | chr7_2:55839364-55839383 | None:intergenic | 45.0% | |
| CCATTGTTCTTGGCAGAAGA+TGG | + | chr7_2:55839361-55839380 | Msa1063730:CDS | 45.0% | |
| ACAAAGGGGAGATACCTGAA+TGG | + | chr7_2:55839425-55839444 | Msa1063730:CDS | 45.0% | |
| CTCCCAAACCATTGTTCGAT+TGG | + | chr7_2:55840499-55840518 | Msa1063730:intron | 45.0% | |
| CCCCAATCGAACAATGGTTT+GGG | - | chr7_2:55840504-55840523 | None:intergenic | 45.0% | |
| CCCAAACCATTGTTCGATTG+GGG | + | chr7_2:55840501-55840520 | Msa1063730:intron | 45.0% | |
| ACCCCAATCGAACAATGGTT+TGG | - | chr7_2:55840505-55840524 | None:intergenic | 45.0% | |
| ! | GCGTTGTGTGTGGTGTTTTT+AGG | + | chr7_2:55840687-55840706 | Msa1063730:CDS | 45.0% |
| CAGAACCGCAAAAACAGAAG+GGG | - | chr7_2:55840742-55840761 | None:intergenic | 45.0% | |
| GCAGAACCGCAAAAACAGAA+GGG | - | chr7_2:55840743-55840762 | None:intergenic | 45.0% | |
| TGCAGAACCGCAAAAACAGA+AGG | - | chr7_2:55840744-55840763 | None:intergenic | 45.0% | |
| !!! | TCTGTTTTTGCGGTTCTGCA+TGG | + | chr7_2:55840744-55840763 | Msa1063730:intron | 45.0% |
| !!! | CTGTTTTTGCGGTTCTGCAT+GGG | + | chr7_2:55840745-55840764 | Msa1063730:intron | 45.0% |
| GATGTGCTAAACAGCATAGC+AGG | - | chr7_2:55840776-55840795 | None:intergenic | 45.0% | |
| TTTAGCACATCCGCGTGTAA+TGG | + | chr7_2:55840785-55840804 | Msa1063730:intron | 45.0% | |
| GTAATGGCTGTTGTCCCATT+AGG | + | chr7_2:55840801-55840820 | Msa1063730:intron | 45.0% | |
| CCATCTTCTGCCAAGAACAA+TGG | - | chr7_2:55839364-55839383 | None:intergenic | 45.0% | |
| CCATTGTTCTTGGCAGAAGA+TGG | + | chr7_2:55839361-55839380 | Msa1063730:CDS | 45.0% | |
| ACAAAGGGGAGATACCTGAA+TGG | + | chr7_2:55839425-55839444 | Msa1063730:CDS | 45.0% | |
| CTCCCAAACCATTGTTCGAT+TGG | + | chr7_2:55840499-55840518 | Msa1063730:intron | 45.0% | |
| CCCCAATCGAACAATGGTTT+GGG | - | chr7_2:55840504-55840523 | None:intergenic | 45.0% | |
| CCCAAACCATTGTTCGATTG+GGG | + | chr7_2:55840501-55840520 | Msa1063730:intron | 45.0% | |
| ACCCCAATCGAACAATGGTT+TGG | - | chr7_2:55840505-55840524 | None:intergenic | 45.0% | |
| ! | GCGTTGTGTGTGGTGTTTTT+AGG | + | chr7_2:55840687-55840706 | Msa1063730:CDS | 45.0% |
| CAGAACCGCAAAAACAGAAG+GGG | - | chr7_2:55840742-55840761 | None:intergenic | 45.0% | |
| GCAGAACCGCAAAAACAGAA+GGG | - | chr7_2:55840743-55840762 | None:intergenic | 45.0% | |
| TGCAGAACCGCAAAAACAGA+AGG | - | chr7_2:55840744-55840763 | None:intergenic | 45.0% | |
| !!! | TCTGTTTTTGCGGTTCTGCA+TGG | + | chr7_2:55840744-55840763 | Msa1063730:intron | 45.0% |
| !!! | CTGTTTTTGCGGTTCTGCAT+GGG | + | chr7_2:55840745-55840764 | Msa1063730:intron | 45.0% |
| GATGTGCTAAACAGCATAGC+AGG | - | chr7_2:55840776-55840795 | None:intergenic | 45.0% | |
| TTTAGCACATCCGCGTGTAA+TGG | + | chr7_2:55840785-55840804 | Msa1063730:intron | 45.0% | |
| GTAATGGCTGTTGTCCCATT+AGG | + | chr7_2:55840801-55840820 | Msa1063730:intron | 45.0% | |
| TGATGCAATGCCTGCCATTC+TGG | - | chr7_2:55839932-55839951 | None:intergenic | 50.0% | |
| ! | ATGGCAGGCATTGCATCAGA+AGG | + | chr7_2:55839934-55839953 | Msa1063730:CDS | 50.0% |
| TCATCTCCTCTCAAGGTGAG+AGG | + | chr7_2:55840326-55840345 | Msa1063730:intron | 50.0% | |
| TTCCTTCCTCTCACCTTGAG+AGG | - | chr7_2:55840335-55840354 | None:intergenic | 50.0% | |
| CACTCACCCCAATCGAACAA+TGG | - | chr7_2:55840510-55840529 | None:intergenic | 50.0% | |
| CATTGTTCGATTGGGGTGAG+TGG | + | chr7_2:55840508-55840527 | Msa1063730:intron | 50.0% | |
| !! | TGAGTGGTGGTGGCTGTTAT+AGG | + | chr7_2:55840524-55840543 | Msa1063730:intron | 50.0% |
| CAGCACACAGAGGCTAAAAC+AGG | - | chr7_2:55840597-55840616 | None:intergenic | 50.0% | |
| CTAAACACAGCAGCACACAG+AGG | - | chr7_2:55840607-55840626 | None:intergenic | 50.0% | |
| ! | CTCTGTGTGCTGCTGTGTTT+AGG | + | chr7_2:55840605-55840624 | Msa1063730:intron | 50.0% |
| ACACCTCTCCTATCATGTGG+CGG | - | chr7_2:55840654-55840673 | None:intergenic | 50.0% | |
| CCAACACCTCTCCTATCATG+TGG | - | chr7_2:55840657-55840676 | None:intergenic | 50.0% | |
| ! | CCACATGATAGGAGAGGTGT+TGG | + | chr7_2:55840654-55840673 | Msa1063730:CDS | 50.0% |
| !! | AGGAGAGGTGTTGGCAACTT+AGG | + | chr7_2:55840663-55840682 | Msa1063730:CDS | 50.0% |
| !! | GGAGAGGTGTTGGCAACTTA+GGG | + | chr7_2:55840664-55840683 | Msa1063730:CDS | 50.0% |
| !! | GAGAGGTGTTGGCAACTTAG+GGG | + | chr7_2:55840665-55840684 | Msa1063730:CDS | 50.0% |
| TTTGCGGTTCTGCATGGGTT+AGG | + | chr7_2:55840750-55840769 | Msa1063730:intron | 50.0% | |
| ! | GTAAAGCTTACCGGAAGTGC+AGG | + | chr7_2:55841002-55841021 | Msa1063730:CDS | 50.0% |
| AGATGCAATGCCTGCACTTC+CGG | - | chr7_2:55841015-55841034 | None:intergenic | 50.0% | |
| TGATGCAATGCCTGCCATTC+TGG | - | chr7_2:55839932-55839951 | None:intergenic | 50.0% | |
| ! | ATGGCAGGCATTGCATCAGA+AGG | + | chr7_2:55839934-55839953 | Msa1063730:CDS | 50.0% |
| TCATCTCCTCTCAAGGTGAG+AGG | + | chr7_2:55840326-55840345 | Msa1063730:intron | 50.0% | |
| TTCCTTCCTCTCACCTTGAG+AGG | - | chr7_2:55840335-55840354 | None:intergenic | 50.0% | |
| CACTCACCCCAATCGAACAA+TGG | - | chr7_2:55840510-55840529 | None:intergenic | 50.0% | |
| CATTGTTCGATTGGGGTGAG+TGG | + | chr7_2:55840508-55840527 | Msa1063730:intron | 50.0% | |
| !! | TGAGTGGTGGTGGCTGTTAT+AGG | + | chr7_2:55840524-55840543 | Msa1063730:intron | 50.0% |
| CAGCACACAGAGGCTAAAAC+AGG | - | chr7_2:55840597-55840616 | None:intergenic | 50.0% | |
| CTAAACACAGCAGCACACAG+AGG | - | chr7_2:55840607-55840626 | None:intergenic | 50.0% | |
| ! | CTCTGTGTGCTGCTGTGTTT+AGG | + | chr7_2:55840605-55840624 | Msa1063730:intron | 50.0% |
| ACACCTCTCCTATCATGTGG+CGG | - | chr7_2:55840654-55840673 | None:intergenic | 50.0% | |
| CCAACACCTCTCCTATCATG+TGG | - | chr7_2:55840657-55840676 | None:intergenic | 50.0% | |
| ! | CCACATGATAGGAGAGGTGT+TGG | + | chr7_2:55840654-55840673 | Msa1063730:CDS | 50.0% |
| !! | AGGAGAGGTGTTGGCAACTT+AGG | + | chr7_2:55840663-55840682 | Msa1063730:CDS | 50.0% |
| !! | GGAGAGGTGTTGGCAACTTA+GGG | + | chr7_2:55840664-55840683 | Msa1063730:CDS | 50.0% |
| !! | GAGAGGTGTTGGCAACTTAG+GGG | + | chr7_2:55840665-55840684 | Msa1063730:CDS | 50.0% |
| TTTGCGGTTCTGCATGGGTT+AGG | + | chr7_2:55840750-55840769 | Msa1063730:intron | 50.0% | |
| ! | GTAAAGCTTACCGGAAGTGC+AGG | + | chr7_2:55841002-55841021 | Msa1063730:CDS | 50.0% |
| AGATGCAATGCCTGCACTTC+CGG | - | chr7_2:55841015-55841034 | None:intergenic | 50.0% | |
| GTGCCCGACACCAATTTACG+TGG | - | chr7_2:55839799-55839818 | None:intergenic | 55.0% | |
| CTCCTCTCAAGGTGAGAGGA+AGG | + | chr7_2:55840330-55840349 | Msa1063730:intron | 55.0% | |
| TGTTCGATTGGGGTGAGTGG+TGG | + | chr7_2:55840511-55840530 | Msa1063730:intron | 55.0% | |
| TGTTTCGGCCGCCACATGAT+AGG | + | chr7_2:55840643-55840662 | Msa1063730:CDS | 55.0% | |
| !! | CAACTTAGGGGCGTTGTGTG+TGG | + | chr7_2:55840677-55840696 | Msa1063730:CDS | 55.0% |
| GGGACAACAGCCATTACACG+CGG | - | chr7_2:55840798-55840817 | None:intergenic | 55.0% | |
| !! | GTGCCCGACACCGATTTACA+TGG | - | chr7_2:55840882-55840901 | None:intergenic | 55.0% |
| GTGCCCGACACCAATTTACG+TGG | - | chr7_2:55839799-55839818 | None:intergenic | 55.0% | |
| CTCCTCTCAAGGTGAGAGGA+AGG | + | chr7_2:55840330-55840349 | Msa1063730:intron | 55.0% | |
| TGTTCGATTGGGGTGAGTGG+TGG | + | chr7_2:55840511-55840530 | Msa1063730:intron | 55.0% | |
| TGTTTCGGCCGCCACATGAT+AGG | + | chr7_2:55840643-55840662 | Msa1063730:CDS | 55.0% | |
| !! | CAACTTAGGGGCGTTGTGTG+TGG | + | chr7_2:55840677-55840696 | Msa1063730:CDS | 55.0% |
| GGGACAACAGCCATTACACG+CGG | - | chr7_2:55840798-55840817 | None:intergenic | 55.0% | |
| !! | GTGCCCGACACCGATTTACA+TGG | - | chr7_2:55840882-55840901 | None:intergenic | 55.0% |
| TCGATTGGGGTGAGTGGTGG+TGG | + | chr7_2:55840514-55840533 | Msa1063730:intron | 60.0% | |
| TCGATTGGGGTGAGTGGTGG+TGG | + | chr7_2:55840514-55840533 | Msa1063730:intron | 60.0% | |
| CGGCCGCCACATGATAGGAG+AGG | + | chr7_2:55840648-55840667 | Msa1063730:CDS | 65.0% | |
| CGGCCGCCACATGATAGGAG+AGG | + | chr7_2:55840648-55840667 | Msa1063730:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 55839304 | 55841099 | 55839304 | ID=Msa1063730;Name=Msa1063730 |
| chr7_2 | mRNA | 55839304 | 55841099 | 55839304 | ID=Msa1063730-mRNA-1;Parent=Msa1063730;Name=Msa1063730-mRNA-1;_AED=0.74;_eAED=0.74;_QI=0|0|0.25|0.5|1|1|4|50|131 |
| chr7_2 | exon | 55839304 | 55839468 | 55839304 | ID=Msa1063730-mRNA-1:exon:10477;Parent=Msa1063730-mRNA-1 |
| chr7_2 | exon | 55839910 | 55839987 | 55839910 | ID=Msa1063730-mRNA-1:exon:10478;Parent=Msa1063730-mRNA-1 |
| chr7_2 | exon | 55840627 | 55840722 | 55840627 | ID=Msa1063730-mRNA-1:exon:10479;Parent=Msa1063730-mRNA-1 |
| chr7_2 | exon | 55840993 | 55841099 | 55840993 | ID=Msa1063730-mRNA-1:exon:10480;Parent=Msa1063730-mRNA-1 |
| chr7_2 | CDS | 55839304 | 55839468 | 55839304 | ID=Msa1063730-mRNA-1:cds;Parent=Msa1063730-mRNA-1 |
| chr7_2 | CDS | 55839910 | 55839987 | 55839910 | ID=Msa1063730-mRNA-1:cds;Parent=Msa1063730-mRNA-1 |
| chr7_2 | CDS | 55840627 | 55840722 | 55840627 | ID=Msa1063730-mRNA-1:cds;Parent=Msa1063730-mRNA-1 |
| chr7_2 | CDS | 55840993 | 55841049 | 55840993 | ID=Msa1063730-mRNA-1:cds;Parent=Msa1063730-mRNA-1 |
| chr7_2 | three_prime_UTR | 55841050 | 55841099 | 55841050 | ID=Msa1063730-mRNA-1:three_prime_utr;Parent=Msa1063730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
